Sphingopyxis alaskensis RB2256 F plasmid, complete sequence.
type: Entry
definition: Sphingopyxis alaskensis RB2256 F plasmid, complete sequence.
sequence version: NC_008036.1
sequence date: 2023-02-12
sequence: sequence
division: CON
label: NC_008036.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02598319
keyword: RefSeq
source: Sphingopyxis alaskensis RB2256
organism: Sphingopyxis alaskensis RB2256
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.
reference: 1
references: 19805210
reference: 2
reference: 3
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP000357.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 3634495\nSource DNA and bacteria available from Rick Cavicchioli\n(rcavicchioli@unsw.edu.au)\nContacts: Rick Cavicchioli (rcavicchioli@unsw.edu.au)\n Paul Richardson (microbes@cuba.jgi-psf.org)\nQuality assurance done by JGI-Stanford\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-LLNL\nFinished microbial genomes have been curated to close all gaps with\ngreater than 98% coverage of at least two independent clones. Each\nbase pair has a minimum q (quality) value of 30 and the total error\nrate is less than one per 50000.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. it is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376)\nAdditional Notes:\nSphingopyxis alaskensis RB2256 appears to have about a 28.5kb\nextrachromosomal piece of DNA with significantly lower coverage\nthan the chromosome. It appears to be of F plasmid origin because\nof the presence of traA gene, a conjugal transfer protein. It can\nbe integrated into the genome between 856688 and 859197, excising a\npiece of chromosomal DNA 2517 bp long. Perhaps a fraction of the\npopulation has this 28.5 kb fragment integrated. Within 2 kb of\nthe excision point is an IS21 element with ORF1 and ORF2 of\ntransposase and perfect inverted repeats. However, we have been\nunsuccessful in circularizing the 28.5 kb fragment with pcr,\nperhaps because of the low representation in the genome.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-…

sequence
subclass of: SO_0000155
sequence length: 28543
topology: linear
so has quality: SO_0000987
location: 1..28543
location: region:1-28543:1
RO_0002162: 317655

NC_008036
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02598319
type: BioSample
SIO_000068: biosample

1
title: The genomic basis of trophic strategy in marine bacteria
author: Lauro, F.M.
author: McDougald, D.
author: Thomas, T.
author: Williams, T.J.
author: Egan, S.
author: Rice, S.
author: DeMaere, M.Z.
author: Ting, L.
author: Ertan, H.
author: Johnson, J.
author: Ferriera, S.
author: Lapidus, A.
author: Anderson, I.
author: Kyrpides, N.
author: Munk, A.C.
author: Detter, C.
author: Han, C.S.
author: Brown, M.V.
author: Robb, F.T.
author: Kjelleberg, S.
author: Cavicchioli, R.
journal: Proc Natl Acad Sci U S A
volume: 106
issue: 37
pages: 15527-15533
year: 2009
pubmed: 19805210

19805210
type: PubMed
SIO_000068: pubmed

2
title: Complete sequence of F plasmid of Sphingopyxis alaskensis RB2256
author: Copeland, A.
author: Lucas, S.
author: Lapidus, A.
author: Barry, K.
author: Detter, J.C.
author: Glavina del Rio, T.
author: Hammon, N.
author: Israni, S.
author: Dalin, E.
author: Tice, H.
author: Pitluck, S.
author: Brettin, T.
author: Bruce, D.
author: Han, C.
author: Tapia, R.
author: Munk, A.C.
author: Chertkov, O.
author: Gilna, P.
author: Schmutz, J.
author: Larimer, F.
author: Land, M.
author: Hauser, L.
author: Kyrpides, N.
author: Kim, E.
author: Cavicchioli, R.
author: Robb, F.
author: Ertan, H.
author: Schut, F.
author: Ting, L.M.
author: Richardson, P.
journal: Unpublished

3
title: Direct Submission
author: Copeland, A.
author: Lucas, S.
author: Lapidus, A.
author: Barry, K.
author: Detter, J.C.
author: Glavina del Rio, T.
author: Hammon, N.
author: Israni, S.
author: Dalin, E.
author: Tice, H.
author: Pitluck, S.
author: Brettin, T.
author: Bruce, D.
author: Han, C.
author: Tapia, R.
author: Munk, A.C.
author: Chertkov, O.
author: Gilna, P.
author: Schmutz, J.
author: Larimer, F.
author: Land, M.
author: Hauser, L.
author: Kyrpides, N.
author: Kim, E.
author: Cavicchioli, R.
author: Robb, F.
author: Ertan, H.
author: Schut, F.
author: Ting, L.M.
author: Richardson, P.
journal: Submitted (20-APR-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28543:1
position: 28543
reference: sequence
type: ForwardStrandPosition
type: ExactPosition
type: FuzzyPosition

feature:1-28543:1:source
so part of: sequence
organism: Sphingopyxis alaskensis RB2256
mol type: genomic DNA
strain: RB2256
type material: type strain of Sphingopyxis alaskensis
plasmid: F plasmid

317655
type: Taxonomy
SIO_000068: taxonomy

SALA_RS16990
type: Gene
subclass of: SO_0000704
RO_0002162: 317655
locus tag: SALA_RS16990
old locus tag: Sala_3189
so part of: sequence
location: complement(290..970)
location: region:290-970:-1
so has part: feature:290-970:-1:exon
subclass of: SO_0000010

position:290:-1
position: 290
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:970:-1
position: 970
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:290-970:-1:exon

SALA_RS16990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 317655
locus tag: SALA_RS16990
old locus tag: Sala_3189
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014492790.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phytanoyl-CoA dioxygenase family protein
translation: MLKDRPTTQFAAYGAQLFKGAISHCIDDVISALAEVPADGAGVRLHGIPALDPILAREGPIGAIAASALGNSSRPVRAILFNKSTISNWALAWHQDRTICVKERRDAPGFGPWTLKSGMNHVAPPFDLLTRMVTVRAHIDNVPASNAPLLIAPGSHTYGRIAVDRVKGVVDRCGTAVCLAEAGDVWLYATPILHASDAASAPKSRRVLQVDFAAEELPHGLEWLGV
SIO_010081: SALA_RS16990
subclass of: SO_0000673
so part of: SALA_RS16990
location: complement(290..970)
location: region:290-970:-1
so has part: feature:290-970:-1:exon

