Deinococcus ficus strain CC-FR2-10 plasmid pDFI2, complete sequence.
Bacteria; Deinococcota; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.
The complete genome sequence of Deinococcus ficus isolated from the rhizosphere of the Ficus religiosa L. in Taiwan
Submitted (01-MAY-2017) Institute of Molecular and Genomic Medicine, National Health Research Institutes, 35, Keyan Road, Zhunan Town, Miaoli County 350, Taiwan
REFSEQ INFORMATION: The reference sequence is identical to\nCP021083.1.\nBacteria and source DNA available from Lab. of Soil Environmental\nMicrobiology and Biochemistry.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. MAR-2006\nAssembly Name :: DFI1.0\nLong Assembly Name :: Deinococcus ficus CC-FR2-10 1.0\nGenome Coverage :: 18x\nSequencing Technology :: Sanger\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 00:26:31\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,050\nCDSs (total) :: 3,979\nGenes (coding) :: 3,952\nCDSs (with protein) :: 3,952\nGenes (RNA) :: 71\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 59\nncRNAs :: 3\nPseudo Genes (total) :: 27\nCDSs (without protein) :: 27\nPseudo Genes (ambiguous residues) :: 0 of 27\nPseudo Genes (frameshifted) :: 5 of 27\nPseudo Genes (incomplete) :: 22 of 27\nPseudo Genes (internal stop) :: 2 of 27\nPseudo Genes (multiple problems) :: 2 of 27\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_012629997.1
GO:0005506 - iron ion binding [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
iron-sulfur cluster repair di-iron protein
COORDINATES: similar to AA sequence:RefSeq:WP_017756246.1
COORDINATES: similar to AA sequence:RefSeq:WP_003330276.1
GO:0050304 - nitrous-oxide reductase activity [Evidence IEA]
GO:0019333 - denitrification pathway [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003332842.1
COORDINATES: protein motif:HMM:TIGR04247.1
GO:0071941 - nitrogen cycle metabolic process [Evidence IEA]
nitrous oxide reductase family maturation protein NosD
COORDINATES: similar to AA sequence:RefSeq:WP_003332844.1
COORDINATES: similar to AA sequence:RefSeq:WP_008880111.1
COORDINATES: protein motif:HMM:NF024515.2
COORDINATES: protein motif:HMM:NF012314.2
COORDINATES: similar to AA sequence:RefSeq:WP_019584735.1
COORDINATES: similar to AA sequence:RefSeq:WP_017871750.1
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: protein motif:HMM:TIGR00254.1
COORDINATES: similar to AA sequence:RefSeq:WP_013558332.1
COORDINATES: protein motif:HMM:NF012301.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:NF021458.2
COORDINATES: similar to AA sequence:RefSeq:WP_019586592.1
COORDINATES: protein motif:HMM:NF012706.2
glutathione ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011228608.1
COORDINATES: similar to AA sequence:RefSeq:WP_005586879.1
COORDINATES: similar to AA sequence:RefSeq:WP_019011918.1
COORDINATES: protein motif:HMM:NF014566.2
type II CAAX endopeptidase family protein
COORDINATES: protein motif:HMM:NF021886.2
COORDINATES: similar to AA sequence:RefSeq:WP_019938725.1
GO:0008853 - exodeoxyribonuclease III activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019588527.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: similar to AA sequence:RefSeq:WP_012695319.1
COORDINATES: similar to AA sequence:RefSeq:WP_019011868.1
COORDINATES: similar to AA sequence:RefSeq:WP_017871905.1
ribonucleotide-diphosphate reductase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_017871906.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
class 1b ribonucleoside-diphosphate reductase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_017871907.1
GO:0036211 - protein modification process [Evidence IEA]
class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_013703650.1
COORDINATES: protein motif:HMM:NF017457.2
COORDINATES: similar to AA sequence:RefSeq:WP_003971052.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013465.2
metal ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011529348.1
COORDINATES: protein motif:HMM:NF012401.2
COORDINATES: protein motif:HMM:NF012655.2
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF022517.2
