Allorhizobium ampelinum S4 plasmid pAtS4a, complete sequence.
type: Entry
definition: Allorhizobium ampelinum S4 plasmid pAtS4a, complete sequence.
sequence version: NC_011986.1
sequence date: 2023-02-06
sequence: sequence
division: CON
label: NC_011986.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02602976
keyword: RefSeq
source: Allorhizobium ampelinum S4
organism: Allorhizobium ampelinum S4
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Allorhizobium; Allorhizobium ampelinum.
reference: 1
references: 19251847
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP000639.1.\nStrain/DNA available from Tom Burr, Cornell University,\ntjb1@cornell.edu. A. vitis S4 was isolated by Dr. Erno Szegedi in\n1981 from aerial gall that developed on a two-year-old woody\ngrapevine cane.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/05/2023 19:47:51\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,800\nCDSs (total) :: 5,729\nGenes (coding) :: 5,554\nCDSs (with protein) :: 5,554\nGenes (RNA) :: 71\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 55\nncRNAs :: 4\nPseudo Genes (total) :: 175\nCDSs (without protein) :: 175\nPseudo Genes (ambiguous residues) :: 0 of 175\nPseudo Genes (frameshifted) :: 82 of 175\nPseudo Genes (incomplete) :: 122 of 175\nPseudo Genes (internal stop) :: 28 of 175\nPseudo Genes (multiple problems) :: 52 of 175\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 78730
topology: circular
so has quality: SO_0000988
location: 1..78730
location: region:1-78730:1
RO_0002162: 311402

NC_011986
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02602976
type: BioSample
SIO_000068: biosample

1
title: Genome sequences of three agrobacterium biovars help elucidate the evolution of multichromosome genomes in bacteria
author: Slater, S.C.
author: Goldman, B.S.
author: Goodner, B.
author: Setubal, J.C.
author: Farrand, S.K.
author: Nester, E.W.
author: Burr, T.J.
author: Banta, L.
author: Dickerman, A.W.
author: Paulsen, I.
author: Otten, L.
author: Suen, G.
author: Welch, R.
author: Almeida, N.F.
author: Arnold, F.
author: Burton, O.T.
author: Du, Z.
author: Ewing, A.
author: Godsy, E.
author: Heisel, S.
author: Houmiel, K.L.
author: Jhaveri, J.
author: Lu, J.
author: Miller, N.M.
author: Norton, S.
author: Chen, Q.
author: Phoolcharoen, W.
author: Ohlin, V.
author: Ondrusek, D.
author: Pride, N.
author: Stricklin, S.L.
author: Sun, J.
author: Wheeler, C.
author: Wilson, L.
author: Zhu, H.
author: Wood, D.W.
journal: J Bacteriol
volume: 191
issue: 8
pages: 2501-2511
year: 2009
pubmed: 19251847

19251847
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Setubal, J.
author: Wood, D.
author: Slater, S.
author: Nester, E.
author: Farrand, S.
author: Goldman, B.
author: Burr, T.
author: Goodner, B.
author: Otten, L.
author: Dickerman, A.
author: Almeida, N.
author: Sun, J.
author: Jhaveri, J.
author: Banta, L.
author: Houmiel, K.
journal: Submitted (14-MAR-2007) Virginia Bioinformatics Institute, Virginia Tech, Washington Street, Box 0477, Blacksburg, VA 24061, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:78730:1
position: 78730
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-78730:1:source
so part of: sequence
organism: Allorhizobium ampelinum S4
mol type: genomic DNA
strain: S4
isolate: Kecskemet-Hungary; ATCC BAA-846
host: Vitis vinifera cv. 'Izsaki Sarfeher'
culture collection: ATCC:BAA-846
type material: type strain of Allorhizobium ampelinum
plasmid: pAtS4a
country: Hungary: Orgovany

311402
type: Taxonomy
SIO_000068: taxonomy

AVI_RS28495
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
gene: repA
locus tag: AVI_RS28495
old locus tag: Avi_9800
so part of: sequence
location: 221..1435
location: region:221-1435:1
so has part: feature:221-1435:1:exon
subclass of: SO_0000010

position:221:1
position: 221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1435:1
position: 1435
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:221-1435:1:exon

AVI_RS28495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
gene: repA
locus tag: AVI_RS28495
old locus tag: Avi_9800
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003571859.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid partitioning protein RepA
translation: MNVAHIEKTAISEVDQLIIGQAKELSEKLKQHRLEMYPPRAMKDLREFQLAEAARYVGVTSGYLRNLSLEGRGPTPQVTPSGRRSYTAEQMEEMRQFLEQSARPGTHYIPHRRNGERLQVIAVVNFKGGSGKTTTAAHLAQFLALSGHRVLAVDLDPQASLSAIHGFQPEFDVHENETIYGAIRYDDQRRPLRDIIRKTNFPNLDLVPGNLELMEFEHDTPRILAQGQGRDYGRIFFARLDEALTSVADDYDIVLIDCPPQLGFLTMSAICAATAVLITVHPQMLDVMSMCQFLQMLGDILSTLKDVGGNMNLDWLRYLVTRHDPQDGPQAQMVAFMRSMFKNHVLLNPMVRSVAISDAAMTNQTLYEVERSAFTRATYDRAMEAMDAVNGEILELINKAWGRK
SIO_010081: AVI_RS28495
subclass of: SO_0000673
so part of: AVI_RS28495
location: 221..1435
location: region:221-1435:1
so has part: feature:221-1435:1:exon

WP_041700143.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:221-1435:1:exon

AVI_RS28500
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
gene: repB
locus tag: AVI_RS28500
old locus tag: Avi_9801
so part of: sequence
location: 1481..2518
location: region:1481-2518:1
so has part: feature:1481-2518:1:exon
subclass of: SO_0000010

position:1481:1
position: 1481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2518:1
position: 2518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1481-2518:1:exon