WP_011536516.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:290-970:-1:exon

SALA_RS16195
type: Gene
subclass of: SO_0000704
RO_0002162: 317655
locus tag: SALA_RS16195
old locus tag: Sala_3190
so part of: sequence
location: complement(1028..1795)
location: region:1028-1795:-1
so has part: feature:1028-1795:-1:exon
subclass of: SO_0000010

position:1028:-1
position: 1028
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1795:-1
position: 1795
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1028-1795:-1:exon

SALA_RS16195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 317655
locus tag: SALA_RS16195
old locus tag: Sala_3190
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009802117.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF6118 family protein
translation: MMEDDQIEEVQLDLEVEEPPAPEAEPEIDTAEESDPATEAFARLEGEMAMVRHTVQNMARERADIVIPDYTATLGQMADQLAQVSKTLTAIGNKPAIELTPEDIAVQIKRASLDMLCDSSDLFRQGRKDLDNATGRLAAIVGRVRAEDEQKRQTWRFAGMGFLVGILLWSILPGTIARAMPESWQLPERMARKSVGEPSIVEAGIRLIRSQNPEAWEELAEAQRVLSANREKLSRCTEKARKEERPVSCSIRIAQ
SIO_010081: SALA_RS16195
subclass of: SO_0000673
so part of: SALA_RS16195
location: complement(1028..1795)
location: region:1028-1795:-1
so has part: feature:1028-1795:-1:exon

WP_011536517.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1028-1795:-1:exon

SALA_RS16200
type: Gene
subclass of: SO_0000704
RO_0002162: 317655
gene: traA
locus tag: SALA_RS16200
old locus tag: Sala_3191
so part of: sequence
location: complement(1803..4688)
location: region:1803-4688:-1
so has part: feature:1803-4688:-1:exon
subclass of: SO_0000010

position:1803:-1
position: 1803
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4688:-1
position: 4688
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1803-4688:-1:exon

SALA_RS16200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 317655
gene: traA
locus tag: SALA_RS16200
old locus tag: Sala_3191
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009802116.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Ti-type conjugative transfer relaxase TraA
translation: MAIFHFSAKVIGRSSGRSAVAAAAYRAGEQLHDERIDRTHDFTNKAGVLHSEVMLPKGAPEALADRATLWNAVEAAEKRKDAQLAREVEFALPRELSKKDNIRLAREFVKAEFVEKGMIADLNVHWDIGEDGKAKPHAHVMLTMREVTKDGFGAKVRDWNKTALIEQWRERWADHVNRALAERDIDTRIDHRSLEAQGIALEPQDKIGPAASRIGGRGLEAERIEEHRAIAQRNGERIIANPSLALDAITHQQATFTRRDLAAFVHRHSDGKEQFDAAYNAVRAAPELIALGKDGRGQDRFTSRAMIETEQRLHCAADAMAQRAGHAVNDVQRNAAFASAAKRGLVLSGEQKSAFEYVTKKGGLAVIVGYAGTGKSAMLGVAREAWESAGYNVRGAALSGITAEGLENGSGIASRTIASLEHQWGKGCEQLTAKDVLVIDEAGMVGTRQMERVLSHAAKSSAKLVLVGDQQQLQAIEAGAAFRAIHERHGGVEISEVRRQLSAWQQDTTRQLATGRTGEAIRTYEERGMVYATDTREVARTELVERWDRERQDSPDERRIILTHTNDEVRELNQMAREKMRVAGALGADATIKAARGERKFASGDRIIFLRNERELGVKNGTLGTVAMSSPQRMAVRTDDGREVAFDTKYYAHIDHGYAATIHKAQGMTVDRTHILATPGMDSHSAYVAMSRHREGLALHYGRDDFADQSKLVRTLSRERGKDMAGDYKPEQAFAELRGISFRERVMAMVRQVPEKAKSIFGNFRPQARQLEPLPAKSNTQNDQRRAVERYARALGDIGTMQAQGLPVLPHQKDALEKAGKALDAIRPHAATDLAKALERRPELIPEAAGGRSQEAMRAMNQEAAVRTDPALRSERFVSDWQGLSTARKQLEQQGDRAGAVRVSAKQNELAKSLERDPQVEGLLRGKTRELGIDPKPERSIAKELTATLARERTRAFDMGI
SIO_010081: SALA_RS16200
subclass of: SO_0000673
so part of: SALA_RS16200
location: complement(1803..4688)
location: region:1803-4688:-1
so has part: feature:1803-4688:-1:exon

WP_041384243.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1803-4688:-1:exon

SALA_RS16205
type: Gene
subclass of: SO_0000704
RO_0002162: 317655
locus tag: SALA_RS16205
old locus tag: Sala_3192
so part of: sequence
location: 4862..5167
location: region:4862-5167:1
so has part: feature:4862-5167:1:exon
subclass of: SO_0000010

position:4862:1
position: 4862
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5167:1
position: 5167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4862-5167:1:exon

SALA_RS16205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 317655
locus tag: SALA_RS16205
old locus tag: Sala_3192
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009802115.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TraD
translation: MRKPRDFDSELKALADKAKQMKERRVRDLGALVTATGADALDADVLAGALLEAVDNNDKAISEGWRKRGAAFFQGKQRNTASGPRQQPEGTLPLDGGAASA
SIO_010081: SALA_RS16205
subclass of: SO_0000673
so part of: SALA_RS16205
location: 4862..5167
location: region:4862-5167:1
so has part: feature:4862-5167:1:exon

WP_011536519.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4862-5167:1:exon

SALA_RS16210
type: Gene
subclass of: SO_0000704
RO_0002162: 317655
locus tag: SALA_RS16210
old locus tag: Sala_3193
so part of: sequence
location: 5145..5417
location: region:5145-5417:1
so has part: feature:5145-5417:1:exon
subclass of: SO_0000010

position:5145:1
position: 5145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5417:1
position: 5417
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5145-5417:1:exon

