Plasmodium chabaudi chabaudi strain AS genome assembly, chromosome: MIT.
type: Entry
definition: Plasmodium chabaudi chabaudi strain AS genome assembly, chromosome: MIT.
sequence version: NW_015971901.1
sequence date: 2022-10-28
sequence: sequence
division: CON
label: NW_015971901.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA317457
dblink: SAMEA768774
keyword: RefSeq
source: mitochondrion Plasmodium chabaudi chabaudi
organism: Plasmodium chabaudi chabaudi
taxonomy: Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Vinckeia).
reference: 1
references: 25359557
reference: 2
reference: 3
comment: PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to LK022893.\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000819
sequence length: 5949
topology: linear
so has quality: SO_0000987
location: 1..5949
location: region:1-5949:1
RO_0002162: 31271

NW_015971901
type: RefSeq
SIO_000068: refseq

PRJNA317457
type: BioProject
SIO_000068: bioproject

SAMEA768774
type: BioSample
SIO_000068: biosample

1
title: A comprehensive evaluation of rodent malaria parasite genomes and gene expression
author: Otto, T.D.
author: Bohme, U.
author: Jackson, A.P.
author: Hunt, M.
author: Franke-Fayard, B.
author: Hoeijmakers, W.A.
author: Religa, A.A.
author: Robertson, L.
author: Sanders, M.
author: Ogun, S.A.
author: Cunningham, D.
author: Erhart, A.
author: Billker, O.
author: Khan, S.M.
author: Stunnenberg, H.G.
author: Langhorne, J.
author: Holder, A.A.
author: Waters, A.P.
author: Newbold, C.I.
author: Pain, A.
author: Berriman, M.
author: Janse, C.J.
journal: BMC Biol. 12, 86 (2014)
pubmed: 25359557
comments: Publication Status: Online-Only

25359557
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (28-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
journal: Submitted (29-MAY-2019) WTSI, Pathogen Informatics, Wellcome Trust Sanger Institute, CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5949:1
position: 5949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5949:1:source
so part of: sequence
organism: Plasmodium chabaudi chabaudi
organelle: mitochondrion
mol type: genomic DNA
strain: AS
sub species: chabaudi
chromosome: MIT

31271
type: Taxonomy
SIO_000068: taxonomy

PCHAS_MIT00100
type: Gene
subclass of: SO_0000704
RO_0002162: 31271
locus tag: PCHAS_MIT00100
so part of: sequence
location: 22..59
location: region:22-59:1
so has part: feature:22-59:1:exon
subclass of: SO_0000573

75736273
type: Gene
SIO_000068: ncbigene

position:22:1
position: 22
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:59:1
position: 59
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22-59:1:exon

PCHAS_MIT00100
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 31271
locus tag: PCHAS_MIT00100
product: ribosomal RNA
SIO_010081: PCHAS_MIT00100
subclass of: SO_0000673
so part of: PCHAS_MIT00100
location: 22..59
location: region:22-59:1
so has part: feature:22-59:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:22-59:1:exon

PCHAS_MIT00200
type: Gene
subclass of: SO_0000704
RO_0002162: 31271
locus tag: PCHAS_MIT00200
so part of: sequence
location: 60..113
location: region:60-113:1
so has part: feature:60-113:1:exon
subclass of: SO_0000573

75736274
type: Gene
SIO_000068: ncbigene

position:60:1
position: 60
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:113:1
position: 113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:60-113:1:exon

PCHAS_MIT00200
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 31271
locus tag: PCHAS_MIT00200
product: ribosomal RNA
SIO_010081: PCHAS_MIT00200
subclass of: SO_0000673
so part of: PCHAS_MIT00200
location: 60..113
location: region:60-113:1
so has part: feature:60-113:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:60-113:1:exon

PCHAS_MIT00300
type: Gene
subclass of: SO_0000704
RO_0002162: 31271
locus tag: PCHAS_MIT00300
so part of: sequence
location: 114..152
location: region:114-152:1
so has part: feature:114-152:1:exon
subclass of: SO_0000573

75736275
type: Gene
SIO_000068: ncbigene

position:114:1
position: 114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:152:1
position: 152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:114-152:1:exon

PCHAS_MIT00300
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 31271
locus tag: PCHAS_MIT00300
product: ribosomal RNA
SIO_010081: PCHAS_MIT00300
subclass of: SO_0000673
so part of: PCHAS_MIT00300
location: 114..152
location: region:114-152:1
so has part: feature:114-152:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:114-152:1:exon