AVI_RS28500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
gene: repB
locus tag: AVI_RS28500
old locus tag: Avi_9801
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003595755.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid partitioning protein RepB
translation: MARKNLLSGLLDDADKNPPSLPISDATPTTLRPTTRGLGALGAVTRSIDELAARADAARDLEERLAAGETIVDLDVDLIDSSFISDRVGMDEVGFRELVEAISVRGQDSPILVRPHPDRTGRFQTVFGHRRVRAAKELGISVRAVVKKLEDRDHVIAQGQENSQRADLSFIERALFARNLELGNFGRDTIMLALGADKTTVSKMLSAIERFPEDILATVTQARAPGRDRWYGIGAALGNPAIAAKARNLLTHDDYVAASPESRFEMLERLIPKEMKVSKKGSTDQKWVSPKNLIKATIKNNGSGVTIALKPFKNSGKAAAFGTYLTENLDRLFAAFEDDQPESGD
SIO_010081: AVI_RS28500
subclass of: SO_0000673
so part of: AVI_RS28500
location: 1481..2518
location: region:1481-2518:1
so has part: feature:1481-2518:1:exon

WP_012653006.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1481-2518:1:exon

AVI_RS28505
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
gene: repC
locus tag: AVI_RS28505
old locus tag: Avi_9802
so part of: sequence
location: 2673..3887
location: region:2673-3887:1
so has part: feature:2673-3887:1:exon
subclass of: SO_0000010

position:2673:1
position: 2673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3887:1
position: 3887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2673-3887:1:exon

AVI_RS28505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
gene: repC
locus tag: AVI_RS28505
old locus tag: Avi_9802
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017270210.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid replication protein RepC
translation: MQTGNITTPFGRRPMTLALVKRQISVSEIKQGKSADKWMIFRDVKEARELYKLPPYSIAVLDALLTFYPEKELRQDAQLVVFPSNAQLMLRANGMSGATLRRHLAILVDAGMIVRKDSPNGKRYARKDGAGEIERAFGFDLSPLLARSEEFALAAQQVATDRREFLKAKESLTLCRRDVRKVISAAIEEGAEGDWEAIEAVYLDIVRQIPRTPSASDLAKILDEMQLLYEEVVNRLDLMGNSDDVSTNGAHTERHIQNSKPDSIIEFEPSYENEQGAKPSEISRPKREPIKAFPLGMVLRACPQISDYGPDGQIATWRELMSAAVVVRSMLGVSPSAYQTACETLGPENAAAVMACILERGGQINSAGGYLRDLTQRAGKGEFSLGPMLMALMRANTGNDRQAG
SIO_010081: AVI_RS28505
subclass of: SO_0000673
so part of: AVI_RS28505
location: 2673..3887
location: region:2673-3887:1
so has part: feature:2673-3887:1:exon

WP_012653007.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2673-3887:1:exon

AVI_RS28510
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28510
old locus tag: Avi_9804
so part of: sequence
location: complement(4021..4503)
location: region:4021-4503:-1
so has part: feature:4021-4503:-1:exon
subclass of: SO_0000010

position:4021:-1
position: 4021
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4503:-1
position: 4503
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4021-4503:-1:exon

AVI_RS28510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28510
old locus tag: Avi_9804
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018247203.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MSETRDLIKYKSSKGLVETTDDEVDRPLYRRLGFEGIVSFKEMDEKLAAFLRRAREDEKLTREEFASMVGLSTAVYGRYERAFSRMTVTRMIHLCELLGFQPIDMLFAAAPHLYGRTPEEAKDHLELSHLTRSLPHEAVRNLIGIIARMTPEERPERDKK
SIO_010081: AVI_RS28510
subclass of: SO_0000673
so part of: AVI_RS28510
location: complement(4021..4503)
location: region:4021-4503:-1
so has part: feature:4021-4503:-1:exon

WP_012653008.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4021-4503:-1:exon

AVI_RS28520
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28520
old locus tag: Avi_9805
so part of: sequence
location: complement(5117..5581)
location: region:5117-5581:-1
so has part: feature:5117-5581:-1:exon
subclass of: SO_0000010

position:5117:-1
position: 5117
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5581:-1
position: 5581
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5117-5581:-1:exon

AVI_RS28520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28520
old locus tag: Avi_9805
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014330854.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVKRDTSVTDFAVAPRKPRQEPQVGQSVPSKAAPATPEVVVPDKAANMQPTNIDASATNPQADVGPNQQSGKLISADEDVRRERTTTRALRQEASRLRLQDLKQTKARESKHFVNCPLDFDTKQRLARAAVENEIKMTVIIKTAIDQYLRDNGY
SIO_010081: AVI_RS28520
subclass of: SO_0000673
so part of: AVI_RS28520
location: complement(5117..5581)
location: region:5117-5581:-1
so has part: feature:5117-5581:-1:exon

WP_012653009.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5117-5581:-1:exon

AVI_RS28525
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28525
old locus tag: Avi_9806
so part of: sequence
location: complement(5586..6287)
location: region:5586-6287:-1
so has part: feature:5586-6287:-1:exon
subclass of: SO_0000010

position:5586:-1
position: 5586
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6287:-1
position: 6287
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5586-6287:-1:exon

AVI_RS28525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28525
old locus tag: Avi_9806
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008840408.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MTICMSAVSGKGGAGKTTAVILLAGEFALEGKSVLLIDADGRQNLSTWFQRSIDKNCQPDGIALVTAAQGAGIRQVLEQDAADYDVVIMDSPGQDTVTRDTIIAGSQLVVTPIQPAQDEIVAAGQAASDVADMSDQIGRQIPHLIYRTRISMPNRALEEYRLIRPFVANLQEGGYNSHLLETELVERNPYREIRTGYGTLQMLELTDPVKKARAEALAFKHEVESYLQTTARG
SIO_010081: AVI_RS28525
subclass of: SO_0000673
so part of: AVI_RS28525
location: complement(5586..6287)
location: region:5586-6287:-1
so has part: feature:5586-6287:-1:exon

WP_012653010.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5586-6287:-1:exon

AVI_RS28530
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
gene: mobC
locus tag: AVI_RS28530
old locus tag: Avi_9807
so part of: sequence
location: 6996..7397
location: region:6996-7397:1
so has part: feature:6996-7397:1:exon
subclass of: SO_0000010

position:6996:1
position: 6996
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7397:1
position: 7397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6996-7397:1:exon

AVI_RS28530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
gene: mobC
locus tag: AVI_RS28530
old locus tag: Avi_9807
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015241629.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid mobilization relaxosome protein MobC
translation: MSENSLVTSATKARKDRLVNVRLTDAEHGKIEEAAKAADMSVSAFFRSLLLEGAGVRPILTRDDRLIMAALLEDMRKIGVNLNQVARALNSGKAVHPSELDINLANVQSIQAAVLLELRSLSRRAGYQRRGEE
SIO_010081: AVI_RS28530
subclass of: SO_0000673
so part of: AVI_RS28530
location: 6996..7397
location: region:6996-7397:1
so has part: feature:6996-7397:1:exon