SALA_RS16210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 317655
locus tag: SALA_RS16210
old locus tag: Sala_3193
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006023181.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TraD
translation: MAARHRLEAAKARTDMREWQVKRRERTRQLIELGGLVAKADLVELTDDDRAALYGAFLTVAAKLRGPDGAQALVLFRRKGKRAFEAEQSD
SIO_010081: SALA_RS16210
subclass of: SO_0000673
so part of: SALA_RS16210
location: 5145..5417
location: region:5145-5417:1
so has part: feature:5145-5417:1:exon

WP_011536520.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5145-5417:1:exon

SALA_RS16215
type: Gene
subclass of: SO_0000704
RO_0002162: 317655
locus tag: SALA_RS16215
old locus tag: Sala_3194
so part of: sequence
location: 5726..6991
location: region:5726-6991:1
so has part: feature:5726-6991:1:exon
subclass of: SO_0000010

position:5726:1
position: 5726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6991:1
position: 6991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5726-6991:1:exon

SALA_RS16215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 317655
locus tag: SALA_RS16215
old locus tag: Sala_3194
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007015740.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF3422 domain-containing protein
translation: MREHEVRRQVVSEMHLRRWPLLQLPVAVFQWVLEVGPGEREAERSVLSALCGSQSDEENPRHLSGALSGDVSFTWERQSEGSTLTVFCPGRAIEVLLAPGLDSSVGEAIDWAETMPGAIIRATSIWVGGDEAEVERALPAVDFNRSELVSCGLSGGVRIWSDFRIHPDGRGRLVVSAGEVDRSDLTRQLQQLQELGNYRNKALLGLPVAQEAWPRLDAAERELAALAKAVTSSAASDDDLLAQLSDLSLELSTIATSIDYRMNATAAYSRLVEERLAQLAPEPIRGFASLVDFTERRFLPAARTCAALTERERQLTRRARQISELLRARIETRIENQNAKLLRSMERSTTMQVRLQQIVEGLSVVAVSYYAIGLLGYAIKGASHHFDWVDPEVAIALLVLPVLGCVWFALHSLKKRVLGGD
SIO_010081: SALA_RS16215
subclass of: SO_0000673
so part of: SALA_RS16215
location: 5726..6991
location: region:5726-6991:1
so has part: feature:5726-6991:1:exon

WP_011536521.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5726-6991:1:exon

SALA_RS16220
type: Gene
subclass of: SO_0000704
RO_0002162: 317655
locus tag: SALA_RS16220
old locus tag: Sala_3195
so part of: sequence
location: 7147..8589
location: region:7147-8589:1
so has part: feature:7147-8589:1:exon
subclass of: SO_0000010

position:7147:1
position: 7147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8589:1
position: 8589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7147-8589:1:exon

SALA_RS16220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 317655
locus tag: SALA_RS16220
old locus tag: Sala_3195
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007015741.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: sigma-54 dependent transcriptional regulator
translation: MAGELTILVVSRDDALISAARAGLKERADYRLVIAEDGKTAQERLNDIEVHLLLCDLDTVDDAQDNILTRARVSHPGVCRIAVSSQNRDDADSEAVRRSAAYLYLFKPLTPHQIALMVKRSLEMNELSRRHRLLSRELKISVDDQIFEERVDMSVKGGYSQFEKLVYASAKMADLIVEARKAAVTDLPVLIEGDTGTGKELLARAIHFNSTRVDSPIHVQNCGGMLDSTLHSELFGHVRGAYTGATADRLGLFRAADGGTVFLDEISDVSPSFQVSLLRFLQNGEVKPLGSDKLLHANVRIIAASNRPLLEMVEKGEFRRDLYYRLKGFSLSIPALRDRREDIPVLTDFFIEKYAGVVGRRVIGITQSALDRLQAHQYPGNVRELESEIRRAVALAENGGYITERNLSAVFDNLVVAPDVGQQAEMEGGTLKEMVERLEQRVVVGALTRFRWNQSKAADALGLSRVGLANKIKRYGLHDG
SIO_010081: SALA_RS16220
subclass of: SO_0000673
so part of: SALA_RS16220
location: 7147..8589
location: region:7147-8589:1
so has part: feature:7147-8589:1:exon

WP_231735374.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7147-8589:1:exon

SALA_RS16225
type: Gene
subclass of: SO_0000704
RO_0002162: 317655
locus tag: SALA_RS16225
old locus tag: Sala_3197
so part of: sequence
location: 9081..10043
location: region:9081-10043:1
so has part: feature:9081-10043:1:exon
subclass of: SO_0000010

position:9081:1
position: 9081
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10043:1
position: 10043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9081-10043:1:exon

SALA_RS16225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 317655
locus tag: SALA_RS16225
old locus tag: Sala_3197
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015126474.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hydrogenase
translation: MANLLWLQGGACSGNTMSFLNAEEPSACDLVTDFGINVLWHPSLGLELGENVKVMMEKCLSGEIPLDIFVFEGSVINAPNGTGEWNRFCGRPMKDWVADLSAKAQFVVAIGDCATWGGIPATAPNPSESEGLQFLKRAKGGALGEGFTSQAGLPVINIPGCPAHPDWVTQILVAVATGRAGDLTLDEFHRPKTFFSSFTQTGCTRNMHFAYKVSTTAFGQRKGCLYYDLGCRGPMTHSPCNRILWNRVSSKTRAGMPCLGCTEPEFPFFDLAPGTVFKTQTVMGVPKDLPLGVDRTGYVKLTAAAKGAAPAWAEEDIFVV
SIO_010081: SALA_RS16225
subclass of: SO_0000673
so part of: SALA_RS16225
location: 9081..10043
location: region:9081-10043:1
so has part: feature:9081-10043:1:exon

WP_011536524.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9081-10043:1:exon

SALA_RS16230
type: Gene
subclass of: SO_0000704
RO_0002162: 317655
locus tag: SALA_RS16230
old locus tag: Sala_3198
so part of: sequence
location: 10057..11700
location: region:10057-11700:1
so has part: feature:10057-11700:1:exon
subclass of: SO_0000010

position:10057:1
position: 10057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11700:1
position: 11700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10057-11700:1:exon

