Paracoccus denitrificans PD1222 plasmid 1, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Paracoccus.
Complete sequence of Plasmid 1 of Paracoccus denitrificans PD1222
Submitted (04-DEC-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP000491.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 3634481\nSource DNA and bacteria available from Stephen Spiro\n(stephen.spiro@utdallas.edu)\nContacts: Stephen Spiro (stephen.spiro@utdallas.edu)\n Paul Richardson (microbes@cuba.jgi-psf.org)\nQuality assurance done by JGI-Stanford\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-LANL\nFinished microbial genomes have been curated to close all gaps with\ngreater than 98% coverage of at least two independent clones. Each\nbase pair has a minimum q (quality) value of 30 and the total error\nrate is less than one per 50000.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/29/2022 01:47:40\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,225\nCDSs (total) :: 5,160\nGenes (coding) :: 5,053\nCDSs (with protein) :: 5,053\nGenes (RNA) :: 65\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 53\nncRNAs :: 3\nPseudo Genes (total) :: 107\nCDSs (without protein) :: 107\nPseudo Genes (ambiguous residues) :: 0 of 107\nPseudo Genes (frameshifted) :: 33 of 107\nPseudo Genes (incomplete) :: 90 of 107\nPseudo Genes (internal stop) :: 7 of 107\nPseudo Genes (multiple problems) :: 21 of 107\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_011750740.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017148866.1
COORDINATES: similar to AA sequence:RefSeq:WP_008837301.1
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003582151.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_009178563.1
COORDINATES: similar to AA sequence:RefSeq:WP_013895010.1
COORDINATES: similar to AA sequence:RefSeq:WP_017998753.1
COORDINATES: similar to AA sequence:RefSeq:WP_017968775.1
COORDINATES: similar to AA sequence:RefSeq:WP_008874711.1
helix-turn-helix domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_017736064.1
helix-turn-helix domain-containing GNAT family N-acetyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_017522796.1
COORDINATES: similar to AA sequence:RefSeq:WP_013500716.1
COORDINATES: similar to AA sequence:RefSeq:WP_014193060.1
COORDINATES: similar to AA sequence:RefSeq:WP_014644584.1
COORDINATES: similar to AA sequence:RefSeq:WP_012213419.1
COORDINATES: similar to AA sequence:RefSeq:WP_018701339.1
3-keto-5-aminohexanoate cleavage protein
COORDINATES: protein motif:HMM:TIGR02937.1
COORDINATES: protein motif:HMM:NF016648.2
COORDINATES: protein motif:HMM:NF019283.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007815849.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0015343 - siderophore-iron transmembrane transporter activity [Evidence IEA]
GO:0015891 - siderophore transport [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008554852.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family transposase zinc-finger binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009488605.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase
COORDINATES: similar to AA sequence:RefSeq:WP_007204951.1
GO:0004803 - transposase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008029406.1
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007604986.1
COORDINATES: similar to AA sequence:RefSeq:WP_011908629.1
COORDINATES: similar to AA sequence:RefSeq:WP_012643860.1
COORDINATES: similar to AA sequence:RefSeq:WP_005856713.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_002719482.1
COORDINATES: similar to AA sequence:RefSeq:WP_012643859.1
COORDINATES: similar to AA sequence:RefSeq:WP_002719480.1
COORDINATES: similar to AA sequence:RefSeq:WP_010400160.1
GO:0003987 - acetate-CoA ligase activity [Evidence IEA]
GO:0019427 - acetyl-CoA biosynthetic process from acetate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010400161.1
COORDINATES: similar to AA sequence:RefSeq:WP_002720743.1
COORDINATES: similar to AA sequence:RefSeq:WP_010400163.1
GO:0008773 - [protein-PII] uridylyltransferase activity [Evidence IEA]
DUF294 nucleotidyltransferase-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011750778.1
COORDINATES: similar to AA sequence:RefSeq:WP_010400165.1
COORDINATES: similar to AA sequence:RefSeq:WP_010400167.1
COORDINATES: protein motif:HMM:NF012311.2
COORDINATES: similar to AA sequence:RefSeq:WP_008596060.1
COORDINATES: protein motif:HMM:NF013132.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015157188.1
COORDINATES: protein motif:HMM:NF012573.2
COORDINATES: similar to AA sequence:RefSeq:WP_008125341.1
COORDINATES: similar to AA sequence:RefSeq:WP_007880910.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0003955 - NAD(P)H dehydrogenase (quinone) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006219872.1
COORDINATES: similar to AA sequence:RefSeq:WP_013544287.1
COORDINATES: protein motif:HMM:NF013077.2
COORDINATES: similar to AA sequence:RefSeq:WP_020009890.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0003994 - aconitate hydratase activity [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
COORDINATES: similar to AA sequence:RefSeq:WP_009340074.1
COORDINATES: similar to AA sequence:RefSeq:WP_006612185.1
COORDINATES: similar to AA sequence:RefSeq:WP_009043188.1
COORDINATES: similar to AA sequence:RefSeq:WP_008890999.1
COORDINATES: similar to AA sequence:RefSeq:WP_019307376.1
COORDINATES: similar to AA sequence:RefSeq:WP_017140098.1
COORDINATES: similar to AA sequence:RefSeq:WP_011910710.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018245588.1
COORDINATES: similar to AA sequence:RefSeq:WP_010141686.1
COORDINATES: protein motif:HMM:NF013777.2
COORDINATES: protein motif:HMM:NF015925.2
COORDINATES: similar to AA sequence:RefSeq:WP_006202495.1
COORDINATES: similar to AA sequence:RefSeq:WP_002632226.1
COORDINATES: protein motif:HMM:NF022072.2
COORDINATES: similar to AA sequence:RefSeq:WP_014529335.1
COORDINATES: similar to AA sequence:RefSeq:WP_009490776.1