WP_012653011.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6996-7397:1:exon

AVI_RS28535
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28535
old locus tag: Avi_9808
so part of: sequence
location: 7399..10161
location: region:7399-10161:1
so has part: feature:7399-10161:1:exon
subclass of: SO_0000010

position:7399:1
position: 7399
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10161:1
position: 10161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7399-10161:1:exon

AVI_RS28535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28535
old locus tag: Avi_9808
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014330857.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEFFFGAFTSEWEQKRAALLHEMSLGGKAAQSEENLFKYVHQIKEVRRGGGGPKAKPMRMPRMQFPRISMPSGSAAASGRPMEARLTSIAKGSQPAVVKMASYGGGARVGSMLNYVSRGGELKVENENGEKLEGREDLARVRGDWNHLFQNRTESRDIGSFSVEVAASADGEDLHGRVRDILSSGFGDRRYVYAVAERADGSLTIDGLVVLRSGQGKRLTADARAAGFVQQSFDASAVAGQGAARFSFGGYGNGVDYGTTKVRELIADSAEVRDDRGRLIADGKAAGDLVQKEWREELHSRKSRDVMHVIMSARGGTDAGAFEGAVRDFLADQFAGHRYVFAMHDPETDTKEAGEGGKRPHVHAHAIVTMRSEAGDRIETTPATFRQWREVMAEKARDHGINMEMTDRREFASAPAYTRNQVRAVNRDGRTEHVGTSEPAQARYDAKRSGRRTVASSDRSRQYTVKALETWQKIAAVAGDRQTVAYAAEYRDTLQTGLADPQALNSGTVIEADFGGDYRSNMVALNKIISEAEDMREQTRPEFEVYEKKVEIALFKLERSAGTEDRAAFEEVAEAAREFVNLRRELVEIGERDALRANGGWTEQEDGADLAEARAAVETTEQASPEDRWDAAVAKYGEHMVEVGNNVLMEIEHHREGIARVEAGEFDASDLERYKAGLHAALEDAADTAVGGNDYLREVGNNDPELKEAVESLDRHVAAKEAEEVRDAIGRWAWNAASETHGSDVVITGHKQMENVNYYRDGLQMIDAGELSETDRESFKAGLAKSLETAAEAAVEGNGYIRDLAKHDQDLNTAIEKLEREDGRSDTDGSAKTPATTDVVDERQRDLQAEIEDERGQPDEREAHELADVEATHKQQDRVNKERGGETTRTDPAQQHVPRLEELEREQTEQRKRDRDDRER
SIO_010081: AVI_RS28535
subclass of: SO_0000673
so part of: AVI_RS28535
location: 7399..10161
location: region:7399-10161:1
so has part: feature:7399-10161:1:exon

WP_012653012.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7399-10161:1:exon

AVI_RS28540
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28540
so part of: sequence
location: 10168..10368
location: region:10168-10368:1
so has part: feature:10168-10368:1:exon
subclass of: SO_0000010

position:10168:1
position: 10168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10368:1
position: 10368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10168-10368:1:exon

AVI_RS28540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28540
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTEKFVIQADNSKADEGAGKVMGYAILLVAGLGVLSYVYQTVVGWYEAAATWFADMGQYLAGFWPF
SIO_010081: AVI_RS28540
subclass of: SO_0000673
so part of: AVI_RS28540
location: 10168..10368
location: region:10168-10368:1
so has part: feature:10168-10368:1:exon

WP_041700145.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10168-10368:1:exon

AVI_RS28545
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28545
old locus tag: Avi_9810
so part of: sequence
location: complement(10420..12519)
location: region:10420-12519:-1
so has part: feature:10420-12519:-1:exon
subclass of: SO_0000010

position:10420:-1
position: 10420
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12519:-1
position: 12519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10420-12519:-1:exon

AVI_RS28545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28545
old locus tag: Avi_9810
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011982858.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretory system conjugative DNA transfer family protein
translation: MTKGFKAVYLAFCLAVAFAAWMLGYGAGLHLFYGDGRILDTTIRSNPFAPIQQFWAYSDNPTLQKVALGSLVPAFVIAAITAYLGLRPVTSPLGDAAFQDIAGLRMGKWFGKKGHIFGGFGGKVLRAQDDRHHLIIGPTRSGKGAGYVIPNALMHEGSMIVTDLKGEVFRATAGYRKKNGSQVFIFAPGSERTNSYNPLDFVRPERGNRTTDIQNIASILVPENTESENSVWQAIAQNVIAGAISYMLESPFYHDRRNLGEINSFFNSGMDLQALMKHIKEKEPYLSKFTVESFNSYISLSDRAAASALLDIQKAMRPFKNERVVAATNFTDMDLRAMKRRPITIYLAPNITDITLLRPLLTLFVQQVMNILTLEHDPNSVPVYFLLDEFRQLKRMDEIMTKLPYVAGYNIKLAFIIQDLKNLDEIYGETSRHSLLGNCGYQLILGANDQATADYASRALGKRTIRYSSESRTIEIMGLPRRTKVEQIRERDLMMSQEVRQMPENRMILLVEGQRPIFAEKLRFFNTQPFKAAEAYAQAHIPSVPDIEYLPSKPVPATTAEYENAGNVAPVAEPSAAVQTNIPEAGPAQKEPEKQIPAAEAPEPAQATAPAAPPAKRTVNPAALTSKTKATPAARPKAPKRNSSTSDDIARRKEIEALQSLAVQRLREQVEKASAGKNPTKRKNIMDVFAATVPDPETA
SIO_010081: AVI_RS28545
subclass of: SO_0000673
so part of: AVI_RS28545
location: complement(10420..12519)
location: region:10420-12519:-1
so has part: feature:10420-12519:-1:exon

WP_012653013.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10420-12519:-1:exon

AVI_RS28550
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
gene: virB11
locus tag: AVI_RS28550
old locus tag: Avi_9811
so part of: sequence
location: complement(12516..13538)
location: region:12516-13538:-1
so has part: feature:12516-13538:-1:exon
subclass of: SO_0000010

position:12516:-1
position: 12516
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13538:-1
position: 13538
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12516-13538:-1:exon