SALA_RS16230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 317655
locus tag: SALA_RS16230
old locus tag: Sala_3198
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020176873.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: nickel-dependent hydrogenase large subunit
translation: MARSEARRTQNFGRITMAATQTLDISPVGRVEGDLDVRVDIENGIVTNAWTQAEMFRGFEVILKNKDPQAGLVVTPRACGICGASHLSCAAWALDTAWGTTVPRNAILARNLGQIVETIQSIPRHHYGLFMIDYTNQNYAKSKFYEEAVKRYAPFTGTSYEAGVTISGRPVEIYALLGGQWPHSSFMVPGGVMCAPTLTDVTRAWSILEHFRRNWIEPLFLGCSMERYEEIRTYDDLMAWLDEKPEHANSDLGMFIRMSLDIGLDKYGKGHGKFISWGYLPHEDRYNNPTIEGRNGAVIMKSGVFDGASDTFKLMDQGNTREDMQHAWYDEGDGLHPFDRTTNPVAKNDIDTDGKYSWSTAVRHSDNGRLEAGPLARQLIAGGDHGESWQHSDGLVLDMYRKLGGASIYLRHFARLHELCKLYRESERILREFRLNDEWYIKPTERDGQGWGATEAARGALCHWIDVRDGKIHNYQIIAPTTWNVGPRASNGELGPIEEALIGTPIANTSDPVEVGHVCRSYDSCLVCTVHAHDAKTGEELARFRTA
SIO_010081: SALA_RS16230
subclass of: SO_0000673
so part of: SALA_RS16230
location: 10057..11700
location: region:10057-11700:1
so has part: feature:10057-11700:1:exon

WP_011536525.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10057-11700:1:exon

SALA_RS16235
type: Gene
subclass of: SO_0000704
RO_0002162: 317655
locus tag: SALA_RS16235
old locus tag: Sala_3199
so part of: sequence
location: 11790..12170
location: region:11790-12170:1
so has part: feature:11790-12170:1:exon
subclass of: SO_0000010

position:11790:1
position: 11790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12170:1
position: 12170
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11790-12170:1:exon

SALA_RS16235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 317655
locus tag: SALA_RS16235
old locus tag: Sala_3199
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013896579.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTGDNTELQRQREWLLSRYGVVPSEADHATLLRMIEDYLNEGLETQVEPFPETDREFSGILDELRALDPDDLRAKLDISGWLLRPYGADEMRCQECMYYLVHRRWCDLPELSLPAEPEWWCRLWRI
SIO_010081: SALA_RS16235
subclass of: SO_0000673
so part of: SALA_RS16235
location: 11790..12170
location: region:11790-12170:1
so has part: feature:11790-12170:1:exon

WP_007015745.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11790-12170:1:exon

SALA_RS16240
type: Gene
subclass of: SO_0000704
RO_0002162: 317655
locus tag: SALA_RS16240
old locus tag: Sala_3200
so part of: sequence
location: 12182..12499
location: region:12182-12499:1
so has part: feature:12182-12499:1:exon
subclass of: SO_0000010

position:12182:1
position: 12182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12499:1
position: 12499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12182-12499:1:exon

SALA_RS16240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 317655
locus tag: SALA_RS16240
old locus tag: Sala_3200
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012040800.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MATDADETLRQEIAGLLAGGLETEVFPRAEDSAQVNAIVSRLQSEGKDLASKLVVAGFTDHTITADELEQPCETCMYYLIKRRFCDLPELMLPVEPEWSCRLWRI
SIO_010081: SALA_RS16240
subclass of: SO_0000673
so part of: SALA_RS16240
location: 12182..12499
location: region:12182-12499:1
so has part: feature:12182-12499:1:exon

WP_041384263.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12182-12499:1:exon

SALA_RS16245
type: Gene
subclass of: SO_0000704
RO_0002162: 317655
locus tag: SALA_RS16245
old locus tag: Sala_3201
so part of: sequence
location: 12487..12972
location: region:12487-12972:1
so has part: feature:12487-12972:1:exon
subclass of: SO_0000010

position:12487:1
position: 12487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12972:1
position: 12972
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12487-12972:1:exon

SALA_RS16245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 317655
locus tag: SALA_RS16245
old locus tag: Sala_3201
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007015747.1
GO function: GO:0008233 - peptidase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hydrogenase maturation protease
translation: MANLDAPATAIIGCGNINRGDDGAGPAVIARLAAEDLPSDVELLDAGTDGMAVMYRARGAQQLIVIDAREPEGKPGAIYEVPGDVLAAEPVHGVGLHAFRWDNALFVGRKIFGDDFPSDVQVYLIEAQTLDYATELSGPVVAAVEKVAAKIAARLVIAPEA
SIO_010081: SALA_RS16245
subclass of: SO_0000673
so part of: SALA_RS16245
location: 12487..12972
location: region:12487-12972:1
so has part: feature:12487-12972:1:exon

WP_011536528.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12487-12972:1:exon

SALA_RS16250
type: Gene
subclass of: SO_0000704
RO_0002162: 317655
locus tag: SALA_RS16250
old locus tag: Sala_3202
so part of: sequence
location: 12976..13287
location: region:12976-13287:1
so has part: feature:12976-13287:1:exon
subclass of: SO_0000010

position:12976:1
position: 12976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13287:1
position: 13287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12976-13287:1:exon

SALA_RS16250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 317655
locus tag: SALA_RS16250
old locus tag: Sala_3202
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007015748.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEHTISVARGTIRFPAGLVATYFSGIDAVAVLIDGATLRILPVFHAAAGGALLKQRNAQGDRVVGAFDVFEAHGLADFEAQDVPVRWSSGDAALLADLPVTDN
SIO_010081: SALA_RS16250
subclass of: SO_0000673
so part of: SALA_RS16250
location: 12976..13287
location: region:12976-13287:1
so has part: feature:12976-13287:1:exon

WP_011536529.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12976-13287:1:exon

SALA_RS16255
type: Gene
subclass of: SO_0000704
RO_0002162: 317655
locus tag: SALA_RS16255
old locus tag: Sala_3203
so part of: sequence
location: 13385..14383
location: region:13385-14383:1
so has part: feature:13385-14383:1:exon
subclass of: SO_0000010

position:13385:1
position: 13385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14383:1
position: 14383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13385-14383:1:exon

