Pseudoalteromonas tunicata strain D2 chromosome 2, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.
Complete genome sequences of pooled genomic DNA from 10 marine bacteria using PacBio sequencing
Submitted (28-AUG-2018) School of Biotechnology and Biomolecular Sciences, University of New South Wales, High Street, Sydney 2052, Australia
REFSEQ INFORMATION: The reference sequence is identical to\nCP031962.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: PGAP v. 3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 168x\nSequencing Technology :: PacBio RS II\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/21/2023 02:10:01\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,359\nCDSs (total) :: 4,212\nGenes (coding) :: 4,178\nCDSs (with protein) :: 4,178\nGenes (RNA) :: 147\nrRNAs :: 11, 10, 10 (5S, 16S, 23S)\ncomplete rRNAs :: 11, 10, 10 (5S, 16S, 23S)\ntRNAs :: 112\nncRNAs :: 4\nPseudo Genes (total) :: 34\nCDSs (without protein) :: 34\nPseudo Genes (ambiguous residues) :: 0 of 34\nPseudo Genes (frameshifted) :: 16 of 34\nPseudo Genes (incomplete) :: 20 of 34\nPseudo Genes (internal stop) :: 9 of 34\nPseudo Genes (multiple problems) :: 10 of 34\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Pseudoalteromonas tunicata
COORDINATES: similar to AA sequence:RefSeq:WP_016706938.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013463801.1
COORDINATES: similar to AA sequence:RefSeq:WP_016953927.1
COORDINATES: similar to AA sequence:RefSeq:WP_011496300.1
COORDINATES: protein motif:HMM:NF037997.1
GO:0015114 - phosphate ion transmembrane transporter activity [Evidence IEA]; GO:0005436 - sodium:phosphate symporter activity [Evidence IEA]
GO:0035435 - phosphate ion transmembrane transport [Evidence IEA]; GO:0044341 - sodium-dependent phosphate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008609226.1
COORDINATES: protein motif:HMM:NF018924.2
COORDINATES: similar to AA sequence:RefSeq:WP_007643729.1
COORDINATES: similar to AA sequence:RefSeq:WP_006084697.1
GO:0004350 - glutamate-5-semialdehyde dehydrogenase activity [Evidence IEA]; GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0006561 - proline biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006004144.1
GO:0004349 - glutamate 5-kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011576839.1
COORDINATES: similar to AA sequence:RefSeq:WP_010558248.1
COORDINATES: protein motif:HMM:NF013548.2
COORDINATES: protein motif:HMM:NF020459.2
COORDINATES: similar to AA sequence:RefSeq:WP_007621401.1
COORDINATES: similar to AA sequence:RefSeq:WP_008171394.1
COORDINATES: similar to AA sequence:RefSeq:WP_008463923.1
COORDINATES: similar to AA sequence:RefSeq:WP_011329605.1
GO:0008997 - ribonuclease R activity [Evidence IEA]
GO:0006401 - RNA catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010369807.1
COORDINATES: similar to AA sequence:RefSeq:WP_010558598.1
COORDINATES: similar to AA sequence:RefSeq:WP_017003941.1
COORDINATES: similar to AA sequence:RefSeq:WP_011233303.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF013672.2
polysaccharide deacetylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010364618.1
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010380147.1
COORDINATES: similar to AA sequence:RefSeq:WP_010558941.1
COORDINATES: similar to AA sequence:RefSeq:WP_010362032.1
COORDINATES: similar to AA sequence:RefSeq:WP_007643374.1
COORDINATES: similar to AA sequence:RefSeq:WP_016957442.1
COORDINATES: similar to AA sequence:RefSeq:WP_014108519.1
COORDINATES: similar to AA sequence:RefSeq:WP_007639086.1
COORDINATES: similar to AA sequence:RefSeq:WP_008167016.1
COORDINATES: protein motif:HMM:NF020123.2
COORDINATES: similar to AA sequence:RefSeq:WP_013345884.1
COORDINATES: similar to AA sequence:RefSeq:WP_010559099.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004797 - thymidine kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012707.2
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011846868.1
COORDINATES: similar to AA sequence:RefSeq:WP_002958998.1
GO:0008988 - rRNA (adenine-N6-)-methyltransferase activity [Evidence IEA]
GO:0006364 - rRNA processing [Evidence IEA]
23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF
COORDINATES: similar to AA sequence:RefSeq:WP_010605200.1
COORDINATES: protein motif:HMM:NF012888.2
COORDINATES: similar to AA sequence:RefSeq:WP_010556768.1
COORDINATES: similar to AA sequence:RefSeq:WP_004588779.1
oxidoreductase-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010379229.1
COORDINATES: similar to AA sequence:RefSeq:WP_012277923.1
COORDINATES: similar to AA sequence:RefSeq:WP_019439991.1
heavy metal-binding domain-containing protein
COORDINATES: protein motif:HMM:TIGR04312.1
COORDINATES: protein motif:HMM:TIGR04052.1
metallo-mystery pair system four-Cys motif protein
COORDINATES: similar to AA sequence:RefSeq:WP_010561540.1
COORDINATES: protein motif:HMM:NF012792.2
COORDINATES: similar to AA sequence:RefSeq:WP_016957410.1
COORDINATES: similar to AA sequence:RefSeq:WP_009840320.1
COORDINATES: similar to AA sequence:RefSeq:WP_009840318.1
COORDINATES: similar to AA sequence:RefSeq:WP_009840555.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase
COORDINATES: similar to AA sequence:RefSeq:WP_005490576.1
COORDINATES: similar to AA sequence:RefSeq:WP_012587398.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009836371.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015059047.1
quaternary ammonium compound efflux SMR transporter QacE
COORDINATES: similar to AA sequence:RefSeq:WP_007104146.1
COORDINATES: similar to AA sequence:RefSeq:WP_007376442.1
COORDINATES: similar to AA sequence:RefSeq:WP_010381954.1
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_019029976.1
COORDINATES: similar to AA sequence:RefSeq:WP_017218959.1
COORDINATES: similar to AA sequence:RefSeq:WP_010381963.1
sigma-54 dependent transcriptional regulator
COORDINATES: protein motif:HMM:NF014567.2
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_017219903.1
COORDINATES: similar to AA sequence:RefSeq:WP_010557543.1
COORDINATES: protein motif:HMM:NF015431.2
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011496596.1
