Physcomitrella patens mitochondrion, complete genome.
type: Entry
definition: Physcomitrella patens mitochondrion, complete genome.
sequence version: NC_007945.1
sequence date: 2023-04-03
sequence: sequence
division: PLN
label: NC_007945.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Physcomitrium patens
organism: Physcomitrium patens
taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrium.
reference: 1
references: 17175527
reference: 2
reference: 3
comment: PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence was derived from AB251495.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 105340
topology: circular
so has quality: SO_0000988
location: 1..105340
location: region:1-105340:1
RO_0002162: 3218

NC_007945
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: The mitochondrial genome of the moss Physcomitrella patens sheds new light on mitochondrial evolution in land plants
author: Terasawa, K.
author: Odahara, M.
author: Kabeya, Y.
author: Kikugawa, T.
author: Sekine, Y.
author: Fujiwara, M.
author: Sato, N.
journal: Mol. Biol. Evol.
volume: 24
issue: 3
pages: 699-709
year: 2007
pubmed: 17175527

17175527
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (07-APR-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Terasawa, K.
author: Odahara, M.
author: Kabeya, Y.
author: Kikugawa, T.
author: Sekine, Y.
author: Fujiwara, M.
author: Sato, N.
journal: Submitted (22-FEB-2006) University of Tokyo, Department of Life Sciences, Graduate School of Arts and Sciences; Komaba, 3-8-1, Meguro-ku, Tokyo 153-8902, Japan

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:105340:1
position: 105340
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-105340:1:source
so part of: sequence
organism: Physcomitrium patens
organelle: mitochondrion
mol type: genomic DNA

3218
type: Taxonomy
SIO_000068: taxonomy

PhpafMt01
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
locus tag: PhpafMt01
so part of: sequence
location: 155..228
location: region:155-228:1
so has part: feature:155-228:1:exon
subclass of: SO_0000663

3989069
type: Gene
SIO_000068: ncbigene

position:155:1
position: 155
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:228:1
position: 228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:155-228:1:exon

PhpafMt01
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3218
locus tag: PhpafMt01
product: tRNA-Ile
note: C in the first position of the anticodon assumed to be post-transcriptionally modified to lysidine, which pairs with A rather than G; tRNA with a methionine anticodon post-transcriptionally modified to have tRNA isoleucine activity
anticodon: (pos:189..191,aa:Ile,seq:cat)
codon recognized: AUA
SIO_010081: PhpafMt01
subclass of: SO_0000673
so part of: PhpafMt01
location: 155..228
location: region:155-228:1
so has part: feature:155-228:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:155-228:1:exon

PhpafMt02
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
locus tag: PhpafMt02
so part of: sequence
location: 1078..1150
location: region:1078-1150:1
so has part: feature:1078-1150:1:exon
subclass of: SO_0000663

3989070
type: Gene
SIO_000068: ncbigene

position:1078:1
position: 1078
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1150:1
position: 1150
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1078-1150:1:exon

PhpafMt02
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3218
locus tag: PhpafMt02
product: tRNA-Lys
anticodon: (pos:1110..1112,aa:Lys,seq:ttt)
codon recognized: AAA
SIO_010081: PhpafMt02
subclass of: SO_0000673
so part of: PhpafMt02
location: 1078..1150
location: region:1078-1150:1
so has part: feature:1078-1150:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1078-1150:1:exon

PhpafMp01
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: cox1
locus tag: PhpafMp01
so part of: sequence
location: complement(2893..10494)
location: region:2893-10494:-1
so has part: feature:2893-10494:-1:exon
subclass of: SO_0000010

3989051
type: Gene
SIO_000068: ncbigene

position:2893:-1
position: 2893
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10494:-1
position: 10494
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2893-10494:-1:exon

PhpafMp01
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3218
gene: cox1
locus tag: PhpafMp01
codon start: 1
product: cytochrome c oxidase subunit 1
translation: MNNFAQRWLFSTNHKDIGTLYLIFGAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGGFGNWFVPILIGAPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGAGTGWTVYPPLSGITSHSGGSVDLAIFSLHLSGVSSILGSINFITTIFNMRGPGMTMHRLPLFVWSVLVTAFLLLLSLPVLAGAITMLLTDRNFNTTFFDPAGGGDPILYQHLFWFFGHPEVYILISPGFGIISHIVSTFSRKPVFGYLGMVYALISIGVLGFIVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKIFSWIATMWGGSIQYKTPMLFAVGFIFLFTVGGLTGIVLANSGLDIALHDTYYVVAHFHYVLSMGAVFALFAGFYYWIGKITGLQYPETLGQIHFWITFFGVNLTFFPMHFLGLAGMPRRIPDYPDAYAGWNAFSSFGSYVSVIGIFCFFVVVFFTLTSENKCAPSPWAVEQNSTTLEWMVKSPPAFHTFSELPVIKESI
SIO_010081: PhpafMp01
subclass of: SO_0000673
so part of: PhpafMp01
location: complement(join(2893..3397,4793..5124,7758..7864,8260..8373,9984..10494))
location: region:2893-10494:-1
so has part: feature:9984-10494:-1:exon
so has part: feature:8260-8373:-1:exon
so has part: feature:7758-7864:-1:exon
so has part: feature:4793-5124:-1:exon
so has part: feature:2893-3397:-1:exon

YP_539000.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9984-10494:-1:exon

position:9984:-1
position: 9984
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:8260-8373:-1:exon

position:8260:-1
position: 8260
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8373:-1
position: 8373
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:7758-7864:-1:exon

position:7758:-1
position: 7758
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7864:-1
position: 7864
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4793-5124:-1:exon

position:4793:-1
position: 4793
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5124:-1
position: 5124
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2893-3397:-1:exon

position:3397:-1
position: 3397
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PhpafMp02
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: ORF622
locus tag: PhpafMp02
so part of: sequence
location: complement(5235..7103)
location: region:5235-7103:-1
so has part: feature:5235-7103:-1:exon
subclass of: SO_0000010

3989065
type: Gene
SIO_000068: ncbigene

position:5235:-1
position: 5235
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7103:-1
position: 7103
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5235-7103:-1:exon

PhpafMp02
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3218
gene: ORF622
locus tag: PhpafMp02
note: maturase (reverse transcriptase)
codon start: 1
product: group II intron-associated open reading frame
translation: MNEGRWPMLGKRFTAIHQLVKNQQRILSLLAASLGFGNPLLRDCMLEICTQLTSRIIAVDNLYYTSRSRTPGVNGKILEASSRIGLVRRISWINLKNYKSSPVRHVFIFEPQNGERLLRIPTIFDRTVQHLFKLAIEPVTEPFADKYSFGSRRGKCAHMAVGEIAYILDTRRQRVGKVSNNKMEQNSKNFVSKWVIDANIKGFFGRIFHRWILENFPMPSSTEIVLEEWLKSPIEYPGELEVSFRGVISPLIANFALDGLENRITSGHRTTMTDPKRTEWTQKKGHRYLFNQTRKTESVRLIRYADDFVIITNDETLVERLFEKAKSFLAERGLQLSSEKTRIFPWKIGERLNFIGFIFHNIDRARSHSQVTSLWKVQKNFTRGGLYVYPNPDRIMSLKWKIKNVFSENIGLSPYQMIKLVNPILHGWGNYFGIGNFLRTFSLLDHWIWHRSWRYLHRKFSKTPRPRLVSRFYQGVPSPRGRLWDFHATWTKPSVDAKRHCADVVWITLLASMVKEVPAHMFRGSRDLGNPFVDPTPFDEWNLRIQSYREILVDGKGNEFSRLFIRQKGICPVCNQGLGYLTSSNLEIHNLRPFYKNPEVPGNDNLLHKSLVHSWCLVTEHA
SIO_010081: PhpafMp02
subclass of: SO_0000673
so part of: PhpafMp02
location: complement(5235..7103)
location: region:5235-7103:-1
so has part: feature:5235-7103:-1:exon

YP_539001.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5235-7103:-1:exon

PhpafMp03
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: atp4
locus tag: PhpafMp03
so part of: sequence
location: complement(10491..11042)
location: region:10491-11042:-1
so has part: feature:10491-11042:-1:exon
subclass of: SO_0000010

3989094
type: Gene
SIO_000068: ncbigene

position:10491:-1
position: 10491
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11042:-1
position: 11042
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10491-11042:-1:exon

PhpafMp03
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3218
gene: atp4
locus tag: PhpafMp03
codon start: 1
product: ATPase subunit 4
translation: MREFIIFTILIFSVLSSKQILIYNEEIIVALSFVGFVIFSKKTFGETLKATSDARSEALLSELQQLMSSQEALLSELKKQHELRSISLRSSTQMIGESCINDLLTRCAPKCKQTVQAVLCQQVEQKLKTLLAIQEHSRSSLQEKIVTCFRETVCDEFRFSKLRKHQSKLVQQSMVLLKDGVLK
SIO_010081: PhpafMp03
subclass of: SO_0000673
so part of: PhpafMp03
location: complement(10491..11042)
location: region:10491-11042:-1
so has part: feature:10491-11042:-1:exon

YP_539002.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10491-11042:-1:exon

PhpafMp04
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: atp8
locus tag: PhpafMp04
so part of: sequence
location: complement(11035..11559)
location: region:11035-11559:-1
so has part: feature:11035-11559:-1:exon
subclass of: SO_0000010

3989096
type: Gene
SIO_000068: ncbigene

position:11035:-1
position: 11035
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11559:-1
position: 11559
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11035-11559:-1:exon

PhpafMp04
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3218
gene: atp8
locus tag: PhpafMp04
codon start: 1
product: ATPase subunit 8
translation: MPQLDQFTYLTQFVWLCVFYMAFYVLLYNDGLPKISRILKLRKQLISHQNVGTEPSDYSVEQDVVFKECFDTSISYLYSGVSGASKWCNEMVKSLNANQLKQMNKSYVCSLGEISVSQVIKKNALSIMSPSTYHITSLASRQTTALNKIYVLRGQRNTLVNIKNGQKKKKNTNA
SIO_010081: PhpafMp04
subclass of: SO_0000673
so part of: PhpafMp04
location: complement(11035..11559)
location: region:11035-11559:-1
so has part: feature:11035-11559:-1:exon

YP_539003.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11035-11559:-1:exon

PhpafMp05
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: rps1
locus tag: PhpafMp05
so part of: sequence
location: complement(12114..12845)
location: region:12114-12845:-1
so has part: feature:12114-12845:-1:exon
subclass of: SO_0000010

