Deinococcus ficus strain CC-FR2-10 plasmid pDFI1, complete sequence.
Bacteria; Deinococcota; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.
The complete genome sequence of Deinococcus ficus isolated from the rhizosphere of the Ficus religiosa L. in Taiwan
Submitted (01-MAY-2017) Institute of Molecular and Genomic Medicine, National Health Research Institutes, 35, Keyan Road, Zhunan Town, Miaoli County 350, Taiwan
REFSEQ INFORMATION: The reference sequence is identical to\nCP021082.1.\nBacteria and source DNA available from Lab. of Soil Environmental\nMicrobiology and Biochemistry.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. MAR-2006\nAssembly Name :: DFI1.0\nLong Assembly Name :: Deinococcus ficus CC-FR2-10 1.0\nGenome Coverage :: 18x\nSequencing Technology :: Sanger\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 00:26:31\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,050\nCDSs (total) :: 3,979\nGenes (coding) :: 3,952\nCDSs (with protein) :: 3,952\nGenes (RNA) :: 71\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 59\nncRNAs :: 3\nPseudo Genes (total) :: 27\nCDSs (without protein) :: 27\nPseudo Genes (ambiguous residues) :: 0 of 27\nPseudo Genes (frameshifted) :: 5 of 27\nPseudo Genes (incomplete) :: 22 of 27\nPseudo Genes (internal stop) :: 2 of 27\nPseudo Genes (multiple problems) :: 2 of 27\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_012695083.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014683566.1
COORDINATES: protein motif:HMM:NF025091.2
isocitrate lyase/phosphoenolpyruvate mutase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004388031.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_020636905.1
COORDINATES: protein motif:HMM:NF013434.2
COORDINATES: similar to AA sequence:RefSeq:WP_014674742.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019890715.1
COORDINATES: similar to AA sequence:RefSeq:WP_018681968.1
COORDINATES: protein motif:HMM:NF014686.2
COORDINATES: protein motif:HMM:NF013714.2
COORDINATES: protein motif:HMM:NF019310.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019012112.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012695206.1
COORDINATES: similar to AA sequence:RefSeq:WP_019585411.1
COORDINATES: similar to AA sequence:RefSeq:WP_014695443.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019585409.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011530653.1
COORDINATES: similar to AA sequence:RefSeq:WP_019585407.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_019585406.1
COORDINATES: similar to AA sequence:RefSeq:WP_019585405.1
COORDINATES: similar to AA sequence:RefSeq:WP_019585404.1
COORDINATES: similar to AA sequence:RefSeq:WP_019010153.1
COORDINATES: similar to AA sequence:RefSeq:WP_013555498.1
GO:0008430 - selenium binding [Evidence IEA]
selenium-binding protein SBP56-related protein
COORDINATES: similar to AA sequence:RefSeq:WP_013555499.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694806.1
COORDINATES: similar to AA sequence:RefSeq:WP_006941490.1
COORDINATES: similar to AA sequence:RefSeq:WP_011208673.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009333590.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0003955 - NAD(P)H dehydrogenase (quinone) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017872025.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017872024.1
COORDINATES: similar to AA sequence:RefSeq:WP_019053841.1
COORDINATES: similar to AA sequence:RefSeq:WP_017870714.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015231292.1
COORDINATES: similar to AA sequence:RefSeq:WP_009719299.1
COORDINATES: similar to AA sequence:RefSeq:WP_019588486.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_012694828.1
COORDINATES: similar to AA sequence:RefSeq:WP_019588499.1
GO:0016836 - hydro-lyase activity [Evidence IEA]
GO:0009234 - menaquinone biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019588498.1
COORDINATES: similar to AA sequence:RefSeq:WP_019588497.1
COORDINATES: similar to AA sequence:RefSeq:WP_013702841.1
COORDINATES: similar to AA sequence:RefSeq:WP_019011886.1
COORDINATES: similar to AA sequence:RefSeq:WP_019588494.1
serine hydrolase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019011884.1
COORDINATES: similar to AA sequence:RefSeq:WP_013458081.1
GO:0070573 - metallodipeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019011883.1
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012694899.1
homocysteine S-methyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011525852.1
