Borrelia turicatae 91E135 isolate Oz1 plasmid cpD, complete sequence.
Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borrelia.
Reassembled and rearranged: the organization and evolution of antigen-encoding plasmids in two relapsing fever Borrelia species
Submitted (09-JAN-2017) Microbiology and Molecular Genetics, University of California Irvine, 843 Health Sciences Rd, Irvine, CA 92697, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP019363.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: CLC Assembly Cell v. 8.5\nGenome Coverage :: 100X\nSequencing Technology :: 454; IonTorrent\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 06:02:55\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,137\nCDSs (total) :: 1,099\nGenes (coding) :: 1,052\nCDSs (with protein) :: 1,052\nGenes (RNA) :: 38\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 47\nCDSs (without protein) :: 47\nPseudo Genes (ambiguous residues) :: 0 of 47\nPseudo Genes (frameshifted) :: 20 of 47\nPseudo Genes (incomplete) :: 32 of 47\nPseudo Genes (internal stop) :: 9 of 47\nPseudo Genes (multiple problems) :: 11 of 47\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_014683069.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012539781.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683070.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683071.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539780.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539779.1
chromosome replication/partitioning protein