3989102
type: Gene
SIO_000068: ncbigene

position:12114:-1
position: 12114
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12845:-1
position: 12845
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12114-12845:-1:exon

PhpafMp05
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3218
gene: rps1
locus tag: PhpafMp05
codon start: 1
product: ribosomal protein S1
translation: MSFTQLFPQYNSSLNPLRGSAIQCSVKKLRQNMILVNTGLKTPIICFQHELKKVPITKQTRFILGIEDVEVFGEPKMLLPKPLERKCKSKLVWTELTKIWRSDRNLIKGFILNSVKGGYAVAIAGHIAFLPKSLRRNRKVFHSQWRIFSILNMNSKIGNIVVKEIGDGKLDYSSPAKPRQKQVKRLGAKRKHLQNTKKNTFFHKYEKTEKKKKEKFQLYSHGSYDPKDQTKLKALRPKASSPH
SIO_010081: PhpafMp05
subclass of: SO_0000673
so part of: PhpafMp05
location: complement(12114..12845)
location: region:12114-12845:-1
so has part: feature:12114-12845:-1:exon

YP_539004.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12114-12845:-1:exon

PhpafMt03
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
locus tag: PhpafMt03
so part of: sequence
location: 13129..13199
location: region:13129-13199:1
so has part: feature:13129-13199:1:exon
subclass of: SO_0000663

3989071
type: Gene
SIO_000068: ncbigene

position:13129:1
position: 13129
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13199:1
position: 13199
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13129-13199:1:exon

PhpafMt03
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3218
locus tag: PhpafMt03
product: tRNA-Cys
anticodon: (pos:13161..13163,aa:Cys,seq:gca)
codon recognized: UGC
SIO_010081: PhpafMt03
subclass of: SO_0000673
so part of: PhpafMt03
location: 13129..13199
location: region:13129-13199:1
so has part: feature:13129-13199:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13129-13199:1:exon

PhpafMt04
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
locus tag: PhpafMt04
so part of: sequence
location: complement(13556..13629)
location: region:13556-13629:-1
so has part: feature:13556-13629:-1:exon
subclass of: SO_0000663

3989072
type: Gene
SIO_000068: ncbigene

position:13556:-1
position: 13556
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13629:-1
position: 13629
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13556-13629:-1:exon

PhpafMt04
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3218
locus tag: PhpafMt04
product: tRNA-Phe
anticodon: (pos:complement(13593..13595),aa:Phe,seq:gaa)
codon recognized: UUC
SIO_010081: PhpafMt04
subclass of: SO_0000673
so part of: PhpafMt04
location: complement(13556..13629)
location: region:13556-13629:-1
so has part: feature:13556-13629:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13556-13629:-1:exon

PhpafMp06
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: rps2
locus tag: PhpafMp06
so part of: sequence
location: 13651..14376
location: region:13651-14376:1
so has part: feature:13651-14376:1:exon
subclass of: SO_0000010

3989108
type: Gene
SIO_000068: ncbigene

position:13651:1
position: 13651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14376:1
position: 14376
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13651-14376:1:exon

PhpafMp06
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3218
gene: rps2
locus tag: PhpafMp06
codon start: 1
product: ribosomal protein S2
translation: MYNSSLLVIQKLLSTNAYLGHRIPTSDFQGYLYGFRNEMAIINLEKTLICLRRACNLIESIIRAKGHFLLVNTDPEYNKIVQQMAKKTNQSYINHKWIGGFLTNRKHMKNVQKHFQNFSAHSKLKDASTSSPFDFFPHFRKMQKCFEGIMTHDIPDCLVIINANKNSMAILEANQLQIPIVSLVDSNISNRLQKLITYPIPVNDDSIQFVYLFCNLITKTVILSQSAWPLSRKPLSRGRRP
SIO_010081: PhpafMp06
subclass of: SO_0000673
so part of: PhpafMp06
location: 13651..14376
location: region:13651-14376:1
so has part: feature:13651-14376:1:exon

YP_539005.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13651-14376:1:exon

PhpafMp07
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: ccmB
locus tag: PhpafMp07
so part of: sequence
location: 14538..15065
location: region:14538-15065:1
so has part: feature:14538-15065:1:exon
subclass of: SO_0000010

3989098
type: Gene
SIO_000068: ncbigene

position:14538:1
position: 14538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15065:1
position: 15065
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14538-15065:1:exon

PhpafMp07
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3218
gene: ccmB
locus tag: PhpafMp07
codon start: 1
product: cytochrome c biogenesis B
translation: MIGFSKDFLCHFHLGLIWICLLFSFLPERFLQNDFEDGTLELYCSSGYCLQKILLSKVVGHWVLQISGVFCTFPVVQLLYQFDQLKMNWFTLIIGSLIFTLMCGIHSCLALGIISHSWNSLQNLTTLPTLLPLIIFCASTETEWFHVVLLMGYLLLFLFLYAILVSITLQKLISQ
SIO_010081: PhpafMp07
subclass of: SO_0000673
so part of: PhpafMp07
location: 14538..15065
location: region:14538-15065:1
so has part: feature:14538-15065:1:exon

YP_539006.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14538-15065:1:exon

PhpafMp08
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: ccmC
locus tag: PhpafMp08
so part of: sequence
location: 15529..16341
location: region:15529-16341:1
so has part: feature:15529-16341:1:exon
subclass of: SO_0000010

3989099
type: Gene
SIO_000068: ncbigene

position:15529:1
position: 15529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16341:1
position: 16341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15529-16341:1:exon

PhpafMp08
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3218
gene: ccmC
locus tag: PhpafMp08
codon start: 1
product: cytochrome c biogenesis C
translation: MYFEILRPYLIMLCSFRYAQILIGFCWFVAAMAIYLSIWVAPSDFQQGENYRIIYVHVPAAWMSLLIYIAMALSSVLFLLTKHPLFQLFSKSGAKIGALFTLFTLLTGGFWGKPMWGTFWVWDARLTSVLILFFIYLGALRFQQFSADVASIFICIGLINIPIIKFSVNWWNTLHQPSSISQFGTSIHISMLIPILLILISFFCLSGIFFILETRQIILSFSSFSVKSQINPQNNNRKQVFFRQTIDQAKAPKERWTFILLGLIKLFKAL
SIO_010081: PhpafMp08
subclass of: SO_0000673
so part of: PhpafMp08
location: 15529..16341
location: region:15529-16341:1
so has part: feature:15529-16341:1:exon

YP_539007.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15529-16341:1:exon

PhpafMp09
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: ccmFN
locus tag: PhpafMp09
so part of: sequence
location: 16418..18241
location: region:16418-18241:1
so has part: feature:16418-18241:1:exon
subclass of: SO_0000010

3989049
type: Gene
SIO_000068: ncbigene

position:16418:1
position: 16418
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18241:1
position: 18241
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16418-18241:1:exon

PhpafMp09
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3218
gene: ccmFN
locus tag: PhpafMp09
codon start: 1
product: cytochrome c biogenesis factor N
translation: MYNELGHYFLVLSIFVALTYNKRPAAISLYFFCFTISFFGILFCYISSDFSNYNVFTNSNANAPLFYKISGTWSNHEGSLLLWCWILSFYGFFLGHRVRPCNVSKRGRSKNIFFFRRPLVAFRFACFIKKENKQFRHHLLQNLFGTINRKSSLKSQSKAAPSGIVQEPSDKRLENGVNARDNKRPIRLKKWKELYALCNNLDSLFLAQNANDKVSFIDERRIYMGIALFFSIFLLASSNPFVRISFVCTKSLAELNPVLQDPILAIHPPCIYAGYVASAIGFCLCLAKIMNGISVLYLPIRRESKAEMFNAFSRITNKLITQENAKKTIKNIFENTSSLHPSFAFILRSNRSLLGLRHLVSLSSLWSKERLNLTKSQWTKRVVRKANTAVLHFGWTRSANKVVSGPQYHGWKQIQIWILTCWCFLTVGILLGSWWAYHELGWGGWWFWDPVENASFMPWLLATACIHSVILPKLNYWTLFLNMLTFLCCVLGTFFVRSGLLASVHSFATDSTRGIFLWFFFVLITSISLMFFFQMKQQSSTRLVGALSDLPSNQGLRAQKPVNQILWYSRRSTLFVHLRKFTRLSKLIEDEEGHDKLIVYKASKIHK
SIO_010081: PhpafMp09
subclass of: SO_0000673
so part of: PhpafMp09
location: 16418..18241
location: region:16418-18241:1
so has part: feature:16418-18241:1:exon

YP_539008.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16418-18241:1:exon

PhpafMp10
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: ccmF
locus tag: PhpafMp10
so part of: sequence
location: 18530..20747
location: region:18530-20747:1
so has part: feature:18530-20747:1:exon
subclass of: SO_0000010

3989100
type: Gene
SIO_000068: ncbigene

position:18530:1
position: 18530
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20747:1
position: 20747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18530-20747:1:exon

PhpafMp10
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3218
gene: ccmF
locus tag: PhpafMp10
codon start: 1
product: cytochrome c biogenesis factor
translation: MVQLQNFFFFLIFMVVLCGTAAPILFQWLVSRDVPTGAPFSHGTIIPIFTSLSLLLVYVHSRGFIRSMDKTERIVLVRARPILLPNIIEKSSPKTRAKNAFFFFFIFIFNFFIFKFMGDLSYLESFCGVLCFLLFCTFFLSSKYRRDTWANKEPRLGIEKKRKARKRAQRRKRQALCWPNEKKKQRNKKKENAFLFLSNKSKIFLIYLLQFSKTFGFNEKAKILAFYSLLAFSQAYSSVPENSWNRFFLVRALPKRLMDVGHDFRKVPMTMKISHGGVCIFIMGVILSNTKKRQFTQLLPLGSELHIGREHCCLRGIDQLHGPTFHSICGNLIIYKPSLKNPFILDHDESLRAIIDLLPIAAPSYQTEKVEKKYIYFFSTFFHGDRSWRNREHHSFPLWLTVFPEKRFSFSNQETSTTKVAIHSNLFTDLYALIGTGSFETGWYITIMKLPFIFCIWIGFILASLGGLRSFLRQLALYRLDWN
SIO_010081: PhpafMp10
subclass of: SO_0000673
so part of: PhpafMp10
location: join(18530..19392,20159..20747)
location: region:18530-20747:1
so has part: feature:18530-19392:1:exon
so has part: feature:20159-20747:1:exon

