Dolichospermum flos-aquae CCAP 1403/13F plasmid pAfl69, complete sequence.
Bacteria; Cyanobacteriota; Cyanophyceae; Nostocales; Aphanizomenonaceae; Dolichospermum.
Genome-Wide Identification of 5-Methylcytosine Sites in Bacterial Genomes By High-Throughput Sequencing of MspJI Restriction Fragments
Submitted (09-APR-2020) Genome Biology, NEB, 240 County Rd, Ipswich, MA 01938, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP051207.1.\nBacteria and source DNA available from CCAP 1403/13F.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 04-DEC-2016\nAssembly Method :: HGAP v. 2.3.0\nAssembly Name :: Afl_HGAP3_4\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 114.08x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/08/2022 06:20:56\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,992\nCDSs (total) :: 4,926\nGenes (coding) :: 4,706\nCDSs (with protein) :: 4,706\nGenes (RNA) :: 66\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 4\nPseudo Genes (total) :: 220\nCDSs (without protein) :: 220\nPseudo Genes (ambiguous residues) :: 0 of 220\nPseudo Genes (frameshifted) :: 57 of 220\nPseudo Genes (incomplete) :: 176 of 220\nPseudo Genes (internal stop) :: 20 of 220\nPseudo Genes (multiple problems) :: 25 of 220\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
United Kingdom: Windermere, Cumbria, England
COORDINATES: similar to AA sequence:RefSeq:WP_006634627.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_015141250.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217692.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015217891.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_015217864.1
COORDINATES: similar to AA sequence:RefSeq:WP_016860180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_011316409.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948733.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016948731.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217647.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217646.1
COORDINATES: protein motif:HMM:NF033592.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016953752.1
COORDINATES: similar to AA sequence:RefSeq:WP_016953753.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017655420.1
COORDINATES: similar to AA sequence:RefSeq:WP_010469616.1
GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015081665.1
COORDINATES: similar to AA sequence:RefSeq:WP_015081666.1
GO:0015074 - DNA integration [Evidence IEA]
phage integrase N-terminal SAM-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015081667.1
COORDINATES: similar to AA sequence:RefSeq:WP_010994801.1
COORDINATES: similar to AA sequence:RefSeq:WP_006277080.1
COORDINATES: similar to AA sequence:RefSeq:WP_006277079.1
COORDINATES: protein motif:HMM:NF014442.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006194240.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948777.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_016948776.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016953645.1
COORDINATES: similar to AA sequence:RefSeq:WP_012409727.1
COORDINATES: similar to AA sequence:RefSeq:WP_015364239.1
COORDINATES: similar to AA sequence:RefSeq:WP_006198155.1
COORDINATES: similar to AA sequence:RefSeq:WP_006615904.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_016873711.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017317751.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948717.1
COORDINATES: similar to AA sequence:RefSeq:WP_006195795.1
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017291643.1
COORDINATES: protein motif:HMM:NF040570.1
COORDINATES: similar to AA sequence:RefSeq:WP_006277377.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015186281.1
COORDINATES: similar to AA sequence:RefSeq:WP_015146392.1
COORDINATES: similar to AA sequence:RefSeq:WP_015129441.1
COORDINATES: similar to AA sequence:RefSeq:WP_007310610.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948769.1
GO:0004519 - endonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024991.2
COORDINATES: similar to AA sequence:RefSeq:WP_016948764.1
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013192793.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017743716.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217368.1
COORDINATES: similar to AA sequence:RefSeq:WP_009456975.1
COORDINATES: protein motif:HMM:NF037096.2