Borrelia turicatae 91E135 isolate Oz1 plasmid cp31, complete sequence.
Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borrelia.
Reassembled and rearranged: the organization and evolution of antigen-encoding plasmids in two relapsing fever Borrelia species
Submitted (09-JAN-2017) Microbiology and Molecular Genetics, University of California Irvine, 843 Health Sciences Rd, Irvine, CA 92697, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP019362.1.\nHomologous to and largely syntenic with the cp32-type circular\nplasmids of B. burgdorferi B31; similar to and largely syntenic\nwith cp28 circular plasmid (CP014351) of B. hemsii HS1. The\nevidence for the topology was the circular permutation of sequences\nin large contigs.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: PacBio HGAP v. 1; CLC Assembly Cell v. 8.5\nGenome Coverage :: 32-100X\nSequencing Technology :: 454; IonTorrent; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 06:02:55\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,137\nCDSs (total) :: 1,099\nGenes (coding) :: 1,052\nCDSs (with protein) :: 1,052\nGenes (RNA) :: 38\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 47\nCDSs (without protein) :: 47\nPseudo Genes (ambiguous residues) :: 0 of 47\nPseudo Genes (frameshifted) :: 20 of 47\nPseudo Genes (incomplete) :: 32 of 47\nPseudo Genes (internal stop) :: 9 of 47\nPseudo Genes (multiple problems) :: 11 of 47\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_014023220.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF018761.2
COORDINATES: similar to AA sequence:RefSeq:WP_010259399.1
COORDINATES: protein motif:HMM:NF014983.2
COORDINATES: similar to AA sequence:RefSeq:WP_010256249.1
COORDINATES: similar to AA sequence:RefSeq:WP_010883814.1
COORDINATES: protein motif:HMM:NF024429.2
COORDINATES: protein motif:HMM:NF019051.2
COORDINATES: similar to AA sequence:RefSeq:WP_012539817.1
COORDINATES: protein motif:HMM:NF017382.2
COORDINATES: similar to AA sequence:RefSeq:WP_014683238.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683067.1
COORDINATES: similar to AA sequence:RefSeq:WP_014540912.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683065.1
COORDINATES: protein motif:HMM:NF017358.2
COORDINATES: similar to AA sequence:RefSeq:WP_012539823.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683062.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539760.1
COORDINATES: similar to AA sequence:RefSeq:WP_014486242.1
COORDINATES: similar to AA sequence:RefSeq:WP_010883841.1
DUF276 is restricted to Borreliella and related spirochetes; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012539763.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539764.1
COORDINATES: protein motif:HMM:TIGR01606.1
GO:0140911 - pore-forming activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017132.2
BlyB family putative holin accessory protein
COORDINATES: similar to AA sequence:RefSeq:WP_012539830.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539831.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539219.1
COORDINATES: similar to AA sequence:RefSeq:WP_014696774.1
COORDINATES: similar to AA sequence:RefSeq:WP_014696775.1
chromosome replication/partitioning protein
COORDINATES: similar to AA sequence:RefSeq:WP_012579272.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539540.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539836.1
COORDINATES: protein motif:HMM:NF021128.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:TIGR00621.2
COORDINATES: similar to AA sequence:RefSeq:WP_014696684.1
COORDINATES: protein motif:HMM:NF014177.2
GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0032775 - DNA methylation on adenine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012599365.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015633326.1
COORDINATES: protein motif:HMM:NF016524.2
COORDINATES: similar to AA sequence:RefSeq:WP_014486146.1
PBSX family phage terminase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_015633312.1