COORDINATES: protein motif:HMM:NF024852.2
COORDINATES: similar to AA sequence:RefSeq:WP_019008040.1
COORDINATES: similar to AA sequence:RefSeq:WP_013595200.1
COORDINATES: similar to AA sequence:RefSeq:WP_011531128.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013557074.1
COORDINATES: similar to AA sequence:RefSeq:WP_019587478.1
GO:0016874 - ligase activity [Evidence IEA]
GO:0051235 - maintenance of location [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015235140.1
isoaspartyl peptidase/L-asparaginase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012695266.1
GO:0016787 - hydrolase activity [Evidence IEA]
GO:0044265 - cellular macromolecule catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008478828.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694289.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019011674.1
COORDINATES: similar to AA sequence:RefSeq:WP_010485377.1
COORDINATES: similar to AA sequence:RefSeq:WP_017870129.1
COORDINATES: similar to AA sequence:RefSeq:WP_019010559.1
GO:0008879 - glucose-1-phosphate thymidylyltransferase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
glucose-1-phosphate thymidylyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_014695575.1
COORDINATES: similar to AA sequence:RefSeq:WP_011526032.1
GO:0008767 - UDP-galactopyranose mutase activity [Evidence IEA]
GO:0009273 - peptidoglycan-based cell wall biogenesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020707323.1
COORDINATES: similar to AA sequence:RefSeq:WP_010889188.1
COORDINATES: similar to AA sequence:RefSeq:WP_017872006.1
sensor domain-containing diguanylate cyclase
CPBP family intramembrane metalloprotease
COORDINATES: protein motif:HMM:NF024248.2
winged helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF012791.2
COORDINATES: similar to AA sequence:RefSeq:WP_014682732.1
COORDINATES: similar to AA sequence:RefSeq:WP_013558295.1
COORDINATES: similar to AA sequence:RefSeq:WP_010994985.1
COORDINATES: similar to AA sequence:RefSeq:WP_019010621.1
COORDINATES: similar to AA sequence:RefSeq:WP_013613870.1
COORDINATES: similar to AA sequence:RefSeq:WP_014684496.1
COORDINATES: similar to AA sequence:RefSeq:WP_012693788.1
glutathionylspermidine synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012693789.1
COORDINATES: similar to AA sequence:RefSeq:WP_013178867.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0003955 - NAD(P)H dehydrogenase (quinone) activity [Evidence IEA]
bifunctional diguanylate cyclase/phosphodiesterase
COORDINATES: protein motif:HMM:NF039515.1
COORDINATES: similar to AA sequence:RefSeq:WP_010889149.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000311 - plastid large ribosomal subunit [Evidence IEA]
GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013555282.1
COORDINATES: protein motif:HMM:NF024583.2
COORDINATES: similar to AA sequence:RefSeq:WP_019588594.1
COORDINATES: similar to AA sequence:RefSeq:WP_013555747.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019314.2
COORDINATES: similar to AA sequence:RefSeq:WP_011531402.1
COORDINATES: similar to AA sequence:RefSeq:WP_015247217.1
GO:0009116 - nucleoside metabolic process [Evidence IEA]
phosphoribosyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010201238.1
GO:0004096 - catalase activity [Evidence IEA]; GO:0004601 - peroxidase activity [Evidence IEA]
GO:0006979 - response to oxidative stress [Evidence IEA]
COORDINATES: protein motif:HMM:NF017081.2
GO:0009975 - cyclase activity [Evidence IEA]
GO:0009966 - regulation of signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019012488.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018602817.1
COORDINATES: similar to AA sequence:RefSeq:WP_017870737.1
COORDINATES: similar to AA sequence:RefSeq:WP_013476447.1
rhodanese-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019011811.1
COORDINATES: similar to AA sequence:RefSeq:WP_019011810.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017870387.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