COORDINATES: similar to AA sequence:RefSeq:WP_008839144.1
COORDINATES: similar to AA sequence:RefSeq:WP_011749890.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011909151.1
COORDINATES: similar to AA sequence:RefSeq:WP_012706171.1
COORDINATES: similar to AA sequence:RefSeq:WP_011749414.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008834640.1
COORDINATES: similar to AA sequence:RefSeq:WP_009565800.1
rhodanese-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011339294.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
This protein belongs to a clade of uncharacterized proteins related to peroxidases such as the alkylhydroperoxidase AhpD; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009565804.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012643339.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009565807.1
GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009565808.1
COORDINATES: similar to AA sequence:RefSeq:WP_009565809.1
COORDINATES: similar to AA sequence:RefSeq:WP_009565810.1
COORDINATES: similar to AA sequence:RefSeq:WP_007594624.1
COORDINATES: similar to AA sequence:RefSeq:WP_011439975.1
COORDINATES: similar to AA sequence:RefSeq:WP_007594626.1
COORDINATES: similar to AA sequence:RefSeq:WP_009565814.1
COORDINATES: similar to AA sequence:RefSeq:WP_011160180.1
COORDINATES: similar to AA sequence:RefSeq:WP_009565817.1
COORDINATES: similar to AA sequence:RefSeq:WP_010400709.1
COORDINATES: similar to AA sequence:RefSeq:WP_014538189.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
putative DNA modification/repair radical SAM protein
COORDINATES: similar to AA sequence:RefSeq:WP_006469961.1
This protein belongs to the uracil DNA glycosylase superfamily, members of which act in excision repair of DNA. However, it belongs more specifically to UdgX branch, whose founding member was found to bind uracil in DNA (where it does not belong), without cleaving it, appears to promote DNA repair by a pathway involving RecA, rather than base excision; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005854017.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013385641.1
phospholipase D-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013368450.1
COORDINATES: similar to AA sequence:RefSeq:WP_013368459.1
GO:0004096 - catalase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013625.2
COORDINATES: similar to AA sequence:RefSeq:WP_008229578.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019400770.1
GO:0004157 - dihydropyrimidinase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007803069.1
COORDINATES: similar to AA sequence:RefSeq:WP_013168389.1
GO:0036361 - racemase activity, acting on amino acids and derivatives [Evidence IEA]
GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
aspartate/glutamate racemase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019400778.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803066.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803065.1
COORDINATES: protein motif:HMM:NF014081.2
COORDINATES: protein motif:HMM:NF013413.2
GO:0070573 - metallodipeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008885637.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009177904.1
Glu/Leu/Phe/Val dehydrogenase dimerization domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014327226.1
COORDINATES: protein motif:HMM:NF013434.2
COORDINATES: protein motif:HMM:NF013123.2
DPP IV N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF012655.2
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: protein motif:HMM:NF012371.2
serine hydrolase domain-containing protein
COORDINATES: protein motif:HMM:NF019011.2
COORDINATES: protein motif:HMM:NF013079.2
COORDINATES: similar to AA sequence:RefSeq:WP_015182275.1
COORDINATES: protein motif:HMM:NF016830.2
GO:0015288 - porin activity [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014331449.1
COORDINATES: protein motif:HMM:NF012804.2
class II aldolase/adducin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009473091.1
GO:0003824 - catalytic activity [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
hydantoinase B/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010173430.1
COORDINATES: similar to AA sequence:RefSeq:WP_013972598.1
COORDINATES: similar to AA sequence:RefSeq:WP_007088766.1
COORDINATES: similar to AA sequence:RefSeq:WP_007088765.1
COORDINATES: similar to AA sequence:RefSeq:WP_010394354.1
COORDINATES: similar to AA sequence:RefSeq:WP_010394356.1
COORDINATES: similar to AA sequence:RefSeq:WP_010394357.1
COORDINATES: similar to AA sequence:RefSeq:WP_010394359.1
COORDINATES: protein motif:HMM:NF024808.2
ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: similar to AA sequence:RefSeq:WP_013169870.1
COORDINATES: protein motif:HMM:NF012673.2
COORDINATES: protein motif:HMM:NF013539.2
COORDINATES: similar to AA sequence:RefSeq:WP_011750874.1
GO:0003993 - acid phosphatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010394365.1
substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: similar to AA sequence:RefSeq:WP_010394369.1
sigma-54 dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010394371.1
COORDINATES: similar to AA sequence:RefSeq:WP_010394373.1
COORDINATES: similar to AA sequence:RefSeq:WP_010394375.1
COORDINATES: similar to AA sequence:RefSeq:WP_010394378.1
COORDINATES: similar to AA sequence:RefSeq:WP_006344696.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0004733 - pyridoxamine-phosphate oxidase activity [Evidence IEA]
GO:0008615 - pyridoxine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003571876.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020203743.1
COORDINATES: similar to AA sequence:RefSeq:YP_002518254.1
COORDINATES: similar to AA sequence:RefSeq:WP_009763799.1
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018182916.1
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012113624.1
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012113626.1
COORDINATES: similar to AA sequence:RefSeq:WP_018182913.1