COORDINATES: similar to AA sequence:RefSeq:WP_012693402.1
GO:0005507 - copper ion binding [Evidence IEA]
multicopper oxidase domain-containing protein
COORDINATES: protein motif:HMM:TIGR00254.1
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: protein motif:HMM:NF012311.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013557644.1
PAS domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_019010741.1
COORDINATES: similar to AA sequence:RefSeq:WP_019585202.1
COORDINATES: similar to AA sequence:RefSeq:WP_013555674.1
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: similar to AA sequence:RefSeq:WP_019585757.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611655.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: similar to AA sequence:RefSeq:WP_006225338.1
COORDINATES: similar to AA sequence:RefSeq:WP_012929837.1
COORDINATES: similar to AA sequence:RefSeq:WP_019010242.1
COORDINATES: similar to AA sequence:RefSeq:WP_012693447.1
COORDINATES: similar to AA sequence:RefSeq:WP_011355998.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586820.1
GO:0017013 - protein flavinylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019586819.1
COORDINATES: similar to AA sequence:RefSeq:WP_010888427.1
PepSY-associated TM helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013233799.1
carboxypeptidase-like regulatory domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019585751.1
COORDINATES: similar to AA sequence:RefSeq:WP_013614864.1
COORDINATES: similar to AA sequence:RefSeq:WP_013558525.1
COORDINATES: similar to AA sequence:RefSeq:WP_011526040.1
GO:0004370 - glycerol kinase activity [Evidence IEA]
GO:0006071 - glycerol metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013614867.1
glycerol-3-phosphate dehydrogenase/oxidase
COORDINATES: similar to AA sequence:RefSeq:WP_014695643.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013015053.1
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014695641.1
COORDINATES: similar to AA sequence:RefSeq:WP_013530185.1
COORDINATES: similar to AA sequence:RefSeq:WP_014695639.1
COORDINATES: similar to AA sequence:RefSeq:WP_011525752.1
COORDINATES: similar to AA sequence:RefSeq:WP_019010908.1
COORDINATES: similar to AA sequence:RefSeq:WP_011525733.1
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_011525731.1
GO:0031004 - potassium ion-transporting ATPase complex [Evidence IEA]
GO:0008556 - P-type potassium transmembrane transporter activity [Evidence IEA]
GO:0006813 - potassium ion transport [Evidence IEA]
potassium-transporting ATPase subunit KdpB
COORDINATES: protein motif:HMM:TIGR02115.1
COORDINATES: similar to AA sequence:RefSeq:WP_010883954.1
potassium-transporting ATPase subunit KdpA
COORDINATES: similar to AA sequence:RefSeq:WP_010883955.1
potassium-transporting ATPase subunit KdpC
COORDINATES: similar to AA sequence:RefSeq:WP_017870638.1
COORDINATES: similar to AA sequence:RefSeq:WP_010888893.1
COORDINATES: similar to AA sequence:RefSeq:WP_012628348.1
COORDINATES: protein motif:HMM:NF024583.2
COORDINATES: similar to AA sequence:RefSeq:WP_010886723.1
COORDINATES: similar to AA sequence:RefSeq:WP_012630592.1
COORDINATES: protein motif:HMM:NF012655.2
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF017206.2
GO:0003824 - catalytic activity [Evidence IEA]
NAD-dependent epimerase/dehydratase family protein
COORDINATES: protein motif:HMM:NF013775.2
COORDINATES: protein motif:HMM:NF015747.2
NAD(P)-binding domain-containing protein
COORDINATES: protein motif:HMM:NF025054.2
COORDINATES: protein motif:HMM:NF012371.2
COORDINATES: similar to AA sequence:RefSeq:WP_010934851.1
COORDINATES: similar to AA sequence:RefSeq:WP_019588516.1
COORDINATES: similar to AA sequence:RefSeq:WP_019587473.1
COORDINATES: similar to AA sequence:RefSeq:WP_013896467.1
COORDINATES: similar to AA sequence:RefSeq:WP_013152151.1
COORDINATES: similar to AA sequence:RefSeq:WP_012692258.1
COORDINATES: protein motif:HMM:NF012271.2
fibronectin type III domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019588710.1
COORDINATES: similar to AA sequence:RefSeq:WP_014685872.1
zinc-dependent alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017871276.1
guanitoxin biosynthesis heme-dependent pre-guanitoxin N-hydroxylase GntA
COORDINATES: similar to AA sequence:RefSeq:WP_010887258.1
COORDINATES: similar to AA sequence:RefSeq:WP_019922000.1
COORDINATES: protein motif:HMM:NF023580.2
COORDINATES: similar to AA sequence:RefSeq:WP_008783190.1
carboxypeptidase regulatory-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018351697.1