DNA polymerase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007464569.1
COORDINATES: similar to AA sequence:RefSeq:WP_003348056.1
GO:0003824 - catalytic activity [Evidence IEA]
TIGR04053 family radical SAM/SPASM domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015775996.1
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010889272.1
GO:0016829 - lyase activity [Evidence IEA]
CbiX/SirB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017871825.1
GO:0004851 - uroporphyrin-III C-methyltransferase activity [Evidence IEA]
GO:0019354 - siroheme biosynthetic process [Evidence IEA]
uroporphyrinogen-III C-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_019585866.1
COORDINATES: similar to AA sequence:RefSeq:WP_011530538.1
GO:0004020 - adenylylsulfate kinase activity [Evidence IEA]
GO:0006790 - sulfur compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014685124.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0004604 - phosphoadenylyl-sulfate reductase (thioredoxin) activity [Evidence IEA]
GO:0019379 - sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017871820.1
GO:0004781 - sulfate adenylyltransferase (ATP) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012693590.1
GO:0051060 - pullulanase activity [Evidence IEA]
GO:0051678 - pullulan catabolic process [Evidence IEA]; GO:0005983 - starch catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014695417.1
COORDINATES: protein motif:HMM:NF013731.2
COORDINATES: similar to AA sequence:RefSeq:WP_013623123.1
COORDINATES: protein motif:HMM:NF012245.2
COORDINATES: similar to AA sequence:RefSeq:WP_014695422.1
COORDINATES: similar to AA sequence:RefSeq:WP_017871802.1
COORDINATES: similar to AA sequence:RefSeq:WP_010889616.1
COORDINATES: similar to AA sequence:RefSeq:WP_010886755.1
COORDINATES: similar to AA sequence:RefSeq:WP_017869477.1
GO:0047475 - phenylacetate-CoA ligase activity [Evidence IEA]
GO:0010124 - phenylacetate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011525819.1
iron-siderophore ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012694343.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014695474.1
COORDINATES: similar to AA sequence:RefSeq:WP_019008445.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586176.1
COORDINATES: similar to AA sequence:RefSeq:WP_011525814.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586174.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586258.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695143.1
branched-chain amino acid ABC transporter ATP-binding protein/permease
COORDINATES: similar to AA sequence:RefSeq:WP_019586256.1
branched-chain amino acid ABC transporter permease
COORDINATES: protein motif:HMM:NF018933.2
COORDINATES: similar to AA sequence:RefSeq:WP_010889261.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011525580.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_020718814.1
COORDINATES: protein motif:HMM:NF012744.2
COORDINATES: protein motif:HMM:NF016800.2
COORDINATES: protein motif:HMM:NF022077.2
COORDINATES: similar to AA sequence:RefSeq:WP_017869167.1
COORDINATES: protein motif:HMM:NF012360.2
COORDINATES: protein motif:HMM:NF013672.2
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
polysaccharide deacetylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611488.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024736.2
COORDINATES: protein motif:HMM:NF012626.2
COORDINATES: similar to AA sequence:RefSeq:WP_020671942.1
COORDINATES: similar to AA sequence:RefSeq:WP_013558145.1
COORDINATES: similar to AA sequence:RefSeq:WP_012692434.1
COORDINATES: similar to AA sequence:RefSeq:WP_011531150.1
COORDINATES: similar to AA sequence:RefSeq:WP_012692436.1
COORDINATES: similar to AA sequence:RefSeq:WP_011531148.1
COORDINATES: similar to AA sequence:RefSeq:WP_011529949.1
COORDINATES: similar to AA sequence:RefSeq:WP_011530357.1
COORDINATES: similar to AA sequence:RefSeq:WP_017871062.1
COORDINATES: protein motif:HMM:NF018604.2
COORDINATES: similar to AA sequence:RefSeq:WP_013623059.1
COORDINATES: similar to AA sequence:RefSeq:WP_017871349.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694296.1