COORDINATES: similar to AA sequence:RefSeq:WP_002968518.1
COORDINATES: similar to AA sequence:RefSeq:WP_012113629.1
COORDINATES: similar to AA sequence:RefSeq:WP_011454916.1
COORDINATES: protein motif:HMM:NF018941.2
COORDINATES: similar to AA sequence:RefSeq:WP_003452025.1
COORDINATES: similar to AA sequence:RefSeq:WP_011750897.1
GO:0016706 - 2-oxoglutarate-dependent dioxygenase activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0031418 - L-ascorbic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012801.2
COORDINATES: nucleotide motif:Rfam:14.4:RF00050
FMN riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_010396943.1
GO:0009349 - riboflavin synthase complex [Evidence IEA]
GO:0000906 - 6,7-dimethyl-8-ribityllumazine synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009456299.1
COORDINATES: similar to AA sequence:RefSeq:WP_012453142.1
COORDINATES: similar to AA sequence:RefSeq:WP_004115913.1
COORDINATES: similar to AA sequence:RefSeq:WP_010393917.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LuxR C-terminal-related transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018000689.1
COORDINATES: similar to AA sequence:RefSeq:WP_017999239.1
COORDINATES: similar to AA sequence:RefSeq:WP_011666041.1
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011475063.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
ribosome-associated ATPase/putative transporter RbbA
COORDINATES: similar to AA sequence:RefSeq:WP_011439071.1
COORDINATES: similar to AA sequence:RefSeq:WP_004435416.1
COORDINATES: similar to AA sequence:RefSeq:WP_019844900.1
COORDINATES: similar to AA sequence:RefSeq:WP_008335792.1
COORDINATES: similar to AA sequence:RefSeq:WP_010393939.1
GO:0003882 - CDP-diacylglycerol-serine O-phosphatidyltransferase activity [Evidence IEA]
GO:0008654 - phospholipid biosynthetic process [Evidence IEA]
CDP-diacylglycerol--serine O-phosphatidyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_008335794.1
COORDINATES: similar to AA sequence:RefSeq:WP_010660819.1
GO:0015205 - nucleobase transmembrane transporter activity [Evidence IEA]
GO:0015851 - nucleobase transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011439827.1
COORDINATES: similar to AA sequence:RefSeq:WP_009572912.1
COORDINATES: similar to AA sequence:RefSeq:WP_008031659.1
COORDINATES: similar to AA sequence:RefSeq:WP_003550261.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_003550260.1
COORDINATES: similar to AA sequence:RefSeq:WP_011909357.1
GO:0009055 - electron transfer activity [Evidence IEA]
cytochrome b/b6 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008028440.1
COORDINATES: similar to AA sequence:RefSeq:WP_007596754.1
COORDINATES: similar to AA sequence:RefSeq:WP_015916541.1
COORDINATES: similar to AA sequence:RefSeq:WP_010398564.1
COORDINATES: similar to AA sequence:RefSeq:WP_017999714.1
YeeE/YedE thiosulfate transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017999715.1
COORDINATES: similar to AA sequence:RefSeq:WP_017999716.1
COORDINATES: similar to AA sequence:RefSeq:WP_010397082.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010397079.1
COORDINATES: similar to AA sequence:RefSeq:WP_010397076.1
COORDINATES: similar to AA sequence:RefSeq:WP_010397074.1
COORDINATES: similar to AA sequence:RefSeq:WP_011750931.1
GO:0032955 - regulation of division septum assembly [Evidence IEA]
cell division topological specificity factor MinE
COORDINATES: similar to AA sequence:RefSeq:WP_018001493.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0000918 - division septum site selection [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010397066.1
GO:0004857 - enzyme inhibitor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011906697.1
COORDINATES: similar to AA sequence:RefSeq:WP_010397487.1
COORDINATES: similar to AA sequence:RefSeq:WP_010397484.1
COORDINATES: similar to AA sequence:RefSeq:WP_011750937.1
COORDINATES: similar to AA sequence:RefSeq:WP_003526730.1
GO:0009325 - nitrate reductase complex [Evidence IEA]
GO:0008940 - nitrate reductase activity [Evidence IEA]
GO:0042126 - nitrate metabolic process [Evidence IEA]
periplasmic nitrate reductase, NapE protein
COORDINATES: similar to AA sequence:RefSeq:WP_018185444.1
COORDINATES: similar to AA sequence:RefSeq:WP_013165983.1
periplasmic nitrate reductase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_011750942.1
nitrate reductase cytochrome c-type subunit
COORDINATES: similar to AA sequence:RefSeq:WP_019195944.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396684.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0070063 - RNA polymerase binding [Evidence IEA]
GO:0032784 - regulation of DNA-templated transcription elongation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012092330.1
COORDINATES: similar to AA sequence:RefSeq:WP_002931077.1
mechanosensitive ion channel family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017999179.1
COORDINATES: similar to AA sequence:RefSeq:WP_011750948.1
Mau operon transcriptional activator MauR
COORDINATES: similar to AA sequence:RefSeq:WP_011750949.1
COORDINATES: similar to AA sequence:RefSeq:WP_011750950.1
GO:0052876 - methylamine dehydrogenase (amicyanin) activity [Evidence IEA]
methylamine dehydrogenase (amicyanin) large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011750951.1
MauE/DoxX family redox-associated membrane protein
COORDINATES: similar to AA sequence:RefSeq:WP_011750952.1
methylamine dehydrogenase accessory protein MauD
COORDINATES: similar to AA sequence:RefSeq:WP_010396581.1
methylamine dehydrogenase (amicyanin) small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011750954.1
COORDINATES: similar to AA sequence:RefSeq:WP_011750955.1
COORDINATES: similar to AA sequence:RefSeq:WP_011750956.1
COORDINATES: similar to AA sequence:RefSeq:WP_011750957.1
COORDINATES: similar to AA sequence:RefSeq:WP_011750958.1
quinol dehydrogenase ferredoxin subunit NapH
COORDINATES: similar to AA sequence:RefSeq:WP_009561276.1
