Aliivibrio salmonicida LFI1238 plasmid pVSAL320, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Aliivibrio.
The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay
Submitted (26-JUN-2008) Hjerde E., Department of Molecular Biotechnology, University of Tromso, Breivika, 9037 Tromso, NORWAY
REFSEQ INFORMATION: The reference sequence is identical to\nFM178382.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/24/2022 02:13:44\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,501\nCDSs (total) :: 4,356\nGenes (coding) :: 4,112\nCDSs (with protein) :: 4,112\nGenes (RNA) :: 145\nrRNAs :: 13, 12, 12 (5S, 16S, 23S)\ncomplete rRNAs :: 13, 12, 12 (5S, 16S, 23S)\ntRNAs :: 104\nncRNAs :: 4\nPseudo Genes (total) :: 244\nCDSs (without protein) :: 244\nPseudo Genes (ambiguous residues) :: 0 of 244\nPseudo Genes (frameshifted) :: 101 of 244\nPseudo Genes (incomplete) :: 124 of 244\nPseudo Genes (internal stop) :: 38 of 244\nPseudo Genes (multiple problems) :: 17 of 244\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_017021999.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
leucine-rich repeat domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012548882.1
COORDINATES: similar to AA sequence:RefSeq:WP_006712136.1
COORDINATES: similar to AA sequence:RefSeq:WP_017023173.1
COORDINATES: similar to AA sequence:RefSeq:WP_011263968.1
COORDINATES: similar to AA sequence:RefSeq:WP_011263969.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_012548881.1
COORDINATES: similar to AA sequence:RefSeq:WP_012548905.1
COORDINATES: similar to AA sequence:RefSeq:WP_011263974.1
COORDINATES: similar to AA sequence:RefSeq:WP_011263975.1
COORDINATES: similar to AA sequence:RefSeq:WP_017449276.1
COORDINATES: protein motif:HMM:NF017333.2
COORDINATES: similar to AA sequence:RefSeq:WP_012548923.1
GO:0004803 - transposase activity [Evidence IEA]
IS91-like element ISVsa9 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_011263960.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: protein motif:HMM:NF013968.2
COORDINATES: similar to AA sequence:RefSeq:WP_012548929.1
COORDINATES: similar to AA sequence:RefSeq:WP_012552328.1
Tn3-like element ISVsa19 family transposase
COORDINATES: protein motif:HMM:NF016769.2
MbeD family mobilization/exclusion protein
COORDINATES: similar to AA sequence:RefSeq:WP_004399178.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004399177.1
COORDINATES: similar to AA sequence:RefSeq:WP_004399176.1
COORDINATES: similar to AA sequence:RefSeq:WP_004399175.1
COORDINATES: similar to AA sequence:RefSeq:WP_017099621.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.