YP_539009.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18530-19392:1:exon

position:19392:1
position: 19392
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:20159-20747:1:exon

position:20159:1
position: 20159
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PhpafMt05
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
locus tag: PhpafMt05
so part of: sequence
location: complement(20789..20860)
location: region:20789-20860:-1
so has part: feature:20789-20860:-1:exon
subclass of: SO_0000663

3989073
type: Gene
SIO_000068: ncbigene

position:20789:-1
position: 20789
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20860:-1
position: 20860
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20789-20860:-1:exon

PhpafMt05
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3218
locus tag: PhpafMt05
product: tRNA-Gln
anticodon: (pos:complement(20826..20828),aa:Gln,seq:ttg)
codon recognized: CAA
SIO_010081: PhpafMt05
subclass of: SO_0000673
so part of: PhpafMt05
location: complement(20789..20860)
location: region:20789-20860:-1
so has part: feature:20789-20860:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:20789-20860:-1:exon

PhpafMt06
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
locus tag: PhpafMt06
so part of: sequence
location: complement(22130..22214)
location: region:22130-22214:-1
so has part: feature:22130-22214:-1:exon
subclass of: SO_0000663

3989074
type: Gene
SIO_000068: ncbigene

position:22130:-1
position: 22130
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22214:-1
position: 22214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22130-22214:-1:exon

PhpafMt06
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3218
locus tag: PhpafMt06
product: tRNA-Leu
anticodon: (pos:complement(22178..22180),aa:Leu,seq:tag)
codon recognized: CUA
SIO_010081: PhpafMt06
subclass of: SO_0000673
so part of: PhpafMt06
location: complement(22130..22214)
location: region:22130-22214:-1
so has part: feature:22130-22214:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:22130-22214:-1:exon

PhpafMt07
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
locus tag: PhpafMt07
so part of: sequence
location: complement(22982..23065)
location: region:22982-23065:-1
so has part: feature:22982-23065:-1:exon
subclass of: SO_0000663

3989075
type: Gene
SIO_000068: ncbigene

position:22982:-1
position: 22982
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23065:-1
position: 23065
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22982-23065:-1:exon

PhpafMt07
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3218
locus tag: PhpafMt07
product: tRNA-Ser
anticodon: (pos:complement(23014..23016),aa:Ser,seq:tga)
codon recognized: UCA
SIO_010081: PhpafMt07
subclass of: SO_0000673
so part of: PhpafMt07
location: complement(22982..23065)
location: region:22982-23065:-1
so has part: feature:22982-23065:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:22982-23065:-1:exon

PhpafMt08
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
locus tag: PhpafMt08
so part of: sequence
location: 23178..23248
location: region:23178-23248:1
so has part: feature:23178-23248:1:exon
subclass of: SO_0000663

3989076
type: Gene
SIO_000068: ncbigene

position:23178:1
position: 23178
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23248:1
position: 23248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23178-23248:1:exon

PhpafMt08
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3218
locus tag: PhpafMt08
product: tRNA-Gly
anticodon: (pos:23210..23212,aa:Gly,seq:tcc)
codon recognized: GGA
SIO_010081: PhpafMt08
subclass of: SO_0000673
so part of: PhpafMt08
location: 23178..23248
location: region:23178-23248:1
so has part: feature:23178-23248:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:23178-23248:1:exon

PhpafMp11
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: rps4
locus tag: PhpafMp11
so part of: sequence
location: 23277..23864
location: region:23277-23864:1
so has part: feature:23277-23864:1:exon
subclass of: SO_0000010

3989110
type: Gene
SIO_000068: ncbigene

position:23277:1
position: 23277
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23864:1
position: 23864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23277-23864:1:exon

PhpafMp11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3218
gene: rps4
locus tag: PhpafMp11
codon start: 1
product: Ribosomal protein S4
translation: MPASRFKTCRQISENVWQTKKLTQKQKAIILKLRKKTNKKQSDFSKELQTIQKLSLFYGKLPIKKMQRSKTQTYLDKKNSLLFDIERRLDVILVRLNFCLTIFQARQLISHKKICVNYKMVNIPGFQLSNGDLISIQDNFIYFIRSKIRQNFQSNRIWRIKPTHLEVNYKTLKAVVLYEPQQIQFPYSIDLDLLD
SIO_010081: PhpafMp11
subclass of: SO_0000673
so part of: PhpafMp11
location: 23277..23864
location: region:23277-23864:1
so has part: feature:23277-23864:1:exon

YP_539010.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23277-23864:1:exon

PhpafMp12
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: tatC
locus tag: PhpafMp12
so part of: sequence
location: complement(24605..25339)
location: region:24605-25339:-1
so has part: feature:24605-25339:-1:exon
subclass of: SO_0000010

3989117
type: Gene
SIO_000068: ncbigene

position:24605:-1
position: 24605
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25339:-1
position: 25339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24605-25339:-1:exon

PhpafMp12
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3218
gene: tatC
locus tag: PhpafMp12
codon start: 1
product: Sec-independent protein translocase protein
translation: MNFLFKTILKEVRIRFFWIFICFSLTWFTCYWFSEDLFFSSAKSFLILSYSGFICTQLTEALSTYVTISLISCFYFLFPFLSYQIWCFLIPSCYEEQRKKYNKFFYLSGFCFFLFFFVTFVGVVPNVWHFLYELNKTSTNLLIIKLQPKIFDYILLTVRILFISSICSQVQVLVIFLLESKGIFVKSCIKNRRFFMVLSIFTAAFLTPPDIWCQIVACLLIYCIIELTIFYALIIQVYKKQLVL
SIO_010081: PhpafMp12
subclass of: SO_0000673
so part of: PhpafMp12
location: complement(24605..25339)
location: region:24605-25339:-1
so has part: feature:24605-25339:-1:exon

YP_539011.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24605-25339:-1:exon

PhpafMt09
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
locus tag: PhpafMt09
so part of: sequence
location: 25756..25829
location: region:25756-25829:1
so has part: feature:25756-25829:1:exon
subclass of: SO_0000663

3989077
type: Gene
SIO_000068: ncbigene

position:25756:1
position: 25756
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25829:1
position: 25829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25756-25829:1:exon

PhpafMt09
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3218
locus tag: PhpafMt09
product: tRNA-Arg
anticodon: (pos:25790..25792,aa:Arg,seq:tct)
codon recognized: AGA
SIO_010081: PhpafMt09
subclass of: SO_0000673
so part of: PhpafMt09
location: 25756..25829
location: region:25756-25829:1
so has part: feature:25756-25829:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:25756-25829:1:exon

PhpafMt10
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
locus tag: PhpafMt10
so part of: sequence
location: 25981..26063
location: region:25981-26063:1
so has part: feature:25981-26063:1:exon
subclass of: SO_0000663

3989078
type: Gene
SIO_000068: ncbigene

position:25981:1
position: 25981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26063:1
position: 26063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25981-26063:1:exon

PhpafMt10
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3218
locus tag: PhpafMt10
product: tRNA-Tyr
anticodon: (pos:26015..26017,aa:Tyr,seq:gta)
codon recognized: UAC
SIO_010081: PhpafMt10
subclass of: SO_0000673
so part of: PhpafMt10
location: 25981..26063
location: region:25981-26063:1
so has part: feature:25981-26063:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:25981-26063:1:exon

PhpafMp13
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: nad4L
locus tag: PhpafMp13
so part of: sequence
location: complement(26110..27972)
location: region:26110-27972:-1
so has part: feature:26110-27972:-1:exon
subclass of: SO_0000010

3989058
type: Gene
SIO_000068: ncbigene

position:26110:-1
position: 26110
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27972:-1
position: 27972
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26110-27972:-1:exon

PhpafMp13
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3218
gene: nad4L
locus tag: PhpafMp13
codon start: 1
product: NADH dehydrogenase subunit 4L
translation: MDLVKYLTFSMILFLLGIWGIFLNRKNILIMLMSIELMLLAVDLNFLVFSVYLDDMMGQLFALFVLTVAAAESAIGLAILVITFRIRGTIAVEFINCMKG
SIO_010081: PhpafMp13
subclass of: SO_0000673
so part of: PhpafMp13
location: complement(join(26110..26129,27690..27972))
location: region:26110-27972:-1
so has part: feature:27690-27972:-1:exon
so has part: feature:26110-26129:-1:exon

YP_539012.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27690-27972:-1:exon

position:27690:-1
position: 27690
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:26110-26129:-1:exon

position:26129:-1
position: 26129
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PhpafMp14
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: sdh4
locus tag: PhpafMp14
so part of: sequence
location: complement(28271..28531)
location: region:28271-28531:-1
so has part: feature:28271-28531:-1:exon
subclass of: SO_0000010

3989116
type: Gene
SIO_000068: ncbigene

position:28271:-1
position: 28271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28531:-1
position: 28531
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28271-28531:-1:exon

PhpafMp14
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3218
gene: sdh4
locus tag: PhpafMp14
codon start: 1
product: succinate dehydrogenase subunit 4
translation: MKAHRETLGHWLLQRMTAASLIPTILISNVSTLILLNILLFWHIHVGIEEILTDYVHHEITRNWILILFRVFCLIIIKYVFLFFVF
SIO_010081: PhpafMp14
subclass of: SO_0000673
so part of: PhpafMp14
location: complement(28271..28531)
location: region:28271-28531:-1
so has part: feature:28271-28531:-1:exon

YP_539013.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28271-28531:-1:exon

PhpafMp15
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: sdh3
locus tag: PhpafMp15
so part of: sequence
location: complement(28796..30100)
location: region:28796-30100:-1
so has part: feature:28796-30100:-1:exon
subclass of: SO_0000010

3989115
type: Gene
SIO_000068: ncbigene

position:28796:-1
position: 28796
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30100:-1
position: 30100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28796-30100:-1:exon

PhpafMp15
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3218
gene: sdh3
locus tag: PhpafMp15
codon start: 1
product: succinate dehydrogenase subunit 3
translation: MKINRPLSPHLTIYKPQLTSTFSIFHRISGAFLASMVFFSILFLKIGDLNLTSYYLYRYAFSFTFYFHWLISSVVNFSLLALCYHMSNGIRHLLWDLGFFLELSKVYTSGIIMLFCAAFLAVSNIIRFYFS
SIO_010081: PhpafMp15
subclass of: SO_0000673
so part of: PhpafMp15
location: complement(join(28796..29091,30001..30100))
location: region:28796-30100:-1
so has part: feature:30001-30100:-1:exon
so has part: feature:28796-29091:-1:exon