COORDINATES: similar to AA sequence:RefSeq:WP_014684623.1
gamma-glutamyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017869492.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019008464.1
COORDINATES: similar to AA sequence:RefSeq:WP_012873339.1
GO:0016811 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019587071.1
COORDINATES: similar to AA sequence:RefSeq:WP_006403680.1
GO:0018802 - 2,4-dihydroxyhept-2-ene-1,7-dioate aldolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019008462.1
GO:0018817 - 2-oxo-hept-3-ene-1,7-dioate hydratase activity [Evidence IEA]
2-oxo-hepta-3-ene-1,7-dioic acid hydratase
COORDINATES: similar to AA sequence:RefSeq:WP_017869504.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695132.1
GO:0008687 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase activity [Evidence IEA]
3,4-dihydroxyphenylacetate 2,3-dioxygenase
COORDINATES: similar to AA sequence:RefSeq:WP_013623237.1
4-hydroxyphenylacetate 3-monooxygenase, oxygenase component
COORDINATES: similar to AA sequence:RefSeq:WP_019010294.1
COORDINATES: similar to AA sequence:RefSeq:WP_011525640.1
GO:0018480 - 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase activity [Evidence IEA]
GO:1901023 - 4-hydroxyphenylacetate catabolic process [Evidence IEA]
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_011525642.1
COORDINATES: similar to AA sequence:RefSeq:WP_011525643.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012695137.1
COORDINATES: similar to AA sequence:RefSeq:WP_019584915.1
COORDINATES: similar to AA sequence:RefSeq:WP_013558096.1
COORDINATES: similar to AA sequence:RefSeq:WP_006301439.1
COORDINATES: similar to AA sequence:RefSeq:WP_013558098.1
GO:0008761 - UDP-N-acetylglucosamine 2-epimerase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)
COORDINATES: similar to AA sequence:RefSeq:WP_013558099.1
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013622921.1
COORDINATES: similar to AA sequence:RefSeq:WP_013704676.1
GO:0031071 - cysteine desulfurase activity [Evidence IEA]
GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017869487.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623248.1
COORDINATES: similar to AA sequence:RefSeq:WP_013704360.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013555557.1
COORDINATES: similar to AA sequence:RefSeq:WP_013622901.1
COORDINATES: similar to AA sequence:RefSeq:WP_015234022.1
GO:0016783 - sulfurtransferase activity [Evidence IEA]
formate dehydrogenase accessory sulfurtransferase FdhD
COORDINATES: protein motif:HMM:NF019464.2
COORDINATES: similar to AA sequence:RefSeq:WP_019009473.1
GO:0009326 - formate dehydrogenase complex [Evidence IEA]
GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IEA]
GO:0015942 - formate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016454722.1
COORDINATES: similar to AA sequence:RefSeq:WP_011526049.1
BadF/BadG/BcrA/BcrD ATPase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012695154.1
COORDINATES: similar to AA sequence:RefSeq:WP_018466753.1
COORDINATES: similar to AA sequence:RefSeq:WP_014695467.1
COORDINATES: similar to AA sequence:RefSeq:WP_019008433.1
COORDINATES: similar to AA sequence:RefSeq:WP_013013925.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695157.1
COORDINATES: similar to AA sequence:RefSeq:WP_011526053.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695159.1
COORDINATES: similar to AA sequence:RefSeq:WP_006144062.1
N-acetylmuramic acid 6-phosphate etherase
COORDINATES: similar to AA sequence:RefSeq:WP_017871726.1
COORDINATES: similar to AA sequence:RefSeq:WP_010889278.1
bifunctional metallophosphatase/5'-nucleotidase
COORDINATES: similar to AA sequence:RefSeq:WP_014695758.1
COORDINATES: similar to AA sequence:RefSeq:WP_011525835.1
GO:0015074 - DNA integration [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014684799.1
COORDINATES: similar to AA sequence:RefSeq:WP_018132640.1
GO:0004587 - ornithine-oxo-acid transaminase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014683934.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