SALA_RS16255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 317655
locus tag: SALA_RS16255
old locus tag: Sala_3203
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007015749.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVALSRTEDQLAAALKVVEESDASVIEKAEMLMEIAMGLQQRPKEADDLLAAIELYEQAIHQCGDQDALLTARIRARMATALMAIPSEIAAPIEQARDLLKQAISVLAEGGSGEELAEAEMNLGLALQTLAGAGMARITDAISAYQRSLRTFNKLRHPREYAILNNNLATAFLSVPITSDSGKISEALAVQSFEEGLSAVNLIDQPMEYAMLQNNLGNALQYASSSHRVENGFRALEAYDEALKVRQRDNTPLEYANTIANKANCLCNLPDDPQDGEAGNPRNIAQAIKLLREAREIFAAAGAQDRAESAAQTIIELEMAVRGEPSRANGGF
SIO_010081: SALA_RS16255
subclass of: SO_0000673
so part of: SALA_RS16255
location: 13385..14383
location: region:13385-14383:1
so has part: feature:13385-14383:1:exon

WP_011536530.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13385-14383:1:exon

SALA_RS16260
type: Gene
subclass of: SO_0000704
RO_0002162: 317655
locus tag: SALA_RS16260
old locus tag: Sala_3204
so part of: sequence
location: 14390..14602
location: region:14390-14602:1
so has part: feature:14390-14602:1:exon
subclass of: SO_0000010

position:14390:1
position: 14390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14602:1
position: 14602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14390-14602:1:exon

SALA_RS16260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 317655
locus tag: SALA_RS16260
old locus tag: Sala_3204
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020176868.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEVNLLVILLLALVAGIAGALVGGALSGLKIGGAALGKQLAAQLGGLYGLLAGVPGVVMGLAVLFFMQSA
SIO_010081: SALA_RS16260
subclass of: SO_0000673
so part of: SALA_RS16260
location: 14390..14602
location: region:14390-14602:1
so has part: feature:14390-14602:1:exon

WP_011536531.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14390-14602:1:exon

SALA_RS16265
type: Gene
subclass of: SO_0000704
RO_0002162: 317655
locus tag: SALA_RS16265
so part of: sequence
location: 14614..14835
location: region:14614-14835:1
so has part: feature:14614-14835:1:exon
subclass of: SO_0000010

position:14614:1
position: 14614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14835:1
position: 14835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14614-14835:1:exon

SALA_RS16265
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 317655
locus tag: SALA_RS16265
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFDMVFSSTKLFFQGKLFQDTALAIRLLVTGAAAATVATVLVGMVAPLWVAAIAGGLVGGLLQPYLYRNIKYA
SIO_010081: SALA_RS16265
subclass of: SO_0000673
so part of: SALA_RS16265
location: 14614..14835
location: region:14614-14835:1
so has part: feature:14614-14835:1:exon

WP_041384247.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14614-14835:1:exon

SALA_RS16270
type: Gene
subclass of: SO_0000704
RO_0002162: 317655
locus tag: SALA_RS16270
old locus tag: Sala_3205
so part of: sequence
location: 14840..15706
location: region:14840-15706:1
so has part: feature:14840-15706:1:exon
subclass of: SO_0000010

position:14840:1
position: 14840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15706:1
position: 15706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14840-15706:1:exon

SALA_RS16270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 317655
locus tag: SALA_RS16270
old locus tag: Sala_3205
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007015752.1
GO function: GO:0005506 - iron ion binding [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
GO process: GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NifU family protein
translation: MSEADPQRPEPTLSRLLGDLTALEALAENWEEGARNGAQARAAALDALNAEAFRRLIRSLRELPGAAEALRQAAADEVVYCVLRRHGILKASLFERVDAALATVRPTLAGHGGDAELVEVSGDKAVVRFLGACDGCPASALTFYAGVKKAITEQVPEIREVKQAKGLGGGGGDTVHFTSPFAAHEHEGWLHALQLTELPDGTTSVLELEGRSLLLSRFGDKVTCFENACAHLGMPMDQAEIADGFITCPHHGFRYALESGECLTAPEVQLQPHAVRVRGDAIELRLTR
SIO_010081: SALA_RS16270
subclass of: SO_0000673
so part of: SALA_RS16270
location: 14840..15706
location: region:14840-15706:1
so has part: feature:14840-15706:1:exon

WP_041384249.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14840-15706:1:exon

SALA_RS16275
type: Gene
subclass of: SO_0000704
RO_0002162: 317655
locus tag: SALA_RS16275
old locus tag: Sala_3206
so part of: sequence
location: 15703..16881
location: region:15703-16881:1
so has part: feature:15703-16881:1:exon
subclass of: SO_0000010

position:15703:1
position: 15703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16881:1
position: 16881
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15703-16881:1:exon

SALA_RS16275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 317655
locus tag: SALA_RS16275
old locus tag: Sala_3206
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007015753.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NHL repeat containing protein
translation: MKVSLAPSFRPVKAEGTQIAGAPLLEEGGPRVVLGWSPGDVATPLSPAAASLFGPRGVCLHPDGTLWVADTGHHRLLGWRKIPQSDNEPADILIGQPSFCREGRNAKGPPGPATLNVPTGLCAWRGGLAVADAWNHRVLIWREVPTGNGQPADLVLGQEDSESVLANRGADRPTSASLHWPYGVAEVAGRLVVCDSGNRRLLVWSDPSETGQPADLVLGQHDFSTRDENAGGEVTAMSMRWPHGACWWNGHLALADSGNNRVMLWRGFPEHNGSPCDAILGQRDTAHCDHNMSSYYPSAASVNMPYATVEAGGQLIVADTANSRLLGWADSATGIAANQLCGQPDFASKGDNRWGMPERDSLCWPYGLSALGDLVAVADSGNNRVLLWNLAR
SIO_010081: SALA_RS16275
subclass of: SO_0000673
so part of: SALA_RS16275
location: 15703..16881
location: region:15703-16881:1
so has part: feature:15703-16881:1:exon

WP_041384250.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15703-16881:1:exon