YP_539014.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30001-30100:-1:exon

position:30001:-1
position: 30001
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:28796-29091:-1:exon

position:29091:-1
position: 29091
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PhpafMt11
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
locus tag: PhpafMt11
so part of: sequence
location: complement(30126..30199)
location: region:30126-30199:-1
so has part: feature:30126-30199:-1:exon
subclass of: SO_0000663

3989079
type: Gene
SIO_000068: ncbigene

position:30126:-1
position: 30126
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30199:-1
position: 30199
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30126-30199:-1:exon

PhpafMt11
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3218
locus tag: PhpafMt11
product: tRNA-Pro
anticodon: (pos:complement(30163..30165),aa:Pro,seq:tgg)
codon recognized: CCA
SIO_010081: PhpafMt11
subclass of: SO_0000673
so part of: PhpafMt11
location: complement(30126..30199)
location: region:30126-30199:-1
so has part: feature:30126-30199:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:30126-30199:-1:exon

PhpafMr01
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: rrn18
locus tag: PhpafMr01
so part of: sequence
location: 31030..32616
location: region:31030-32616:1
so has part: feature:31030-32616:1:exon
subclass of: SO_0000573

3989112
type: Gene
SIO_000068: ncbigene

position:31030:1
position: 31030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32616:1
position: 32616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31030-32616:1:exon

PhpafMr01
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 3218
gene: rrn18
locus tag: PhpafMr01
product: 18S ribosomal RNA
SIO_010081: PhpafMr01
subclass of: SO_0000673
so part of: PhpafMr01
location: 31030..32616
location: region:31030-32616:1
so has part: feature:31030-32616:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:31030-32616:1:exon

PhpafMt12
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
locus tag: PhpafMt12
so part of: sequence
location: 33103..33175
location: region:33103-33175:1
so has part: feature:33103-33175:1:exon
subclass of: SO_0000663

3989080
type: Gene
SIO_000068: ncbigene

position:33103:1
position: 33103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33175:1
position: 33175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33103-33175:1:exon

PhpafMt12
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3218
locus tag: PhpafMt12
product: tRNA-Met
anticodon: (pos:33137..33139,aa:Met,seq:cat)
codon recognized: AUG
SIO_010081: PhpafMt12
subclass of: SO_0000673
so part of: PhpafMt12
location: 33103..33175
location: region:33103-33175:1
so has part: feature:33103-33175:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:33103-33175:1:exon

PhpafMr02
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: rrn5
locus tag: PhpafMr02
so part of: sequence
location: 33750..33871
location: region:33750-33871:1
so has part: feature:33750-33871:1:exon
subclass of: SO_0000573

3989114
type: Gene
SIO_000068: ncbigene

position:33750:1
position: 33750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33871:1
position: 33871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33750-33871:1:exon

PhpafMr02
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 3218
gene: rrn5
locus tag: PhpafMr02
product: 5S ribosomal RNA
SIO_010081: PhpafMr02
subclass of: SO_0000673
so part of: PhpafMr02
location: 33750..33871
location: region:33750-33871:1
so has part: feature:33750-33871:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:33750-33871:1:exon

PhpafMt13
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
locus tag: PhpafMt13
so part of: sequence
location: 34122..34194
location: region:34122-34194:1
so has part: feature:34122-34194:1:exon
subclass of: SO_0000663

3989081
type: Gene
SIO_000068: ncbigene

position:34122:1
position: 34122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34194:1
position: 34194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34122-34194:1:exon

PhpafMt13
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3218
locus tag: PhpafMt13
product: tRNA-Met
note: fMet
anticodon: (pos:34155..34157,aa:Met,seq:cat)
codon recognized: AUG
SIO_010081: PhpafMt13
subclass of: SO_0000673
so part of: PhpafMt13
location: 34122..34194
location: region:34122-34194:1
so has part: feature:34122-34194:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:34122-34194:1:exon

PhpafMr03
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: rrn26
locus tag: PhpafMr03
so part of: sequence
location: 34569..37514
location: region:34569-37514:1
so has part: feature:34569-37514:1:exon
subclass of: SO_0000573

3989113
type: Gene
SIO_000068: ncbigene

position:34569:1
position: 34569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37514:1
position: 37514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34569-37514:1:exon

PhpafMr03
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 3218
gene: rrn26
locus tag: PhpafMr03
product: 26S ribosomal RNA
SIO_010081: PhpafMr03
subclass of: SO_0000673
so part of: PhpafMr03
location: 34569..37514
location: region:34569-37514:1
so has part: feature:34569-37514:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:34569-37514:1:exon

PhpafMp16
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: ORF187
locus tag: PhpafMp16
so part of: sequence
location: 40074..40637
location: region:40074-40637:1
so has part: feature:40074-40637:1:exon
subclass of: SO_0000010

3989063
type: Gene
SIO_000068: ncbigene

position:40074:1
position: 40074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40637:1
position: 40637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40074-40637:1:exon

PhpafMp16
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3218
gene: ORF187
locus tag: PhpafMp16
note: Marchantia polymorpha ORF168 like protein
codon start: 1
product: hypothetical protein
translation: MLIKQIVIRKKAQEIEKKSPYILLFHCSGLTSRQWRQLKNLLCAFRGRTLFQPNYKGKLPHKNKQGGFIEQLAYSAGPTCILYLTKEAPDNTWSQLLPSASYNQNLVLLYGQLQSTLVNHMDIKKAANLEITSVFQQLFELIFYPYNSLCFCLNKPIDASPTIQEKTQGGPKAEDTHCRNLGPHFAN
SIO_010081: PhpafMp16
subclass of: SO_0000673
so part of: PhpafMp16
location: 40074..40637
location: region:40074-40637:1
so has part: feature:40074-40637:1:exon

YP_539015.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:40074-40637:1:exon

PhpafMt14
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
locus tag: PhpafMt14
so part of: sequence
location: complement(40789..40861)
location: region:40789-40861:-1
so has part: feature:40789-40861:-1:exon
subclass of: SO_0000663

3989082
type: Gene
SIO_000068: ncbigene

position:40789:-1
position: 40789
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:40861:-1
position: 40861
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40789-40861:-1:exon

PhpafMt14
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3218
locus tag: PhpafMt14
product: tRNA-His
anticodon: (pos:complement(40825..40827),aa:His,seq:gtg)
codon recognized: CAC
SIO_010081: PhpafMt14
subclass of: SO_0000673
so part of: PhpafMt14
location: complement(40789..40861)
location: region:40789-40861:-1
so has part: feature:40789-40861:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:40789-40861:-1:exon

PhpafMt15
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
locus tag: PhpafMt15
so part of: sequence
location: complement(40891..40970)
location: region:40891-40970:-1
so has part: feature:40891-40970:-1:exon
subclass of: SO_0000663

3989083
type: Gene
SIO_000068: ncbigene

position:40891:-1
position: 40891
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:40970:-1
position: 40970
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40891-40970:-1:exon

PhpafMt15
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3218
locus tag: PhpafMt15
product: tRNA-Leu
anticodon: (pos:complement(40934..40936),aa:Leu,seq:caa)
codon recognized: UUG
SIO_010081: PhpafMt15
subclass of: SO_0000673
so part of: PhpafMt15
location: complement(40891..40970)
location: region:40891-40970:-1
so has part: feature:40891-40970:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:40891-40970:-1:exon

PhpafMt16
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
locus tag: PhpafMt16
so part of: sequence
location: complement(40972..41051)
location: region:40972-41051:-1
so has part: feature:40972-41051:-1:exon
subclass of: SO_0000663

3989084
type: Gene
SIO_000068: ncbigene

position:40972:-1
position: 40972
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:41051:-1
position: 41051
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40972-41051:-1:exon

PhpafMt16
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3218
locus tag: PhpafMt16
product: tRNA-Leu
anticodon: (pos:complement(41015..41017),aa:Leu,seq:taa)
codon recognized: UUA
SIO_010081: PhpafMt16
subclass of: SO_0000673
so part of: PhpafMt16
location: complement(40972..41051)
location: region:40972-41051:-1
so has part: feature:40972-41051:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:40972-41051:-1:exon

PhpafMp17
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: nad5
locus tag: PhpafMp17
so part of: sequence
location: 42548..48642
location: region:42548-48642:1
so has part: feature:42548-48642:1:exon
subclass of: SO_0000010

3989059
type: Gene
SIO_000068: ncbigene

position:42548:1
position: 42548
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:48642:1
position: 48642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42548-48642:1:exon

PhpafMp17
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3218
gene: nad5
locus tag: PhpafMp17
codon start: 1
product: NADH dehydrogenase subunit 5
translation: MYLLIVTLPLLGSCVAGAFGRFLGLRGTAIVTTTCVSLSFILSLIAFYEVALGASACYIKIAPWIFSEMFDASWGFFFDSLTVVMLIVVTFVSSLVHLYSISYMSEDPHSPRFMCYLSIFTFFMLMLVTGDNFIQLFLGWEGVGLASYLLINFWFTRLQANKAAIKAMLVNRVGDFGLALGIMGCFTIFQTVDFSTIFARASAFSEPHHYFIFCNMRFHAITVICILLFIGAVGKSAQIGLHTRLPDAMEEPTPVSALIHAATMVTAGVFMIARCSPLFEYSPTALIVITFVGAMTSFFAATTGILQNDLKRVIAYSTCSQLGYMIFACGISNYSVSVFHLMNHAFFKALLFLSAGSVIHAMSDEQDMRKMGGLASLLPFTYAMMLIGSLSLIGFPFCTGFYSKDVILELAYTKYTISGNFAFWLGSISVFFTSYYSFRLLFLTFLAPTNSFKRDILRCHDAPILMAIPLIFLAFGSIFVGYVAKDMMIGLGTNFWANSLFILPKNEILAESEFATPTIIKLIPLLFSTLGAFMAYNINFVANPLIFALKTSTFGNRLYCFLNKRWFFDKIFNDFILRFFLRFGYEVSFKVLDKGAIEILGPYGISYTFRKLAKQISKLQSGFVYHYAFVMLIGLTIFITIIGLWDFISFWVDNRLYFIYIVSFLFXHFEKDISTN
SIO_010081: PhpafMp17
subclass of: SO_0000673
so part of: PhpafMp17
location: join(42548..42778,43610..44129,44815..45518,48067..48642)
location: region:42548-48642:1
so has part: feature:42548-42778:1:exon
so has part: feature:43610-44129:1:exon
so has part: feature:44815-45518:1:exon
so has part: feature:48067-48642:1:exon

