Deinococcus radiophilus strain ATCC 27603 plasmid pRadio1, complete sequence.
Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.
Single Nanopore flow cell sequencing of Deinococcus radiophilus hints at prophage related plasmids: An amateur research perspective
Submitted (04-NOV-2021) Research, Binomica Labs, 4301 22nd St 3FL Studio 342, Long Island City, NY 11101, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP086381.1.\nBacteria and source DNA available from ATCC 27603 - Carolina\nBiological Supply.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 11-SEP-2020\nAssembly Method :: Trycycler v. 0.3.2\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 800.0x\nSequencing Technology :: Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/06/2022 04:26:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,840\nCDSs (total) :: 2,779\nGenes (coding) :: 2,720\nCDSs (with protein) :: 2,720\nGenes (RNA) :: 61\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 3\nPseudo Genes (total) :: 59\nCDSs (without protein) :: 59\nPseudo Genes (ambiguous residues) :: 0 of 59\nPseudo Genes (frameshifted) :: 28 of 59\nPseudo Genes (incomplete) :: 30 of 59\nPseudo Genes (internal stop) :: 12 of 59\nPseudo Genes (multiple problems) :: 10 of 59\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_013622953.1
GO:0003824 - catalytic activity [Evidence IEA]
GO:0006777 - Mo-molybdopterin cofactor biosynthetic process [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
molybdopterin converting factor subunit 1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_013614334.1
COORDINATES: similar to AA sequence:RefSeq:WP_010889484.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586251.1
GO:0018817 - 2-oxo-hept-3-ene-1,7-dioate hydratase activity [Evidence IEA]
2-oxo-hepta-3-ene-1,7-dioic acid hydratase
COORDINATES: similar to AA sequence:RefSeq:WP_013623001.1
glyoxalase/bleomycin resistance/dioxygenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011525635.1
GO:0018802 - 2,4-dihydroxyhept-2-ene-1,7-dioate aldolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011530898.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623004.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623005.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623006.1
COORDINATES: protein motif:HMM:NF024491.2
phospholipase D-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013623007.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004329 - formate-tetrahydrofolate ligase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013623009.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623011.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623012.1
xanthine dehydrogenase family protein molybdopterin-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008875026.1
xanthine dehydrogenase family protein subunit M
COORDINATES: similar to AA sequence:RefSeq:WP_013623014.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013623015.1
GO:0009326 - formate dehydrogenase complex [Evidence IEA]
GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IEA]
GO:0015942 - formate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013623016.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623017.1
GO:0016783 - sulfurtransferase activity [Evidence IEA]
formate dehydrogenase accessory sulfurtransferase FdhD
COORDINATES: similar to AA sequence:RefSeq:WP_013623018.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017869773.1
COORDINATES: similar to AA sequence:RefSeq:WP_019008669.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623021.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_005645237.1
COORDINATES: similar to AA sequence:RefSeq:WP_012692188.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623024.1
COORDINATES: similar to AA sequence:RefSeq:WP_008212303.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623031.1
COORDINATES: similar to AA sequence:RefSeq:WP_010887646.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013623033.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623034.1
UDP-N-acetylmuramyl-tripeptide synthetase
COORDINATES: similar to AA sequence:RefSeq:WP_013623035.1
COORDINATES: similar to AA sequence:RefSeq:WP_017871914.1
prolyl oligopeptidase family serine peptidase
COORDINATES: protein motif:HMM:NF039927.1
COORDINATES: protein motif:HMM:NF012578.2
COORDINATES: similar to AA sequence:RefSeq:WP_013622957.1
COORDINATES: similar to AA sequence:RefSeq:WP_013622958.1
GO:0008965 - phosphoenolpyruvate-protein phosphotransferase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]; GO:0006808 - regulation of nitrogen utilization [Evidence IEA]
phosphoenolpyruvate--protein phosphotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_013177788.1
GO:0008448 - N-acetylglucosamine-6-phosphate deacetylase activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]
N-acetylglucosamine-6-phosphate deacetylase
COORDINATES: similar to AA sequence:RefSeq:WP_013622960.1
COORDINATES: similar to AA sequence:RefSeq:WP_013013877.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076612365.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014594.2
COORDINATES: similar to AA sequence:RefSeq:WP_014684240.1
COORDINATES: similar to AA sequence:RefSeq:WP_019008352.1
COORDINATES: similar to AA sequence:RefSeq:WP_013622962.1
COORDINATES: similar to AA sequence:RefSeq:WP_013622963.1
ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF017206.2
COORDINATES: protein motif:HMM:NF024627.2
right-handed parallel beta-helix repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013622966.1
COORDINATES: similar to AA sequence:RefSeq:WP_004372486.1
GO:0005575 - cellular_component [Evidence IEA]
GO:0008976 - polyphosphate kinase activity [Evidence IEA]
GO:0006793 - phosphorus metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012695021.1
COORDINATES: similar to AA sequence:RefSeq:WP_011234992.1
GO:0004834 - tryptophan synthase activity [Evidence IEA]
GO:0000162 - tryptophan biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006768771.1
COORDINATES: similar to AA sequence:RefSeq:WP_013622969.1
GO:0004425 - indole-3-glycerol-phosphate synthase activity [Evidence IEA]; GO:0004640 - phosphoribosylanthranilate isomerase activity [Evidence IEA]
GO:0006568 - tryptophan metabolic process [Evidence IEA]
bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF
COORDINATES: similar to AA sequence:RefSeq:WP_013622970.1
GO:0004048 - anthranilate phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014292981.1
GO:0016787 - hydrolase activity [Evidence IEA]
Members of this family of hydrolases with an active site Cys residue belong to MEROPS family C26; Derived by automated computational analysis using gene prediction method: Protein Homology.