COORDINATES: similar to AA sequence:RefSeq:WP_015117419.1
COORDINATES: protein motif:HMM:NF025034.2
COORDINATES: similar to AA sequence:RefSeq:WP_017870260.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007439142.1
COORDINATES: similar to AA sequence:RefSeq:WP_020087987.1
COORDINATES: similar to AA sequence:RefSeq:WP_019966431.1
COORDINATES: similar to AA sequence:RefSeq:WP_019587655.1
COORDINATES: similar to AA sequence:RefSeq:WP_019587656.1
COORDINATES: similar to AA sequence:RefSeq:WP_019587657.1
COORDINATES: similar to AA sequence:RefSeq:WP_019587658.1
peptide ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019587659.1
COORDINATES: similar to AA sequence:RefSeq:WP_013707787.1
COORDINATES: similar to AA sequence:RefSeq:WP_019011519.1
GO:0008677 - 2-dehydropantoate 2-reductase activity [Evidence IEA]
GO:0015940 - pantothenate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019587662.1
COORDINATES: similar to AA sequence:RefSeq:WP_019587663.1
COORDINATES: similar to AA sequence:RefSeq:WP_019587664.1
COORDINATES: similar to AA sequence:RefSeq:WP_019587665.1
COORDINATES: similar to AA sequence:RefSeq:WP_013556054.1
COORDINATES: similar to AA sequence:RefSeq:WP_012693806.1
iron-siderophore ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF024248.2
COORDINATES: similar to AA sequence:RefSeq:WP_019588256.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612053.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF018933.2
COORDINATES: protein motif:HMM:TIGR02376.1
GO:0050421 - nitrite reductase (NO-forming) activity [Evidence IEA]
GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016329299.1
COORDINATES: protein motif:HMM:NF013457.2
GO:0015485 - cholesterol binding [Evidence IEA]
thiol-activated cytolysin family protein
COORDINATES: protein motif:HMM:NF024589.2
COORDINATES: similar to AA sequence:RefSeq:WP_013268430.1
COORDINATES: similar to AA sequence:RefSeq:WP_010889399.1
COORDINATES: similar to AA sequence:RefSeq:WP_018260478.1
COORDINATES: similar to AA sequence:RefSeq:WP_018351208.1
COORDINATES: similar to AA sequence:RefSeq:WP_010884059.1
COORDINATES: similar to AA sequence:RefSeq:WP_010884010.1
COORDINATES: protein motif:HMM:NF012791.2
COORDINATES: protein motif:HMM:NF033516.0
COORDINATES: protein motif:HMM:NF013677.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: protein motif:HMM:NF013879.2
COORDINATES: similar to AA sequence:RefSeq:WP_018041837.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611089.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016150.2
COORDINATES: protein motif:HMM:NF020037.2
COORDINATES: similar to AA sequence:RefSeq:WP_017871433.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694556.1
COORDINATES: similar to AA sequence:RefSeq:WP_020701232.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694554.1
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017878498.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012694552.1
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012694551.1
COORDINATES: protein motif:HMM:NF014717.2
COORDINATES: similar to AA sequence:RefSeq:WP_009246823.1
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: protein motif:HMM:NF025067.2
COORDINATES: similar to AA sequence:RefSeq:WP_011530226.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017871193.1
COORDINATES: similar to AA sequence:RefSeq:WP_017870136.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683829.1
COORDINATES: similar to AA sequence:RefSeq:WP_019585506.1
excalibur calcium-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014686750.1
COORDINATES: similar to AA sequence:RefSeq:WP_017870389.1
COORDINATES: similar to AA sequence:RefSeq:WP_018758089.1
COORDINATES: similar to AA sequence:RefSeq:WP_004000141.1
COORDINATES: protein motif:HMM:NF014566.2
CPBP family intramembrane metalloprotease
COORDINATES: similar to AA sequence:RefSeq:WP_015234110.1
FtsW/RodA/SpoVE family cell cycle protein
COORDINATES: similar to AA sequence:RefSeq:WP_017870478.1
COORDINATES: protein motif:HMM:NF033540.1
COORDINATES: similar to AA sequence:RefSeq:WP_013557698.1
COORDINATES: protein motif:HMM:NF014069.2
COORDINATES: similar to AA sequence:RefSeq:WP_019588324.1
COORDINATES: similar to AA sequence:RefSeq:WP_013555441.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0043022 - ribosome binding [Evidence IEA]
ribosome small subunit-dependent GTPase A
COORDINATES: similar to AA sequence:RefSeq:WP_013623076.1
COORDINATES: similar to AA sequence:RefSeq:WP_020164476.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586627.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586628.1