PCHAS_MIT00400
type: Gene
subclass of: SO_0000704
RO_0002162: 31271
locus tag: PCHAS_MIT00400
so part of: sequence
location: complement(192..214)
location: region:192-214:-1
so has part: feature:192-214:-1:exon
subclass of: SO_0000573

75736276
type: Gene
SIO_000068: ncbigene

position:192:-1
position: 192
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:214:-1
position: 214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:192-214:-1:exon

PCHAS_MIT00400
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 31271
locus tag: PCHAS_MIT00400
product: ribosomal RNA
SIO_010081: PCHAS_MIT00400
subclass of: SO_0000673
so part of: PCHAS_MIT00400
location: complement(192..214)
location: region:192-214:-1
so has part: feature:192-214:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:192-214:-1:exon

PCHAS_MIT00500
type: Gene
subclass of: SO_0000704
RO_0002162: 31271
locus tag: PCHAS_MIT00500
so part of: sequence
location: complement(270..376)
location: region:270-376:-1
so has part: feature:270-376:-1:exon
subclass of: SO_0000573

75736277
type: Gene
SIO_000068: ncbigene

position:270:-1
position: 270
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:376:-1
position: 376
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:270-376:-1:exon

PCHAS_MIT00500
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 31271
locus tag: PCHAS_MIT00500
product: ribosomal RNA
SIO_010081: PCHAS_MIT00500
subclass of: SO_0000673
so part of: PCHAS_MIT00500
location: complement(270..376)
location: region:270-376:-1
so has part: feature:270-376:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:270-376:-1:exon

PCHAS_MIT00600
type: Gene
subclass of: SO_0000704
RO_0002162: 31271
locus tag: PCHAS_MIT00600
so part of: sequence
location: complement(377..494)
location: region:377-494:-1
so has part: feature:377-494:-1:exon
subclass of: SO_0000573

75736278
type: Gene
SIO_000068: ncbigene

position:377:-1
position: 377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:494:-1
position: 494
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:377-494:-1:exon

PCHAS_MIT00600
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 31271
locus tag: PCHAS_MIT00600
product: ribosomal RNA
SIO_010081: PCHAS_MIT00600
subclass of: SO_0000673
so part of: PCHAS_MIT00600
location: complement(377..494)
location: region:377-494:-1
so has part: feature:377-494:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:377-494:-1:exon

PCHAS_MIT00700
type: Gene
subclass of: SO_0000704
RO_0002162: 31271
locus tag: PCHAS_MIT00700
so part of: sequence
location: complement(495..582)
location: region:495-582:-1
so has part: feature:495-582:-1:exon
subclass of: SO_0000573

75736279
type: Gene
SIO_000068: ncbigene

position:495:-1
position: 495
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:582:-1
position: 582
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:495-582:-1:exon

PCHAS_MIT00700
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 31271
locus tag: PCHAS_MIT00700
product: ribosomal RNA
SIO_010081: PCHAS_MIT00700
subclass of: SO_0000673
so part of: PCHAS_MIT00700
location: complement(495..582)
location: region:495-582:-1
so has part: feature:495-582:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:495-582:-1:exon

PCHAS_MIT00800
type: Gene
subclass of: SO_0000704
RO_0002162: 31271
locus tag: PCHAS_MIT00800
so part of: sequence
location: complement(583..613)
location: region:583-613:-1
so has part: feature:583-613:-1:exon
subclass of: SO_0000573

75736280
type: Gene
SIO_000068: ncbigene

position:583:-1
position: 583
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:613:-1
position: 613
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:583-613:-1:exon

PCHAS_MIT00800
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 31271
locus tag: PCHAS_MIT00800
product: ribosomal RNA
SIO_010081: PCHAS_MIT00800
subclass of: SO_0000673
so part of: PCHAS_MIT00800
location: complement(583..613)
location: region:583-613:-1
so has part: feature:583-613:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:583-613:-1:exon

PCHAS_MIT00900
type: Gene
subclass of: SO_0000704
RO_0002162: 31271
locus tag: PCHAS_MIT00900
so part of: sequence
location: complement(614..709)
location: region:614-709:-1
so has part: feature:614-709:-1:exon
subclass of: SO_0000573

75736281
type: Gene
SIO_000068: ncbigene

position:614:-1
position: 614
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:709:-1
position: 709
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:614-709:-1:exon