YP_539016.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:42548-42778:1:exon

position:42778:1
position: 42778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:43610-44129:1:exon

position:43610:1
position: 43610
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44129:1
position: 44129
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:44815-45518:1:exon

position:44815:1
position: 44815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:45518:1
position: 45518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:48067-48642:1:exon

position:48067:1
position: 48067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PhpafMp18
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: ORF533
locus tag: PhpafMp18
so part of: sequence
location: 46175..47776
location: region:46175-47776:1
so has part: feature:46175-47776:1:exon
subclass of: SO_0000010

3989064
type: Gene
SIO_000068: ncbigene

position:46175:1
position: 46175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47776:1
position: 47776
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:46175-47776:1:exon

PhpafMp18
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3218
gene: ORF533
locus tag: PhpafMp18
note: maturase (reverse transcriptase)
codon start: 1
product: group II intron-associated open reading frame
translation: MSRFYIDTQTIPWEQIPWPKVEAVVFRLQTRIYQASRSNNMDKMRALQFRLIRNLHARLLAVRQVTQENPRKKDPDIYKKLVASGSQKIEMARGLQLDGKATPIRQIIIAKPRKEEERLRKLRAKKKYRFCCAFSALGARKRRVNQVRFAPGKWKAKNNLYFFFRTKLCVFSSLWPICVIEDRAKQALAKMALESEWEARFEPNSYGFRPGRSCQDAIKAIFLAIRAKPKYVLNADISKSFDRINHQALLDKLKTLPNLAKQVKAWLKVDLMTGLGNNAQYMERGTYGVISPLLANIALHGMETALTQWSLRAYPKEPTPILVRYANDFVVLHQSKEVIEQAQAFLREWLKCMGLELHSDKIQIVNTGSGFQFLGFSINHIWKWGKVKTLITPSRESRWRFLEDIRRAIQFSKGKAAYQLIITLVPKIVGWGHYFKYSECNNIFRRLDHDIFQKIRAWVYRRHPTWGRDKIKQKYFPEKRSWLFEGKVYQDNWILYDSYTTAFGVKKEYYLVKLSWIASHKHIKARQDKSPIK
SIO_010081: PhpafMp18
subclass of: SO_0000673
so part of: PhpafMp18
location: 46175..47776
location: region:46175-47776:1
so has part: feature:46175-47776:1:exon

YP_539017.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:46175-47776:1:exon

PhpafMp19
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: nad4
locus tag: PhpafMp19
so part of: sequence
location: 49261..51528
location: region:49261-51528:1
so has part: feature:49261-51528:1:exon
subclass of: SO_0000010

3989057
type: Gene
SIO_000068: ncbigene

position:49261:1
position: 49261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:51528:1
position: 51528
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49261-51528:1:exon

PhpafMp19
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3218
gene: nad4
locus tag: PhpafMp19
codon start: 1
product: NADH dehydrogenase subunit 4
translation: MLQFLAPFYSNLSGLILCPLLGSIILFVIPDPRIRLIRSIGLCTSLITFLYSLLFWIQFDNSTAKFQFVETIRWLPYSNINFYIGIDGISSFFVVLTTFLIPICILVGWSSIKSYKKEYMIAFLILESFMIAVFCMLDLLLFYVFFESVLIPMFIIIGVWGSRQRKIQAAYQFFLYTLLGSVFMLLAILFIFFQTGTTDLQILLTTEFSERRQILLWIAFFASFSVKVPMIPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATLXFTPFIYTLSVIAIIYTSLTTIRQIDLKKIIAYSSVAHMNFVTIGMFSLNIQGIEGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVKYYGGLVSTMPMFSTIFLFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVIFGNFKPKFLQKFSDLNRREVLIFFPFIVGVIWMGVYPEVFLECMHTSVSNLVQHGKFD
SIO_010081: PhpafMp19
subclass of: SO_0000673
so part of: PhpafMp19
location: join(49261..49721,50502..51528)
location: region:49261-51528:1
so has part: feature:49261-49721:1:exon
so has part: feature:50502-51528:1:exon

YP_539018.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:49261-49721:1:exon

position:49721:1
position: 49721
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:50502-51528:1:exon

position:50502:1
position: 50502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PhpafMp20
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: nad2
locus tag: PhpafMp20
so part of: sequence
location: 51555..53987
location: region:51555-53987:1
so has part: feature:51555-53987:1:exon
subclass of: SO_0000010

3989055
type: Gene
SIO_000068: ncbigene

position:51555:1
position: 51555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:53987:1
position: 53987
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:51555-53987:1:exon

PhpafMp20
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3218
gene: nad2
locus tag: PhpafMp20
codon start: 1
product: NADH dehydrogenase subunit 2
translation: MFEHDFLALFPEIFLINATIILLIYGVVFSTSKKYDYPPLVCNVSWLGLLSVLITILLLASSTPLTVANLFYNNLIIDHFTYFCQIFLLVSTASTIVMCLGYFKEESLNAFESIILILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRDSEFSTEAGLKYFILGAFSSGILLFGCSMIYGFTGVTNFEELAKIFTGYEITLFGAQSSGIFMGILFIAVGFLFKITAVPFHMWAPDVYEGSPTLVTAFFSIAPKISILANMVRVFIYSFYDPTWQQLFFFCSIASMILGALAAMAQNKVKRLLAYSSIGHVGYLFIGFSCGTIEGIQSLLIGVFIYVLMTINVFAIVLALRQNRFKYIADLGALAKTNPILAITLSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYLLALIGVVTSVISCFYYIRFVKIMYFDTPKKWILYKPMDREKSLLLAITLFLISFFFLYPSPLFLVSHQMALSLCL
SIO_010081: PhpafMp20
subclass of: SO_0000673
so part of: PhpafMp20
location: join(51555..51710,52674..53987)
location: region:51555-53987:1
so has part: feature:51555-51710:1:exon
so has part: feature:52674-53987:1:exon

YP_539019.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:51555-51710:1:exon

position:51710:1
position: 51710
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:52674-53987:1:exon

position:52674:1
position: 52674
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PhpafMt17
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
locus tag: PhpafMt17
so part of: sequence
location: complement(54446..54517)
location: region:54446-54517:-1
so has part: feature:54446-54517:-1:exon
subclass of: SO_0000663

3989085
type: Gene
SIO_000068: ncbigene

position:54446:-1
position: 54446
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:54517:-1
position: 54517
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:54446-54517:-1:exon

PhpafMt17
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3218
locus tag: PhpafMt17
product: tRNA-Gly
anticodon: (pos:complement(54483..54485),aa:Gly,seq:gcc)
codon recognized: GGC
SIO_010081: PhpafMt17
subclass of: SO_0000673
so part of: PhpafMt17
location: complement(54446..54517)
location: region:54446-54517:-1
so has part: feature:54446-54517:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:54446-54517:-1:exon

PhpafMt18
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
locus tag: PhpafMt18
so part of: sequence
location: complement(54609..54682)
location: region:54609-54682:-1
so has part: feature:54609-54682:-1:exon
subclass of: SO_0000663

3989086
type: Gene
SIO_000068: ncbigene

position:54609:-1
position: 54609
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:54682:-1
position: 54682
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:54609-54682:-1:exon

PhpafMt18
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3218
locus tag: PhpafMt18
product: tRNA-Arg
anticodon: (pos:complement(54646..54648),aa:Arg,seq:acg)
codon recognized: CGU
SIO_010081: PhpafMt18
subclass of: SO_0000673
so part of: PhpafMt18
location: complement(54609..54682)
location: region:54609-54682:-1
so has part: feature:54609-54682:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:54609-54682:-1:exon

PhpafMt19
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
locus tag: PhpafMt19
so part of: sequence
location: 55297..55396
location: region:55297-55396:1
so has part: feature:55297-55396:1:exon
subclass of: SO_0000663

3989087
type: Gene
SIO_000068: ncbigene

position:55297:1
position: 55297
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:55396:1
position: 55396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:55297-55396:1:exon

PhpafMt19
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3218
locus tag: PhpafMt19
product: tRNA-Glu
anticodon: (pos:55350..55352,aa:Glu,seq:ttc)
codon recognized: GAA
SIO_010081: PhpafMt19
subclass of: SO_0000673
so part of: PhpafMt19
location: 55297..55396
location: region:55297-55396:1
so has part: feature:55297-55396:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:55297-55396:1:exon

PhpafMp21
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: rps12
locus tag: PhpafMp21
so part of: sequence
location: 55694..56074
location: region:55694-56074:1
so has part: feature:55694-56074:1:exon
subclass of: SO_0000010

3989104
type: Gene
SIO_000068: ncbigene

position:55694:1
position: 55694
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:56074:1
position: 56074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:55694-56074:1:exon

PhpafMp21
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3218
gene: rps12
locus tag: PhpafMp21
codon start: 1
product: ribosomal protein S12
translation: MPTINQLIRHGRKSKRRTQRTRALTQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLTNRNEIIAYIPGEGHNLQEHSVVMVRGGRAKDLPGVKYHCIRGVKDLQGIPGRRRGRSKYGTKKPKDSI
SIO_010081: PhpafMp21
subclass of: SO_0000673
so part of: PhpafMp21
location: 55694..56074
location: region:55694-56074:1
so has part: feature:55694-56074:1:exon

YP_539020.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:55694-56074:1:exon

PhpafMp22
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: rps7
locus tag: PhpafMp22
so part of: sequence
location: 56071..56790
location: region:56071-56790:1
so has part: feature:56071-56790:1:exon
subclass of: SO_0000010

3989111
type: Gene
SIO_000068: ncbigene

position:56071:1
position: 56071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:56790:1
position: 56790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:56071-56790:1:exon

PhpafMp22
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3218
gene: rps7
locus tag: PhpafMp22
codon start: 1
product: ribosomal protein S7
translation: MNLFVKSSNFSFVFGSSLDWFHQSKLSEKAGMKKNENWPFSGKNLFFFSESFFARRLLHCRYLCYALEGHVPSTPKGRGASTYNSSDNLGYIRGLHGKQKQLIKKLVHICMIDGKKTRSRAIVYKTFHCLAQHGDILRLLVNAIENVKPVCEVKKVRISGTTQLVPSIIATNRQETLAIRWMLEAAAKRHMNKKSMSLDQCLADEILDASRKMGIARKKRDDLHKLAQANRSFSHYRWW
SIO_010081: PhpafMp22
subclass of: SO_0000673
so part of: PhpafMp22
location: 56071..56790
location: region:56071-56790:1
so has part: feature:56071-56790:1:exon

YP_539021.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:56071-56790:1:exon