zinc ribbon domain-containing protein YjdM
COORDINATES: similar to AA sequence:RefSeq:WP_010396661.1
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_010396658.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396652.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396650.1
COORDINATES: similar to AA sequence:RefSeq:WP_011649295.1
COORDINATES: similar to AA sequence:RefSeq:WP_010394571.1
COORDINATES: similar to AA sequence:RefSeq:WP_007819536.1
glycine betaine/L-proline ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010394576.1
glycine betaine ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010394578.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010394580.1
COORDINATES: similar to AA sequence:RefSeq:WP_010394582.1
COORDINATES: similar to AA sequence:RefSeq:WP_010394584.1
COORDINATES: similar to AA sequence:RefSeq:WP_009826691.1
esterase-like activity of phytase family protein
COORDINATES: protein motif:HMM:NF028476.2
COORDINATES: similar to AA sequence:RefSeq:WP_010396646.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396643.1
3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_011750978.1
alpha-ketoacid dehydrogenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_004681859.1
dihydrolipoamide acetyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018001634.1
GO:0004148 - dihydrolipoyl dehydrogenase activity [Evidence IEA]
GO:0045454 - cell redox homeostasis [Evidence IEA]; GO:0051068 - dihydrolipoamide metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010397084.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396589.1
GSU2403 family nucleotidyltransferase fold protein
COORDINATES: similar to AA sequence:RefSeq:WP_018061921.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396592.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396593.1
dicarboxylate/amino acid:cation symporter
COORDINATES: similar to AA sequence:RefSeq:WP_011338815.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011750987.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001447.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396598.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010396600.1
COORDINATES: similar to AA sequence:RefSeq:WP_011841962.1
COORDINATES: similar to AA sequence:RefSeq:WP_017139931.1
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_011338351.1
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010396606.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
GO:0019700 - organic phosphonate catabolic process [Evidence IEA]
alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase
COORDINATES: similar to AA sequence:RefSeq:WP_010396608.1
COORDINATES: similar to AA sequence:RefSeq:WP_009572254.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0019634 - organic phosphonate metabolic process [Evidence IEA]
phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
COORDINATES: similar to AA sequence:RefSeq:WP_010396612.1
GO:0018835 - carbon phosphorus lyase activity [Evidence IEA]
phosphonate C-P lyase system protein PhnL
COORDINATES: similar to AA sequence:RefSeq:WP_011750998.1
phosphonate C-P lyase system protein PhnK
COORDINATES: similar to AA sequence:RefSeq:WP_010396616.1
alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase PhnJ
COORDINATES: similar to AA sequence:RefSeq:WP_011751000.1
carbon-phosphorus lyase complex subunit PhnI
COORDINATES: similar to AA sequence:RefSeq:WP_010396619.1
phosphonate C-P lyase system protein PhnH
COORDINATES: similar to AA sequence:RefSeq:WP_010396621.1
GO:0019634 - organic phosphonate metabolic process [Evidence IEA]; GO:0015716 - organic phosphonate transport [Evidence IEA]
phosphonate C-P lyase system protein PhnG
COORDINATES: similar to AA sequence:RefSeq:WP_008562822.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0015716 - organic phosphonate transport [Evidence IEA]
phosphonate metabolism transcriptional regulator PhnF
COORDINATES: similar to AA sequence:RefSeq:WP_010396626.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015416 - ABC-type phosphonate transporter activity [Evidence IEA]
phosphonate ABC transporter, permease protein PhnE
COORDINATES: similar to AA sequence:RefSeq:WP_010396629.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396630.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
phosphonate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010396633.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0015416 - ABC-type phosphonate transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
phosphonate ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007799134.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001561.1
COORDINATES: similar to AA sequence:RefSeq:WP_008875722.1
GO:0030272 - 5-formyltetrahydrofolate cyclo-ligase activity [Evidence IEA]
GO:0006730 - one-carbon metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010397021.1
GO:0003849 - 3-deoxy-7-phosphoheptulonate synthase activity [Evidence IEA]
GO:0009423 - chorismate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010393953.1
GO:0070403 - NAD+ binding [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003810743.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751014.1
COORDINATES: similar to AA sequence:RefSeq:WP_010393959.1
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_010930731.1
COORDINATES: similar to AA sequence:RefSeq:WP_010393962.1
COORDINATES: similar to AA sequence:RefSeq:WP_016557509.1
GO:0010124 - phenylacetate catabolic process [Evidence IEA]
phenylacetic acid degradation protein PaaN
COORDINATES: similar to AA sequence:RefSeq:WP_010393967.1
GO:0004300 - enoyl-CoA hydratase activity [Evidence IEA]
2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase PaaG
COORDINATES: similar to AA sequence:RefSeq:WP_011509490.1
hydroxyphenylacetyl-CoA thioesterase PaaI
COORDINATES: similar to AA sequence:RefSeq:WP_010393972.1
GO:0047475 - phenylacetate-CoA ligase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007799957.1
COORDINATES: similar to AA sequence:RefSeq:WP_011970679.1