gamma-glutamyl-gamma-aminobutyrate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008488460.1
GO:0004049 - anthranilate synthase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013622974.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013622975.1
phosphatidylinositol-specific phospholipase C/glycerophosphodiester phosphodiesterase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013623231.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013623230.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015412 - ABC-type molybdate transporter activity [Evidence IEA]
GO:0015689 - molybdate ion transport [Evidence IEA]
molybdate ABC transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_005796659.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0015412 - ABC-type molybdate transporter activity [Evidence IEA]; GO:0030973 - molybdate ion binding [Evidence IEA]
molybdate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013622980.1
COORDINATES: similar to AA sequence:RefSeq:WP_013622981.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013622982.1
COORDINATES: similar to AA sequence:RefSeq:WP_013456945.1
COORDINATES: protein motif:HMM:TIGR00254.1
COORDINATES: protein motif:HMM:NF013677.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013616005.1
GO:0015074 - DNA integration [Evidence IEA]
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013012311.1
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_013622983.1
GO:0004397 - histidine ammonia-lyase activity [Evidence IEA]
GO:0006548 - histidine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019585190.1
COORDINATES: similar to AA sequence:RefSeq:WP_011525841.1
GO:0050480 - imidazolonepropionase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019008825.1
GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013622986.1
COORDINATES: similar to AA sequence:RefSeq:WP_017871474.1
GO:0016153 - urocanate hydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010889412.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013622990.1
COORDINATES: similar to AA sequence:RefSeq:WP_013622991.1
COORDINATES: protein motif:HMM:NF024698.2
COORDINATES: similar to AA sequence:RefSeq:WP_013623061.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623036.1
COORDINATES: protein motif:HMM:NF012264.2
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015183052.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623038.1
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000210 - NAD+ diphosphatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013623042.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623045.1
COORDINATES: protein motif:HMM:NF018066.2
GO:0016829 - lyase activity [Evidence IEA]
acetoacetate decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013623050.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623051.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623052.1
GO:0005971 - ribonucleoside-diphosphate reductase complex [Evidence IEA]
GO:0030145 - manganese ion binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]
class 1b ribonucleoside-diphosphate reductase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_013623053.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
class 1b ribonucleoside-diphosphate reductase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_013623054.1
GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IEA]
class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI
COORDINATES: similar to AA sequence:RefSeq:WP_013623055.1
COORDINATES: similar to AA sequence:RefSeq:WP_013615904.1
COORDINATES: protein motif:HMM:NF013842.2
COORDINATES: similar to AA sequence:RefSeq:WP_013623029.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623056.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076612053.1
COORDINATES: similar to AA sequence:RefSeq:WP_019008488.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013623091.1
COORDINATES: protein motif:HMM:NF013980.2
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: similar to AA sequence:RefSeq:WP_007090658.1
GO:0004833 - tryptophan 2,3-dioxygenase activity [Evidence IEA]
GO:0019441 - tryptophan catabolic process to kynurenine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017869441.1
glutathione-dependent formaldehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_013623095.1
COORDINATES: similar to AA sequence:RefSeq:WP_014684195.1
COORDINATES: similar to AA sequence:RefSeq:WP_009457935.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623099.1
COORDINATES: similar to AA sequence:RefSeq:WP_010886893.1
GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
4'-phosphopantetheinyl transferase superfamily protein
COORDINATES: similar to AA sequence:RefSeq:WP_013623101.1
GO:0004124 - cysteine synthase activity [Evidence IEA]
GO:0006535 - cysteine biosynthetic process from serine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013623102.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623108.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF012706.2
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013623109.1
COORDINATES: similar to AA sequence:RefSeq:WP_013558385.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623114.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_012694125.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623115.1