COORDINATES: similar to AA sequence:RefSeq:WP_011621253.1
PepSY-associated TM helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011638662.1
COORDINATES: similar to AA sequence:RefSeq:WP_013051783.1
COORDINATES: similar to AA sequence:RefSeq:WP_010362689.1
COORDINATES: similar to AA sequence:RefSeq:WP_013783895.1
COORDINATES: similar to AA sequence:RefSeq:WP_011717476.1
COORDINATES: similar to AA sequence:RefSeq:WP_010368687.1
GO:0047304 - 2-aminoethylphosphonate-pyruvate transaminase activity [Evidence IEA]
GO:0019700 - organic phosphonate catabolic process [Evidence IEA]
2-aminoethylphosphonate--pyruvate transaminase
COORDINATES: protein motif:HMM:NF024753.2
PQQ-binding-like beta-propeller repeat protein
COORDINATES: protein motif:HMM:NF013315.2
COORDINATES: similar to AA sequence:RefSeq:WP_010559574.1
GO:0005506 - iron ion binding [Evidence IEA]
GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005492713.1
GO:0016891 - endoribonuclease activity, producing 5'-phosphomonoesters [Evidence IEA]
GO:0042779 - tRNA 3'-trailer cleavage [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010381713.1
COORDINATES: similar to AA sequence:RefSeq:WP_012278364.1
flavohemoglobin expression-modulating QEGLA motif protein
COORDINATES: similar to AA sequence:RefSeq:WP_010606117.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004363 - glutathione synthase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0006750 - glutathione biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013754876.1
GO:0004830 - tryptophan-tRNA ligase activity [Evidence IEA]
GO:0006436 - tryptophanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010605152.1
COORDINATES: similar to AA sequence:RefSeq:WP_008302788.1
COORDINATES: protein motif:HMM:NF016296.2
LytTR family DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF019335.2
TonB-dependent receptor plug domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015431424.1
COORDINATES: similar to AA sequence:RefSeq:WP_012323469.1
GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0019752 - carboxylic acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010384223.1
COORDINATES: similar to AA sequence:RefSeq:WP_010384222.1
COORDINATES: similar to AA sequence:RefSeq:WP_010384221.1
COORDINATES: similar to AA sequence:RefSeq:WP_010384220.1
COORDINATES: similar to AA sequence:RefSeq:WP_010384219.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:1904680 - peptide transmembrane transporter activity [Evidence IEA]
GO:0015833 - peptide transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF003417.0
COORDINATES: similar to AA sequence:RefSeq:WP_010387356.1
COORDINATES: similar to AA sequence:RefSeq:WP_010387354.1
COORDINATES: similar to AA sequence:RefSeq:WP_008133625.1
COORDINATES: similar to AA sequence:RefSeq:WP_010385332.1
COORDINATES: similar to AA sequence:RefSeq:WP_010384051.1
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012323470.1
GO:0009975 - cyclase activity [Evidence IEA]
GO:0009966 - regulation of signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012323471.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007620550.1
COORDINATES: similar to AA sequence:RefSeq:WP_011626972.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_005502122.1
GO:0015333 - peptide:proton symporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016658.2
COORDINATES: protein motif:HMM:NF024917.2
COORDINATES: similar to AA sequence:RefSeq:WP_011070806.1
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
GO:0006662 - glycerol ether metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF016855.2
COORDINATES: similar to AA sequence:RefSeq:WP_010363901.1
COORDINATES: similar to AA sequence:RefSeq:WP_010559275.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010364614.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013180.2
COORDINATES: protein motif:HMM:NF024039.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011716991.1
COORDINATES: similar to AA sequence:RefSeq:WP_005500863.1
GO:0005576 - extracellular region [Evidence IEA]
GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF016847.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009840330.1
GO:0004803 - transposase activity [Evidence IEA]
IS110-like element ISPtu2 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_010362080.1
COORDINATES: similar to AA sequence:RefSeq:WP_011043548.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008113199.1
COORDINATES: protein motif:HMM:NF014068.2
nuclear transport factor 2 family protein
COORDINATES: protein motif:HMM:NF024242.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611969.1
programmed frameshift; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009837072.1
IS4-like element ISPtu1 family transposase
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: protein motif:HMM:NF017416.2
COORDINATES: similar to AA sequence:RefSeq:WP_008606321.1
COORDINATES: similar to AA sequence:RefSeq:WP_008606319.1
COORDINATES: similar to AA sequence:RefSeq:WP_008950429.1
COORDINATES: similar to AA sequence:RefSeq:WP_008606317.1
COORDINATES: similar to AA sequence:RefSeq:WP_010603880.1
GO:0004096 - catalase activity [Evidence IEA]; GO:0004601 - peroxidase activity [Evidence IEA]
GO:0006979 - response to oxidative stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008111407.1
COORDINATES: similar to AA sequence:RefSeq:WP_010560825.1
COORDINATES: similar to AA sequence:RefSeq:WP_010378767.1
phosphate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010361755.1
COORDINATES: similar to AA sequence:RefSeq:WP_006955651.1
GO:0015343 - siderophore-iron transmembrane transporter activity [Evidence IEA]
GO:0015891 - siderophore transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010362687.1
COORDINATES: similar to AA sequence:RefSeq:WP_012327196.1
GO:0020037 - heme binding [Evidence IEA]
ethylbenzene dehydrogenase-related protein
COORDINATES: protein motif:HMM:NF019237.2
COORDINATES: similar to AA sequence:RefSeq:WP_012327198.1
pre-peptidase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF012801.2
COORDINATES: similar to AA sequence:RefSeq:WP_006034244.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010379424.1