AVI_RS28550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
gene: virB11
locus tag: AVI_RS28550
old locus tag: Avi_9811
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009469545.1
GO component: GO:0043684 - type IV secretion system complex [Evidence IEA]
GO process: GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P-type DNA transfer ATPase VirB11
translation: MNAPAGNPLVHDPHYFLTRSLEPIRPFLDDPKVVEIAINKPGHVYVERFGADHMEHHLIDVLTAQEIENIGERVAASTKQFLNQANPILSAALPTGERIQVVLPPAAPDGGSITIRKQVVQNFSLEDYRDNGSLDKVSVAVGGLSNVDRELIGYLRQEKIYDFIHTAITKRVSILISGGTSSGKTTFLNACLNSVDLNERILTLEDTRELFPPQKNAVHLVASKGGQGTSNVTIQNLLESALRMRPDRLFVGEIRGAEAFSFLRAINTGHPGSMSTVHADTPMGAYEQLAMMMQQSGMSAGYSKQDLMSYIQMVIPIVIQLRREGGKRGVSEIFFARDEA
SIO_010081: AVI_RS28550
subclass of: SO_0000673
so part of: AVI_RS28550
location: complement(12516..13538)
location: region:12516-13538:-1
so has part: feature:12516-13538:-1:exon

WP_012653014.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12516-13538:-1:exon

AVI_RS28555
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
gene: virB10
locus tag: AVI_RS28555
old locus tag: Avi_9812
so part of: sequence
location: complement(13519..14727)
location: region:13519-14727:-1
so has part: feature:13519-14727:-1:exon
subclass of: SO_0000010

position:13519:-1
position: 13519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14727:-1
position: 14727
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13519-14727:-1:exon

AVI_RS28555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
gene: virB10
locus tag: AVI_RS28555
old locus tag: Avi_9812
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017268591.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretion system protein VirB10
translation: MKRSPELEAMAQADETDVSNKNAKRNQTAGMAALVIFGVIAAYMVLATSKDEPRDNSQSDEEFRTTTFRPPGFVRDGEPQPAPEQPVVVLPPPPPPPEPPADTTTFNVPPPPVAPPPTVEVPKVEEFPERFRSKLITMDQNLGGNGNGSLDGSASGPPLTVAGEDKNSQYLSSASAIGDRSAKARQLKRLDALVPEGTLIPGILETAIVSDLPGQIRAITSQDVYSFDGRRVIIPTGTRLIGEYQSEVTRGQKRIFVVWTRLIRDDGASVRLNSIGADSLGRSGLTGHVDNKFRERFGASILLSIVGGGASYLTGYGSEQSSGSNNDDAQRGADLARETIAQTFSDMANTVLSENLRIPPTISVPQGERIFIFVRQDLDFSDMYDDPVTEAMKEIKRERSSR
SIO_010081: AVI_RS28555
subclass of: SO_0000673
so part of: AVI_RS28555
location: complement(13519..14727)
location: region:13519-14727:-1
so has part: feature:13519-14727:-1:exon

WP_012653015.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13519-14727:-1:exon

AVI_RS28560
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28560
old locus tag: Avi_9813
so part of: sequence
location: complement(14727..15536)
location: region:14727-15536:-1
so has part: feature:14727-15536:-1:exon
subclass of: SO_0000010

position:15536:-1
position: 15536
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14727-15536:-1:exon

AVI_RS28560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28560
old locus tag: Avi_9813
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018210779.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TrbG/VirB9 family P-type conjugative transfer protein
translation: MRVRLLFSAAFMAATMTHAFGAQQPRPGTLDSRVTSVVYQPNNVVKVSATYGISTMIIFDEDEKFETISLGDTDSWQVAPSEKGNILFVKPIAKGVSTNMNVVTSKRIYFLELNDYAPTDERKVFGIRFVYPEKDLNASLRKEAEFRAANPNVSNIDKANVNIDYSFSGDAALKPSMVFDDGKKTFFKFKGRVPAIFAVQSDFSETLRNFRKEGEYIVVDGTATQYTLRDGNQWTCIFNLRKPDFAAPDPDIMAPKPDPDASKRRRSGN
SIO_010081: AVI_RS28560
subclass of: SO_0000673
so part of: AVI_RS28560
location: complement(14727..15536)
location: region:14727-15536:-1
so has part: feature:14727-15536:-1:exon

WP_012653016.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14727-15536:-1:exon

AVI_RS28565
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28565
old locus tag: Avi_9815
so part of: sequence
location: complement(15533..16225)
location: region:15533-16225:-1
so has part: feature:15533-16225:-1:exon
subclass of: SO_0000010

position:15533:-1
position: 15533
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16225:-1
position: 16225
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15533-16225:-1:exon

AVI_RS28565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28565
old locus tag: Avi_9815
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011982854.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretion system protein
translation: MADSNEALRSYFQDGDKWEQEIVKKANRSRTFAWFIALIMSAITLMSLGTLVMLVPLKTFEPYIVEVDKNTGYIEVKTGLTRSANLTDQQAVTQANVVRYIRSREGYDPFAIQQNFGIAALLSTADAAKELQDEWSAANPNNPGRRLGRNKKITVDVKSVTFSNASTALVRFSTTESSESDNITRHYISVVRFRYTDTPERNDWRFENPLGFQVYNYRRDQETVTPGAAG
SIO_010081: AVI_RS28565
subclass of: SO_0000673
so part of: AVI_RS28565
location: complement(15533..16225)
location: region:15533-16225:-1
so has part: feature:15533-16225:-1:exon

WP_012653017.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15533-16225:-1:exon

AVI_RS28570
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28570
old locus tag: Avi_9816
so part of: sequence
location: complement(16261..17289)
location: region:16261-17289:-1
so has part: feature:16261-17289:-1:exon
subclass of: SO_0000010

position:16261:-1
position: 16261
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17289:-1
position: 17289
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16261-17289:-1:exon

AVI_RS28570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28570
old locus tag: Avi_9816
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018210781.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretion system protein
translation: MEDFLGGLLDRIEQTGASFTQSAYGVVASEVTPLLTVLLIAYVAYYGLQLIMGTARVSVGEVISRVVRMTLIVAFINSWGNFNTFFYAWLSDTPEDVGRAILAVSNTGITEPTNGLSMIWETANKAAGAFAEQAGYFSVLPAMVGFLIMFGVGVFIAVALAILLLAKVMMWVLLGTAPIFIACLLFQPTRSYGMAWFQSVLMYAIIPLFVYVVAAFLISAMDPELTKVAAAADQRRLQLDDVAAFLLLCAAGAFVLFNIQTLAQGITGGVAAGIGQVARTVGGLTGFSAPAAALTGARSVSGAAGRIGMAARERTHAGMRENIRNASADAMQKSISSNSVPR
SIO_010081: AVI_RS28570
subclass of: SO_0000673
so part of: AVI_RS28570
location: complement(16261..17289)
location: region:16261-17289:-1
so has part: feature:16261-17289:-1:exon

