Borrelia turicatae 91E135 isolate Oz1 plasmid lpB34, complete sequence.
Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borrelia.
Phylogenetic analysis of the spirochetes Borrelia parkeri and Borrelia turicatae and the potential for tick-borne relapsing fever in Florida
Extensive interplasmidic duplications change the virulence phenotype of the relapsing fever agent Borrelia turicatae
Immunologic and genetic analyses of VmpA of a neurotropic strain of Borrelia turicatae
Variability of a bacterial surface protein and disease expression in a possible mouse model of systemic Lyme borreliosis
Reassembled and rearranged: the organization and evolution of antigen-encoding plasmids in two relapsing fever Borrelia species
Submitted (11-MAY-2016) Microbiology and Molecular Genetics, University of California Irvine, 843 Health Sciences Rd, Irvine, CA 92697, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP019364.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Celera Assembler v. 7.0\nGenome Coverage :: 32-100X\nSequencing Technology :: 454; IonTorrent; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 06:02:55\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,137\nCDSs (total) :: 1,099\nGenes (coding) :: 1,052\nCDSs (with protein) :: 1,052\nGenes (RNA) :: 38\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 47\nCDSs (without protein) :: 47\nPseudo Genes (ambiguous residues) :: 0 of 47\nPseudo Genes (frameshifted) :: 20 of 47\nPseudo Genes (incomplete) :: 32 of 47\nPseudo Genes (internal stop) :: 9 of 47\nPseudo Genes (multiple problems) :: 11 of 47\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_004790732.1
GO:0070569 - uridylyltransferase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
UTP--glucose-1-phosphate uridylyltransferase
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012539343.1
GO:0003938 - IMP dehydrogenase activity [Evidence IEA]
GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012593116.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003922 - GMP synthase (glutamine-hydrolyzing) activity [Evidence IEA]; GO:0016462 - pyrophosphatase activity [Evidence IEA]
GO:0006177 - GMP biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015026992.1
GO:0008782 - adenosylhomocysteine nucleosidase activity [Evidence IEA]; GO:0008930 - methylthioadenosine nucleosidase activity [Evidence IEA]
GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA]; GO:0009164 - nucleoside catabolic process [Evidence IEA]; GO:0009116 - nucleoside metabolic process [Evidence IEA]
5'-methylthioadenosine/adenosylhomocysteine nucleosidase
COORDINATES: similar to AA sequence:RefSeq:WP_010258330.1
GO:0000034 - adenine deaminase activity [Evidence IEA]
GO:0006168 - adenine salvage [Evidence IEA]
COORDINATES: protein motif:HMM:NF033729.0
COORDINATES: similar to AA sequence:RefSeq:WP_010256195.1
COORDINATES: similar to AA sequence:RefSeq:WP_014687067.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539674.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539675.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539676.1
ankyrin repeat domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011187143.1
GO:0008982 - protein-N(PI)-phosphohistidine-sugar phosphotransferase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012539563.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890591.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539565.1
COORDINATES: similar to AA sequence:RefSeq:WP_011187120.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539680.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539568.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539569.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890586.1
COORDINATES: similar to AA sequence:RefSeq:WP_014687058.1
chromosome replication/partitioning protein
COORDINATES: similar to AA sequence:RefSeq:WP_012539685.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633358.1
GO:0009279 - cell outer membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015633353.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633325.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633312.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539605.1
COORDINATES: protein motif:HMM:NF024429.2