COORDINATES: similar to AA sequence:RefSeq:WP_010393981.1
phenylacetic acid degradation bifunctional protein PaaZ
COORDINATES: similar to AA sequence:RefSeq:WP_010393983.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751026.1
1,2-phenylacetyl-CoA epoxidase subunit PaaE
COORDINATES: similar to AA sequence:RefSeq:WP_010393988.1
1,2-phenylacetyl-CoA epoxidase subunit PaaD
COORDINATES: similar to AA sequence:RefSeq:WP_010393992.1
1,2-phenylacetyl-CoA epoxidase subunit PaaC
COORDINATES: similar to AA sequence:RefSeq:WP_016557520.1
1,2-phenylacetyl-CoA epoxidase subunit PaaB
COORDINATES: similar to AA sequence:RefSeq:WP_010393996.1
GO:0097266 - phenylacetyl-CoA 1,2-epoxidase activity [Evidence IEA]
1,2-phenylacetyl-CoA epoxidase subunit PaaA
COORDINATES: similar to AA sequence:RefSeq:WP_007536407.1
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
GO:0019619 - 3,4-dihydroxybenzoate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010394000.1
PaaX family transcriptional regulator C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF013927.2
COORDINATES: similar to AA sequence:RefSeq:WP_013165411.1
COORDINATES: similar to AA sequence:RefSeq:WP_011648330.1
COORDINATES: similar to AA sequence:RefSeq:WP_010394603.1
COORDINATES: similar to AA sequence:RefSeq:WP_015666979.1
COORDINATES: similar to AA sequence:RefSeq:WP_010394607.1
COORDINATES: similar to AA sequence:RefSeq:WP_018208417.1
COORDINATES: similar to AA sequence:RefSeq:WP_009208170.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001616.1
COORDINATES: similar to AA sequence:RefSeq:WP_010394615.1
COORDINATES: similar to AA sequence:RefSeq:WP_012520383.1
COORDINATES: similar to AA sequence:RefSeq:WP_017502301.1
COORDINATES: similar to AA sequence:RefSeq:WP_009502587.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0051301 - cell division [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_012973107.1
COORDINATES: similar to AA sequence:RefSeq:WP_018429091.1
COORDINATES: similar to AA sequence:RefSeq:WP_019964933.1
COORDINATES: similar to AA sequence:RefSeq:WP_012177240.1
COORDINATES: similar to AA sequence:RefSeq:WP_005662626.1
GO:0016861 - intramolecular oxidoreductase activity, interconverting aldoses and ketoses [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019448756.1
FMN-binding negative transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003581607.1
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002717246.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015602119.1
COORDINATES: similar to AA sequence:RefSeq:WP_007436363.1
COORDINATES: similar to AA sequence:RefSeq:WP_008830669.1
COORDINATES: similar to AA sequence:RefSeq:WP_014257275.1
COORDINATES: protein motif:HMM:NF024811.2
COORDINATES: similar to AA sequence:RefSeq:WP_020057387.1
zinc-dependent alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009563937.1
COORDINATES: similar to AA sequence:RefSeq:WP_003566720.1
COORDINATES: similar to AA sequence:RefSeq:WP_014329271.1
COORDINATES: similar to AA sequence:RefSeq:WP_011337987.1
COORDINATES: similar to AA sequence:RefSeq:WP_019402175.1
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006470810.1
COORDINATES: similar to AA sequence:RefSeq:WP_018898011.1
D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_010394451.1
COORDINATES: similar to AA sequence:RefSeq:WP_010394450.1
COORDINATES: similar to AA sequence:RefSeq:WP_010394449.1
COORDINATES: similar to AA sequence:RefSeq:WP_010975799.1
COORDINATES: protein motif:HMM:NF012862.2
COORDINATES: similar to AA sequence:RefSeq:WP_015008629.1
COORDINATES: similar to AA sequence:RefSeq:WP_013164995.1
COORDINATES: similar to AA sequence:RefSeq:WP_008130911.1
COORDINATES: similar to AA sequence:RefSeq:WP_018323132.1
COORDINATES: similar to AA sequence:RefSeq:WP_018633870.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751078.1
COORDINATES: similar to AA sequence:RefSeq:WP_010397114.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751080.1
COORDINATES: similar to AA sequence:RefSeq:WP_003528591.1
The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007528825.1
COORDINATES: similar to AA sequence:RefSeq:WP_019994678.1
COORDINATES: similar to AA sequence:RefSeq:WP_011749527.1
COORDINATES: similar to AA sequence:RefSeq:WP_014527558.1
COORDINATES: similar to AA sequence:RefSeq:WP_002966346.1
COORDINATES: similar to AA sequence:RefSeq:WP_010400791.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247088.1
COORDINATES: similar to AA sequence:RefSeq:WP_019400916.1
COORDINATES: similar to AA sequence:RefSeq:WP_008279506.1
GO:0004735 - pyrroline-5-carboxylate reductase activity [Evidence IEA]
GO:0006561 - proline biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008137753.1
COORDINATES: similar to AA sequence:RefSeq:WP_006156576.1
COORDINATES: similar to AA sequence:RefSeq:WP_019938831.1
COORDINATES: similar to AA sequence:RefSeq:WP_006156575.1
COORDINATES: similar to AA sequence:RefSeq:WP_017235370.1
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019938835.1
COORDINATES: similar to AA sequence:RefSeq:WP_018000967.1
COORDINATES: similar to AA sequence:RefSeq:WP_018000966.1
COORDINATES: similar to AA sequence:RefSeq:WP_018000965.1
COORDINATES: similar to AA sequence:RefSeq:WP_018000964.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751101.1
COORDINATES: similar to AA sequence:RefSeq:WP_018000962.1
COORDINATES: similar to AA sequence:RefSeq:WP_018717022.1
COORDINATES: similar to AA sequence:RefSeq:WP_009539735.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0015837 - amine transport [Evidence IEA]
Members of the family are the ATP-binding subunit of ABC transporters for substrates such as betaine, L-proline or other amino acids, choline, carnitine, etc. The substrate specificity is best determined from the substrate-binding subunit, rather than this subunit, as it interacts with the permease subunit and not with substrate directly; Derived by automated computational analysis using gene prediction method: Protein Homology.