WP_012653018.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16261-17289:-1:exon

AVI_RS31675
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS31675
old locus tag: Avi_9817
so part of: sequence
location: complement(17302..17529)
location: region:17302-17529:-1
so has part: feature:17302-17529:-1:exon
subclass of: SO_0000010

position:17302:-1
position: 17302
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17529:-1
position: 17529
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17302-17529:-1:exon

AVI_RS31675
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS31675
old locus tag: Avi_9817
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017265131.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIKAFEIAGTVLLVATFTAGLAGCGTAAKEKTAPCKRPANMTSYAEDPRHDCGPMTSVNGEPSAALAAIGTIATE
SIO_010081: AVI_RS31675
subclass of: SO_0000673
so part of: AVI_RS31675
location: complement(17302..17529)
location: region:17302-17529:-1
so has part: feature:17302-17529:-1:exon

WP_012653019.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17302-17529:-1:exon

AVI_RS28575
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28575
old locus tag: Avi_9818
so part of: sequence
location: complement(17522..18220)
location: region:17522-18220:-1
so has part: feature:17522-18220:-1:exon
subclass of: SO_0000010

position:17522:-1
position: 17522
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18220:-1
position: 18220
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17522-18220:-1:exon

AVI_RS28575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28575
old locus tag: Avi_9818
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009469551.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretion system protein
translation: MKKTIATAFSLALASTAYAQVPTIDNANLKVAQETSKTTTDILDTNKEVLKTVEETLKAVTGDRGSVQSPMQNLAIGNGFSVSQMPSFDSLMSGGVPNFGNMGGDIGKIASTFINGLQLVKNLSGKADSTFSGDKSYEEVMNTVLGVAALVTGSNQAVQQRTQSFQQAGQQIGKAEDIKGSIDQNTQLQVQSGLVLNEMIGVMNGTVQSLNAQNQQRLVDMSNSKKAMTYGD
SIO_010081: AVI_RS28575
subclass of: SO_0000673
so part of: AVI_RS28575
location: complement(17522..18220)
location: region:17522-18220:-1
so has part: feature:17522-18220:-1:exon

WP_012653020.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17522-18220:-1:exon

AVI_RS28580
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28580
old locus tag: Avi_9819
so part of: sequence
location: complement(18233..19321)
location: region:18233-19321:-1
so has part: feature:18233-19321:-1:exon
subclass of: SO_0000010

position:18233:-1
position: 18233
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19321:-1
position: 19321
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18233-19321:-1:exon

AVI_RS28580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28580
old locus tag: Avi_9819
EC number: 4.2.2.n1
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014531075.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: lytic transglycosylase domain-containing protein
translation: MRKSPTLVLLATAMSIGAPSAAFTQVPITDAALTADDTVREKTTDDIKETDKKRHTVSTSVTCSMYKKGKGGDAPSAAQANPEIVGLVKRVAQEEGVDETLFMSLVYQESRFNPCAKSPVGATGLSQLMPGTAKDLGVDPNNIEDNLRGGARYLKQQLKRFNGNTNLALAAYNAGPGNVQKYGGIPPFKETQGYVASITKQWMPQFGGSDTSNIPMNYGGGSTAFSGARDSSMNAMATSQSITESSGNVSSWLQQLGQMQTGTIQDSWDQNSGARNANLEMMNQVIRLGATMAELMNSKNALDLGERSGSSRTSSVKKNDDKDPETVKLCDPALNVEWNEKEQACVQKRERASEMKLMLSTQ
SIO_010081: AVI_RS28580
subclass of: SO_0000673
so part of: AVI_RS28580
location: complement(18233..19321)
location: region:18233-19321:-1
so has part: feature:18233-19321:-1:exon

WP_012653021.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18233-19321:-1:exon

AVI_RS28585
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28585
old locus tag: Avi_9821
so part of: sequence
location: complement(19318..21777)
location: region:19318-21777:-1
so has part: feature:19318-21777:-1:exon
subclass of: SO_0000010

position:19318:-1
position: 19318
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21777:-1
position: 21777
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19318-21777:-1:exon

AVI_RS28585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28585
old locus tag: Avi_9821
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011971088.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: VirB4 family type IV secretion/conjugal transfer ATPase
translation: MLKVIKEELGFGKVAGNERPMSVHIPYMRHVSDTVIGLENGSLASVIKLDGLFFQTEDQAELNMRSVVQNTMIRALGSSRFSLWSTVIRREVETEIGGTFDQSFCDILNTRYMGQLRKKRMFTNEIYLTIVRSGMRGALGVGDSLKRIFTQSNKDAKTQATREEVTDLEELIGNIVRELSKYGARSLGITYRKKSDDIAKIEGQEEETKGEPYSEPCEFFNSILTGSVSRKMRLPRMGIRNFIGTSRLHFAKRAFHAQAAVDEDSRYGALLSIKEYPPFTGPGMLDGLLQVNHEFILTQSFTLADKPIAQERITRLQRQIRASDEAGTSVESDINFALDSMLNQEAVFGFHHFSLLCISRDLEGLSRCVSELGACLTDMNINWLREDLNLEAAFWAQLPGNHSYIARKAMLSSSNFSGLSSMHNFASGQAERTHWGLPITILETTSQTPYWFNFHRRDIGHFTVTGPTGSGKTVGLSFLLAQAMRVSPTPRAVFFDKDRGAEIFVRAIGGSYEILSPGTPTGFNPLQLENTGPNREFLQRLLKAMLGGRDRRDFTQEDEDIIERAVVRLMEEPAQQRNLTNLGNLLMGRARADANDLYSRLRPWTEGEKAWLFNAPHDVLSFSGRTVFGFDMTSILGNEELRTPALMYLYHRLDELLDGNPVMFFMDEGWQLLLDETFSAFIVDKMKTIRKLNGIVGFGTQSAADIAKSKVSHTLIEQSSTNIHFPNPRADEESYIKRFGLTVKEYNFIKNTPPEKRTFLIKHGNDSVIARLDLSSMPDLVKVLSGRKETIEECAALREQYGDEPENWLAKFCGWENAE
SIO_010081: AVI_RS28585
subclass of: SO_0000673
so part of: AVI_RS28585
location: complement(19318..21777)
location: region:19318-21777:-1
so has part: feature:19318-21777:-1:exon

