Borrelia turicatae 91E135 isolate Oz1 plasmid cpD, complete sequence.
type: Entry
definition: Borrelia turicatae 91E135 isolate Oz1 plasmid cpD, complete sequence.
sequence version: NZ_CP019363.1
sequence date: 2023-02-06
sequence: sequence
division: CON
label: NZ_CP019363.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02603508
keyword: RefSeq
source: Borrelia turicatae 91E135
organism: Borrelia turicatae 91E135
taxonomy: Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borrelia.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP019363.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: CLC Assembly Cell v. 8.5\nGenome Coverage :: 100X\nSequencing Technology :: 454; IonTorrent\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 06:02:55\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,137\nCDSs (total) :: 1,099\nGenes (coding) :: 1,052\nCDSs (with protein) :: 1,052\nGenes (RNA) :: 38\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 47\nCDSs (without protein) :: 47\nPseudo Genes (ambiguous residues) :: 0 of 47\nPseudo Genes (frameshifted) :: 20 of 47\nPseudo Genes (incomplete) :: 32 of 47\nPseudo Genes (internal stop) :: 9 of 47\nPseudo Genes (multiple problems) :: 11 of 47\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 5106
topology: circular
so has quality: SO_0000988
location: 1..5106
location: region:1-5106:1
RO_0002162: 314724

NZ_CP019363
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02603508
type: BioSample
SIO_000068: biosample

1
title: Reassembled and rearranged: the organization and evolution of antigen-encoding plasmids in two relapsing fever Borrelia species
author: Barbour, A.G.
author: Dai, Q.
author: Miller, S.C.
author: Porcella, S.F.
author: Schwan, T.G.
author: Lopez, J.E.
journal: Unpublished

2
title: Direct Submission
author: Barbour, A.G.
author: Dai, Q.
author: Miller, S.C.
author: Porcella, S.F.
author: Schwan, T.G.
author: Lopez, J.E.
journal: Submitted (09-JAN-2017) Microbiology and Molecular Genetics, University of California Irvine, 843 Health Sciences Rd, Irvine, CA 92697, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5106:1
position: 5106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5106:1:source
so part of: sequence
organism: Borrelia turicatae 91E135
mol type: genomic DNA
strain: 91E135
isolate: Oz1
isolation source: Ornithodoros turicata
lab host: Mus musculus
plasmid: cpD
country: USA:TX,Crockett County
altitude: 900 m
collection date: 1991
collected by: Texas Department of Public Health

314724
type: Taxonomy
SIO_000068: taxonomy

BT0_RS04545
type: Gene
subclass of: SO_0000704
RO_0002162: 314724
locus tag: BT0_RS04545
old locus tag: BT0_D01
so part of: sequence
location: 280..915
location: region:280-915:1
so has part: feature:280-915:1:exon
subclass of: SO_0000010

position:280:1
position: 280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:915:1
position: 915
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:280-915:1:exon

BT0_RS04545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 314724
locus tag: BT0_RS04545
old locus tag: BT0_D01
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014683069.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MENIKQDNIQEKKLPMILNYDNYMTEGNRETFFGNSQYEANYKAKVDGFIVDFFKIPRSLKSKYAINIKCLSSPDLPFGNIAMNCINTFKLIIDIINMQTGKTYDYDEFIARTETDKMLQYGAKLISALSRHFDESNGTNYSEGYYEWEKGWIDKKWIDYEPSALEIKKMQELNKKINQELNFRNKKRKISTLQTGQMRLLKAIKNLDHDF
SIO_010081: BT0_RS04545
subclass of: SO_0000673
so part of: BT0_RS04545
location: 280..915
location: region:280-915:1
so has part: feature:280-915:1:exon

WP_088895096.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:280-915:1:exon

BT0_RS04550
type: Gene
subclass of: SO_0000704
RO_0002162: 314724
locus tag: BT0_RS04550
old locus tag: BT0_D02
so part of: sequence
location: complement(2444..3031)
location: region:2444-3031:-1
so has part: feature:2444-3031:-1:exon
subclass of: SO_0000010

position:2444:-1
position: 2444
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3031:-1
position: 3031
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2444-3031:-1:exon

BT0_RS04550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 314724
locus tag: BT0_RS04550
old locus tag: BT0_D02
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539781.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid maintenance protein
translation: MKNLNFFLYNNSKLKKNQVRLIKLISILKYLNKNKLGYNQQDILNLANFFLKKEGYAVIKMKTLQKDLGFLKKNNVIKTFIIRLGEYKGSKIKYMPKINAYQILKQILNSTEELLERTFNIIYKLSKQEKIKNKTEQKNRTKNSSVYNNINNNINNNINNKKKMRIKRDEQQQTVEKILGKYMLHKGKQQKTVKI
SIO_010081: BT0_RS04550
subclass of: SO_0000673
so part of: BT0_RS04550
location: complement(2444..3031)
location: region:2444-3031:-1
so has part: feature:2444-3031:-1:exon