PCHAS_MIT00900
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 31271
locus tag: PCHAS_MIT00900
product: ribosomal RNA
SIO_010081: PCHAS_MIT00900
subclass of: SO_0000673
so part of: PCHAS_MIT00900
location: complement(614..709)
location: region:614-709:-1
so has part: feature:614-709:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:614-709:-1:exon

PCHAS_MIT01000
type: Gene
subclass of: SO_0000704
RO_0002162: 31271
locus tag: PCHAS_MIT01000
so part of: sequence
location: complement(<716..>1507)
location: region:716-1507:-1
so has part: feature:716-1507:-1:exon
subclass of: SO_0000010

75736282
type: Gene
SIO_000068: ncbigene

position:716:-1
position: 716
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1507:-1
position: 1507
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:716-1507:-1:exon

PCHAS_MIT01000
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 31271
locus tag: PCHAS_MIT01000
product: cytochrome c oxidase subunit 3
SIO_010081: PCHAS_MIT01000
subclass of: SO_0000673
so part of: PCHAS_MIT01000
location: complement(<716..>1507)
location: region:716-1507:-1
so has part: feature:716-1507:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:716-1507:-1:exon

PCHAS_MIT01000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 31271
locus tag: PCHAS_MIT01000
codon start: 1
transl table: 4
product: cytochrome c oxidase subunit 3
translation: MLTVHIITVLINIFIVFSNFNNIKAHLVSYPSLTSLYGTSLKYFSVGILFTFNPIILLIFVYSIRESLYSTFSSLASGMLAIIISEALLFITYFWGILHFCLSPYPLYDEGIIITSSRMLILTITFILASASCMTACLQFLIEKGMSFEISSIVCIIYLLGECFASLQTTEYLHLSYYINDAVLGTLFYCVTGLHFTHVIVGLILLLTYFIRRVEQYDTNTEWSYSYLGISYVIFTHTDQMTILYWHFVEIVWLFIEFFFYSE
SIO_010081: PCHAS_MIT01000
subclass of: SO_0000673
so part of: PCHAS_MIT01000
location: complement(716..1507)
location: region:716-1507:-1
so has part: feature:716-1507:-1:exon

XP_051176912.1
type: Protein
SIO_000068: ncbiprotein

B9A1D7
type: GOA
SIO_000068: goa

IPR000298
type: InterPro
SIO_000068: interpro

IPR013833
type: InterPro
SIO_000068: interpro

IPR024791
type: InterPro
SIO_000068: interpro

IPR035973
type: InterPro
SIO_000068: interpro

B9A1D7
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:716-1507:-1:exon

PCHAS_MIT01100
type: Gene
subclass of: SO_0000704
RO_0002162: 31271
locus tag: PCHAS_MIT01100
so part of: sequence
location: 1502..1616
location: region:1502-1616:1
so has part: feature:1502-1616:1:exon
subclass of: SO_0000573

75736283
type: Gene
SIO_000068: ncbigene

position:1502:1
position: 1502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1616:1
position: 1616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1502-1616:1:exon

PCHAS_MIT01100
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 31271
locus tag: PCHAS_MIT01100
product: ribosomal RNA
SIO_010081: PCHAS_MIT01100
subclass of: SO_0000673
so part of: PCHAS_MIT01100
location: 1502..1616
location: region:1502-1616:1
so has part: feature:1502-1616:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1502-1616:1:exon

PCHAS_MIT01200
type: Gene
subclass of: SO_0000704
RO_0002162: 31271
locus tag: PCHAS_MIT01200
so part of: sequence
location: 1640..1677
location: region:1640-1677:1
so has part: feature:1640-1677:1:exon
subclass of: SO_0000573

75736284
type: Gene
SIO_000068: ncbigene

position:1640:1
position: 1640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1677:1
position: 1677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1640-1677:1:exon

PCHAS_MIT01200
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 31271
locus tag: PCHAS_MIT01200
product: ribosomal RNA
SIO_010081: PCHAS_MIT01200
subclass of: SO_0000673
so part of: PCHAS_MIT01200
location: 1640..1677
location: region:1640-1677:1
so has part: feature:1640-1677:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1640-1677:1:exon

PCHAS_MIT01300
type: Gene
subclass of: SO_0000704
RO_0002162: 31271
locus tag: PCHAS_MIT01300
so part of: sequence
location: 1685..1750
location: region:1685-1750:1
so has part: feature:1685-1750:1:exon
subclass of: SO_0000573