GO:0005575 - cellular_component [Evidence IEA]
GO:0003674 - molecular_function [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
YbhB/YbcL family Raf kinase inhibitor-like protein
COORDINATES: similar to AA sequence:RefSeq:WP_007623717.1
GO:0009306 - protein secretion [Evidence IEA]; GO:0006465 - signal peptide processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016957687.1
COORDINATES: similar to AA sequence:RefSeq:WP_008985642.1
COORDINATES: similar to AA sequence:RefSeq:WP_010381968.1
COORDINATES: similar to AA sequence:RefSeq:WP_010177532.1
manganese efflux pump MntP family protein
COORDINATES: protein motif:HMM:NF013488.2
COORDINATES: protein motif:HMM:NF012382.2
pyridoxal phosphate-dependent aminotransferase
COORDINATES: protein motif:HMM:NF013646.2
COORDINATES: protein motif:HMM:NF012655.2
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016954424.1
COORDINATES: similar to AA sequence:RefSeq:WP_007634570.1
outer membrane lipoprotein-sorting protein
COORDINATES: similar to AA sequence:RefSeq:WP_010365054.1
COORDINATES: similar to AA sequence:RefSeq:WP_012324829.1
COORDINATES: similar to AA sequence:RefSeq:WP_011042301.1
GO:0003746 - translation elongation factor activity [Evidence IEA]
GO:0043043 - peptide biosynthetic process [Evidence IEA]; GO:0006414 - translational elongation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011790230.1
COORDINATES: protein motif:HMM:TIGR03837.1
GO:0106361 - protein-arginine rhamnosyltransferase activity [Evidence IEA]
elongation factor P maturation arginine rhamnosyltransferase EarP
COORDINATES: similar to AA sequence:RefSeq:WP_005502442.1
GO:0006414 - translational elongation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019029299.1
COORDINATES: protein motif:HMM:NF018894.2
COORDINATES: similar to AA sequence:RefSeq:WP_013463122.1
COORDINATES: similar to AA sequence:RefSeq:WP_016900616.1
COORDINATES: similar to AA sequence:RefSeq:WP_004588774.1
COORDINATES: similar to AA sequence:RefSeq:WP_004588773.1
COORDINATES: similar to AA sequence:RefSeq:WP_010553983.1
COORDINATES: similar to AA sequence:RefSeq:WP_016706803.1
COORDINATES: similar to AA sequence:RefSeq:WP_010553938.1
COORDINATES: similar to AA sequence:RefSeq:WP_008112375.1
COORDINATES: protein motif:HMM:NF013069.2
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF018964.2
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: protein motif:HMM:NF018941.2
COORDINATES: similar to AA sequence:RefSeq:WP_006082587.1
COORDINATES: similar to AA sequence:RefSeq:WP_013783148.1
COORDINATES: similar to AA sequence:RefSeq:WP_010364153.1
COORDINATES: similar to AA sequence:RefSeq:WP_010364151.1
30S ribosomal protein S6 modification enzyme RimK
COORDINATES: similar to AA sequence:RefSeq:WP_011770748.1
GO:0004181 - metallocarboxypeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008167424.1
COORDINATES: similar to AA sequence:RefSeq:WP_016402025.1
COORDINATES: similar to AA sequence:RefSeq:WP_013784446.1
COORDINATES: protein motif:HMM:NF016134.2
COORDINATES: similar to AA sequence:RefSeq:WP_006087288.1
COORDINATES: similar to AA sequence:RefSeq:WP_008467229.1
COORDINATES: similar to AA sequence:RefSeq:WP_007616183.1
COORDINATES: similar to AA sequence:RefSeq:WP_011044462.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011044461.1
GO:0015486 - glycoside-pentoside-hexuronide:cation symporter activity [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0006812 - monoatomic cation transport [Evidence IEA]
glycoside-pentoside-hexuronide (GPH):cation symporter
COORDINATES: similar to AA sequence:RefSeq:WP_007375485.1
GO:0008422 - beta-glucosidase activity [Evidence IEA]
GO:0030245 - cellulose catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019026135.1
COORDINATES: similar to AA sequence:RefSeq:WP_016709341.1
exo 1,3/1,4-beta-D-glucan glucohydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_000124505.1
COORDINATES: similar to AA sequence:RefSeq:WP_016899007.1
COORDINATES: protein motif:HMM:NF021553.2
COORDINATES: similar to AA sequence:RefSeq:WP_016899451.1
COORDINATES: similar to AA sequence:RefSeq:WP_008985508.1
COORDINATES: protein motif:HMM:NF012425.2
COORDINATES: similar to AA sequence:RefSeq:WP_007636891.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004334505.1
organic hydroperoxide resistance protein
COORDINATES: similar to AA sequence:RefSeq:WP_010365275.1
COORDINATES: similar to AA sequence:RefSeq:WP_011864628.1
COORDINATES: similar to AA sequence:RefSeq:WP_010606177.1
COORDINATES: similar to AA sequence:RefSeq:WP_010558398.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010374001.1
COORDINATES: similar to AA sequence:RefSeq:WP_019029807.1
COORDINATES: similar to AA sequence:RefSeq:WP_010385927.1
COORDINATES: similar to AA sequence:RefSeq:WP_013753008.1
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]
GO:0006259 - DNA metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024867.2
COORDINATES: similar to AA sequence:RefSeq:WP_016709732.1
COORDINATES: similar to AA sequence:RefSeq:WP_008114635.1
COORDINATES: similar to AA sequence:RefSeq:WP_010367704.1
COORDINATES: protein motif:HMM:NF037257.2
COORDINATES: similar to AA sequence:RefSeq:WP_010558393.1
bifunctional diguanylate cyclase/phosphodiesterase
COORDINATES: protein motif:HMM:NF016398.2
COORDINATES: similar to AA sequence:RefSeq:WP_016899983.1
COORDINATES: similar to AA sequence:RefSeq:WP_007643094.1
GO:0016682 - oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor [Evidence IEA]
cytochrome d ubiquinol oxidase subunit II
COORDINATES: similar to AA sequence:RefSeq:WP_011044585.1
COORDINATES: similar to AA sequence:RefSeq:WP_010559056.1
COORDINATES: similar to AA sequence:RefSeq:WP_008111389.1
COORDINATES: similar to AA sequence:RefSeq:WP_016957007.1
COORDINATES: protein motif:HMM:NF015803.2
ShlB/FhaC/HecB family hemolysin secretion/activation protein
COORDINATES: protein motif:HMM:NF028537.1
GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
phosphoethanolamine--lipid A transferase
COORDINATES: similar to AA sequence:RefSeq:WP_007643116.1
COORDINATES: similar to AA sequence:RefSeq:WP_006013211.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007643119.1
