Borrelia turicatae 91E135 isolate Oz1 plasmid lpE43, complete sequence.
Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borrelia.
Reassembled and rearranged: the organization and evolution of antigen-encoding plasmids in two relapsing fever Borrelia species
Submitted (09-JAN-2017) Microbiology and Molecular Genetics, University of California Irvine, 843 Health Sciences Rd, Irvine, CA 92697, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP019365.1.\nPositions 5948-8970 correspond to entire sequence of AF130429,\nwhich is of the silent site of vsp2 ('vspB') in this strain.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: PacBio HGAP v. 1; CLC Assembly Cell v. 8.5\nGenome Coverage :: 32-100X\nSequencing Technology :: 454; IonTorrent; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 06:02:55\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,137\nCDSs (total) :: 1,099\nGenes (coding) :: 1,052\nCDSs (with protein) :: 1,052\nGenes (RNA) :: 38\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 47\nCDSs (without protein) :: 47\nPseudo Genes (ambiguous residues) :: 0 of 47\nPseudo Genes (frameshifted) :: 20 of 47\nPseudo Genes (incomplete) :: 32 of 47\nPseudo Genes (internal stop) :: 9 of 47\nPseudo Genes (multiple problems) :: 11 of 47\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012539711.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012539728.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539223.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633352.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015633303.1
GO:0009279 - cell outer membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015633309.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633351.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013599.2
COORDINATES: similar to AA sequence:RefSeq:WP_015633325.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633355.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633313.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633347.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633312.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633353.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633349.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015633348.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633314.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539550.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539606.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633342.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633307.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633304.1
COORDINATES: protein motif:HMM:NF013114.2
COORDINATES: similar to AA sequence:RefSeq:WP_015633359.1
COORDINATES: similar to AA sequence:RefSeq:WP_012537773.1