75736285
type: Gene
SIO_000068: ncbigene

position:1685:1
position: 1685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1750:1
position: 1750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1685-1750:1:exon

PCHAS_MIT01300
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 31271
locus tag: PCHAS_MIT01300
product: ribosomal RNA
SIO_010081: PCHAS_MIT01300
subclass of: SO_0000673
so part of: PCHAS_MIT01300
location: 1685..1750
location: region:1685-1750:1
so has part: feature:1685-1750:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1685-1750:1:exon

PCHAS_MIT01400
type: Gene
subclass of: SO_0000704
RO_0002162: 31271
locus tag: PCHAS_MIT01400
so part of: sequence
location: 1781..1816
location: region:1781-1816:1
so has part: feature:1781-1816:1:exon
subclass of: SO_0000573

75736286
type: Gene
SIO_000068: ncbigene

position:1781:1
position: 1781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1816:1
position: 1816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1781-1816:1:exon

PCHAS_MIT01400
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 31271
locus tag: PCHAS_MIT01400
product: ribosomal RNA
SIO_010081: PCHAS_MIT01400
subclass of: SO_0000673
so part of: PCHAS_MIT01400
location: 1781..1816
location: region:1781-1816:1
so has part: feature:1781-1816:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1781-1816:1:exon

PCHAS_MIT01500
type: Gene
subclass of: SO_0000704
RO_0002162: 31271
locus tag: PCHAS_MIT01500
so part of: sequence
location: 1817..1897
location: region:1817-1897:1
so has part: feature:1817-1897:1:exon
subclass of: SO_0000573

75736287
type: Gene
SIO_000068: ncbigene

position:1817:1
position: 1817
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1897:1
position: 1897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1817-1897:1:exon

PCHAS_MIT01500
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 31271
locus tag: PCHAS_MIT01500
product: ribosomal RNA
SIO_010081: PCHAS_MIT01500
subclass of: SO_0000673
so part of: PCHAS_MIT01500
location: 1817..1897
location: region:1817-1897:1
so has part: feature:1817-1897:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1817-1897:1:exon

PCHAS_MIT01600
type: Gene
subclass of: SO_0000704
RO_0002162: 31271
locus tag: PCHAS_MIT01600
so part of: sequence
location: complement(1903..2010)
location: region:1903-2010:-1
so has part: feature:1903-2010:-1:exon
subclass of: SO_0000573

75736288
type: Gene
SIO_000068: ncbigene

position:1903:-1
position: 1903
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2010:-1
position: 2010
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1903-2010:-1:exon

PCHAS_MIT01600
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 31271
locus tag: PCHAS_MIT01600
product: ribosomal RNA
SIO_010081: PCHAS_MIT01600
subclass of: SO_0000673
so part of: PCHAS_MIT01600
location: complement(1903..2010)
location: region:1903-2010:-1
so has part: feature:1903-2010:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1903-2010:-1:exon

PCHAS_MIT01700
type: Gene
subclass of: SO_0000704
RO_0002162: 31271
locus tag: PCHAS_MIT01700
so part of: sequence
location: <2212..>3462
location: region:2212-3462:1
so has part: feature:2212-3462:1:exon
subclass of: SO_0000010

75736289
type: Gene
SIO_000068: ncbigene

position:2212:1
position: 2212
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:3462:1
position: 3462
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2212-3462:1:exon

PCHAS_MIT01700
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 31271
locus tag: PCHAS_MIT01700
product: cytochrome c oxidase subunit 1
SIO_010081: PCHAS_MIT01700
subclass of: SO_0000673
so part of: PCHAS_MIT01700
location: <2212..>3462
location: region:2212-3462:1
so has part: feature:2212-3462:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2212-3462:1:exon

PCHAS_MIT01700
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 31271
locus tag: PCHAS_MIT01700
codon start: 1
transl table: 4
product: cytochrome c oxidase subunit 1
translation: MIFTVHGIIMIFFNIMPGLFGGFGNYYLPILCGSSELAYPRINSISLLLQPIAFILVILSTAAEFGGGTGWTLYPPLSTSLMSLSPVAVDVIVIGLLVSGIASIMSSLNFLTTVMHLRAKGLTLGILSVSTWSLIITSIMLLLTLPVLTGGVLMLLSDLHFNTLFFDPTFAGDPILYQHLFWFFGHPEVYILILPAFGIISHVISTNYSRSLFGNQSMILAMGCIAVLGSVVWVHHMYTTGLEVDTRAFFTSTTILISIPTGTKVFNWLCTYMSTNFGITHSSSLLSLLFICTFTFGGTTGVILGNGAIDVALHDTYYVIAHFHFVLSIGAIIALFTSVSFFQESFFGKTLRENTIIVLWSILFFVGVVLTFLPMHFLGFNVMPRRIPDYPDALNGWNMICSIGSTMTLFGLLIFK
SIO_010081: PCHAS_MIT01700
subclass of: SO_0000673
so part of: PCHAS_MIT01700
location: 2212..3462
location: region:2212-3462:1
so has part: feature:2212-3462:1:exon