WP_088895097.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2444-3031:-1:exon

BT0_RS04555
type: Gene
subclass of: SO_0000704
RO_0002162: 314724
locus tag: BT0_RS04555
old locus tag: BT0_D03
so part of: sequence
location: 3249..3479
location: region:3249-3479:1
so has part: feature:3249-3479:1:exon
subclass of: SO_0000010

position:3249:1
position: 3249
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3479:1
position: 3479
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3249-3479:1:exon

BT0_RS04555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 314724
locus tag: BT0_RS04555
old locus tag: BT0_D03
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014683070.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRITLNFLNSLKNLKEFSKEMGYSDSSYLSRYIKKNKIEGVISSKDLFFKKRELLLSEEAQNLIKGKLKKEWQKGS
SIO_010081: BT0_RS04555
subclass of: SO_0000673
so part of: BT0_RS04555
location: 3249..3479
location: region:3249-3479:1
so has part: feature:3249-3479:1:exon

WP_088895098.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3249-3479:1:exon

BT0_RS04560
type: Gene
subclass of: SO_0000704
RO_0002162: 314724
locus tag: BT0_RS04560
old locus tag: BT0_D04
so part of: sequence
location: 3482..3745
location: region:3482-3745:1
so has part: feature:3482-3745:1:exon
subclass of: SO_0000010

position:3482:1
position: 3482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3745:1
position: 3745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3482-3745:1:exon

BT0_RS04560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 314724
locus tag: BT0_RS04560
old locus tag: BT0_D04
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014683071.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAETTDLKKFFIEYEGKKYYTPLFLAKINNISYFTIKNKIKKLNISIKAKDIGVVNSLSEELLIAEDNLDKLFYDKRFKCLDSRGMR
SIO_010081: BT0_RS04560
subclass of: SO_0000673
so part of: BT0_RS04560
location: 3482..3745
location: region:3482-3745:1
so has part: feature:3482-3745:1:exon

WP_236842859.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3482-3745:1:exon

BT0_RS04565
type: Gene
subclass of: SO_0000704
RO_0002162: 314724
locus tag: BT0_RS04565
old locus tag: BT0_D05
so part of: sequence
location: 3742..4509
location: region:3742-4509:1
so has part: feature:3742-4509:1:exon
subclass of: SO_0000010

position:3742:1
position: 3742
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4509:1
position: 4509
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3742-4509:1:exon

BT0_RS04565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 314724
locus tag: BT0_RS04565
old locus tag: BT0_D05
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539780.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MRDIITISSIKGGVGKSVTAIMLGFIFSKKYKTLLIDIDSQASVTSYFLPYFENKIDIREYNIYEVLKSKKSFMSIVHEITDNLHFAPSHIKLSQFSGENIIGQEYKLKTILTPYFDDYDYILIDTPPSVNKELINSLMIATKVVIPLPAELWAIESYDILKSKMQEIISAYQKQDFKSYYVIQTLYEENRKIKKEFFYSLQKLYQEYVPIKIHRSVAIQKMITYRLEPQESERYYNEYLKVAEVIEGVENIKTT
SIO_010081: BT0_RS04565
subclass of: SO_0000673
so part of: BT0_RS04565
location: 3742..4509
location: region:3742-4509:1
so has part: feature:3742-4509:1:exon

WP_088895100.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3742-4509:1:exon

BT0_RS04570
type: Gene
subclass of: SO_0000704
RO_0002162: 314724
locus tag: BT0_RS04570
old locus tag: BT0_D06
so part of: sequence
location: 4555..5070
location: region:4555-5070:1
so has part: feature:4555-5070:1:exon
subclass of: SO_0000010

position:4555:1
position: 4555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5070:1
position: 5070
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4555-5070:1:exon

BT0_RS04570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 314724
locus tag: BT0_RS04570
old locus tag: BT0_D06
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539779.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chromosome replication/partitioning protein
translation: MKMDILSTIKSRVGDVSQVEDVSGKEKARSRYRQLKEEIKARTLEEVVNKLELAKALYEIKKNKLYRFDGYDSFYEFCLDYKFSRTMIYRYIKIGAYLENENVSEQDVMQSSLNKIINDIRVKRTSSECKPVIVRFNLEDKEKQLILVKNKQKLEKFLLEYLLDNWESFMI
SIO_010081: BT0_RS04570
subclass of: SO_0000673
so part of: BT0_RS04570
location: 4555..5070
location: region:4555-5070:1
so has part: feature:4555-5070:1:exon

WP_088895101.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4555-5070:1:exon