COORDINATES: similar to AA sequence:RefSeq:WP_007643127.1
COORDINATES: similar to AA sequence:RefSeq:WP_012327367.1
COORDINATES: protein motif:HMM:NF013955.2
COORDINATES: similar to AA sequence:RefSeq:WP_010558169.1
COORDINATES: protein motif:HMM:NF014466.2
GO:0005509 - calcium ion binding [Evidence IEA]
GO:0007155 - cell adhesion [Evidence IEA]
thrombospondin type 3 repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019028008.1
COORDINATES: similar to AA sequence:RefSeq:WP_011771496.1
FKBP-type peptidyl-prolyl cis-trans isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_019705118.1
COORDINATES: similar to AA sequence:RefSeq:WP_011758747.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017445178.1
COORDINATES: similar to AA sequence:RefSeq:WP_015465653.1
COORDINATES: similar to AA sequence:RefSeq:WP_006793276.1
GO:0003747 - translation release factor activity [Evidence IEA]
GO:0006415 - translational termination [Evidence IEA]
alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB
COORDINATES: similar to AA sequence:RefSeq:WP_011329723.1
GO:0004731 - purine-nucleoside phosphorylase activity [Evidence IEA]
GO:0043096 - purine nucleobase salvage [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005495595.1
GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0008973 - phosphopentomutase activity [Evidence IEA]
GO:0043094 - cellular metabolic compound salvage [Evidence IEA]; GO:0009117 - nucleotide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008110733.1
GO:0004849 - uridine kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012587038.1
NupC/NupG family nucleoside CNT transporter
COORDINATES: similar to AA sequence:RefSeq:WP_008985863.1
2-oxoglutarate and iron-dependent oxygenase domain-containing protein
ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF014869.2
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010388685.1
COORDINATES: similar to AA sequence:RefSeq:WP_007376185.1
EAL domain-containing response regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008846211.1
COORDINATES: similar to AA sequence:RefSeq:WP_010361808.1
COORDINATES: similar to AA sequence:RefSeq:WP_011758279.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012371.2
serine hydrolase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017045127.1
COORDINATES: similar to AA sequence:RefSeq:WP_017217352.1
COORDINATES: similar to AA sequence:RefSeq:WP_017217351.1
GO:0008663 - 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity [Evidence IEA]; GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0009166 - nucleotide catabolic process [Evidence IEA]
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase
COORDINATES: protein motif:HMM:NF016836.2
COORDINATES: protein motif:HMM:NF039824.1
COORDINATES: protein motif:HMM:NF025704.2
COORDINATES: protein motif:HMM:NF012894.2
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009836900.1
COORDINATES: similar to AA sequence:RefSeq:WP_008137579.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009836894.1
COORDINATES: protein motif:HMM:TIGR03696.1
RHS repeat-associated core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002959042.1
GO:0016034 - maleylacetoacetate isomerase activity [Evidence IEA]
GO:0006559 - L-phenylalanine catabolic process [Evidence IEA]; GO:0006572 - tyrosine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005496663.1
GO:0004411 - homogentisate 1,2-dioxygenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005496665.1
COORDINATES: similar to AA sequence:RefSeq:WP_006791681.1
COORDINATES: similar to AA sequence:RefSeq:WP_011329971.1
COORDINATES: similar to AA sequence:RefSeq:WP_007375544.1
COORDINATES: similar to AA sequence:RefSeq:WP_006791685.1
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA
COORDINATES: similar to AA sequence:RefSeq:WP_006791686.1
COORDINATES: similar to AA sequence:RefSeq:WP_008464369.1
GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]
GO:0000413 - protein peptidyl-prolyl isomerization [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016706984.1
COORDINATES: similar to AA sequence:RefSeq:WP_010361824.1
COORDINATES: protein motif:HMM:NF024698.2
COORDINATES: similar to AA sequence:RefSeq:WP_011626373.1
COORDINATES: similar to AA sequence:RefSeq:WP_011041030.1
GO:0003908 - methylated-DNA-[protein]-cysteine S-methyltransferase activity [Evidence IEA]
methylated-DNA--[protein]-cysteine S-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_009670601.1
AlkA N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF027890.2
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_010607661.1
COORDINATES: protein motif:HMM:NF024116.2
COORDINATES: similar to AA sequence:RefSeq:WP_011041627.1
COORDINATES: similar to AA sequence:RefSeq:WP_006030588.1
GO:0046872 - metal ion binding [Evidence IEA]
SEC-C metal-binding domain-containing protein
COORDINATES: protein motif:HMM:NF037660.2
COORDINATES: similar to AA sequence:RefSeq:WP_005492274.1
COORDINATES: similar to AA sequence:RefSeq:WP_011042208.1
GO:0042910 - xenobiotic transmembrane transporter activity [Evidence IEA]
GO:0009410 - response to xenobiotic stimulus [Evidence IEA]; GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004588375.1
GO:0003333 - amino acid transmembrane transport [Evidence IEA]
aromatic amino acid transport family protein
COORDINATES: protein motif:HMM:NF015131.2
COORDINATES: protein motif:HMM:NF015823.2
ABC-type transport auxiliary lipoprotein family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010559343.1
COORDINATES: similar to AA sequence:RefSeq:WP_011329983.1
COORDINATES: similar to AA sequence:RefSeq:WP_016707120.1
COORDINATES: protein motif:HMM:NF017076.2
adenylate/guanylate cyclase domain-containing protein
COORDINATES: protein motif:HMM:NF016648.2
COORDINATES: protein motif:HMM:NF016462.2
COORDINATES: similar to AA sequence:RefSeq:WP_006792659.1
threonine/serine exporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013463042.1
COORDINATES: similar to AA sequence:RefSeq:WP_010379361.1
COORDINATES: similar to AA sequence:RefSeq:WP_007619319.1
COORDINATES: similar to AA sequence:RefSeq:WP_002960599.1
COORDINATES: similar to AA sequence:RefSeq:WP_019029821.1