XP_051176913.1
type: Protein
SIO_000068: ncbiprotein

A0A077TSC0
type: GOA
SIO_000068: goa

IPR000883
type: InterPro
SIO_000068: interpro

IPR023615
type: InterPro
SIO_000068: interpro

IPR023616
type: InterPro
SIO_000068: interpro

IPR036927
type: InterPro
SIO_000068: interpro

A0A077TSC0
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:2212-3462:1:exon

PCHAS_MIT01800
type: Gene
subclass of: SO_0000704
RO_0002162: 31271
locus tag: PCHAS_MIT01800
so part of: sequence
location: <3488..>4618
location: region:3488-4618:1
so has part: feature:3488-4618:1:exon
subclass of: SO_0000010

75736290
type: Gene
SIO_000068: ncbigene

position:3488:1
position: 3488
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:4618:1
position: 4618
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3488-4618:1:exon

PCHAS_MIT01800
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 31271
locus tag: PCHAS_MIT01800
product: cytochrome b
SIO_010081: PCHAS_MIT01800
subclass of: SO_0000673
so part of: PCHAS_MIT01800
location: <3488..>4618
location: region:3488-4618:1
so has part: feature:3488-4618:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3488-4618:1:exon

PCHAS_MIT01800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 31271
locus tag: PCHAS_MIT01800
codon start: 1
transl table: 4
product: cytochrome b
translation: MNYNSINLVKTHLMNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFFLTYLHILRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIPALVIWLCGGYTVSDPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTALKIPFYPNLLSLDVKGFNNILILFLIQSIFGVIPLSHPDNAIIVNTYVTPLQIVPEWYFLPFYAMLKTIPSKNAGLVIVVASLQLLFLLAEQRNLTTIIQFKMVFSAREYSIPIIWFMCSFYALLWIGCQLPQDIFILYGRLFIILFFSSGLFALVHYKRTHYDYSSQANI
SIO_010081: PCHAS_MIT01800
subclass of: SO_0000673
so part of: PCHAS_MIT01800
location: 3488..4618
location: region:3488-4618:1
so has part: feature:3488-4618:1:exon

XP_051176914.1
type: Protein
SIO_000068: ncbiprotein

B9A1D9
type: GOA
SIO_000068: goa

IPR005797
type: InterPro
SIO_000068: interpro

IPR005798
type: InterPro
SIO_000068: interpro

IPR016174
type: InterPro
SIO_000068: interpro

IPR027387
type: InterPro
SIO_000068: interpro

IPR036150
type: InterPro
SIO_000068: interpro

B9A1D9
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:3488-4618:1:exon

PCHAS_MIT01900
type: Gene
subclass of: SO_0000704
RO_0002162: 31271
locus tag: PCHAS_MIT01900
so part of: sequence
location: complement(4590..4614)
location: region:4590-4614:-1
so has part: feature:4590-4614:-1:exon
subclass of: SO_0000573

75736291
type: Gene
SIO_000068: ncbigene

position:4590:-1
position: 4590
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4614:-1
position: 4614
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4590-4614:-1:exon

PCHAS_MIT01900
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 31271
locus tag: PCHAS_MIT01900
product: ribosomal RNA
SIO_010081: PCHAS_MIT01900
subclass of: SO_0000673
so part of: PCHAS_MIT01900
location: complement(4590..4614)
location: region:4590-4614:-1
so has part: feature:4590-4614:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4590-4614:-1:exon

PCHAS_MIT02000
type: Gene
subclass of: SO_0000704
RO_0002162: 31271
locus tag: PCHAS_MIT02000
so part of: sequence
location: 4619..4691
location: region:4619-4691:1
so has part: feature:4619-4691:1:exon
subclass of: SO_0000573

75736292
type: Gene
SIO_000068: ncbigene

position:4619:1
position: 4619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4691:1
position: 4691
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4619-4691:1:exon