SALA_RS16280
type: Gene
subclass of: SO_0000704
RO_0002162: 317655
gene: hypF
locus tag: SALA_RS16280
old locus tag: Sala_3207
so part of: sequence
location: 16863..19244
location: region:16863-19244:1
so has part: feature:16863-19244:1:exon
subclass of: SO_0000010

position:16863:1
position: 16863
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19244:1
position: 19244
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16863-19244:1:exon

SALA_RS16280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 317655
gene: hypF
locus tag: SALA_RS16280
old locus tag: Sala_3207
EC number: 6.1.2.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007015754.1
GO function: GO:0003998 - acylphosphatase activity [Evidence IEA]
GO process: GO:0036211 - protein modification process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: carbamoyltransferase HypF
translation: MESGAVTGERLLVRGQVQGVGFRPTVWRVARELELTGDVRNTSSGVEIRLWGEAVSRFESELRAALPALARIDAIERVAIDAVRPESFVIGASEGDGMRGAVTPDAAICSACLEEVRDPFERRYRYPFTNCTECGPRFSIIETGPYDRARTTMRGFAMCPECGEQYSDPTDRRFHAQPIACHVCGPRAWIERLGPGTVNHEAFSMMDDVDAAGGMLMNGHIVAIKGLGGFHLACDATRAEVVADLRMRKRRRGKAFALMARDLDVIRRYAEFSDQEAELLASPEAPIVLLRASGEPLAEAVAPGLDRIGFMLPHTPLHHLLLRRMKRPVVMTSGNLSGRPQCTSNEQARAELEGIAEFALMHDRHIANRIDDSVTRVDLGRVRLLRRARGYAPRAIDLPTGFPRDLSLLAMGAELKNSFCLVRDGEAVLSQHMGDLEDAATEDDVRRNLDLYTQLYDHQPAAIAVDAHPEYLSTKHGREIADGRPVIAVQHHHAHIAACLAENGRSLDAAPALGIALDGLGLGDDGTIWGGEFLICDYRGYRRAGMLKPVALPGGTAAIREPWRNAYAHLMAQMGWAEFAMNFADLPLFARLSAMPRSTIDAMIASGTNSPLSSSCGRLFDAAAAICGLAWDRQEYEGQAAMLLEAAIDPAALNEPDDLAYPFSIPLLGGRGLPYVEPLAVWRAMLGDLLLNTPVGVMCARFHRGLARSVVAMAQRLTADDGPDTVALSGGCFQNATLFRLVHEGLEQLGLNVLSHSRVPANDGGLALGQAAVAMAHLHEATAETENGREVCA
SIO_010081: SALA_RS16280
subclass of: SO_0000673
so part of: SALA_RS16280
location: 16863..19244
location: region:16863-19244:1
so has part: feature:16863-19244:1:exon

WP_011536534.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16863-19244:1:exon

SALA_RS16285
type: Gene
subclass of: SO_0000704
RO_0002162: 317655
gene: hypC
locus tag: SALA_RS16285
old locus tag: Sala_3208
so part of: sequence
location: 19235..19531
location: region:19235-19531:1
so has part: feature:19235-19531:1:exon
subclass of: SO_0000010

position:19235:1
position: 19235
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19531:1
position: 19531
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19235-19531:1:exon

SALA_RS16285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 317655
gene: hypC
locus tag: SALA_RS16285
old locus tag: Sala_3208
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011910301.1
GO function: GO:0016530 - metallochaperone activity [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA]
GO process: GO:0065003 - protein-containing complex assembly [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HypC/HybG/HupF family hydrogenase formation chaperone
translation: MCLGIPGQIVEITDAGRKLGVANVSGVRRPVNLACVIGEGSVEDLIGTWVLIHVGFAMSKIDEDQAAETLRILTELGEAQQELAAMRDGDRALGDAQW
SIO_010081: SALA_RS16285
subclass of: SO_0000673
so part of: SALA_RS16285
location: 19235..19531
location: region:19235-19531:1
so has part: feature:19235-19531:1:exon

WP_011536535.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19235-19531:1:exon

SALA_RS16290
type: Gene
subclass of: SO_0000704
RO_0002162: 317655
locus tag: SALA_RS16290
old locus tag: Sala_3209
so part of: sequence
location: 19567..20211
location: region:19567-20211:1
so has part: feature:19567-20211:1:exon
subclass of: SO_0000010

position:19567:1
position: 19567
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20211:1
position: 20211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19567-20211:1:exon

SALA_RS16290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 317655
locus tag: SALA_RS16290
old locus tag: Sala_3209
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007015756.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SIS domain-containing protein
translation: MRRGGEQLRASAQSLRHSVESKARDHTEVFGKFFAEQADELVAAATTLAASYRQGGRLLAMGNGGSSCDAAHVAVEFLHPVTAGRPALGAINLAADVAMLTAVGNDVGQDHVFVRPLIAHGRHGDCLIGFSTSGNSANLIRAFAKAREMGIATIGLAGGDGGEMARAGLDHLLVVPTGSIHRVQECHLAAYHILWDLTHTLLANDRAAPLEAGA
SIO_010081: SALA_RS16290
subclass of: SO_0000673
so part of: SALA_RS16290
location: 19567..20211
location: region:19567-20211:1
so has part: feature:19567-20211:1:exon

WP_049754768.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19567-20211:1:exon

SALA_RS16295
type: Gene
subclass of: SO_0000704
RO_0002162: 317655
gene: hypD
locus tag: SALA_RS16295
old locus tag: Sala_3210
so part of: sequence
location: 20208..21341
location: region:20208-21341:1
so has part: feature:20208-21341:1:exon
subclass of: SO_0000010

position:20208:1
position: 20208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21341:1
position: 21341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20208-21341:1:exon