COORDINATES: similar to AA sequence:RefSeq:WP_019008310.1
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019587498.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623116.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623117.1
COORDINATES: protein motif:HMM:NF019468.2
COORDINATES: similar to AA sequence:RefSeq:WP_013623077.1
COORDINATES: similar to AA sequence:RefSeq:WP_011531291.1
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013557072.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623081.1
GO:0008662 - 1-phosphofructokinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013623082.1
GO:0022877 - protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
fructose-specific PTS transporter subunit EIIC
COORDINATES: similar to AA sequence:RefSeq:WP_006033704.1
GO:0003879 - ATP phosphoribosyltransferase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013622946.1
GO:0004399 - histidinol dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076612364.1
COORDINATES: similar to AA sequence:RefSeq:WP_012127627.1
GO:0004401 - histidinol-phosphatase activity [Evidence IEA]; GO:0004424 - imidazoleglycerol-phosphate dehydratase activity [Evidence IEA]
bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB
COORDINATES: similar to AA sequence:RefSeq:WP_005311381.1
GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]; GO:0000107 - imidazoleglycerol-phosphate synthase activity [Evidence IEA]
imidazole glycerol phosphate synthase subunit HisH
COORDINATES: similar to AA sequence:RefSeq:WP_013622943.1
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_013622942.1
GO:0000107 - imidazoleglycerol-phosphate synthase activity [Evidence IEA]
imidazole glycerol phosphate synthase subunit HisF
COORDINATES: similar to AA sequence:RefSeq:WP_015878823.1
GO:0004635 - phosphoribosyl-AMP cyclohydrolase activity [Evidence IEA]; GO:0004636 - phosphoribosyl-ATP diphosphatase activity [Evidence IEA]
bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE
COORDINATES: similar to AA sequence:RefSeq:WP_013623131.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623132.1
alpha/beta fold hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011529662.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0019346 - transsulfuration [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00162
SAM riboswitch class I; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_013623134.1
GO:0004489 - methylenetetrahydrofolate reductase (NAD(P)H) activity [Evidence IEA]
GO:0006555 - methionine metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013623135.1
GO:0008705 - methionine synthase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0009086 - methionine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010888828.1
COORDINATES: similar to AA sequence:RefSeq:WP_017870446.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623139.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623140.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
glycoside hydrolase family 3 C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013622887.1
COORDINATES: similar to AA sequence:RefSeq:WP_011704854.1
COORDINATES: similar to AA sequence:RefSeq:WP_013622890.1
MetQ/NlpA family ABC transporter substrate-binding protein
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_011525689.1
COORDINATES: similar to AA sequence:RefSeq:WP_013622891.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612299.1
COORDINATES: protein motif:HMM:NF012870.2
COORDINATES: similar to AA sequence:RefSeq:WP_014129653.1
COORDINATES: similar to AA sequence:RefSeq:WP_017870781.1
COORDINATES: protein motif:HMM:NF017015.2
COORDINATES: protein motif:HMM:NF024676.2
COORDINATES: similar to AA sequence:RefSeq:WP_019587402.1
COORDINATES: protein motif:HMM:NF018933.2
COORDINATES: similar to AA sequence:RefSeq:WP_086558286.1
COORDINATES: similar to AA sequence:RefSeq:WP_013616020.1
COORDINATES: similar to AA sequence:RefSeq:WP_013622896.1
WGxxGxxG-CTERM domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013622897.1
COORDINATES: protein motif:HMM:NF012955.2
COORDINATES: similar to AA sequence:RefSeq:WP_013622899.1
COORDINATES: similar to AA sequence:RefSeq:WP_013622900.1
ParB/RepB/Spo0J family partition protein
COORDINATES: protein motif:HMM:NF021637.2
COORDINATES: similar to AA sequence:RefSeq:WP_019008131.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013622904.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013622905.1
COORDINATES: similar to AA sequence:RefSeq:WP_013622906.1
COORDINATES: similar to AA sequence:RefSeq:WP_013622907.1
COORDINATES: similar to AA sequence:RefSeq:WP_020676378.1
COORDINATES: similar to AA sequence:RefSeq:WP_019494932.1
COORDINATES: similar to AA sequence:RefSeq:WP_012164005.1
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: protein motif:HMM:NF024832.2
COORDINATES: protein motif:HMM:NF012744.2
COORDINATES: similar to AA sequence:RefSeq:WP_019937283.1
GO:0008761 - UDP-N-acetylglucosamine 2-epimerase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)
COORDINATES: protein motif:HMM:NF024831.2
COORDINATES: protein motif:HMM:NF013793.2