PCHAS_MIT02000
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 31271
locus tag: PCHAS_MIT02000
product: ribosomal RNA
SIO_010081: PCHAS_MIT02000
subclass of: SO_0000673
so part of: PCHAS_MIT02000
location: 4619..4691
location: region:4619-4691:1
so has part: feature:4619-4691:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4619-4691:1:exon

PCHAS_MIT02100
type: Gene
subclass of: SO_0000704
RO_0002162: 31271
locus tag: PCHAS_MIT02100
so part of: sequence
location: 4710..4794
location: region:4710-4794:1
so has part: feature:4710-4794:1:exon
subclass of: SO_0000573

75736293
type: Gene
SIO_000068: ncbigene

position:4710:1
position: 4710
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4794:1
position: 4794
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4710-4794:1:exon

PCHAS_MIT02100
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 31271
locus tag: PCHAS_MIT02100
product: ribosomal RNA
SIO_010081: PCHAS_MIT02100
subclass of: SO_0000673
so part of: PCHAS_MIT02100
location: 4710..4794
location: region:4710-4794:1
so has part: feature:4710-4794:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4710-4794:1:exon

PCHAS_MIT02200
type: Gene
subclass of: SO_0000704
RO_0002162: 31271
locus tag: PCHAS_MIT02200
so part of: sequence
location: 4795..4852
location: region:4795-4852:1
so has part: feature:4795-4852:1:exon
subclass of: SO_0000573

75736294
type: Gene
SIO_000068: ncbigene

position:4795:1
position: 4795
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4852:1
position: 4852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4795-4852:1:exon

PCHAS_MIT02200
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 31271
locus tag: PCHAS_MIT02200
product: ribosomal RNA
SIO_010081: PCHAS_MIT02200
subclass of: SO_0000673
so part of: PCHAS_MIT02200
location: 4795..4852
location: region:4795-4852:1
so has part: feature:4795-4852:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4795-4852:1:exon

PCHAS_MIT02300
type: Gene
subclass of: SO_0000704
RO_0002162: 31271
locus tag: PCHAS_MIT02300
so part of: sequence
location: 4873..4930
location: region:4873-4930:1
so has part: feature:4873-4930:1:exon
subclass of: SO_0000573

75736295
type: Gene
SIO_000068: ncbigene

position:4873:1
position: 4873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4930:1
position: 4930
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4873-4930:1:exon

PCHAS_MIT02300
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 31271
locus tag: PCHAS_MIT02300
product: ribosomal RNA
SIO_010081: PCHAS_MIT02300
subclass of: SO_0000673
so part of: PCHAS_MIT02300
location: 4873..4930
location: region:4873-4930:1
so has part: feature:4873-4930:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4873-4930:1:exon

PCHAS_MIT02400
type: Gene
subclass of: SO_0000704
RO_0002162: 31271
locus tag: PCHAS_MIT02400
so part of: sequence
location: 4953..4977
location: region:4953-4977:1
so has part: feature:4953-4977:1:exon
subclass of: SO_0000573

75736296
type: Gene
SIO_000068: ncbigene

position:4953:1
position: 4953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4977:1
position: 4977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4953-4977:1:exon

PCHAS_MIT02400
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 31271
locus tag: PCHAS_MIT02400
product: ribosomal RNA
SIO_010081: PCHAS_MIT02400
subclass of: SO_0000673
so part of: PCHAS_MIT02400
location: 4953..4977
location: region:4953-4977:1
so has part: feature:4953-4977:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4953-4977:1:exon

PCHAS_MIT02500
type: Gene
subclass of: SO_0000704
RO_0002162: 31271
locus tag: PCHAS_MIT02500
so part of: sequence
location: complement(4984..5013)
location: region:4984-5013:-1
so has part: feature:4984-5013:-1:exon
subclass of: SO_0000573

75736297
type: Gene
SIO_000068: ncbigene

position:4984:-1
position: 4984
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5013:-1
position: 5013
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4984-5013:-1:exon

PCHAS_MIT02500
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 31271
locus tag: PCHAS_MIT02500
product: ribosomal RNA
SIO_010081: PCHAS_MIT02500
subclass of: SO_0000673
so part of: PCHAS_MIT02500
location: complement(4984..5013)
location: region:4984-5013:-1
so has part: feature:4984-5013:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4984-5013:-1:exon