WP_012653022.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19318-21777:-1:exon

AVI_RS28590
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28590
so part of: sequence
location: complement(21780..22079)
location: region:21780-22079:-1
so has part: feature:21780-22079:-1:exon
subclass of: SO_0000010

position:21780:-1
position: 21780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22079:-1
position: 22079
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21780-22079:-1:exon

AVI_RS28590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28590
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014531077.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: VirB3 family type IV secretion system protein
translation: MSEFSDEKPALTPLVIGLTRSPTLWGVPYMAVVLIIGLTIIGWLASNHLAALLLAPVGYLVLFSLCTWDAKILDVLQVSSRKTPRTPNKRFWGTNSYGP
SIO_010081: AVI_RS28590
subclass of: SO_0000673
so part of: AVI_RS28590
location: complement(21780..22079)
location: region:21780-22079:-1
so has part: feature:21780-22079:-1:exon

WP_080517092.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21780-22079:-1:exon

AVI_RS28595
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28595
old locus tag: Avi_9822
so part of: sequence
location: complement(22081..22431)
location: region:22081-22431:-1
so has part: feature:22081-22431:-1:exon
subclass of: SO_0000010

position:22081:-1
position: 22081
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22431:-1
position: 22431
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22081-22431:-1:exon

AVI_RS28595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28595
old locus tag: Avi_9822
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009469555.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TrbC/VirB2 family protein
translation: MKKVKLGQSQAVKMIALLGVVAAVQIVGAELAFAQGAGGGGSGAFGPIQTAVQMIVDFITGPFGRLLAIIAVIALGFMAFAGRLSWFTAGAVVIGIGLVFGAPAIVDQMISSVGGQ
SIO_010081: AVI_RS28595
subclass of: SO_0000673
so part of: AVI_RS28595
location: complement(22081..22431)
location: region:22081-22431:-1
so has part: feature:22081-22431:-1:exon

WP_012653023.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22081-22431:-1:exon

AVI_RS28600
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28600
old locus tag: Avi_9824
so part of: sequence
location: complement(22444..23412)
location: region:22444-23412:-1
so has part: feature:22444-23412:-1:exon
subclass of: SO_0000010

position:22444:-1
position: 22444
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23412:-1
position: 23412
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22444-23412:-1:exon

AVI_RS28600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28600
old locus tag: Avi_9824
EC number: 4.2.2.n1
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013845317.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: lytic transglycosylase domain-containing protein
translation: MENRARMAGFSGTTVLLGTALVALWSANFAYAQDAVKNTRIASAYNGSEASGSPSLATNFAERWAGEAVPAKEFVLGADGVVKDANKQNSTTETAASPDTNIGATETPYVDVTGSIGGSPTASRATGSLSQIGAGNVLASPVMGAKECGASPMTPDEIKALVVETARRHQVDEGFAVAITWAESRFDVVRNSPKGARGPMQLIPDTATRFGVVDICDPRQNIEGGIKYLRFLLDEFQNPLLVAAAYNSGENRIYEYGGVPPFQETVGYVAKVLNFQLGLPMPVGKRKAGNVVREAAATNTANGSGVIAVEKTGKFVGGVMHF
SIO_010081: AVI_RS28600
subclass of: SO_0000673
so part of: AVI_RS28600
location: complement(22444..23412)
location: region:22444-23412:-1
so has part: feature:22444-23412:-1:exon

WP_012653024.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22444-23412:-1:exon

AVI_RS28605
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28605
old locus tag: Avi_9825
so part of: sequence
location: 23570..24178
location: region:23570-24178:1
so has part: feature:23570-24178:1:exon
subclass of: SO_0000010

position:23570:1
position: 23570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24178:1
position: 24178
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23570-24178:1:exon

AVI_RS28605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28605
old locus tag: Avi_9825
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013845318.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIRTIITALAGCAMATQAFAAPAINKDYVKSLAAPGKTALVIEYYDGNGKVVDRKGYATASGFKAVSGTDFKIDDKTTVHLYGLQPCKGDLVNRTEDYAGTCDDYALKQLQVMLQSPKVVFCRAFVSEQGATMQNATCYGYYNYPGAMDSVDNFEEQLLSLGALRLAKKPDGSVERPDLQEAEKLGKKGDFGMWADPRVKSQ
SIO_010081: AVI_RS28605
subclass of: SO_0000673
so part of: AVI_RS28605
location: 23570..24178
location: region:23570-24178:1
so has part: feature:23570-24178:1:exon

WP_012653025.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23570-24178:1:exon

AVI_RS28610
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28610
old locus tag: Avi_9826
so part of: sequence
location: 24175..24714
location: region:24175-24714:1
so has part: feature:24175-24714:1:exon
subclass of: SO_0000010

position:24175:1
position: 24175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24714:1
position: 24714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24175-24714:1:exon

AVI_RS28610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28610
old locus tag: Avi_9826
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017268587.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: thermonuclease family protein
translation: MRRIALLMAALMPSWAIAAPEGYFDLKPDGITLETGDTWVSNGERFRLYGIQSCLRGTNYTDAHGNTRDCGEASLAVLAAYIKDTQPICAPVAKANNISYVICYATVGSQRLDLGQVLVSSGYAFAALKSDGLPYHVPYSVAEQMAQQKKAGLWQFKDVQHPSITLSREANQRARKAEQ
SIO_010081: AVI_RS28610
subclass of: SO_0000673
so part of: AVI_RS28610
location: 24175..24714
location: region:24175-24714:1
so has part: feature:24175-24714:1:exon

WP_012653026.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24175-24714:1:exon

AVI_RS28615
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28615
old locus tag: Avi_9827
so part of: sequence
location: 24711..25415
location: region:24711-25415:1
so has part: feature:24711-25415:1:exon
subclass of: SO_0000010

position:24711:1
position: 24711
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25415:1
position: 25415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24711-25415:1:exon