COORDINATES: similar to AA sequence:RefSeq:WP_019443082.1
COORDINATES: similar to AA sequence:RefSeq:WP_011041994.1
COORDINATES: similar to AA sequence:RefSeq:WP_006086799.1
GO:0016429 - tRNA (adenine-N1-)-methyltransferase activity [Evidence IEA]
tRNA (adenine(22)-N(1))-methyltransferase TrmK
COORDINATES: similar to AA sequence:RefSeq:WP_010559315.1
GO:0030145 - manganese ion binding [Evidence IEA]; GO:0070006 - metalloaminopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017220832.1
COORDINATES: similar to AA sequence:RefSeq:WP_002960617.1
cation diffusion facilitator family transporter
COORDINATES: protein motif:HMM:NF038109.1
TapY2 family type IVa secretion system protein
COORDINATES: protein motif:HMM:NF017388.2
COORDINATES: similar to AA sequence:RefSeq:WP_011043523.1
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: protein motif:HMM:NF012398.2
COORDINATES: similar to AA sequence:RefSeq:WP_005492787.1
COORDINATES: protein motif:HMM:NF020650.2
nitrate ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF024772.2
COORDINATES: similar to AA sequence:RefSeq:WP_010361873.1
COORDINATES: similar to AA sequence:RefSeq:WP_011044752.1
GO:0015288 - porin activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007581812.1
COORDINATES: similar to AA sequence:RefSeq:WP_011329884.1
tetratricopeptide repeat-containing sulfotransferase family protein
COORDINATES: protein motif:HMM:NF016107.2
isoprenylcysteine carboxylmethyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006008177.1
COORDINATES: similar to AA sequence:RefSeq:WP_006008173.1
AraC family transcriptional regulator ligand-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008167698.1
PLP-dependent aminotransferase family protein
COORDINATES: protein motif:HMM:NF013933.2
COORDINATES: similar to AA sequence:RefSeq:WP_011043364.1
COORDINATES: protein motif:HMM:NF016701.2
COORDINATES: similar to AA sequence:RefSeq:WP_017220161.1
COORDINATES: similar to AA sequence:RefSeq:WP_007624443.1
GO:0002161 - aminoacyl-tRNA editing activity [Evidence IEA]
GO:0043039 - tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010558320.1
COORDINATES: similar to AA sequence:RefSeq:WP_011329940.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_011235281.1
COORDINATES: similar to AA sequence:RefSeq:WP_019442253.1
GO:0008964 - phosphoenolpyruvate carboxylase activity [Evidence IEA]
GO:0015977 - carbon fixation [Evidence IEA]; GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011717322.1
COORDINATES: nucleotide motif:Rfam:14.4:RF01051
cyclic di-GMP riboswitch class I; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_016707015.1
GO:0004126 - cytidine deaminase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0009972 - cytidine deamination [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00254.1
COORDINATES: similar to AA sequence:RefSeq:WP_005492770.1
GO:0016763 - pentosyltransferase activity [Evidence IEA]
GO:0009116 - nucleoside metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF023682.2
COORDINATES: protein motif:HMM:NF012711.2
COORDINATES: similar to AA sequence:RefSeq:WP_012517318.1
iron-containing redox enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005490654.1
COORDINATES: similar to AA sequence:RefSeq:WP_014107217.1
COORDINATES: similar to AA sequence:RefSeq:WP_006793320.1
COORDINATES: similar to AA sequence:RefSeq:WP_010388691.1
COORDINATES: similar to AA sequence:RefSeq:WP_007639071.1
COORDINATES: similar to AA sequence:RefSeq:WP_011329946.1
COORDINATES: protein motif:HMM:NF014864.2
COORDINATES: similar to AA sequence:RefSeq:WP_011327106.1
PAS domain-containing methyl-accepting chemotaxis protein
COORDINATES: protein motif:HMM:TIGR03296.1
M6 family metalloprotease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010389018.1
COORDINATES: similar to AA sequence:RefSeq:WP_007375531.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011329986.1
GO:0005515 - protein binding [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]; GO:0009408 - response to heat [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016957182.1
COORDINATES: similar to AA sequence:RefSeq:WP_016957181.1
GO:0015093 - ferrous iron transmembrane transporter activity [Evidence IEA]; GO:0005525 - GTP binding [Evidence IEA]
GO:0006826 - iron ion transport [Evidence IEA]
Fe(2+) transporter permease subunit FeoB
COORDINATES: similar to AA sequence:RefSeq:WP_010559388.1
COORDINATES: similar to AA sequence:RefSeq:WP_010380638.1
GO:0008199 - ferric iron binding [Evidence IEA]; GO:0004322 - ferroxidase activity [Evidence IEA]
GO:0006880 - intracellular sequestering of iron ion [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013051425.1
COORDINATES: protein motif:HMM:NF025887.2
COORDINATES: similar to AA sequence:RefSeq:WP_012324138.1
COORDINATES: protein motif:HMM:NF019008.2
GO:0042597 - periplasmic space [Evidence IEA]
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]
GO:0022900 - electron transport chain [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004744821.1
GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007378870.1
COORDINATES: protein motif:HMM:NF039336.1
DUF6058 family natural product biosynthesis protein
COORDINATES: similar to AA sequence:RefSeq:WP_010559233.1
GO:0008840 - 4-hydroxy-tetrahydrodipicolinate synthase activity [Evidence IEA]
GO:0009089 - lysine biosynthetic process via diaminopimelate [Evidence IEA]
4-hydroxy-tetrahydrodipicolinate synthase
COORDINATES: similar to AA sequence:RefSeq:WP_010388961.1
COORDINATES: similar to AA sequence:RefSeq:WP_007376372.1
GO:0030246 - carbohydrate binding [Evidence IEA]; GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0016052 - carbohydrate catabolic process [Evidence IEA]
carbohydrate binding family 9 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010381107.1
GO:0015558 - secondary active p-aminobenzoyl-glutamate transmembrane transporter activity [Evidence IEA]
GO:1902604 - p-aminobenzoyl-glutamate transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: protein motif:HMM:NF014803.2
COORDINATES: protein motif:HMM:NF012422.2
COORDINATES: similar to AA sequence:RefSeq:WP_011768445.1