betaine/proline/choline family ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007351329.1
COORDINATES: similar to AA sequence:RefSeq:WP_018405006.1
COORDINATES: similar to AA sequence:RefSeq:WP_009539738.1
nitrilase-related carbon-nitrogen hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_016348587.1
COORDINATES: similar to AA sequence:RefSeq:WP_011810002.1
COORDINATES: similar to AA sequence:RefSeq:WP_016348590.1
COORDINATES: similar to AA sequence:RefSeq:WP_018387567.1
COORDINATES: similar to AA sequence:RefSeq:WP_016491719.1
COORDINATES: protein motif:HMM:NF019604.2
COORDINATES: protein motif:HMM:NF012402.2
hybrid-cluster NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF013044.2
aromatic ring-hydroxylating dioxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_018430720.1
COORDINATES: similar to AA sequence:RefSeq:WP_020722962.1
COORDINATES: similar to AA sequence:RefSeq:WP_009764448.1
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
putative FMN-dependent luciferase-like monooxygenase
COORDINATES: similar to AA sequence:RefSeq:WP_007690485.1
COORDINATES: similar to AA sequence:RefSeq:WP_016941597.1
COORDINATES: similar to AA sequence:RefSeq:WP_011748893.1
GO:0008864 - formyltetrahydrofolate deformylase activity [Evidence IEA]
GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011751123.1
GO:0004488 - methylenetetrahydrofolate dehydrogenase (NADP+) activity [Evidence IEA]
bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD
COORDINATES: similar to AA sequence:RefSeq:WP_003518234.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001666.1
GO:0008115 - sarcosine oxidase activity [Evidence IEA]
sarcosine oxidase subunit alpha family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018001665.1
COORDINATES: similar to AA sequence:RefSeq:WP_008559410.1
GO:0046653 - tetrahydrofolate metabolic process [Evidence IEA]
sarcosine oxidase subunit beta family protein
COORDINATES: protein motif:HMM:NF014068.2
COORDINATES: protein motif:HMM:NF024921.2
COORDINATES: similar to AA sequence:RefSeq:WP_004420499.1
COORDINATES: similar to AA sequence:RefSeq:WP_006218153.1
COORDINATES: similar to AA sequence:RefSeq:WP_019652051.1
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003534212.1
COORDINATES: similar to AA sequence:RefSeq:WP_013068589.1
COORDINATES: similar to AA sequence:RefSeq:WP_003596089.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011751137.1
GO:0036211 - protein modification process [Evidence IEA]
COORDINATES: protein motif:HMM:NF020893.2
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: similar to AA sequence:RefSeq:WP_006487540.1
COORDINATES: similar to AA sequence:RefSeq:WP_007878015.1
COORDINATES: similar to AA sequence:RefSeq:WP_017998859.1
COORDINATES: similar to AA sequence:RefSeq:WP_012649972.1
COORDINATES: similar to AA sequence:RefSeq:WP_017998861.1
COORDINATES: similar to AA sequence:RefSeq:WP_013587287.1
COORDINATES: similar to AA sequence:RefSeq:WP_017963010.1
COORDINATES: similar to AA sequence:RefSeq:WP_020048665.1
2-dehydro-3-deoxy-6-phosphogalactonate aldolase
COORDINATES: similar to AA sequence:RefSeq:WP_015342664.1
zinc-binding alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007753849.1
COORDINATES: protein motif:HMM:TIGR02444.1
COORDINATES: similar to AA sequence:RefSeq:WP_014989788.1
COORDINATES: similar to AA sequence:RefSeq:WP_015445520.1
COORDINATES: similar to AA sequence:RefSeq:WP_014528249.1
COORDINATES: similar to AA sequence:RefSeq:WP_010968146.1
COORDINATES: similar to AA sequence:RefSeq:WP_009756237.1
COORDINATES: similar to AA sequence:RefSeq:WP_009756236.1
COORDINATES: similar to AA sequence:RefSeq:WP_009756235.1
COORDINATES: similar to AA sequence:RefSeq:WP_014528254.1
COORDINATES: similar to AA sequence:RefSeq:WP_009756233.1
COORDINATES: similar to AA sequence:RefSeq:WP_017269786.1
COORDINATES: similar to AA sequence:RefSeq:WP_009756231.1
COORDINATES: similar to AA sequence:RefSeq:WP_014989793.1
COORDINATES: similar to AA sequence:RefSeq:WP_014528259.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751165.1
COORDINATES: similar to AA sequence:RefSeq:WP_014192531.1
COORDINATES: similar to AA sequence:RefSeq:WP_013894048.1
COORDINATES: similar to AA sequence:RefSeq:WP_013894047.1
COORDINATES: similar to AA sequence:RefSeq:WP_007754108.1
COORDINATES: similar to AA sequence:RefSeq:WP_019965583.1
COORDINATES: similar to AA sequence:RefSeq:WP_007697887.1
COORDINATES: similar to AA sequence:RefSeq:WP_011970441.1
COORDINATES: similar to AA sequence:RefSeq:WP_019965581.1
COORDINATES: similar to AA sequence:RefSeq:WP_007697834.1
COORDINATES: similar to AA sequence:RefSeq:WP_012650472.1
COORDINATES: similar to AA sequence:RefSeq:WP_019965578.1
COORDINATES: similar to AA sequence:RefSeq:WP_012650470.1
COORDINATES: similar to AA sequence:RefSeq:WP_007608624.1
COORDINATES: similar to AA sequence:RefSeq:WP_010967971.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572363.1
aspartate aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015929537.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014332288.1
COORDINATES: similar to AA sequence:RefSeq:WP_011649380.1
COORDINATES: similar to AA sequence:RefSeq:WP_010504964.1
GO:0018784 - (S)-2-haloacid dehalogenase activity [Evidence IEA]