AVI_RS28615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28615
old locus tag: Avi_9827
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011982844.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: thermonuclease family protein
translation: MKHIPLFGVIIAAIATPSMAADLQYYTPRYSGRVAPPVDSAPVRLPVFKGVVTVLDGRTLWYGSLGRGYKVRLASIDACELPQWALHPKWVDRTKNQAPMPVPCGPLAKAWLKRTIGNKVTVCTTLGYGNDGIPLAQCTVKGRDVATEMLRVGWARVDSPYANQQYLSYQHDAMAARYGMWGTYVLDMNEWRRKAVDKTLERRPLADFNLLAERKSEISPPFADARNKPKRTDR
SIO_010081: AVI_RS28615
subclass of: SO_0000673
so part of: AVI_RS28615
location: 24711..25415
location: region:24711-25415:1
so has part: feature:24711-25415:1:exon

WP_012653027.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24711-25415:1:exon

AVI_RS28620
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28620
old locus tag: Avi_9829
so part of: sequence
location: 25416..25796
location: region:25416-25796:1
so has part: feature:25416-25796:1:exon
subclass of: SO_0000010

position:25416:1
position: 25416
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25796:1
position: 25796
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25416-25796:1:exon

AVI_RS28620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28620
old locus tag: Avi_9829
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018210791.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPDIAHIATSFAIDPMAALLVAIPLSLALIVPCERLWWIHAPCALVLLVASALFQAERHLAFDSYLVGFFAFAAVCRDIPNRPLLYRVGILWFAAFSLITAVIYAASDRTDPHAIEAKISHRPIPQ
SIO_010081: AVI_RS28620
subclass of: SO_0000673
so part of: AVI_RS28620
location: 25416..25796
location: region:25416-25796:1
so has part: feature:25416-25796:1:exon

WP_012653028.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25416-25796:1:exon

AVI_RS28625
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28625
old locus tag: Avi_9830
so part of: sequence
location: 25819..26397
location: region:25819-26397:1
so has part: feature:25819-26397:1:exon
subclass of: SO_0000010

position:25819:1
position: 25819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26397:1
position: 26397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25819-26397:1:exon

AVI_RS28625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28625
old locus tag: Avi_9830
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018210792.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKALYFVAAGVAAFAMTPAARAQDASWGCQILLCAASKNPSWQGVGYCVPPMQKLISAMKKPGFSWPICEEAKAGKPGHEPFEDCPAGFQAGRVSSGRDNDSLFGGGEANVCTKTVNQCSNRGAFRTLYGNERANQQAGITIRELNSNNDNGFGNSCQVVITQPRPMRADPYYFDIPNDKGVKERHWFNLNL
SIO_010081: AVI_RS28625
subclass of: SO_0000673
so part of: AVI_RS28625
location: 25819..26397
location: region:25819-26397:1
so has part: feature:25819-26397:1:exon

WP_041700148.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25819-26397:1:exon

AVI_RS28630
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28630
old locus tag: Avi_9832
so part of: sequence
location: complement(26850..27182)
location: region:26850-27182:-1
so has part: feature:26850-27182:-1:exon
subclass of: SO_0000010

position:26850:-1
position: 26850
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27182:-1
position: 27182
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26850-27182:-1:exon

AVI_RS28630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28630
old locus tag: Avi_9832
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011971078.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MMKQGMEDGSLFEKMERHIAAQMATAKTVREWDEKRATERVSPVIYAGALAAASKEDEAARLSIVMHKPADRNESDRKLEYLAAYILTTQAALDPKEMEVIQTEADNLTV
SIO_010081: AVI_RS28630
subclass of: SO_0000673
so part of: AVI_RS28630
location: complement(26850..27182)
location: region:26850-27182:-1
so has part: feature:26850-27182:-1:exon

WP_012653031.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26850-27182:-1:exon

AVI_RS28635
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28635
old locus tag: Avi_9833
so part of: sequence
location: 27576..28208
location: region:27576-28208:1
so has part: feature:27576-28208:1:exon
subclass of: SO_0000010

position:27576:1
position: 27576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28208:1
position: 28208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27576-28208:1:exon

AVI_RS28635
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28635
old locus tag: Avi_9833
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010665990.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MTTFLGYARVSKSDGTQVHDLQRDALIAAGVDRDNIYEDSASGKKDDRPGLTSCLKALRAGDTLLVWKLDRLGRDLRHLVNLVDELTKRNIGLKVLAGEGATIDTSTANGRLVFGIFAALAEFERALIVERTKAGLEAARARGRNGGRPFKMTAAKLRLAQAAMGKPETKVGELCAELGVTRQTLYRFVGPEGNIRQDGEKLLARRKKGS
SIO_010081: AVI_RS28635
subclass of: SO_0000673
so part of: AVI_RS28635
location: 27576..28208
location: region:27576-28208:1
so has part: feature:27576-28208:1:exon

WP_012653032.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27576-28208:1:exon

AVI_RS28645
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
gene: istA
locus tag: AVI_RS28645
old locus tag: Avi_9835
so part of: sequence
location: 29463..31016
location: region:29463-31016:1
so has part: feature:29463-31016:1:exon
subclass of: SO_0000010

position:29463:1
position: 29463
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31016:1
position: 31016
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29463-31016:1:exon

AVI_RS28645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
gene: istA
locus tag: AVI_RS28645
old locus tag: Avi_9835
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010875060.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS21 family transposase
translation: MRRRKQARHTDVKDIRSILRLTFEQRLSIRAVSERLKMSKTSVSTYLLRAQEAGLGVWPLPPGLDEDDVLQQRLFRRMGRPPRDTVEPNWPKMASELKRKGVTLHLLWQEYREAHPDGYGYTWFCGRFADHESRAKPTYRSRHIAGVAMECDYAGHTIPIIDPSSGEIRSAQIYVAVLSASQLTFAYASFSQKLPDWIEANQRAFSYFGGVTKTTICDNLKSAVAKALWFEPTLNTTFAAFAEHYDTTVVPARPRHPRDKPSAEGTVLIVERWVLARLRNERFFSLVDLNIRISALIEDLNSRTMRRYGKSRRALFNEVERAQLKPLPATPFEYAEWKTAKVHPDYHVEVDKTFYSVPHGLIGKRVDVRLTYRAVEIFLDHKRVASHIRSSQRSGHVTVNEHMPKAHQRYANTTPHTLRREAAKVGINTATFIERLLSDRPHPEQGYRSAQGVLSLGRRYQSDRLELACERALVINALSYSSVANILRSGLDQAPVMTEAVKPAPPHGNIRGKTYYQ
SIO_010081: AVI_RS28645
subclass of: SO_0000673
so part of: AVI_RS28645
location: 29463..31016
location: region:29463-31016:1
so has part: feature:29463-31016:1:exon