GO:0033103 - protein secretion by the type VI secretion system [Evidence IEA]
type VI secretion system contractile sheath small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012325146.1
GO:0033104 - type VI protein secretion system complex [Evidence IEA]
type VI secretion system contractile sheath large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011768447.1
type VI secretion system tube protein TssD
COORDINATES: protein motif:HMM:NF024200.2
COORDINATES: protein motif:HMM:TIGR03353.2
type VI secretion system baseplate subunit TssK
COORDINATES: protein motif:HMM:TIGR03349.1
type IVB secretion system protein IcmH/DotU
COORDINATES: protein motif:HMM:NF025689.2
type VI secretion protein IcmF/TssM N-terminal domain-containing protein
COORDINATES: protein motif:HMM:TIGR03355.1
COORDINATES: similar to AA sequence:RefSeq:WP_011768453.1
COORDINATES: protein motif:HMM:NF017733.2
type VI secretion system baseplate subunit TssF
COORDINATES: protein motif:HMM:TIGR03347.1
type VI secretion system baseplate subunit TssG
COORDINATES: protein motif:HMM:TIGR03361.1
type VI secretion system tip protein TssI/VgrG
COORDINATES: protein motif:HMM:NF021456.2
COORDINATES: protein motif:HMM:NF024986.2
COORDINATES: protein motif:HMM:NF023482.2
COORDINATES: similar to AA sequence:RefSeq:WP_009836732.1
COORDINATES: protein motif:HMM:NF018884.2
GO:0007165 - signal transduction [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009836726.1
COORDINATES: protein motif:HMM:NF012245.2
COORDINATES: similar to AA sequence:RefSeq:WP_013463219.1
COORDINATES: similar to AA sequence:RefSeq:WP_010388957.1
COORDINATES: similar to AA sequence:RefSeq:WP_010560669.1
COORDINATES: similar to AA sequence:RefSeq:WP_006794315.1
COORDINATES: similar to AA sequence:RefSeq:WP_010557277.1
COORDINATES: similar to AA sequence:RefSeq:WP_004588812.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006793212.1
COORDINATES: similar to AA sequence:RefSeq:WP_011330050.1
COORDINATES: similar to AA sequence:RefSeq:WP_017217246.1
GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0006527 - arginine catabolic process [Evidence IEA]
succinylglutamate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_008127882.1
GO:0008791 - arginine N-succinyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008127881.1
aspartate aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002958609.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010372991.1
isoamylase early set domain-containing protein
COORDINATES: protein motif:HMM:NF014499.2
GO:0004134 - 4-alpha-glucanotransferase activity [Evidence IEA]
GO:0005980 - glycogen catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013463237.1
GO:0003844 - 1,4-alpha-glucan branching enzyme activity [Evidence IEA]; GO:0043169 - cation binding [Evidence IEA]; GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO:0005978 - glycogen biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016706701.1
GO:0004133 - glycogen debranching enzyme activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016706700.1
glycogen/starch/alpha-glucan phosphorylase
COORDINATES: similar to AA sequence:RefSeq:WP_005492697.1
GO:0008878 - glucose-1-phosphate adenylyltransferase activity [Evidence IEA]
GO:0005978 - glycogen biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017220125.1
COORDINATES: similar to AA sequence:RefSeq:WP_010390678.1
COORDINATES: similar to AA sequence:RefSeq:WP_010560358.1
glutathione S-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006085105.1
COORDINATES: similar to AA sequence:RefSeq:WP_016707363.1
COORDINATES: similar to AA sequence:RefSeq:WP_010559575.1
COORDINATES: similar to AA sequence:RefSeq:WP_010372967.1
GO:0009982 - pseudouridine synthase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
GO:0001522 - pseudouridine synthesis [Evidence IEA]
23S rRNA pseudouridine(2604) synthase RluF
COORDINATES: similar to AA sequence:RefSeq:WP_010180862.1
COORDINATES: similar to AA sequence:RefSeq:WP_014976673.1
COORDINATES: similar to AA sequence:RefSeq:WP_010384709.1
COORDINATES: protein motif:HMM:NF027363.2
GO:0016872 - intramolecular lyase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF022537.2
COORDINATES: similar to AA sequence:RefSeq:WP_010562218.1
cyclopropane-fatty-acyl-phospholipid synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010384713.1
COORDINATES: similar to AA sequence:RefSeq:WP_006085723.1
COORDINATES: similar to AA sequence:RefSeq:WP_011769402.1
COORDINATES: similar to AA sequence:RefSeq:WP_011073250.1
COORDINATES: similar to AA sequence:RefSeq:WP_010562213.1
COORDINATES: similar to AA sequence:RefSeq:WP_011042216.1
DUF523 and DUF1722 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010562211.1
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019441005.1
COORDINATES: similar to AA sequence:RefSeq:WP_016957381.1
LON peptidase substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005494045.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]; GO:0008172 - S-methyltransferase activity [Evidence IEA]; GO:0016782 - transferase activity, transferring sulphur-containing groups [Evidence IEA]
GO:0018339 - peptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acid [Evidence IEA]
30S ribosomal protein S12 methylthiotransferase RimO
COORDINATES: similar to AA sequence:RefSeq:WP_012323161.1
COORDINATES: similar to AA sequence:RefSeq:WP_011330063.1
COORDINATES: similar to AA sequence:RefSeq:WP_010377175.1
GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014606.2
polysaccharide biosynthesis/export family protein
COORDINATES: protein motif:HMM:TIGR01007.1
polysaccharide biosynthesis tyrosine autokinase
COORDINATES: similar to AA sequence:RefSeq:WP_010381152.1
COORDINATES: similar to AA sequence:RefSeq:WP_008166804.1
COORDINATES: similar to AA sequence:RefSeq:WP_011044014.1
GO:1990610 - acetolactate synthase regulator activity [Evidence IEA]
GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011330088.1
GO:0003984 - acetolactate synthase activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006793428.1
GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008136455.1
COORDINATES: similar to AA sequence:RefSeq:WP_010559154.1