PCHAS_MIT02600
type: Gene
subclass of: SO_0000704
RO_0002162: 31271
locus tag: PCHAS_MIT02600
so part of: sequence
location: complement(5014..5188)
location: region:5014-5188:-1
so has part: feature:5014-5188:-1:exon
subclass of: SO_0000573

75736298
type: Gene
SIO_000068: ncbigene

position:5014:-1
position: 5014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5188:-1
position: 5188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5014-5188:-1:exon

PCHAS_MIT02600
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 31271
locus tag: PCHAS_MIT02600
product: ribosomal RNA
SIO_010081: PCHAS_MIT02600
subclass of: SO_0000673
so part of: PCHAS_MIT02600
location: complement(5014..5188)
location: region:5014-5188:-1
so has part: feature:5014-5188:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5014-5188:-1:exon

PCHAS_MIT02700
type: Gene
subclass of: SO_0000704
RO_0002162: 31271
locus tag: PCHAS_MIT02700
so part of: sequence
location: complement(5189..5270)
location: region:5189-5270:-1
so has part: feature:5189-5270:-1:exon
subclass of: SO_0000573

75736299
type: Gene
SIO_000068: ncbigene

position:5189:-1
position: 5189
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5270:-1
position: 5270
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5189-5270:-1:exon

PCHAS_MIT02700
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 31271
locus tag: PCHAS_MIT02700
product: ribosomal RNA
SIO_010081: PCHAS_MIT02700
subclass of: SO_0000673
so part of: PCHAS_MIT02700
location: complement(5189..5270)
location: region:5189-5270:-1
so has part: feature:5189-5270:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5189-5270:-1:exon

PCHAS_MIT02800
type: Gene
subclass of: SO_0000704
RO_0002162: 31271
locus tag: PCHAS_MIT02800
so part of: sequence
location: complement(5271..5326)
location: region:5271-5326:-1
so has part: feature:5271-5326:-1:exon
subclass of: SO_0000573

75736300
type: Gene
SIO_000068: ncbigene

position:5271:-1
position: 5271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5326:-1
position: 5326
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5271-5326:-1:exon

PCHAS_MIT02800
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 31271
locus tag: PCHAS_MIT02800
product: ribosomal RNA
SIO_010081: PCHAS_MIT02800
subclass of: SO_0000673
so part of: PCHAS_MIT02800
location: complement(5271..5326)
location: region:5271-5326:-1
so has part: feature:5271-5326:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5271-5326:-1:exon

PCHAS_MIT02900
type: Gene
subclass of: SO_0000704
RO_0002162: 31271
locus tag: PCHAS_MIT02900
so part of: sequence
location: complement(5327..5364)
location: region:5327-5364:-1
so has part: feature:5327-5364:-1:exon
subclass of: SO_0000573

75736301
type: Gene
SIO_000068: ncbigene

position:5327:-1
position: 5327
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5364:-1
position: 5364
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5327-5364:-1:exon

PCHAS_MIT02900
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 31271
locus tag: PCHAS_MIT02900
product: ribosomal RNA
SIO_010081: PCHAS_MIT02900
subclass of: SO_0000673
so part of: PCHAS_MIT02900
location: complement(5327..5364)
location: region:5327-5364:-1
so has part: feature:5327-5364:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5327-5364:-1:exon

PCHAS_MIT03000
type: Gene
subclass of: SO_0000704
RO_0002162: 31271
locus tag: PCHAS_MIT03000
so part of: sequence
location: complement(5365..5432)
location: region:5365-5432:-1
so has part: feature:5365-5432:-1:exon
subclass of: SO_0000573

75736302
type: Gene
SIO_000068: ncbigene

position:5365:-1
position: 5365
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5432:-1
position: 5432
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5365-5432:-1:exon

PCHAS_MIT03000
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 31271
locus tag: PCHAS_MIT03000
product: ribosomal RNA
SIO_010081: PCHAS_MIT03000
subclass of: SO_0000673
so part of: PCHAS_MIT03000
location: complement(5365..5432)
location: region:5365-5432:-1
so has part: feature:5365-5432:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5365-5432:-1:exon

PCHAS_MIT03100
type: Gene
subclass of: SO_0000704
RO_0002162: 31271
locus tag: PCHAS_MIT03100
so part of: sequence
location: complement(5433..5491)
location: region:5433-5491:-1
so has part: feature:5433-5491:-1:exon
subclass of: SO_0000573

75736303
type: Gene
SIO_000068: ncbigene

position:5433:-1
position: 5433
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5491:-1
position: 5491
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5433-5491:-1:exon