GO:0098662 - inorganic cation transmembrane transport [Evidence IEA]; GO:1902600 - proton transmembrane transport [Evidence IEA]
monovalent cation/H(+) antiporter subunit G
COORDINATES: similar to AA sequence:RefSeq:WP_017869043.1
GO:0015075 - monoatomic ion transmembrane transporter activity [Evidence IEA]
GO:0034220 - monoatomic ion transmembrane transport [Evidence IEA]
monovalent cation/H+ antiporter complex subunit F
COORDINATES: similar to AA sequence:RefSeq:WP_014683936.1
COORDINATES: similar to AA sequence:RefSeq:WP_017869045.1
proton-conducting transporter membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_019587789.1
COORDINATES: similar to AA sequence:RefSeq:WP_010887526.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683940.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695147.1
COORDINATES: protein motif:HMM:NF015377.2
LysM peptidoglycan-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011531194.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695346.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695283.1
GO:0004833 - tryptophan 2,3-dioxygenase activity [Evidence IEA]
GO:0019441 - tryptophan catabolic process to kynurenine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012695284.1
GO:0030429 - kynureninase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013613890.1
metal-sensitive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017870738.1
COORDINATES: protein motif:HMM:NF020123.2
COORDINATES: similar to AA sequence:RefSeq:WP_012693695.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_014683442.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0015412 - ABC-type molybdate transporter activity [Evidence IEA]; GO:0030973 - molybdate ion binding [Evidence IEA]
GO:0015689 - molybdate ion transport [Evidence IEA]
molybdate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017871762.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017871977.1
nucleoside-diphosphate sugar epimerase/dehydratase
COORDINATES: similar to AA sequence:RefSeq:WP_012694181.1
BMP family ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012695191.1
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_012695192.1
COORDINATES: protein motif:HMM:NF013180.2
COORDINATES: similar to AA sequence:RefSeq:WP_012695148.1
COORDINATES: similar to AA sequence:RefSeq:WP_012047108.1
COORDINATES: similar to AA sequence:RefSeq:WP_012693558.1
COORDINATES: similar to AA sequence:RefSeq:WP_019011538.1
COORDINATES: similar to AA sequence:RefSeq:WP_012693556.1
COORDINATES: similar to AA sequence:RefSeq:WP_011529943.1
COORDINATES: similar to AA sequence:RefSeq:WP_012693554.1
COORDINATES: similar to AA sequence:RefSeq:WP_017871153.1
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: protein motif:HMM:NF039463.1
COORDINATES: protein motif:HMM:NF013646.2
COORDINATES: similar to AA sequence:RefSeq:WP_014685034.1
COORDINATES: similar to AA sequence:RefSeq:WP_013555494.1
COORDINATES: similar to AA sequence:RefSeq:WP_012693917.1
COORDINATES: similar to AA sequence:RefSeq:WP_011526080.1
GO:0004335 - galactokinase activity [Evidence IEA]
GO:0006012 - galactose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015234263.1
GO:0008108 - UDP-glucose:hexose-1-phosphate uridylyltransferase activity [Evidence IEA]
galactose-1-phosphate uridylyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_019586652.1
COORDINATES: similar to AA sequence:RefSeq:WP_013555614.1
COORDINATES: similar to AA sequence:RefSeq:WP_011525848.1
COORDINATES: similar to AA sequence:RefSeq:WP_011525847.1
COORDINATES: similar to AA sequence:RefSeq:WP_012692187.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695364.1
COORDINATES: similar to AA sequence:RefSeq:WP_019008417.1
COORDINATES: similar to AA sequence:RefSeq:WP_017869450.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010887998.1
COORDINATES: similar to AA sequence:RefSeq:WP_019011914.1
MetQ/NlpA family ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013570547.1
COORDINATES: similar to AA sequence:RefSeq:WP_012693568.1
COORDINATES: similar to AA sequence:RefSeq:WP_013557685.1