GO:0017108 - 5'-flap endonuclease activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO:0033567 - DNA replication, Okazaki fragment processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010605486.1
nucleotide 5'-monophosphate nucleosidase PpnN
COORDINATES: similar to AA sequence:RefSeq:WP_005492661.1
COORDINATES: similar to AA sequence:RefSeq:WP_016706663.1
COORDINATES: similar to AA sequence:RefSeq:WP_012196567.1
COORDINATES: similar to AA sequence:RefSeq:WP_007376301.1
COORDINATES: similar to AA sequence:RefSeq:WP_010559132.1
GO:0004635 - phosphoribosyl-AMP cyclohydrolase activity [Evidence IEA]; GO:0004636 - phosphoribosyl-ATP diphosphatase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE
COORDINATES: similar to AA sequence:RefSeq:WP_011330107.1
GO:0000107 - imidazoleglycerol-phosphate synthase activity [Evidence IEA]
imidazole glycerol phosphate synthase subunit HisF
COORDINATES: similar to AA sequence:RefSeq:WP_006793444.1
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_002960265.1
GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]; GO:0000107 - imidazoleglycerol-phosphate synthase activity [Evidence IEA]
imidazole glycerol phosphate synthase subunit HisH
COORDINATES: similar to AA sequence:RefSeq:WP_007580650.1
GO:0004401 - histidinol-phosphatase activity [Evidence IEA]; GO:0004424 - imidazoleglycerol-phosphate dehydratase activity [Evidence IEA]
bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB
COORDINATES: similar to AA sequence:RefSeq:WP_005492368.1
GO:0004400 - histidinol-phosphate transaminase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017216830.1
GO:0004399 - histidinol dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011330118.1
GO:0003879 - ATP phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010559214.1
COORDINATES: similar to AA sequence:RefSeq:WP_010361925.1
GO:0003725 - double-stranded RNA binding [Evidence IEA]
GO:0006400 - tRNA modification [Evidence IEA]
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB
COORDINATES: similar to AA sequence:RefSeq:WP_010388855.1
COORDINATES: similar to AA sequence:RefSeq:WP_008167159.1
COORDINATES: similar to AA sequence:RefSeq:WP_005492356.1
COORDINATES: similar to AA sequence:RefSeq:WP_013463308.1
GO:0006396 - RNA processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006793461.1
GO:0032955 - regulation of division septum assembly [Evidence IEA]
cell division topological specificity factor MinE
COORDINATES: similar to AA sequence:RefSeq:WP_006793462.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0000918 - division septum site selection [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008131728.1
GO:0004857 - enzyme inhibitor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008134235.1
COORDINATES: similar to AA sequence:RefSeq:WP_006793465.1
COORDINATES: similar to AA sequence:RefSeq:WP_016706609.1
COORDINATES: similar to AA sequence:RefSeq:WP_013463320.1
COORDINATES: similar to AA sequence:RefSeq:WP_010381285.1
COORDINATES: similar to AA sequence:RefSeq:WP_010378692.1
COORDINATES: similar to AA sequence:RefSeq:WP_010381287.1
COORDINATES: similar to AA sequence:RefSeq:WP_010361952.1
COORDINATES: protein motif:HMM:NF016345.2
COORDINATES: similar to AA sequence:RefSeq:WP_010558951.1
COORDINATES: similar to AA sequence:RefSeq:WP_010179428.1
COORDINATES: similar to AA sequence:RefSeq:WP_018981811.1
COORDINATES: similar to AA sequence:RefSeq:WP_008983271.1
alanine/glycine:cation symporter family protein
COORDINATES: protein motif:HMM:NF021606.2
COORDINATES: protein motif:HMM:NF015140.2
COORDINATES: similar to AA sequence:RefSeq:WP_002961557.1
COORDINATES: similar to AA sequence:RefSeq:WP_005491081.1
COORDINATES: similar to AA sequence:RefSeq:WP_004335376.1
COORDINATES: similar to AA sequence:RefSeq:WP_005495531.1
COORDINATES: similar to AA sequence:RefSeq:WP_004335371.1
COORDINATES: similar to AA sequence:RefSeq:WP_010553403.1
COORDINATES: similar to AA sequence:RefSeq:WP_017218151.1
COORDINATES: similar to AA sequence:RefSeq:WP_010380621.1
COORDINATES: similar to AA sequence:RefSeq:WP_008608320.1
GO:0009009 - site-specific recombinase activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0009294 - DNA-mediated transformation [Evidence IEA]
COORDINATES: protein motif:HMM:NF025027.2
COORDINATES: similar to AA sequence:RefSeq:WP_019028100.1
COORDINATES: similar to AA sequence:RefSeq:WP_009840411.1
COORDINATES: protein motif:HMM:NF025126.2
COORDINATES: protein motif:HMM:NF013053.2
COORDINATES: similar to AA sequence:RefSeq:WP_010558531.1
COORDINATES: protein motif:HMM:NF013752.2
COORDINATES: similar to AA sequence:RefSeq:WP_010557885.1
COORDINATES: similar to AA sequence:RefSeq:WP_007375675.1
rhomboid family intramembrane serine protease
COORDINATES: protein motif:HMM:NF012307.2
reverse transcriptase domain-containing protein
COORDINATES: protein motif:HMM:NF019984.2
RNA-directed DNA polymerase (Reverse transcriptase)
COORDINATES: similar to AA sequence:RefSeq:WP_001020572.1
COORDINATES: similar to AA sequence:RefSeq:WP_005493490.1
COORDINATES: similar to AA sequence:RefSeq:WP_011626624.1
COORDINATES: similar to AA sequence:RefSeq:WP_006086154.1
COORDINATES: protein motif:HMM:NF012376.2
group II intron maturase-specific domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012519136.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_008951908.1
COORDINATES: similar to AA sequence:RefSeq:WP_013464179.1
COORDINATES: similar to AA sequence:RefSeq:WP_012324688.1
GO:0008783 - agmatinase activity [Evidence IEA]
GO:0008295 - spermidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013465311.1
GO:0008792 - arginine decarboxylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008111510.1
COORDINATES: similar to AA sequence:RefSeq:WP_010362707.1
COORDINATES: similar to AA sequence:RefSeq:WP_008169959.1
COORDINATES: similar to AA sequence:RefSeq:WP_010559200.1
MotA/TolQ/ExbB proton channel family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009836573.1
COORDINATES: similar to AA sequence:RefSeq:WP_008111500.1
COORDINATES: similar to AA sequence:RefSeq:WP_016900180.1
COORDINATES: similar to AA sequence:RefSeq:WP_011330149.1
COORDINATES: similar to AA sequence:RefSeq:WP_010388832.1