COORDINATES: similar to AA sequence:RefSeq:WP_014695702.1
COORDINATES: similar to AA sequence:RefSeq:WP_019012231.1
COORDINATES: similar to AA sequence:RefSeq:WP_012692957.1
GO:0018580 - nitronate monooxygenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF028151.2
carbohydrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013614892.1
COORDINATES: protein motif:HMM:NF013179.2
COORDINATES: similar to AA sequence:RefSeq:WP_012759905.1
COORDINATES: similar to AA sequence:RefSeq:WP_018514477.1
COORDINATES: protein motif:HMM:NF015368.2
COORDINATES: similar to AA sequence:RefSeq:WP_015235242.1
COORDINATES: similar to AA sequence:RefSeq:WP_017870537.1
COORDINATES: similar to AA sequence:RefSeq:WP_009490291.1
COORDINATES: protein motif:HMM:NF024905.2
COORDINATES: protein motif:HMM:NF013539.2
COORDINATES: similar to AA sequence:RefSeq:WP_010883950.1
COORDINATES: similar to AA sequence:RefSeq:WP_017869841.1
COORDINATES: similar to AA sequence:RefSeq:WP_010884061.1
COORDINATES: similar to AA sequence:RefSeq:WP_010888650.1
COORDINATES: similar to AA sequence:RefSeq:WP_012693797.1
branched-chain amino acid ABC transporter substrate-binding protein
BTAD domain-containing putative transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012792283.1
COORDINATES: protein motif:HMM:NF024854.2
COORDINATES: similar to AA sequence:RefSeq:WP_015447121.1
COORDINATES: similar to AA sequence:RefSeq:WP_014686103.1
COORDINATES: similar to AA sequence:RefSeq:WP_014686104.1
COORDINATES: similar to AA sequence:RefSeq:WP_014686105.1
COORDINATES: similar to AA sequence:RefSeq:WP_013615898.1
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_019586569.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586570.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013614109.1
COORDINATES: similar to AA sequence:RefSeq:WP_017871407.1
GO:0046872 - metal ion binding [Evidence IEA]
GO:0006801 - superoxide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006339665.1
GO:0003684 - damaged DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014695446.1
COORDINATES: similar to AA sequence:RefSeq:WP_013557735.1
COORDINATES: similar to AA sequence:RefSeq:WP_014695448.1
COORDINATES: similar to AA sequence:RefSeq:WP_014695449.1
COORDINATES: protein motif:HMM:NF039496.1
COORDINATES: similar to AA sequence:RefSeq:WP_013614805.1
COORDINATES: protein motif:HMM:NF016826.2
GO:0016861 - intramolecular oxidoreductase activity, interconverting aldoses and ketoses [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019010933.1
COORDINATES: similar to AA sequence:RefSeq:WP_013556029.1
COORDINATES: similar to AA sequence:RefSeq:WP_018464999.1
COORDINATES: similar to AA sequence:RefSeq:WP_019011978.1
COORDINATES: similar to AA sequence:RefSeq:WP_019011979.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012692.2
COORDINATES: protein motif:HMM:NF017760.2
COORDINATES: similar to AA sequence:RefSeq:WP_019008332.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694588.1
COORDINATES: similar to AA sequence:RefSeq:WP_017871552.1
COORDINATES: similar to AA sequence:RefSeq:WP_007617576.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694591.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694592.1
COORDINATES: protein motif:HMM:NF014625.2
COORDINATES: similar to AA sequence:RefSeq:WP_012694593.1
GO:0009975 - cyclase activity [Evidence IEA]
GO:0009966 - regulation of signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008480875.1
COORDINATES: similar to AA sequence:RefSeq:WP_019008258.1
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: protein motif:HMM:NF024864.2
COORDINATES: similar to AA sequence:RefSeq:WP_012693638.1
winged helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF024834.2
COORDINATES: protein motif:HMM:NF024753.2
PQQ-binding-like beta-propeller repeat protein
COORDINATES: nucleotide motif:Rfam:14.4:RF00023
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF016818.2
COORDINATES: similar to AA sequence:RefSeq:WP_011525818.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586101.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586100.1
COORDINATES: similar to AA sequence:RefSeq:WP_019875237.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695204.1
glycoside hydrolase family 2 TIM barrel-domain containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014695817.1
COORDINATES: similar to AA sequence:RefSeq:WP_010889262.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_019584669.1
COORDINATES: protein motif:HMM:NF021637.2