GO:0006805 - xenobiotic metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014332295.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_003500453.1
GO:0009027 - tartrate dehydrogenase activity [Evidence IEA]
GO:0046395 - carboxylic acid catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011649388.1
COORDINATES: similar to AA sequence:RefSeq:WP_014763732.1
COORDINATES: similar to AA sequence:RefSeq:WP_014332291.1
COORDINATES: similar to AA sequence:RefSeq:WP_015934131.1
hydantoinase/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014332289.1
COORDINATES: similar to AA sequence:RefSeq:WP_006206801.1
GO:0008777 - acetylornithine deacetylase activity [Evidence IEA]
GO:0006592 - ornithine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010395487.1
sigma-54-dependent Fis family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006727844.1
COORDINATES: similar to AA sequence:RefSeq:WP_010395485.1
COORDINATES: similar to AA sequence:RefSeq:WP_010395484.1
COORDINATES: similar to AA sequence:RefSeq:WP_010395483.1
acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunit
COORDINATES: similar to AA sequence:RefSeq:WP_010395482.1
COORDINATES: similar to AA sequence:RefSeq:WP_011049470.1
thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_011751204.1
GO:0003951 - NAD+ kinase activity [Evidence IEA]
GO:0006741 - NADP biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF016439.2
COORDINATES: similar to AA sequence:RefSeq:WP_013166080.1
COORDINATES: similar to AA sequence:RefSeq:WP_010400407.1
COORDINATES: similar to AA sequence:RefSeq:WP_009561259.1
COORDINATES: similar to AA sequence:RefSeq:WP_009562737.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010397869.1
COORDINATES: similar to AA sequence:RefSeq:WP_020096117.1
enoyl-CoA hydratase/isomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012115325.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751212.1
COORDINATES: similar to AA sequence:RefSeq:WP_010397861.1
COORDINATES: similar to AA sequence:RefSeq:WP_010397858.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751215.1
COORDINATES: similar to AA sequence:RefSeq:WP_010397854.1
COORDINATES: similar to AA sequence:RefSeq:WP_010397852.1
COORDINATES: similar to AA sequence:RefSeq:WP_010397850.1
COORDINATES: similar to AA sequence:RefSeq:WP_008328671.1
COORDINATES: protein motif:HMM:NF012790.2
COORDINATES: similar to AA sequence:RefSeq:WP_008494950.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751222.1
COORDINATES: similar to AA sequence:RefSeq:WP_015506715.1
COORDINATES: similar to AA sequence:RefSeq:WP_009490134.1
COORDINATES: similar to AA sequence:RefSeq:WP_009490132.1
LLM class flavin-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF017262.2
COORDINATES: protein motif:HMM:NF019599.2
COORDINATES: similar to AA sequence:RefSeq:WP_009490160.1
COORDINATES: similar to AA sequence:RefSeq:WP_009490158.1
COORDINATES: similar to AA sequence:RefSeq:WP_019904216.1
COORDINATES: similar to AA sequence:RefSeq:WP_007896218.1
COORDINATES: similar to AA sequence:RefSeq:WP_018319772.1
COORDINATES: protein motif:HMM:NF012360.2
COORDINATES: similar to AA sequence:RefSeq:WP_007879201.1
COORDINATES: similar to AA sequence:RefSeq:WP_008532648.1
COORDINATES: similar to AA sequence:RefSeq:WP_018000588.1
IclR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018000587.1
GO:0008410 - CoA-transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010394596.1
COORDINATES: similar to AA sequence:RefSeq:WP_003529462.1
COORDINATES: similar to AA sequence:RefSeq:WP_017998607.1
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003678381.1
GO:0047348 - glycerol-3-phosphate cytidylyltransferase activity [Evidence IEA]
glycerol-3-phosphate cytidylyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_028714619.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016357.2
COORDINATES: protein motif:HMM:NF033892.1
XcbB/CpsF family capsular polysaccharide biosynthesis protein
COORDINATES: similar to AA sequence:RefSeq:WP_010396516.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396514.1
energy-coupling factor transporter transmembrane component T
COORDINATES: similar to AA sequence:RefSeq:WP_018001425.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001704.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001703.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001702.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_011748414.1
COORDINATES: similar to AA sequence:RefSeq:WP_010400757.1
COORDINATES: similar to AA sequence:RefSeq:WP_011748412.1
COORDINATES: protein motif:HMM:NF012744.2
COORDINATES: protein motif:HMM:NF025751.2
COORDINATES: similar to AA sequence:RefSeq:WP_010392265.1
COORDINATES: similar to AA sequence:RefSeq:WP_005013272.1
COORDINATES: similar to AA sequence:RefSeq:WP_007606105.1
COORDINATES: similar to AA sequence:RefSeq:WP_019172424.1
COORDINATES: similar to AA sequence:RefSeq:WP_019172425.1
COORDINATES: similar to AA sequence:RefSeq:WP_014746359.1
COORDINATES: similar to AA sequence:RefSeq:WP_014746358.1
COORDINATES: similar to AA sequence:RefSeq:WP_019172429.1
COORDINATES: similar to AA sequence:RefSeq:WP_019657215.1
COORDINATES: similar to AA sequence:RefSeq:WP_019172431.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_019657214.1
COORDINATES: similar to AA sequence:RefSeq:WP_019657213.1