SALA_RS16295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 317655
gene: hypD
locus tag: SALA_RS16295
old locus tag: Sala_3210
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007015757.1
GO function: GO:0016530 - metallochaperone activity [Evidence IEA]
GO process: GO:0036211 - protein modification process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hydrogenase formation protein HypD
translation: MKYVDEFRDPVRAGVLLKEIEALTAQIMAGRDRPVVIMEVCGGHTHSIFRYGIEKMLPPEIEFAHGPGCPVCVLPMGRVDDCVELAMKPEVIFTTFGDAMRVPGSRLSLLGAKAEGADVRMVYSPLDALALARANPDREVVFFGLGFETTMPSTALTILQAQAEGIGNFSLFCNHITIIPTIKAILDSPDMGIDGFLGPGHVSMVIGTDPYDFIARDYHRPLVVAGFEPLDVLHSVWMVLRQMAEGRAEIENQYDRIVPRHGNEASLAAVTEVFELREFFEWRGLGSIDHSGVQIREAYAAWDAERKFAVASPSIPDPKACQCGEVLKGAIKPWQCKLFGRSCTPETPMGALMVSSEGACAAYYQYGGIDAVPEPAQ
SIO_010081: SALA_RS16295
subclass of: SO_0000673
so part of: SALA_RS16295
location: 20208..21341
location: region:20208-21341:1
so has part: feature:20208-21341:1:exon

WP_011536537.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20208-21341:1:exon

SALA_RS16300
type: Gene
subclass of: SO_0000704
RO_0002162: 317655
gene: hypE
locus tag: SALA_RS16300
old locus tag: Sala_3211
so part of: sequence
location: 21338..22387
location: region:21338-22387:1
so has part: feature:21338-22387:1:exon
subclass of: SO_0000010

position:21338:1
position: 21338
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22387:1
position: 22387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21338-22387:1:exon

SALA_RS16300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 317655
gene: hypE
locus tag: SALA_RS16300
old locus tag: Sala_3211
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007015758.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hydrogenase expression/formation protein HypE
translation: MNAVTPTGNGRLRAERVTLAHGGGGKAMRDLIEDVFTSVFEPDGLEDQARLSHEMLAVEGARLAFTTDSFVVQPLEFPGGDIGKIAVCGTVNDLTVGGAQPLWLSAAFIIEEGTEVALLRRVAAAMRRAADEAGVRIVTGDTKVVERGAADTLFVTTSGVGVIPAGRELAAEKVRAGDVALVNGVLGDHGAAILAARGDMAFEADIRSDCRPLNHLMEAVIEAAPGVRCARDATRGGLASALNEISQASAIGIEIDEARLPMRAEVKGVCELLGLDPLYLANEGALVLFVPEEQAEAALAAMRSTEAGRDAAIIGRAAEMRSPRVVMHSLFGGSRIVDMLVGEQLPRIC
SIO_010081: SALA_RS16300
subclass of: SO_0000673
so part of: SALA_RS16300
location: 21338..22387
location: region:21338-22387:1
so has part: feature:21338-22387:1:exon

WP_011536538.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21338-22387:1:exon

SALA_RS16305
type: Gene
subclass of: SO_0000704
RO_0002162: 317655
locus tag: SALA_RS16305
old locus tag: Sala_3212
so part of: sequence
location: 22403..23122
location: region:22403-23122:1
so has part: feature:22403-23122:1:exon
subclass of: SO_0000010

position:22403:1
position: 22403
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23122:1
position: 23122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22403-23122:1:exon

SALA_RS16305
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 317655
locus tag: SALA_RS16305
old locus tag: Sala_3212
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011536539.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: high frequency lysogenization protein HflD
translation: MQLSLIALGFLAGMGHALEPDHLAAVGAMATGRNSRRSMVLRGAAWGLGHTLTLLAICSAVILLGMALTGRTAALLESAVGFMLILLGGDVLWRMRKARVHFHLHDHSDGERHFHAHSHLGERAPHDASRHEHSHPHKFPLKALAVGLVHGAAGSAALLTLAVASVGDPLLAVIYVLLFGVGSIAGMAALSFIASWPLGYAERVALRLHRALNLSLAVLALGLGLHTIYANLSGVLGAA
SIO_010081: SALA_RS16305
subclass of: SO_0000673
so part of: SALA_RS16305
location: 22403..23122
location: region:22403-23122:1
so has part: feature:22403-23122:1:exon

WP_011536539.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22403-23122:1:exon

SALA_RS16310
type: Gene
subclass of: SO_0000704
RO_0002162: 317655
locus tag: SALA_RS16310
old locus tag: Sala_3213
so part of: sequence
location: 23122..23364
location: region:23122-23364:1
so has part: feature:23122-23364:1:exon
subclass of: SO_0000010

position:23364:1
position: 23364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23122-23364:1:exon

SALA_RS16310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 317655
locus tag: SALA_RS16310
old locus tag: Sala_3213
inference: COORDINATES: protein motif:HMM:NF013334.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hydrogenase maturation nickel metallochaperone HypA
translation: MHELSLARNIVAIVGDHAQGRRVSRVRLAVGPYACVEREAIRFSFEVASEGTLLEKAALEFLEGETDQFIIKDFDMEEMA
SIO_010081: SALA_RS16310
subclass of: SO_0000673
so part of: SALA_RS16310
location: 23122..23364
location: region:23122-23364:1
so has part: feature:23122-23364:1:exon

WP_011536540.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23122-23364:1:exon

SALA_RS16315
type: Gene
subclass of: SO_0000704
RO_0002162: 317655
gene: hypB
locus tag: SALA_RS16315
old locus tag: Sala_3214
so part of: sequence
location: 23364..24275
location: region:23364-24275:1
so has part: feature:23364-24275:1:exon
subclass of: SO_0000010

position:24275:1
position: 24275
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23364-24275:1:exon

SALA_RS16315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 317655
gene: hypB
locus tag: SALA_RS16315
old locus tag: Sala_3214
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007015761.1
GO function: GO:0016530 - metallochaperone activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO process: GO:0036211 - protein modification process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hydrogenase nickel incorporation protein HypB
translation: MCGTCGCTDPDNEIAMIDPETGKRVLLRSGDDHSHDHDHSHDHDHSHDHTHSHDHDHSHGHHHHHHHDHGHDHHHHGEQAARVSLETAVLDRNDRQAARNRGWFEGRGVVALNLVSSPGAGKTTLLETTIRALEGSLPIAVIEGDQQTANDATRIREAGARAIQINTGAGCHLEADMVARAVEELAPKSGSLLLIENVGNLVCPAMFDLGERMKVAVISTPEGEDKPLKYPHMFRAAELVLINKIDLAPHVGFDEAACRANISAVNPNALVLLVSARTGEGMDAWYDFLRAMASAAADGGCLI
SIO_010081: SALA_RS16315
subclass of: SO_0000673
so part of: SALA_RS16315
location: 23364..24275
location: region:23364-24275:1
so has part: feature:23364-24275:1:exon