COORDINATES: protein motif:HMM:TIGR02452.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695227.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695228.1
COORDINATES: similar to AA sequence:RefSeq:WP_000381802.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623042.1
COORDINATES: similar to AA sequence:RefSeq:WP_015235548.1
COORDINATES: similar to AA sequence:RefSeq:WP_012692296.1
COORDINATES: protein motif:HMM:NF024816.2
LuxR C-terminal-related transcriptional regulator
COORDINATES: protein motif:HMM:TIGR02246.1
COORDINATES: protein motif:HMM:NF024273.2
COORDINATES: similar to AA sequence:RefSeq:WP_002627786.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611121.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694023.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019587841.1
Type 1 glutamine amidotransferase-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019588545.1
COORDINATES: similar to AA sequence:RefSeq:WP_012918050.1
COORDINATES: protein motif:HMM:NF023043.2
COORDINATES: similar to AA sequence:RefSeq:WP_019008854.1
COORDINATES: protein motif:HMM:NF024883.2
COORDINATES: similar to AA sequence:RefSeq:WP_014682927.1
COORDINATES: similar to AA sequence:RefSeq:WP_014682926.1
COORDINATES: similar to AA sequence:RefSeq:WP_019012132.1
COORDINATES: protein motif:HMM:NF040501.1
arsenic resistance N-acetyltransferase ArsN2
COORDINATES: similar to AA sequence:RefSeq:WP_019009354.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695138.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_012694526.1
COORDINATES: similar to AA sequence:RefSeq:WP_019010474.1
COORDINATES: similar to AA sequence:RefSeq:WP_019587229.1
COORDINATES: similar to AA sequence:RefSeq:WP_019587230.1
COORDINATES: protein motif:HMM:NF013502.2
COORDINATES: protein motif:HMM:NF033550.5
COORDINATES: similar to AA sequence:RefSeq:WP_076611488.1
COORDINATES: similar to AA sequence:RefSeq:WP_014650502.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695191.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695192.1
COORDINATES: similar to AA sequence:RefSeq:WP_010539742.1
COORDINATES: similar to AA sequence:RefSeq:WP_017314146.1
COORDINATES: similar to AA sequence:RefSeq:WP_017822375.1
COORDINATES: similar to AA sequence:RefSeq:WP_013188012.1
COORDINATES: similar to AA sequence:RefSeq:WP_014682874.1
COORDINATES: similar to AA sequence:RefSeq:WP_014682873.1
four-helix bundle copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014682724.1
COORDINATES: similar to AA sequence:RefSeq:WP_013615842.1
COORDINATES: protein motif:HMM:NF012514.2
COORDINATES: similar to AA sequence:RefSeq:WP_019009325.1
peptidoglycan DD-metalloendopeptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011525974.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694743.1
COORDINATES: similar to AA sequence:RefSeq:WP_019009394.1
COORDINATES: similar to AA sequence:RefSeq:WP_019009395.1
metal-sensitive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017871113.1
COORDINATES: similar to AA sequence:RefSeq:WP_013616022.1
COORDINATES: similar to AA sequence:RefSeq:WP_018467602.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013616026.1
COORDINATES: similar to AA sequence:RefSeq:WP_019009374.1
COORDINATES: similar to AA sequence:RefSeq:WP_017872030.1
COORDINATES: similar to AA sequence:RefSeq:WP_019012463.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695062.1
TIGR03885 family FMN-dependent LLM class oxidoreductase
COORDINATES: protein motif:HMM:NF023367.2
COORDINATES: protein motif:HMM:NF012356.2
COORDINATES: similar to AA sequence:RefSeq:WP_019092710.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF022747.2
COORDINATES: similar to AA sequence:RefSeq:WP_013492927.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694796.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694797.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694798.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694799.1
COORDINATES: similar to AA sequence:RefSeq:WP_010888492.1
organic hydroperoxide resistance protein
COORDINATES: similar to AA sequence:RefSeq:WP_019585591.1
COORDINATES: protein motif:HMM:TIGR03606.1
COORDINATES: similar to AA sequence:RefSeq:WP_014681184.1
COORDINATES: similar to AA sequence:RefSeq:WP_019011582.1
GO:0005576 - extracellular region [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013555489.1
COORDINATES: similar to AA sequence:RefSeq:WP_011564768.1
COORDINATES: similar to AA sequence:RefSeq:WP_014684028.1
COORDINATES: similar to AA sequence:RefSeq:WP_013477145.1
