Streptomyces durmitorensis strain MS405 plasmid p1, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces.
Submitted (11-MAY-2022) Hunan Institute of Agricultural Biotechnology, Hunan Institute of Agricultural Biotechnology, FuRong district, Changsha, Hunan 410078, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP097290.1.\nBacteria and source DNA available from ZhouXiaomao.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Racon v. 4.16\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 120.0x\nSequencing Technology :: Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/26/2023 06:06:00\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 8,704\nCDSs (total) :: 8,614\nGenes (coding) :: 8,438\nCDSs (with protein) :: 8,438\nGenes (RNA) :: 90\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 69\nncRNAs :: 3\nPseudo Genes (total) :: 176\nCDSs (without protein) :: 176\nPseudo Genes (ambiguous residues) :: 0 of 176\nPseudo Genes (frameshifted) :: 47 of 176\nPseudo Genes (incomplete) :: 135 of 176\nPseudo Genes (internal stop) :: 17 of 176\nPseudo Genes (multiple problems) :: 22 of 176\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Streptomyces durmitorensis
COORDINATES: similar to AA sequence:RefSeq:WP_010988963.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010056240.1
COORDINATES: similar to AA sequence:RefSeq:WP_018554469.1
GO:0003896 - DNA primase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007268493.1
COORDINATES: protein motif:HMM:NF012296.2
COORDINATES: similar to AA sequence:RefSeq:WP_015576367.1
COORDINATES: similar to AA sequence:RefSeq:WP_008415521.1
COORDINATES: protein motif:HMM:NF012901.2
acyltransferase domain-containing protein
COORDINATES: protein motif:HMM:TIGR03897.1
type 2 lanthipeptide synthetase LanM family protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF036450.2
COORDINATES: protein motif:HMM:NF012873.2
COORDINATES: similar to AA sequence:RefSeq:WP_005321832.1
COORDINATES: similar to AA sequence:RefSeq:WP_004994442.1
AfsR/SARP family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018521819.1
GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
4'-phosphopantetheinyl transferase superfamily protein
COORDINATES: protein motif:HMM:NF012337.2
COORDINATES: protein motif:HMM:NF012759.2
COORDINATES: similar to AA sequence:RefSeq:WP_018568306.1
COORDINATES: protein motif:HMM:NF012655.2
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014155112.1
COORDINATES: protein motif:HMM:NF014906.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
amino acid adenylation domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013285638.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_012381769.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020668226.1
COORDINATES: similar to AA sequence:RefSeq:WP_005157926.1
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018554463.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012828062.1
COORDINATES: similar to AA sequence:RefSeq:WP_007358389.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012826354.1
COORDINATES: similar to AA sequence:RefSeq:WP_015114252.1
GO:0070403 - NAD+ binding [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018106314.1
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009187586.1
GO:0004478 - methionine adenosyltransferase activity [Evidence IEA]
GO:0006556 - S-adenosylmethionine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005321838.1
COORDINATES: similar to AA sequence:RefSeq:WP_018106304.1
COORDINATES: similar to AA sequence:RefSeq:WP_010638157.1
COORDINATES: similar to AA sequence:RefSeq:WP_018548736.1
COORDINATES: similar to AA sequence:RefSeq:WP_003991562.1
ScbR family autoregulator-binding transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_018548734.1
GO:0003997 - acyl-CoA oxidase activity [Evidence IEA]
GO:0006635 - fatty acid beta-oxidation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018560798.1
GO:0008703 - 5-amino-6-(5-phosphoribosylamino)uracil reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014668731.1
COORDINATES: similar to AA sequence:RefSeq:WP_020124410.1
COORDINATES: similar to AA sequence:RefSeq:WP_008742102.1
COORDINATES: similar to AA sequence:RefSeq:WP_016828477.1
COORDINATES: similar to AA sequence:RefSeq:WP_004994192.1
COORDINATES: similar to AA sequence:RefSeq:WP_005477537.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677524.1
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009711103.1
COORDINATES: protein motif:HMM:NF020130.2
ketoacyl-ACP synthase III family protein
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005148288.1
nuclear transport factor 2 family protein
COORDINATES: protein motif:HMM:NF013491.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
GO:0016310 - phosphorylation [Evidence IEA]
PEP/pyruvate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020422020.1
COORDINATES: protein motif:HMM:NF016107.2
GO:0004671 - protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity [Evidence IEA]
GO:0006481 - C-terminal protein methylation [Evidence IEA]
protein-S-isoprenylcysteine O-methyltransferase
COORDINATES: protein motif:HMM:NF015700.2
AfsA-related hotdog domain-containing protein
COORDINATES: protein motif:HMM:NF024793.2
COORDINATES: similar to AA sequence:RefSeq:WP_006139027.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212273.1