PhpafMp23
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: atp6
locus tag: PhpafMp23
so part of: sequence
location: complement(57523..58893)
location: region:57523-58893:-1
so has part: feature:57523-58893:-1:exon
subclass of: SO_0000010

3989095
type: Gene
SIO_000068: ncbigene

position:57523:-1
position: 57523
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:58893:-1
position: 58893
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:57523-58893:-1:exon

PhpafMp23
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3218
gene: atp6
locus tag: PhpafMp23
codon start: 1
product: ATP synthase F0 subunit 6
translation: MACSPLEQFAIIPLIPIHIGNFYLSFTNSSLFMLLTISLVLLLVHFVTLNGGHLVPNAWQSFVEIIYDFVLNLVNEQISGPSSMKQRFFPLIFVTFTFLLFCNLIGMIPYSFTVTSHFIITLGLSLSLFIGITIVGFQTHGLHFFSFLLPQGVPLPLAPFLVLLELISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLSMGGIMYLAHLAPFLIVFALTGLELGVAILQAYVFTILICIYLNDAINLH
SIO_010081: PhpafMp23
subclass of: SO_0000673
so part of: PhpafMp23
location: complement(join(57526..58204,58814..58893))
location: region:57526-58893:-1
so has part: feature:58814-58893:-1:exon
so has part: feature:57526-58204:-1:exon

YP_539022.1
type: Protein
SIO_000068: ncbiprotein

position:57526:-1
position: 57526
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:58814-58893:-1:exon

position:58814:-1
position: 58814
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:57526-58204:-1:exon

position:58204:-1
position: 58204
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PhpafMp24
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: nad6
locus tag: PhpafMp24
so part of: sequence
location: 60139..60744
location: region:60139-60744:1
so has part: feature:60139-60744:1:exon
subclass of: SO_0000010

3989060
type: Gene
SIO_000068: ncbigene

position:60139:1
position: 60139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:60744:1
position: 60744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:60139-60744:1:exon

PhpafMp24
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3218
gene: nad6
locus tag: PhpafMp24
codon start: 1
product: NADH dehydrogenase subunit 6
translation: MILFSVFSSIALVSSVMVIRAKNPVHSVLFFILVFFNTSGLLVLLGLDFFAMIFLVVYVGAIAVLFLFVVMMLNIKIAEIHENVLRYLPVGGIIGVIFLLEIFFIVDNDYIPILPTKLSTTYLTYTVYAEKIQSWTNLETLGNLLYTTYFVLFLVSSLILLVAMIGAIVLTMHKTTQVKRQDVFRQNAIDFKNTIKKIRDI
SIO_010081: PhpafMp24
subclass of: SO_0000673
so part of: PhpafMp24
location: 60139..60744
location: region:60139-60744:1
so has part: feature:60139-60744:1:exon

YP_539023.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:60139-60744:1:exon

PhpafMp25
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: cox2
locus tag: PhpafMp25
so part of: sequence
location: 64380..67498
location: region:64380-67498:1
so has part: feature:64380-67498:1:exon
subclass of: SO_0000010

3989052
type: Gene
SIO_000068: ncbigene

position:64380:1
position: 64380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:67498:1
position: 67498
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:64380-67498:1:exon

PhpafMp25
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3218
gene: cox2
locus tag: PhpafMp25
codon start: 1
product: cytochrome oxidase subunit 2
translation: MSLKNTWLFPIAYCDAAEPWQLGFQDAATPMMQGIIDLHHDIFFFLIIILIFVLWMLVRALWHFHYKRNPIPERVVHGTTIEIIWTIFPSIILMFIAIPSFALLYSMDEVVDPTITIKAIGHQRYWTYEYSDYNSSDEQSLTFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRMIITSADVLHSWAVPSLGVKCDAVPGRLNQTSIFIKREGVYYGQCSELCGTNHAFMRAPE
SIO_010081: PhpafMp25
subclass of: SO_0000673
so part of: PhpafMp25
location: join(64380..64489,65519..65787,67167..67498)
location: region:64380-67498:1
so has part: feature:64380-64489:1:exon
so has part: feature:65519-65787:1:exon
so has part: feature:67167-67498:1:exon

YP_539024.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:64380-64489:1:exon

position:64489:1
position: 64489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:65519-65787:1:exon

position:65519:1
position: 65519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:65787:1
position: 65787
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:67167-67498:1:exon

position:67167:1
position: 67167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PhpafMp26
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: cox3
locus tag: PhpafMp26
so part of: sequence
location: 68989..70617
location: region:68989-70617:1
so has part: feature:68989-70617:1:exon
subclass of: SO_0000010

3989053
type: Gene
SIO_000068: ncbigene

position:68989:1
position: 68989
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:70617:1
position: 70617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:68989-70617:1:exon

PhpafMp26
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3218
gene: cox3
locus tag: PhpafMp26
codon start: 1
product: cytochrome oxidase subunit 3
translation: MSVSQKHPYHLVDPSPWPLLGSLGALASTIGGVMYMHSFTGGGTLLSLGLGMILYTMFVWWRDVIRESTYEGHHTFVVQLGLRYGMILFIVSEVMFFLAFFWAFFHSSLAPTVEIGAIWPPKGIDVLNPWGIPFLNTLILLSSGAAVTWAHHAILAGFKKQAVYALVATILLALVFTGFQGMEYVEAPFTISDGIYGSTFFLATGFHGFHVIIGTIFLIICAIRQYLGHFTQTHHFGFEAAAWYRHFVDVVWLFLFVSIYWWGGN
SIO_010081: PhpafMp26
subclass of: SO_0000673
so part of: PhpafMp26
location: join(68989..69494,70326..70617)
location: region:68989-70617:1
so has part: feature:68989-69494:1:exon
so has part: feature:70326-70617:1:exon

YP_539025.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:68989-69494:1:exon

position:69494:1
position: 69494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:70326-70617:1:exon

position:70326:1
position: 70326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PhpafMp27
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: nad1
locus tag: PhpafMp27
so part of: sequence
location: 71982..74565
location: region:71982-74565:1
so has part: feature:71982-74565:1:exon
subclass of: SO_0000010

3989054
type: Gene
SIO_000068: ncbigene

position:71982:1
position: 71982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:74565:1
position: 74565
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:71982-74565:1:exon

PhpafMp27
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3218
gene: nad1
locus tag: PhpafMp27
codon start: 1
product: NADH dehydrogenase subunit 1
translation: MRLYIIGILAKILGIIIPLLLGVAFLVLAERKVMASMQRRKGPNVVGLFGLLQPLADGLKLMIKEPILPSSANLFIFIMAPVITFMLSLVAWAVIPFDYGMVLSDLNVGILYLFAISSLGVYGIITAGWSSNSKYAFLGALRSAAQMVSYEVSIGLIIITVLICVGSCNFSEIVIAQKQIWFGIPLFPVFIMFFISCLAETNRAPFDLPEAEAELVAGYNVEYSSMGFALFFLGEYANMILMSSLCTLLFLGGWLPILDIPIFHVIPGSIWFSIKVLFFLFVYIWVRAAFPRYRYDQLMRLGWKVFLPLSLAWVVFVSGVLVAFDWLP
SIO_010081: PhpafMp27
subclass of: SO_0000673
so part of: PhpafMp27
location: join(71982..72268,73028..73468,74307..74565)
location: region:71982-74565:1
so has part: feature:71982-72268:1:exon
so has part: feature:73028-73468:1:exon
so has part: feature:74307-74565:1:exon

YP_539026.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:71982-72268:1:exon

position:72268:1
position: 72268
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:73028-73468:1:exon

position:73028:1
position: 73028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:73468:1
position: 73468
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:74307-74565:1:exon

position:74307:1
position: 74307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PhpafMp28
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: cob
locus tag: PhpafMp28
so part of: sequence
location: 74887..77061
location: region:74887-77061:1
so has part: feature:74887-77061:1:exon
subclass of: SO_0000010

3989050
type: Gene
SIO_000068: ncbigene

position:74887:1
position: 74887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:77061:1
position: 77061
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:74887-77061:1:exon

PhpafMp28
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3218
gene: cob
locus tag: PhpafMp28
codon start: 1
product: cytochrome b
translation: MARRLSILKQPIFSTFNNHLIDYPTPSNISYWWSFGSLAGLCLFIQIITGVFLAMHYTPHVDLAFLSVEHIMRDVKGGWLLRYMHANGASMFFIVVYLHIFRGLYYGSYSSPRELVWCLGVVILLLMIITAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHYLLPFIISAAVIIHLAALHQYGSNNPLGINSSVDKIAFYPYMYVKDLVCWVAFAIFFSIFIFYAPNVLGHPDNYIPANPMSTPAHIVPEWYFLPVYAILRSIPNKLGGVAAIGLVFVSLFALPFINTSYVRSSSFRPIHQKLFWLLLADCLLLGWIGCQPVEAPYVTIGQIASVGFFFYFAITPILGELEARLIQNSNVCEDLSPRKLSHIFKNSIYVVK
SIO_010081: PhpafMp28
subclass of: SO_0000673
so part of: PhpafMp28
location: join(74887..75306,76261..77061)
location: region:74887-77061:1
so has part: feature:74887-75306:1:exon
so has part: feature:76261-77061:1:exon

YP_539027.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:74887-75306:1:exon

position:75306:1
position: 75306
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:76261-77061:1:exon

position:76261:1
position: 76261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PhpafMp29
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: nad9
locus tag: PhpafMp29
so part of: sequence
location: 78700..80969
location: region:78700-80969:1
so has part: feature:78700-80969:1:exon
subclass of: SO_0000010

3989062
type: Gene
SIO_000068: ncbigene

position:78700:1
position: 78700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:80969:1
position: 80969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:78700-80969:1:exon

PhpafMp29
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3218
gene: nad9
locus tag: PhpafMp29
note: Start codon is GTG
codon start: 1
transl except: (pos:78700..78702,aa:Met)
product: NADH dehydrogenase subunit 9
translation: MDNQSFFKSLIATLPKWIHQFQKSKHENILYTNPDYLFQLLWFLKYHTNTRFQVLIDICGVDYPSRKQRFEVVYNLLSIQYNSRIRVQTSVDEITPICSAVSIFPSAGWWEREVWDMFGVYFSNHPDLRRILTDYGFEGHPLRKDFPLSGYVEVRYDDSEKRVVSEPIEMTQEFRYFDFASPWEQSSRSDKSSKK
SIO_010081: PhpafMp29
subclass of: SO_0000673
so part of: PhpafMp29
location: join(78700..78931,80614..80969)
location: region:78700-80969:1
so has part: feature:78700-78931:1:exon
so has part: feature:80614-80969:1:exon