N-acetylmannosamine-6-phosphate 2-epimerase
COORDINATES: similar to AA sequence:RefSeq:WP_012694925.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694926.1
COORDINATES: similar to AA sequence:RefSeq:WP_008934758.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694928.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694929.1
FadR/GntR family transcriptional regulator
COORDINATES: protein motif:HMM:NF010730.0
COORDINATES: similar to AA sequence:RefSeq:WP_019009437.1
COORDINATES: similar to AA sequence:RefSeq:WP_015773393.1
GO:0006811 - monoatomic ion transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF013736.2
COORDINATES: similar to AA sequence:RefSeq:WP_015236067.1
GO:0016813 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines [Evidence IEA]
hydantoinase/carbamoylase family amidase
COORDINATES: similar to AA sequence:RefSeq:WP_019587685.1
GO:0008838 - diaminopropionate ammonia-lyase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019587686.1
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: similar to AA sequence:RefSeq:WP_014686458.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013557162.1
COORDINATES: similar to AA sequence:RefSeq:WP_020542441.1
COORDINATES: similar to AA sequence:RefSeq:WP_013614840.1
COORDINATES: similar to AA sequence:RefSeq:WP_010887439.1
COORDINATES: protein motif:HMM:NF024242.2
COORDINATES: similar to AA sequence:RefSeq:WP_014684199.1
COORDINATES: similar to AA sequence:RefSeq:WP_008202282.1
GO:0005267 - potassium channel activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015649.2
bacterial transcriptional activator domain-containing protein
COORDINATES: protein motif:HMM:NF019351.2
GO:0005507 - copper ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017870214.1
COORDINATES: protein motif:HMM:NF037015.2
COORDINATES: similar to AA sequence:RefSeq:WP_012694729.1
COORDINATES: similar to AA sequence:RefSeq:WP_019012320.1
COORDINATES: protein motif:HMM:NF037429.2
COORDINATES: protein motif:HMM:NF012792.2
COORDINATES: similar to AA sequence:RefSeq:WP_012694613.1
COORDINATES: similar to AA sequence:RefSeq:WP_013557721.1
COORDINATES: similar to AA sequence:RefSeq:WP_015847091.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694652.1
COORDINATES: similar to AA sequence:RefSeq:WP_005797231.1
COORDINATES: similar to AA sequence:RefSeq:WP_012935454.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694791.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694790.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694789.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694788.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694787.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694786.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694785.1
COORDINATES: similar to AA sequence:RefSeq:WP_014695503.1
COORDINATES: protein motif:HMM:NF015500.2
COORDINATES: similar to AA sequence:RefSeq:WP_019586146.1
COORDINATES: similar to AA sequence:RefSeq:WP_019009687.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019008386.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_019586142.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019586878.1
COORDINATES: similar to AA sequence:RefSeq:WP_012693820.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586880.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695343.1
COORDINATES: protein motif:HMM:NF017015.2
COORDINATES: similar to AA sequence:RefSeq:WP_013555292.1
COORDINATES: similar to AA sequence:RefSeq:WP_008162942.1
COORDINATES: similar to AA sequence:RefSeq:WP_019011159.1
COORDINATES: similar to AA sequence:RefSeq:WP_013623057.1
COORDINATES: similar to AA sequence:RefSeq:WP_019011173.1
COORDINATES: similar to AA sequence:RefSeq:WP_019011174.1
COORDINATES: protein motif:HMM:NF024627.2
right-handed parallel beta-helix repeat-containing protein
COORDINATES: protein motif:HMM:NF013508.2
COORDINATES: protein motif:HMM:TIGR01451.2
COORDINATES: protein motif:HMM:NF013180.2
COORDINATES: similar to AA sequence:RefSeq:WP_012695309.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683998.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695308.1
GO:0051116 - cobaltochelatase activity [Evidence IEA]
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019011459.1
COORDINATES: similar to AA sequence:RefSeq:WP_014685573.1
COORDINATES: similar to AA sequence:RefSeq:WP_015231257.1
COORDINATES: protein motif:HMM:NF024206.2
ankyrin repeat domain-containing protein
sensor domain-containing diguanylate cyclase
COORDINATES: similar to AA sequence:RefSeq:WP_013557358.1