tyrosine-protein kinase domain-containing protein
COORDINATES: protein motif:HMM:NF016800.2
COORDINATES: similar to AA sequence:RefSeq:WP_013622909.1
COORDINATES: similar to AA sequence:RefSeq:WP_013622910.1
COORDINATES: protein motif:HMM:TIGR03570.1
COORDINATES: similar to AA sequence:RefSeq:WP_014989238.1
COORDINATES: protein motif:HMM:NF025053.2
protein phosphatase 2C domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003141798.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014860.2
COORDINATES: protein motif:HMM:NF012790.2
rhodanese-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013178561.1
COORDINATES: similar to AA sequence:RefSeq:WP_018467600.1
COORDINATES: similar to AA sequence:RefSeq:WP_013622914.1
metal-sensitive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018611635.1
GO:0004096 - catalase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019494934.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO:0003979 - UDP-glucose 6-dehydrogenase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_065828827.1
COORDINATES: similar to AA sequence:RefSeq:WP_018466004.1
DegT/DnrJ/EryC1/StrS aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013176622.1
nucleoside-diphosphate sugar epimerase/dehydratase
COORDINATES: similar to AA sequence:RefSeq:WP_019011737.1
GO:0004844 - uracil DNA N-glycosylase activity [Evidence IEA]
GO:0006284 - base-excision repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013622933.1
COORDINATES: similar to AA sequence:RefSeq:WP_013622934.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623130.1
GO:0008745 - N-acetylmuramoyl-L-alanine amidase activity [Evidence IEA]
GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013623129.1
GO:0004148 - dihydrolipoyl dehydrogenase activity [Evidence IEA]
GO:0045454 - cell redox homeostasis [Evidence IEA]; GO:0051068 - dihydrolipoamide metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013623128.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623127.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013623126.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623125.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623124.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623123.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623122.1
GO:0006935 - chemotaxis [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013623121.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623120.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623119.1
GO:0008168 - methyltransferase activity [Evidence IEA]
methyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019551667.1
GO:0098662 - inorganic cation transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013623118.1
COORDINATES: similar to AA sequence:RefSeq:WP_014685884.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013623075.1
COORDINATES: similar to AA sequence:RefSeq:WP_015812967.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623073.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623069.1
GO:0009975 - cyclase activity [Evidence IEA]
GO:0009966 - regulation of signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013623068.1
bifunctional metallophosphatase/5'-nucleotidase
COORDINATES: similar to AA sequence:RefSeq:WP_013623067.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014695756.1
COORDINATES: similar to AA sequence:RefSeq:WP_011525589.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623064.1
serine hydrolase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011530445.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623062.1
COORDINATES: similar to AA sequence:RefSeq:WP_013622992.1
GO:0004729 - oxygen-dependent protoporphyrinogen oxidase activity [Evidence IEA]
GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013622993.1
GO:0004325 - ferrochelatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013622994.1
GO:0004853 - uroporphyrinogen decarboxylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017871472.1
COORDINATES: similar to AA sequence:RefSeq:WP_013622996.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0043022 - ribosome binding [Evidence IEA]
ribosome small subunit-dependent GTPase A
COORDINATES: similar to AA sequence:RefSeq:WP_013622997.1
COORDINATES: similar to AA sequence:RefSeq:WP_010888812.1
COORDINATES: similar to AA sequence:RefSeq:WP_010888811.1
COORDINATES: similar to AA sequence:RefSeq:WP_013622955.1
COORDINATES: similar to AA sequence:RefSeq:WP_013622956.1
GO:0005355 - glucose transmembrane transporter activity [Evidence IEA]
glucose-specific PTS transporter subunit IIBC
COORDINATES: similar to AA sequence:RefSeq:WP_013623057.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611084.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010887066.1
COORDINATES: protein motif:HMM:NF012334.2
COORDINATES: similar to AA sequence:RefSeq:WP_019010795.1
GO:0004061 - arylformamidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014683740.1
COORDINATES: similar to AA sequence:RefSeq:WP_019009812.1
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019010796.1
GO:0030429 - kynureninase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013622952.1
lytic transglycosylase domain-containing protein