COORDINATES: similar to AA sequence:RefSeq:WP_010388831.1
COORDINATES: similar to AA sequence:RefSeq:WP_004334779.1
GO:0004073 - aspartate-semialdehyde dehydrogenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012257.2
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_002961846.1
COORDINATES: similar to AA sequence:RefSeq:WP_016707285.1
COORDINATES: protein motif:HMM:NF016704.2
cyclic nucleotide-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013785571.1
COORDINATES: similar to AA sequence:RefSeq:WP_019026726.1
glycine zipper 2TM domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007640250.1
penicillin-binding protein activator LpoB
COORDINATES: protein motif:HMM:NF018889.2
COORDINATES: similar to AA sequence:RefSeq:WP_011866760.1
COORDINATES: similar to AA sequence:RefSeq:WP_008488793.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012277383.1
methyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006794785.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF013188.2
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007583191.1
FAD-binding and (Fe-S)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010559264.1
COORDINATES: similar to AA sequence:RefSeq:WP_012518192.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008986 - pyruvate, water dikinase activity [Evidence IEA]; GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
GO:0016310 - phosphorylation [Evidence IEA]; GO:0006090 - pyruvate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004586305.1
pyruvate, water dikinase regulatory protein
COORDINATES: similar to AA sequence:RefSeq:WP_005492282.1
GO:0003849 - 3-deoxy-7-phosphoheptulonate synthase activity [Evidence IEA]
GO:0009423 - chorismate biosynthetic process [Evidence IEA]
3-deoxy-7-phosphoheptulonate synthase class II
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: protein motif:HMM:NF013219.2
COORDINATES: similar to AA sequence:RefSeq:WP_013463356.1
GO:0006274 - DNA replication termination [Evidence IEA]
DNA replication terminus site-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013463357.1
COORDINATES: similar to AA sequence:RefSeq:WP_005492278.1
COORDINATES: similar to AA sequence:RefSeq:WP_008169458.1
COORDINATES: protein motif:HMM:NF012403.2
COORDINATES: similar to AA sequence:RefSeq:WP_007378993.1
GO:0042925 - benzoate transmembrane transporter activity [Evidence IEA]
GO:0042919 - benzoate transport [Evidence IEA]
benzoate/H(+) symporter BenE family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_019613802.1
COORDINATES: similar to AA sequence:RefSeq:WP_010558441.1
COORDINATES: similar to AA sequence:RefSeq:WP_016706534.1
COORDINATES: similar to AA sequence:RefSeq:WP_010363594.1
COORDINATES: similar to AA sequence:RefSeq:WP_011717351.1
COORDINATES: similar to AA sequence:RefSeq:WP_008171260.1
COORDINATES: similar to AA sequence:RefSeq:WP_010364382.1
COORDINATES: similar to AA sequence:RefSeq:WP_011329686.1
COORDINATES: protein motif:HMM:NF023928.2
COORDINATES: similar to AA sequence:RefSeq:WP_006032895.1
COORDINATES: similar to AA sequence:RefSeq:WP_011041808.1
phosphate ABC transporter substrate-binding/OmpA family protein
COORDINATES: protein motif:HMM:NF024808.2
COORDINATES: similar to AA sequence:RefSeq:WP_002959200.1
GO:0004451 - isocitrate lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010556103.1
GO:0004474 - malate synthase activity [Evidence IEA]
GO:0006097 - glyoxylate cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011329702.1
YebC/PmpR family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011770593.1
GO:0016829 - lyase activity [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010376096.1
COORDINATES: similar to AA sequence:RefSeq:WP_008139315.1
COORDINATES: similar to AA sequence:RefSeq:WP_006793305.1
COORDINATES: similar to AA sequence:RefSeq:WP_012323548.1
COORDINATES: similar to AA sequence:RefSeq:WP_011329698.1
COORDINATES: similar to AA sequence:RefSeq:WP_008112267.1
COORDINATES: similar to AA sequence:RefSeq:WP_010559246.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007584614.1
COORDINATES: similar to AA sequence:RefSeq:WP_010558828.1
COORDINATES: similar to AA sequence:RefSeq:WP_010383360.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010383359.1
COORDINATES: similar to AA sequence:RefSeq:WP_010383357.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010383356.1
COORDINATES: similar to AA sequence:RefSeq:WP_010383355.1
COORDINATES: similar to AA sequence:RefSeq:WP_008466696.1
COORDINATES: similar to AA sequence:RefSeq:WP_004588493.1
COORDINATES: similar to AA sequence:RefSeq:WP_007375502.1
COORDINATES: similar to AA sequence:RefSeq:WP_013796631.1
COORDINATES: similar to AA sequence:RefSeq:WP_011044746.1
COORDINATES: protein motif:HMM:NF015531.2
COORDINATES: protein motif:HMM:NF037016.2
COORDINATES: similar to AA sequence:RefSeq:WP_017218718.1
COORDINATES: similar to AA sequence:RefSeq:WP_010375733.1
COORDINATES: similar to AA sequence:RefSeq:WP_011044703.1
COORDINATES: similar to AA sequence:RefSeq:WP_010603865.1
COORDINATES: similar to AA sequence:RefSeq:WP_012278392.1
choice-of-anchor Q domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007623082.1
GO:0001522 - pseudouridine synthesis [Evidence IEA]; GO:0009451 - RNA modification [Evidence IEA]
COORDINATES: protein motif:HMM:NF017081.2
COORDINATES: similar to AA sequence:RefSeq:WP_010560075.1
COORDINATES: similar to AA sequence:RefSeq:WP_017217880.1
COORDINATES: similar to AA sequence:RefSeq:WP_016400885.1
type 1 glutamine amidotransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006011650.1
COORDINATES: similar to AA sequence:RefSeq:WP_010370601.1
COORDINATES: similar to AA sequence:RefSeq:WP_017217877.1
COORDINATES: similar to AA sequence:RefSeq:WP_009840098.1
COORDINATES: protein motif:HMM:NF024206.2
ankyrin repeat domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006794828.1
COORDINATES: similar to AA sequence:RefSeq:WP_007581555.1
COORDINATES: similar to AA sequence:RefSeq:WP_019614612.1
COORDINATES: similar to AA sequence:RefSeq:WP_007379059.1
zinc dependent phospholipase C family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010554026.1