Borrelia turicatae 91E135 isolate Oz1 plasmid lpU43, complete sequence.
Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borrelia.
Reassembled and rearranged: the organization and evolution of antigen-encoding plasmids in two relapsing fever Borrelia species
Submitted (27-JUL-2016) Microbiology and Molecular Genetics, University of California Irvine, 843 Health Sciences Rd, Irvine, CA 92697, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP019369.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: PacBio HGAP v. 1; Celera Assembler v. 7.0\nGenome Coverage :: 32-100X\nSequencing Technology :: 454; IonTorrent; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 06:02:55\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,137\nCDSs (total) :: 1,099\nGenes (coding) :: 1,052\nCDSs (with protein) :: 1,052\nGenes (RNA) :: 38\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 47\nCDSs (without protein) :: 47\nPseudo Genes (ambiguous residues) :: 0 of 47\nPseudo Genes (frameshifted) :: 20 of 47\nPseudo Genes (incomplete) :: 32 of 47\nPseudo Genes (internal stop) :: 9 of 47\nPseudo Genes (multiple problems) :: 11 of 47\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012537773.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF033721.0
COORDINATES: similar to AA sequence:RefSeq:WP_012539475.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015633331.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015633325.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539547.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015633349.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539477.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013599.2
GO:0009279 - cell outer membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012539836.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539728.1
COORDINATES: similar to AA sequence:RefSeq:WP_010883757.1
COORDINATES: similar to AA sequence:RefSeq:WP_010257492.1
chromosome replication/partitioning protein
COORDINATES: similar to AA sequence:RefSeq:WP_015633345.1
COORDINATES: similar to AA sequence:RefSeq:WP_014696762.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633313.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633351.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015633340.1
COORDINATES: similar to AA sequence:RefSeq:WP_012537775.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539697.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633353.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633358.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633312.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539605.1
COORDINATES: protein motif:HMM:NF024429.2
COORDINATES: protein motif:HMM:NF018761.2
COORDINATES: similar to AA sequence:RefSeq:WP_011703797.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539476.1
COORDINATES: similar to AA sequence:RefSeq:WP_014696662.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012539659.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633359.1
COORDINATES: protein motif:HMM:NF014560.2
GO:0050797 - thymidylate synthase (FAD) activity [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012539667.1