PCHAS_MIT03100
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 31271
locus tag: PCHAS_MIT03100
product: ribosomal RNA
SIO_010081: PCHAS_MIT03100
subclass of: SO_0000673
so part of: PCHAS_MIT03100
location: complement(5433..5491)
location: region:5433-5491:-1
so has part: feature:5433-5491:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5433-5491:-1:exon

PCHAS_MIT03200
type: Gene
subclass of: SO_0000704
RO_0002162: 31271
locus tag: PCHAS_MIT03200
so part of: sequence
location: complement(5492..5532)
location: region:5492-5532:-1
so has part: feature:5492-5532:-1:exon
subclass of: SO_0000573

75736304
type: Gene
SIO_000068: ncbigene

position:5492:-1
position: 5492
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5532:-1
position: 5532
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5492-5532:-1:exon

PCHAS_MIT03200
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 31271
locus tag: PCHAS_MIT03200
product: ribosomal RNA
SIO_010081: PCHAS_MIT03200
subclass of: SO_0000673
so part of: PCHAS_MIT03200
location: complement(5492..5532)
location: region:5492-5532:-1
so has part: feature:5492-5532:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5492-5532:-1:exon

PCHAS_MIT03300
type: Gene
subclass of: SO_0000704
RO_0002162: 31271
locus tag: PCHAS_MIT03300
so part of: sequence
location: complement(5531..5560)
location: region:5531-5560:-1
so has part: feature:5531-5560:-1:exon
subclass of: SO_0000573

75736305
type: Gene
SIO_000068: ncbigene

position:5531:-1
position: 5531
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5560:-1
position: 5560
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5531-5560:-1:exon

PCHAS_MIT03300
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 31271
locus tag: PCHAS_MIT03300
product: ribosomal RNA
SIO_010081: PCHAS_MIT03300
subclass of: SO_0000673
so part of: PCHAS_MIT03300
location: complement(5531..5560)
location: region:5531-5560:-1
so has part: feature:5531-5560:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5531-5560:-1:exon

PCHAS_MIT03400
type: Gene
subclass of: SO_0000704
RO_0002162: 31271
locus tag: PCHAS_MIT03400
so part of: sequence
location: complement(5561..5755)
location: region:5561-5755:-1
so has part: feature:5561-5755:-1:exon
subclass of: SO_0000573

75736306
type: Gene
SIO_000068: ncbigene

position:5561:-1
position: 5561
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5755:-1
position: 5755
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5561-5755:-1:exon

PCHAS_MIT03400
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 31271
locus tag: PCHAS_MIT03400
product: ribosomal RNA
SIO_010081: PCHAS_MIT03400
subclass of: SO_0000673
so part of: PCHAS_MIT03400
location: complement(5561..5755)
location: region:5561-5755:-1
so has part: feature:5561-5755:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5561-5755:-1:exon

PCHAS_MIT03500
type: Gene
subclass of: SO_0000704
RO_0002162: 31271
locus tag: PCHAS_MIT03500
so part of: sequence
location: complement(5756..5838)
location: region:5756-5838:-1
so has part: feature:5756-5838:-1:exon
subclass of: SO_0000573

75736307
type: Gene
SIO_000068: ncbigene

position:5756:-1
position: 5756
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5838:-1
position: 5838
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5756-5838:-1:exon

PCHAS_MIT03500
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 31271
locus tag: PCHAS_MIT03500
product: ribosomal RNA
SIO_010081: PCHAS_MIT03500
subclass of: SO_0000673
so part of: PCHAS_MIT03500
location: complement(5756..5838)
location: region:5756-5838:-1
so has part: feature:5756-5838:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5756-5838:-1:exon

PCHAS_MIT03600
type: Gene
subclass of: SO_0000704
RO_0002162: 31271
locus tag: PCHAS_MIT03600
so part of: sequence
location: complement(5838..5911)
location: region:5838-5911:-1
so has part: feature:5838-5911:-1:exon
subclass of: SO_0000573

75736308
type: Gene
SIO_000068: ncbigene

position:5911:-1
position: 5911
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5838-5911:-1:exon

PCHAS_MIT03600
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 31271
locus tag: PCHAS_MIT03600
product: ribosomal RNA
SIO_010081: PCHAS_MIT03600
subclass of: SO_0000673
so part of: PCHAS_MIT03600
location: complement(5838..5911)
location: region:5838-5911:-1
so has part: feature:5838-5911:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5838-5911:-1:exon