WP_011536541.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23364-24275:1:exon

SALA_RS16320
type: Gene
subclass of: SO_0000704
RO_0002162: 317655
locus tag: SALA_RS16320
old locus tag: Sala_3216
so part of: sequence
location: 24760..24966
location: region:24760-24966:1
so has part: feature:24760-24966:1:exon
subclass of: SO_0000010

position:24760:1
position: 24760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24966:1
position: 24966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24760-24966:1:exon

SALA_RS16320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 317655
locus tag: SALA_RS16320
old locus tag: Sala_3216
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009802104.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AlpA family transcriptional regulator
translation: MSNTERIIRLKTVLDRTGLSRSTIYRKIAEGTFPTQVKISVHGAGWHESAINRWIADPVHYREEDLAE
SIO_010081: SALA_RS16320
subclass of: SO_0000673
so part of: SALA_RS16320
location: 24760..24966
location: region:24760-24966:1
so has part: feature:24760-24966:1:exon

WP_011536543.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24760-24966:1:exon

SALA_RS16325
type: Gene
subclass of: SO_0000704
RO_0002162: 317655
locus tag: SALA_RS16325
so part of: sequence
location: 24963..25157
location: region:24963-25157:1
so has part: feature:24963-25157:1:exon
subclass of: SO_0000010

position:24963:1
position: 24963
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25157:1
position: 25157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24963-25157:1:exon

SALA_RS16325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 317655
locus tag: SALA_RS16325
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009802103.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MSGQRTVEPICVRVNDAARMIGVGRTKLYELISSGELETIKIGKATRITTASLHRLVERHRALN
SIO_010081: SALA_RS16325
subclass of: SO_0000673
so part of: SALA_RS16325
location: 24963..25157
location: region:24963-25157:1
so has part: feature:24963-25157:1:exon

WP_041384254.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24963-25157:1:exon

SALA_RS17250
type: Gene
subclass of: SO_0000704
RO_0002162: 317655
locus tag: SALA_RS17250
so part of: sequence
location: complement(25634..25951)
location: region:25634-25951:-1
so has part: feature:25634-25951:-1:exon
subclass of: SO_0000010

position:25634:-1
position: 25634
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25951:-1
position: 25951
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25634-25951:-1:exon

SALA_RS17250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 317655
locus tag: SALA_RS17250
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MALEAREPLAGLDGAFPAGGILAMILACGVAKRHLGGSFALSLSEHIATVDLDRLAKFIGFLTRLRERKQLGAAQADILAFAVTLQPKKEAPPRLSTFRNSPSPS
SIO_010081: SALA_RS17250
subclass of: SO_0000673
so part of: SALA_RS17250
location: complement(25634..25951)
location: region:25634-25951:-1
so has part: feature:25634-25951:-1:exon

WP_041384256.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25634-25951:-1:exon

SALA_RS16335
type: Gene
subclass of: SO_0000704
RO_0002162: 317655
locus tag: SALA_RS16335
old locus tag: Sala_3218
so part of: sequence
location: complement(26638..28125)
location: region:26638-28125:-1
so has part: feature:26638-28125:-1:exon
subclass of: SO_0000010

position:26638:-1
position: 26638
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28125:-1
position: 28125
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26638-28125:-1:exon

SALA_RS16335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 317655
locus tag: SALA_RS16335
old locus tag: Sala_3218
inference: COORDINATES: protein motif:HMM:NF012711.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: class I adenylate-forming enzyme family protein
translation: MEVRRISDALKVRAQHQADEIAHDDTRRQISFAEWDREVDEVAGGLAAAGLVPGDRVFLPISNFHAVEMAIAVFAVFRAGGIACPINTRLNPKEIAEYAALCEPRFCITDAPDRVRDLKLAACWHAEDMPRNLTALPDQASLDPGADAEILATSGTTGKIKGVVISHPDLMTGVTGYNMDRSRSTLNALPLTGSGGNIGIVMLPARGGATAITQPKFDPKGFLDLVREKRPNLVYLVPSMLRLVLDHPDAPDYDFSGVKYLMTGTAPLPHDSVKRAMDLWPHLRIRNSYGMSEGGVGVSTTSAEQVLKPGCVGKLPKHMQLRDEAGNVITTVGVVGEIYGWQKHPRRYWNDEQATADSFRGGWTKTGDLGFIDEDGDLIMAGRSKELIIRGGYNITPLEIETVLHLHPAVQQAAVVGIPHEILGEDIAAAVTLRPGKTAETEEILSFCREHLADNKVPRTLVIMDSLPLNPNGKILKKYLAEPLARAAEARRRAA
SIO_010081: SALA_RS16335
subclass of: SO_0000673
so part of: SALA_RS16335
location: complement(26638..28125)
location: region:26638-28125:-1
so has part: feature:26638-28125:-1:exon

WP_011536545.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26638-28125:-1:exon

SALA_RS16340
type: Gene
subclass of: SO_0000704
RO_0002162: 317655
locus tag: SALA_RS16340
so part of: sequence
location: 28202..>28543
location: region:28202-28543:1
so has part: feature:28202-28543:1:exon
subclass of: SO_0000010

position:28202:1
position: 28202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28202-28543:1:exon

SALA_RS16340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 317655
locus tag: SALA_RS16340
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004618811.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MaoC family dehydratase N-terminal domain-containing protein
translation: MANAKADIKQSDEWQKAVAYEITDADIERQRKLLGFDQAAKTREYITVATEDNIRNFAHGIGDDKPLYTDPGYAKKTRWGSVIAPGMMAGIINKPMLGDPVPDEIKALRKSLFK
SIO_010081: SALA_RS16340
subclass of: SO_0000673
so part of: SALA_RS16340
location: 28202..>28543
location: region:28202-28543:1
so has part: feature:28202-28543:1:exon

WP_041384257.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28202-28543:1:exon