COORDINATES: similar to AA sequence:RefSeq:WP_011982668.1
COORDINATES: similar to AA sequence:RefSeq:WP_010392163.1
COORDINATES: similar to AA sequence:RefSeq:WP_010392161.1
COORDINATES: similar to AA sequence:RefSeq:WP_010392158.1
CerR family C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017998856.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396397.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396394.1
GO:0008927 - mannonate dehydratase activity [Evidence IEA]
GO:0006064 - glucuronate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011751280.1
COORDINATES: similar to AA sequence:RefSeq:WP_017998852.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396385.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396383.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396381.1
COORDINATES: similar to AA sequence:RefSeq:WP_017998848.1
COORDINATES: similar to AA sequence:RefSeq:WP_019466883.1
COORDINATES: similar to AA sequence:RefSeq:WP_012049347.1
GO:0019346 - transsulfuration [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010397745.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751289.1
COORDINATES: similar to AA sequence:RefSeq:WP_010397750.1
COORDINATES: similar to AA sequence:RefSeq:WP_010397752.1
COORDINATES: similar to AA sequence:RefSeq:WP_010397755.1
COORDINATES: similar to AA sequence:RefSeq:WP_010397757.1
COORDINATES: similar to AA sequence:RefSeq:WP_010397760.1
COORDINATES: similar to AA sequence:RefSeq:WP_004111158.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396957.1
COORDINATES: similar to AA sequence:RefSeq:WP_003525357.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396961.1
COORDINATES: similar to AA sequence:RefSeq:WP_003525354.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751300.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396968.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396971.1
COORDINATES: similar to AA sequence:RefSeq:WP_014538176.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396978.1
COORDINATES: similar to AA sequence:RefSeq:WP_013652599.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0010181 - FMN binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]; GO:0003959 - NADPH dehydrogenase activity [Evidence IEA]
bifunctional salicylyl-CoA 5-hydroxylase/oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_010396983.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396985.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751308.1
COORDINATES: similar to AA sequence:RefSeq:WP_019962586.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010396995.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396997.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396998.1
COORDINATES: similar to AA sequence:RefSeq:WP_010397002.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751314.1
COORDINATES: similar to AA sequence:RefSeq:WP_010397007.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751316.1
COORDINATES: similar to AA sequence:RefSeq:WP_008560709.1
COORDINATES: similar to AA sequence:RefSeq:WP_011545426.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820102.1
COORDINATES: similar to AA sequence:RefSeq:WP_011156823.1
COORDINATES: similar to AA sequence:RefSeq:WP_004539322.1
COORDINATES: similar to AA sequence:RefSeq:WP_010394661.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751323.1
GO:0009486 - cytochrome bo3 ubiquinol oxidase activity [Evidence IEA]
GO:0015990 - electron transport coupled proton transport [Evidence IEA]
cytochrome o ubiquinol oxidase subunit IV
COORDINATES: similar to AA sequence:RefSeq:WP_018001323.1
cytochrome o ubiquinol oxidase subunit III
COORDINATES: similar to AA sequence:RefSeq:WP_010394655.1
cytochrome o ubiquinol oxidase subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_010394653.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001320.1
COORDINATES: similar to AA sequence:RefSeq:WP_010393468.1
putative nucleotidyltransferase substrate binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011766144.1
COORDINATES: similar to AA sequence:RefSeq:WP_012114447.1
COORDINATES: similar to AA sequence:RefSeq:WP_010393471.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001485.1
GO:0004527 - exonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010393950.1
COORDINATES: similar to AA sequence:RefSeq:WP_010393948.1
GO:0008783 - agmatinase activity [Evidence IEA]
GO:0008295 - spermidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010398940.1
COORDINATES: similar to AA sequence:RefSeq:WP_010398934.1
COORDINATES: similar to AA sequence:RefSeq:WP_010398951.1
COORDINATES: similar to AA sequence:RefSeq:WP_010398931.1
COORDINATES: similar to AA sequence:RefSeq:WP_010398928.1
COORDINATES: similar to AA sequence:RefSeq:WP_008530030.1
COORDINATES: similar to AA sequence:RefSeq:WP_010392152.1
COORDINATES: similar to AA sequence:RefSeq:WP_013067933.1
COORDINATES: similar to AA sequence:RefSeq:WP_014530111.1
COORDINATES: similar to AA sequence:RefSeq:WP_017905492.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006391054.1
COORDINATES: similar to AA sequence:RefSeq:WP_015923195.1
COORDINATES: similar to AA sequence:RefSeq:WP_009797835.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751351.1
COORDINATES: similar to AA sequence:RefSeq:WP_018000519.1