YP_539028.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:78700-78931:1:exon

position:78931:1
position: 78931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:80614-80969:1:exon

position:80614:1
position: 80614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PhpafMp30
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: atp1
locus tag: PhpafMp30
so part of: sequence
location: 81417..84134
location: region:81417-84134:1
so has part: feature:81417-84134:1:exon
subclass of: SO_0000010

3989093
type: Gene
SIO_000068: ncbigene

position:81417:1
position: 81417
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:84134:1
position: 84134
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:81417-84134:1:exon

PhpafMp30
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3218
gene: atp1
locus tag: PhpafMp30
codon start: 1
product: ATP synthase F1 subunit alpha
translation: MNKLTGNKLAGAELSTLLEQRITNYYTKLQVDEIGRVVSVGDGIARVYGLNKIQAGEMVEFASGVKGMALNLENENVGIVIFGSDTAIKEGDIVKRTGSIVDVPVGKGLLGRVVDALGVPIDGKGALSAAERRRVEVKAPGIIARKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKQINTQGTSDSEKLYCVYVAIGQKRSTVAQLVKILSEAGALEYCIIVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQSVAYRQMSLLLRRPPGREAFPGDVFYLHSRLLERAAKMSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQVCGSLKLELAQYREVAAFAQFGSDLDAATQYLLNRGARLTEVLKQPQYSPISIEKQIVVIYAAVKGYLDQIPISSINQYEHELLKSIDPDILSAIVQQKNITEQINSQLATFCQKFTQSFLATHSV
SIO_010081: PhpafMp30
subclass of: SO_0000673
so part of: PhpafMp30
location: join(81417..82559,83721..84134)
location: region:81417-84134:1
so has part: feature:81417-82559:1:exon
so has part: feature:83721-84134:1:exon

YP_539029.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:81417-82559:1:exon

position:82559:1
position: 82559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:83721-84134:1:exon

position:83721:1
position: 83721
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PhpafMt20
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
locus tag: PhpafMt20
so part of: sequence
location: complement(84763..84835)
location: region:84763-84835:-1
so has part: feature:84763-84835:-1:exon
subclass of: SO_0000663

3989088
type: Gene
SIO_000068: ncbigene

position:84763:-1
position: 84763
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:84835:-1
position: 84835
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:84763-84835:-1:exon

PhpafMt20
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3218
locus tag: PhpafMt20
product: tRNA-Trp
anticodon: (pos:complement(84794..84796),aa:Trp,seq:cca)
codon recognized: UGG
SIO_010081: PhpafMt20
subclass of: SO_0000673
so part of: PhpafMt20
location: complement(84763..84835)
location: region:84763-84835:-1
so has part: feature:84763-84835:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:84763-84835:-1:exon

PhpafMp31
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: nad3
locus tag: PhpafMp31
so part of: sequence
location: 84860..85216
location: region:84860-85216:1
so has part: feature:84860-85216:1:exon
subclass of: SO_0000010

3989056
type: Gene
SIO_000068: ncbigene

position:84860:1
position: 84860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:85216:1
position: 85216
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:84860-85216:1:exon

PhpafMp31
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3218
gene: nad3
locus tag: PhpafMp31
codon start: 1
product: NADH dehydrogenase subunit 3
translation: MEFAPICVYLVISLLLSLILIGVSFLFASSSNSAYPEKLSAYECGFDPFDDARSRFDIRFYLVSILFIIFDLEVTFSFPWAVSLNKIGLFGFWSMIVFLLILTIGFLYEWKKGALDWE
SIO_010081: PhpafMp31
subclass of: SO_0000673
so part of: PhpafMp31
location: 84860..85216
location: region:84860-85216:1
so has part: feature:84860-85216:1:exon

YP_539030.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:84860-85216:1:exon

PhpafMt21
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
locus tag: PhpafMt21
so part of: sequence
location: 86212..86284
location: region:86212-86284:1
so has part: feature:86212-86284:1:exon
subclass of: SO_0000663

3989089
type: Gene
SIO_000068: ncbigene

position:86212:1
position: 86212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:86284:1
position: 86284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:86212-86284:1:exon

PhpafMt21
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3218
locus tag: PhpafMt21
product: tRNA-Val
anticodon: (pos:86245..86247,aa:Val,seq:tac)
codon recognized: GUA
SIO_010081: PhpafMt21
subclass of: SO_0000673
so part of: PhpafMt21
location: 86212..86284
location: region:86212-86284:1
so has part: feature:86212-86284:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:86212-86284:1:exon

PhpafMt22
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
locus tag: PhpafMt22
so part of: sequence
location: 86930..87003
location: region:86930-87003:1
so has part: feature:86930-87003:1:exon
subclass of: SO_0000663

3989090
type: Gene
SIO_000068: ncbigene

position:86930:1
position: 86930
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:87003:1
position: 87003
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:86930-87003:1:exon

PhpafMt22
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3218
locus tag: PhpafMt22
product: tRNA-Asp
anticodon: (pos:86964..86966,aa:Asp,seq:gtc)
codon recognized: GAC
SIO_010081: PhpafMt22
subclass of: SO_0000673
so part of: PhpafMt22
location: 86930..87003
location: region:86930-87003:1
so has part: feature:86930-87003:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:86930-87003:1:exon

PhpafMt23
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
locus tag: PhpafMt23
so part of: sequence
location: 87823..87895
location: region:87823-87895:1
so has part: feature:87823-87895:1:exon
subclass of: SO_0000663

3989091
type: Gene
SIO_000068: ncbigene

position:87823:1
position: 87823
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:87895:1
position: 87895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:87823-87895:1:exon

PhpafMt23
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3218
locus tag: PhpafMt23
product: tRNA-Ala
anticodon: (pos:87856..87858,aa:Ala,seq:tgc)
codon recognized: GCA
SIO_010081: PhpafMt23
subclass of: SO_0000673
so part of: PhpafMt23
location: 87823..87895
location: region:87823-87895:1
so has part: feature:87823-87895:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:87823-87895:1:exon

PhpafMt24
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
locus tag: PhpafMt24
so part of: sequence
location: 88327..88399
location: region:88327-88399:1
so has part: feature:88327-88399:1:exon
subclass of: SO_0000663

3989092
type: Gene
SIO_000068: ncbigene

position:88327:1
position: 88327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:88399:1
position: 88399
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:88327-88399:1:exon

PhpafMt24
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3218
locus tag: PhpafMt24
product: tRNA-Thr
anticodon: (pos:88360..88362,aa:Thr,seq:ggt)
codon recognized: ACC
SIO_010081: PhpafMt24
subclass of: SO_0000673
so part of: PhpafMt24
location: 88327..88399
location: region:88327-88399:1
so has part: feature:88327-88399:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:88327-88399:1:exon

PhpafMp32
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: nad7
locus tag: PhpafMp32
so part of: sequence
location: 88424..91633
location: region:88424-91633:1
so has part: feature:88424-91633:1:exon
subclass of: SO_0000010

3989061
type: Gene
SIO_000068: ncbigene

position:88424:1
position: 88424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:91633:1
position: 91633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:88424-91633:1:exon

PhpafMp32
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3218
gene: nad7
locus tag: PhpafMp32
codon start: 1
product: NADH dehydrogenase subunit 7
translation: MAKTKQIKNFTLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMAQEHAYSLAVEKLCNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMDVGALTPFLWAFEEREKLLEFYERVSGARMHASYIRPGGVAQDMPLGLSEDIFLFTQQFASRIDEIEEMLTNNRIWKQRLVDIGTVTAQQALDWGFSGVMLRGSGVCWDLRKSAPYDVYNQLSFDVPVGTRGDCYDRYCIRIEEMRQSIRIIMQCLNQMPSGMIKADDRKLCPPSRSQMKQSMESLIHHFKLYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGTNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR
SIO_010081: PhpafMp32
subclass of: SO_0000673
so part of: PhpafMp32
location: join(88424..88563,89595..89663,90661..91633)
location: region:88424-91633:1
so has part: feature:88424-88563:1:exon
so has part: feature:89595-89663:1:exon
so has part: feature:90661-91633:1:exon

YP_539031.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:88424-88563:1:exon

position:88563:1
position: 88563
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:89595-89663:1:exon

position:89595:1
position: 89595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:89663:1
position: 89663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:90661-91633:1:exon

position:90661:1
position: 90661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PhpafMp33
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: rpl2
locus tag: PhpafMp33
so part of: sequence
location: 92371..93762
location: region:92371-93762:1
so has part: feature:92371-93762:1:exon
subclass of: SO_0000010

3989067
type: Gene
SIO_000068: ncbigene

position:92371:1
position: 92371
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:93762:1
position: 93762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:92371-93762:1:exon

PhpafMp33
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3218
gene: rpl2
locus tag: PhpafMp33
codon start: 1
product: ribosomal protein L2
translation: MTLKQLTFRLKKKSAGRNSSGRITVFHRGGGSKRLHRKIDFQRNTSSIGLVQRIDYDPNRSSWIALVRWLEAMKQPKAANSQTEEKAKRFLGRREQNLFFFGLLFSFSSLSRKAQRRNYVFFSALFSLKAKREAAILGPFGSFLDLPRIALAGAKPTFFASRMKDFGEHNTFSRSEGGKWKTHSGVQRIERKALSWRSNIFFSFKPKHSEEGPMVGAGKVDRAPFTYILASDQLEAGKTVMNCDWSKPSTSFDQHQSSHNLLAHNDLRFQNHFVHTTNEGQRSLRVEEPTRRSQAASGLRPGGNYASSENKNILDSYYQMVGNCVSLANIPIGTWVHNIEWNPGQGAKLIRAAGTFAQIIKKFENTPQCIVRLPSGVDKLIDSRCRATVGIVSNLHHGKRKLDKAGQSRWLGRRPIVRGVAMNPVDHPHGGGEGRTKGGRPSVSPWGKPAKGGFKTVVRKRRN
SIO_010081: PhpafMp33
subclass of: SO_0000673
so part of: PhpafMp33
location: 92371..93762
location: region:92371-93762:1
so has part: feature:92371-93762:1:exon

YP_539032.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:92371-93762:1:exon

PhpafMp34
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: rps19
locus tag: PhpafMp34
so part of: sequence
location: 93766..94047
location: region:93766-94047:1
so has part: feature:93766-94047:1:exon
subclass of: SO_0000010

