Sulfurimonas paralvinellae strain GO25 plasmid unnamed, complete sequence.
Bacteria; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Sulfurimonadaceae; Sulfurimonas.
Sulfurimonas paralvinellae sp. nov., a novel mesophilic, hydrogen- and sulfur-oxidizing chemolithoautotroph within the Epsilonproteo- bacteria isolated from a deep-sea hydrothermal vent polychaete nest, reclassification of Thiomicrospira denitrificans as Sulfurimonas denitrificans comb. nov. and emended description of the genus Sulfurimonas
Submitted (11-JUL-2019) Key Laboratory of Marine Biogenetic Resources, Third Institute of Oceanography, State Oceanic Administration, Daxue Rode 178#, Xiamen, Fujian 361005, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP041407.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 4.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 200.0x\nSequencing Technology :: PacBio RSIII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/28/2023 09:14:51\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,141\nCDSs (total) :: 2,083\nGenes (coding) :: 2,073\nCDSs (with protein) :: 2,073\nGenes (RNA) :: 58\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 43\nncRNAs :: 3\nPseudo Genes (total) :: 10\nCDSs (without protein) :: 10\nPseudo Genes (ambiguous residues) :: 0 of 10\nPseudo Genes (frameshifted) :: 2 of 10\nPseudo Genes (incomplete) :: 7 of 10\nPseudo Genes (internal stop) :: 1 of 10\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Sulfurimonas paralvinellae
COORDINATES: protein motif:HMM:NF024872.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009779912.1
GO:0003824 - catalytic activity [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
secondary thiamine-phosphate synthase enzyme YjbQ
COORDINATES: similar to AA sequence:RefSeq:WP_012082657.1
COORDINATES: similar to AA sequence:RefSeq:WP_008340230.1
COORDINATES: similar to AA sequence:RefSeq:WP_008340187.1
COORDINATES: protein motif:HMM:NF012314.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_008338326.1
GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024758.2
GO:0008233 - peptidase activity [Evidence IEA]; GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017832.2
COORDINATES: similar to AA sequence:RefSeq:WP_013554767.1
ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF024946.2
COORDINATES: similar to AA sequence:RefSeq:WP_004511359.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012147891.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011372979.1
COORDINATES: protein motif:HMM:NF002586.0
COORDINATES: protein motif:HMM:NF024861.2
GO:0005515 - protein binding [Evidence IEA]; GO:0004521 - RNA endonuclease activity [Evidence IEA]
putative toxin-antitoxin system toxin component, PIN family
COORDINATES: similar to AA sequence:RefSeq:WP_013460155.1
COORDINATES: similar to AA sequence:RefSeq:WP_013460888.1
COORDINATES: similar to AA sequence:RefSeq:WP_014474513.1
GO:0008901 - ferredoxin hydrogenase activity [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]
hydrogenase maturation nickel metallochaperone HypA
COORDINATES: similar to AA sequence:RefSeq:WP_012083405.1
COORDINATES: similar to AA sequence:RefSeq:WP_012013059.1
hydrogenase expression/formation protein HypE
COORDINATES: similar to AA sequence:RefSeq:WP_013327104.1
GO:0016530 - metallochaperone activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008339266.1
HypC/HybG/HupF family hydrogenase formation chaperone
COORDINATES: similar to AA sequence:RefSeq:WP_013327106.1
GO:0016530 - metallochaperone activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
hydrogenase nickel incorporation protein HypB
COORDINATES: similar to AA sequence:RefSeq:WP_008339209.1
COORDINATES: similar to AA sequence:RefSeq:WP_012083402.1
HyaD/HybD family hydrogenase maturation endopeptidase
COORDINATES: protein motif:HMM:TIGR00072.1
GO:0008233 - peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013327108.1
GO:0003998 - acylphosphatase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019144.2
COORDINATES: similar to AA sequence:RefSeq:WP_013553046.1
GO:0009055 - electron transfer activity [Evidence IEA]
cytochrome b/b6 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008339563.1
nickel-dependent hydrogenase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012083423.1
COORDINATES: protein motif:HMM:NF012592.2
GO:0016151 - nickel cation binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012083425.1
COORDINATES: similar to AA sequence:RefSeq:WP_013460912.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF025869.2
COORDINATES: similar to AA sequence:RefSeq:WP_004512055.1
winged helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF017868.2
gamma-glutamylcyclotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012001252.1
COORDINATES: protein motif:HMM:NF024835.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: protein motif:HMM:NF018691.2