GO:0003858 - 3-hydroxybutyrate dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012695248.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695249.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695250.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694293.1
COORDINATES: similar to AA sequence:RefSeq:WP_013458617.1
enoyl-CoA hydratase/isomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019588338.1
COORDINATES: similar to AA sequence:RefSeq:WP_011525775.1
COORDINATES: similar to AA sequence:RefSeq:WP_014686729.1
GO:0004113 - 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity [Evidence IEA]; GO:0051731 - polynucleotide 5'-hydroxyl-kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019011181.1
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014686727.1
COORDINATES: similar to AA sequence:RefSeq:WP_014686726.1
GO:0008173 - RNA methyltransferase activity [Evidence IEA]
3' terminal RNA ribose 2'-O-methyltransferase Hen1
COORDINATES: similar to AA sequence:RefSeq:WP_014686301.1
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019586203.1
Members of this family of hydrolases with an active site Cys residue belong to MEROPS family C26; Derived by automated computational analysis using gene prediction method: Protein Homology.
gamma-glutamyl-gamma-aminobutyrate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019008439.1
COORDINATES: similar to AA sequence:RefSeq:WP_017871465.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0015415 - ATPase-coupled phosphate ion transmembrane transporter activity [Evidence IEA]
phosphate ABC transporter ATP-binding protein PstB
COORDINATES: similar to AA sequence:RefSeq:WP_014684564.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015415 - ATPase-coupled phosphate ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013557456.1
phosphate ABC transporter permease subunit PstC
COORDINATES: similar to AA sequence:RefSeq:WP_019010148.1
GO:0015415 - ATPase-coupled phosphate ion transmembrane transporter activity [Evidence IEA]; GO:0042301 - phosphate ion binding [Evidence IEA]
phosphate ABC transporter substrate-binding protein PstS
COORDINATES: similar to AA sequence:RefSeq:WP_015189246.1
GO:0047343 - glucose-1-phosphate cytidylyltransferase activity [Evidence IEA]
glucose-1-phosphate cytidylyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_013555335.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013555334.1
COORDINATES: similar to AA sequence:RefSeq:WP_009555133.1
GO:0008830 - dTDP-4-dehydrorhamnose 3,5-epimerase activity [Evidence IEA]
GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015120236.1
COORDINATES: protein motif:HMM:NF024120.2
right-handed parallel beta-helix repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008209681.1
COORDINATES: protein motif:HMM:TIGR01536.1
GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0006529 - asparagine biosynthetic process [Evidence IEA]
asparagine synthase (glutamine-hydrolyzing)
COORDINATES: protein motif:HMM:NF024831.2
COORDINATES: similar to AA sequence:RefSeq:WP_013555324.1
UDP-glucose/GDP-mannose dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018639776.1
COORDINATES: similar to AA sequence:RefSeq:WP_011525899.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0032508 - DNA duplex unwinding [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
COORDINATES: protein motif:HMM:NF024770.2
substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF024824.2
COORDINATES: protein motif:HMM:NF013793.2
CpsD/CapB family tyrosine-protein kinase
COORDINATES: similar to AA sequence:RefSeq:WP_019551210.1
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: similar to AA sequence:RefSeq:WP_012694703.1
COORDINATES: protein motif:HMM:NF013884.2
COORDINATES: similar to AA sequence:RefSeq:WP_013623066.1
COORDINATES: protein motif:HMM:NF025054.2
COORDINATES: protein motif:HMM:NF024850.2
COORDINATES: similar to AA sequence:RefSeq:WP_018972803.1
COORDINATES: similar to AA sequence:RefSeq:WP_017249500.1
COORDINATES: similar to AA sequence:RefSeq:WP_010469716.1