3989107
type: Gene
SIO_000068: ncbigene

position:93766:1
position: 93766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:94047:1
position: 94047
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:93766-94047:1:exon

PhpafMp34
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3218
gene: rps19
locus tag: PhpafMp34
codon start: 1
product: ribosomal protein S19
translation: MTRSVWKGPFVDACLFKQKKIRWKIWSRRSCILPQFVGCYAQIYNGKGSVGLKITEEMVGHKFGEFASTRKPSSSGKRASPSKTKIRQKKKVR
SIO_010081: PhpafMp34
subclass of: SO_0000673
so part of: PhpafMp34
location: 93766..94047
location: region:93766-94047:1
so has part: feature:93766-94047:1:exon

YP_539033.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:93766-94047:1:exon

PhpafMp35
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: rps3
locus tag: PhpafMp35
so part of: sequence
location: 94054..95661
location: region:94054-95661:1
so has part: feature:94054-95661:1:exon
subclass of: SO_0000010

3989109
type: Gene
SIO_000068: ncbigene

position:94054:1
position: 94054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:95661:1
position: 95661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:94054-95661:1:exon

PhpafMp35
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3218
gene: rps3
locus tag: PhpafMp35
codon start: 1
product: ribosomal protein S3
translation: MAQKINPISVRLNLNRSSDSSWFSDYYYGKLLYQDVNFRDYFDLIRPPTGKTFGFRLGKFIIHHFPKRTFIHVFFLDRLSRSRHTGLGAIQSVKLIRRIDDATEIQRNEVKSRRYGYDDRLPSMHEIDQLLRISGWMASKNSTSLKNDALLENDDRKMSEKSYAFSRFGSLRQISDVFPQTIFAAVRAPLNHLVMQYFFHPKNRIQFDPIVNIVSDLAARSRYMPEEAKKKEDSLKERMRSILLNKSICSKKEGLTYMDKTAQGSYVEALRGSTHFIRQADKVGFARKNRPEISPNIQTAYSVWLSSEASNSGRTEMRSAEELLALRTALPSFARARMFPHQNALHCLRKQSLLRLHFQIHREQGMPLANNYIIKSTEPIRQPWSILDFGAPFISRDAEWRKVHSLFSRYYYWKKMQFFLSNQTKTNTLIRPVKIASVYQSASLIAQEISWKLEQKKSFRQICRSTFQQIEKCQYVKGIRICCSGRLNGAEIAKTECRKYGETSLHVFSDQIDYAKAQASTPYGILGVKVWVSYF
SIO_010081: PhpafMp35
subclass of: SO_0000673
so part of: PhpafMp35
location: 94054..95661
location: region:94054-95661:1
so has part: feature:94054-95661:1:exon

YP_539034.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:94054-95661:1:exon

PhpafMp36
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: rpl16
locus tag: PhpafMp36
so part of: sequence
location: 95682..96089
location: region:95682-96089:1
so has part: feature:95682-96089:1:exon
subclass of: SO_0000010

3989066
type: Gene
SIO_000068: ncbigene

position:95682:1
position: 95682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:96089:1
position: 96089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:95682-96089:1:exon

PhpafMp36
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3218
gene: rpl16
locus tag: PhpafMp36
note: Start codon is GTG
codon start: 1
transl except: (pos:95682..95684,aa:Met)
product: ribosomal protein L16
translation: MLYPKRTKFRKYQKGRFKGCKADGTQLCFGKYGMKSCEAGRISYQAIEAARRAISREFRRNGQIWVRVFADIPITSKPTEVRMGKGKGNSTGWIARVVEGQILFEMDGVSLSNAQQAATLAAHKLCLSTKFVQWF
SIO_010081: PhpafMp36
subclass of: SO_0000673
so part of: PhpafMp36
location: 95682..96089
location: region:95682-96089:1
so has part: feature:95682-96089:1:exon

YP_539035.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:95682-96089:1:exon

PhpafMp37
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: rpl5
locus tag: PhpafMp37
so part of: sequence
location: 96901..97461
location: region:96901-97461:1
so has part: feature:96901-97461:1:exon
subclass of: SO_0000010

3989068
type: Gene
SIO_000068: ncbigene

position:96901:1
position: 96901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:97461:1
position: 97461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:96901-97461:1:exon

PhpafMp37
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3218
gene: rpl5
locus tag: PhpafMp37
codon start: 1
product: ribosomal protein L5
translation: MFTPNRLRFHYENLLRQDLLLKLNYANIMEVPRLCKIIIVPKAPSNLIKNVKLAMEIVCGQKFIQTRSRDSAGKSFRFNKFILNRESKKDTGYVTYLAQSTLRGHTMYNFLEKLITIISFYDYPVKVQKSSIQLSMPTSLLRLFPEIQNHFEIFEHIQGFDVTIVTSAKTQDEAFILWSGFLQKEV
SIO_010081: PhpafMp37
subclass of: SO_0000673
so part of: PhpafMp37
location: 96901..97461
location: region:96901-97461:1
so has part: feature:96901-97461:1:exon

YP_539036.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:96901-97461:1:exon

PhpafMp38
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: rps14
locus tag: PhpafMp38
so part of: sequence
location: 97466..97765
location: region:97466-97765:1
so has part: feature:97466-97765:1:exon
subclass of: SO_0000010

3989106
type: Gene
SIO_000068: ncbigene

position:97466:1
position: 97466
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:97765:1
position: 97765
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:97466-97765:1:exon

PhpafMp38
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3218
gene: rps14
locus tag: PhpafMp38
codon start: 1
product: ribosomal protein S14
translation: MSNQIIRDHTRRLLVAKYELERMQCKAISRHKNLPNQIRYEYFLKSSKLPRNSSRTRVRNRCIFTGRPRSVYKLFRVSRIVFRELASKGSLIGINKSCW
SIO_010081: PhpafMp38
subclass of: SO_0000673
so part of: PhpafMp38
location: 97466..97765
location: region:97466-97765:1
so has part: feature:97466-97765:1:exon

YP_539037.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:97466-97765:1:exon

PhpafMp39
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: rpl6
locus tag: PhpafMp39
so part of: sequence
location: 99302..99607
location: region:99302-99607:1
so has part: feature:99302-99607:1:exon
subclass of: SO_0000010

3989101
type: Gene
SIO_000068: ncbigene

position:99302:1
position: 99302
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:99607:1
position: 99607
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:99302-99607:1:exon

PhpafMp39
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3218
gene: rpl6
locus tag: PhpafMp39
codon start: 1
product: ribosomal protein L6
translation: MEAKLFCFLEIIGVGYKASTNPQGSILYLKLGFSHEIRLQVTSAVRVFCFKPNLICCTGIDHQKVTQFAASIKSCKPPEVYKGKGIQYRNEILHKKQGKKK
SIO_010081: PhpafMp39
subclass of: SO_0000673
so part of: PhpafMp39
location: 99302..99607
location: region:99302-99607:1
so has part: feature:99302-99607:1:exon

YP_539038.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:99302-99607:1:exon

PhpafMp40
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: rps13
locus tag: PhpafMp40
so part of: sequence
location: 99611..99979
location: region:99611-99979:1
so has part: feature:99611-99979:1:exon
subclass of: SO_0000010

3989105
type: Gene
SIO_000068: ncbigene

position:99611:1
position: 99611
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:99979:1
position: 99979
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:99611-99979:1:exon

PhpafMp40
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3218
gene: rps13
locus tag: PhpafMp40
codon start: 1
product: ribosomal protein S13
translation: MSYILGTNLVPNEQVEIALTRIFGLGPKKAIQVCDQLGLNDNIKVNKLTKYQIDRIIKIISQNYLVDLELARVIQRDIKQLMSIGCYRGFRHNAGLPLRGQRTHTNAKTCRKVRNVSINQRS
SIO_010081: PhpafMp40
subclass of: SO_0000673
so part of: PhpafMp40
location: 99611..99979
location: region:99611-99979:1
so has part: feature:99611-99979:1:exon

YP_539039.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:99611-99979:1:exon

PhpafMp41
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: rps11
locus tag: PhpafMp41
so part of: sequence
location: 100432..100788
location: region:100432-100788:1
so has part: feature:100432-100788:1:exon
subclass of: SO_0000010

3989103
type: Gene
SIO_000068: ncbigene

position:100432:1
position: 100432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:100788:1
position: 100788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:100432-100788:1:exon

PhpafMp41
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3218
gene: rps11
locus tag: PhpafMp41
codon start: 1
product: ribosomal protein S11
translation: MQKKKKHGIAYIRSTLSNTIITVTDYKGDTKTWSSSGSLGFKGSRRSTNYAAQATAENAARTAIQLGIKSVEVEIKGLGYGKESSLRGLRLGGLIITKIRDVTPTPHNGCRPPKKRRV
SIO_010081: PhpafMp41
subclass of: SO_0000673
so part of: PhpafMp41
location: 100432..100788
location: region:100432-100788:1
so has part: feature:100432-100788:1:exon

YP_539040.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:100432-100788:1:exon

PhpafMp42
type: Gene
subclass of: SO_0000704
RO_0002162: 3218
gene: atp9
locus tag: PhpafMp42
so part of: sequence
location: 101284..105019
location: region:101284-105019:1
so has part: feature:101284-105019:1:exon
subclass of: SO_0000010

3989097
type: Gene
SIO_000068: ncbigene

position:101284:1
position: 101284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:105019:1
position: 105019
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:101284-105019:1:exon

PhpafMp42
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3218
gene: atp9
locus tag: PhpafMp42
codon start: 1
product: ATP synthase F0 subunit 9
translation: MLEGAKLIGAGAATIALAGAAIGIGNVFSSSIHSVARNPSLAKQLFGYAILGFALTEAIALFALMMAFLILFVF
SIO_010081: PhpafMp42
subclass of: SO_0000673
so part of: PhpafMp42
location: join(101284..101304,102443..102508,103678..103685,104890..105019)
location: region:101284-105019:1
so has part: feature:101284-101304:1:exon
so has part: feature:102443-102508:1:exon
so has part: feature:103678-103685:1:exon
so has part: feature:104890-105019:1:exon

YP_539041.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:101284-101304:1:exon

position:101304:1
position: 101304
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:102443-102508:1:exon

position:102443:1
position: 102443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:102508:1
position: 102508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:103678-103685:1:exon

position:103678:1
position: 103678
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:103685:1
position: 103685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:104890-105019:1:exon

position:104890:1
position: 104890
reference: sequence
type: ForwardStrandPosition
type: ExactPosition