WP_012653034.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29463-31016:1:exon

AVI_RS28650
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
gene: istB
locus tag: AVI_RS28650
old locus tag: Avi_9836
so part of: sequence
location: 31029..31805
location: region:31029-31805:1
so has part: feature:31029-31805:1:exon
subclass of: SO_0000010

position:31029:1
position: 31029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31805:1
position: 31805
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31029-31805:1:exon

AVI_RS28650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
gene: istB
locus tag: AVI_RS28650
old locus tag: Avi_9836
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012653035.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS21-like element helper ATPase IstB
translation: MLTHPTLEQMSALGLAGMATAYRELLEQPHGNDLSFDERLGLMLDREIALRTDRRLTNRLATAKLRFANASIEDIDFGSHRGLDRRNVLSLAQGAWLKANENLILTGQTGTGKTWIACAFARQAARLDHSVLYVRMPRLFEDLALARLDGRFPRLIDKLARVQLLVLDDWGTHTLNDRQRLDLLEIFEERYRRKSTLITAQLPVAAWHEMIGEATLADAILDRIVHNAHRITLEGDSMRRRKTPTLLTGAEINEINHP
SIO_010081: AVI_RS28650
subclass of: SO_0000673
so part of: AVI_RS28650
location: 31029..31805
location: region:31029-31805:1
so has part: feature:31029-31805:1:exon

WP_012653035.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31029-31805:1:exon

AVI_RS28660
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28660
old locus tag: Avi_9838
so part of: sequence
location: 32043..33274
location: region:32043-33274:1
so has part: feature:32043-33274:1:exon
subclass of: SO_0000010

position:32043:1
position: 32043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33274:1
position: 33274
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32043-33274:1:exon

AVI_RS28660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28660
old locus tag: Avi_9838
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611960.1
ribosomal slippage: true
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS3 family transposase
translation: MTSKTTNKFSPEVRARAVRMVTEHEAEHPSRWAAVSSIAAKIGCSAHTLHEWVKKAEVDSGKRAGLPSDVAEKMKALERENRELRQANEILRKASAYFCPGGARPPTEAMISFIDEHRSVLGVEPICRLLPIAPSTYYEVVAKRTDVGRLSARERNDIAMKVEIRRVFNENFQVYGVRKVWRQLQREGFDIARCTVARLMRMMGLQGIIRGKPIKTTVSDKSAPCPLDRVNRHFKAPAPNMLWLSDFTYVATWQGFVYVAFVIDAFARRIVGWRASRTAHAGFVLDALDQALHDRRPVKRGGLVHHSDRGSQYVSIRYSERLAEAGIDPSVGSVGDSYDNALAETINGLYKAEVIHRRGPWRNFEAVEFATLEWVDWFNHRRLLEPIGNIPPAEAEERYYAILDAPAMAA
SIO_010081: AVI_RS28660
subclass of: SO_0000673
so part of: AVI_RS28660
location: join(32043..32334,32334..33274)
location: region:32043-33274:1
so has part: feature:32043-32334:1:exon
so has part: feature:32334-33274:1:exon

WP_085946666.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32043-32334:1:exon

position:32334:1
position: 32334
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:32334-33274:1:exon

AVI_RS28660
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 311402
locus tag: AVI_RS28660
old locus tag: Avi_9838
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF01497
inference: COORDINATES: profile:INFERNAL:1.1.1
note: AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
SIO_010081: AVI_RS28660
subclass of: SO_0000673
so part of: AVI_RS28660
location: 32327..32443
location: region:32327-32443:1
so has part: feature:32327-32443:1:exon

position:32327:1
position: 32327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32443:1
position: 32443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32327-32443:1:exon

AVI_RS30215
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS30215
so part of: sequence
location: 33522..33902
location: region:33522-33902:1
so has part: feature:33522-33902:1:exon
subclass of: SO_0000010

position:33522:1
position: 33522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33902:1
position: 33902
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33522-33902:1:exon

AVI_RS30215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS30215
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018327735.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSDTTQSRSLQISPNHTVAFWRGLELNLNNPKQEDASVIQAQSAERPPFHVSHFRDNITVNLTVTSLLTSFVRDYDFDVTIGLTEFHCDSPGKVLVGGVVYIPTSGILGRDWKEDLLKSVWMSPVS
SIO_010081: AVI_RS30215
subclass of: SO_0000673
so part of: AVI_RS30215
location: 33522..33902
location: region:33522-33902:1
so has part: feature:33522-33902:1:exon

WP_234689410.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:33522-33902:1:exon

AVI_RS28665
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28665
old locus tag: Avi_9841
so part of: sequence
location: complement(33821..35185)
location: region:33821-35185:-1
so has part: feature:33821-35185:-1:exon
subclass of: SO_0000010

position:33821:-1
position: 33821
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:35185:-1
position: 35185
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33821-35185:-1:exon

AVI_RS28665
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28665
old locus tag: Avi_9841
EC number: 4.6.1.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014332229.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: adenylate/guanylate cyclase domain-containing protein
translation: MLAWIMDKKSSPLGNSAATREIRSASLRFVVLSILFANLVFGDGLASFTTHVIVNSVYLIVSVASVAAAVYFPRQKHLGQLFVMLDAALVVVILYEHILANPITQDHNLTTSSLVVSFILLNHVGLKLDRWLIVVFSTIVVSAWVLMLAIMAFRHHDSSPGTLLANFFNQDLGLTVSFAFTAMAVYLLARDHDRTVRQALRIEEKRMNLSRFFSPTVVADLQTASASLDLERRDAAIMFVDIRDFTSYAETASSRELACVLGEYRHIVAGAVFAYGGTVDKFIGDGVMAVFGQPKPKADDARRALACALTLTEALEEWGGKKIEKGGPRLYAGIGLHYGTVLGGVLESGFHDEFTVIGDAVNVAQRLESLASLLKSPLVVSDRIIEEVPGMFGPNDWVYTNGVSIPGRKASVNIAYIRRTANLASPAGYETGDIHTDFKRSSFQSRPRIPLVGM
SIO_010081: AVI_RS28665
subclass of: SO_0000673
so part of: AVI_RS28665
location: complement(33821..35185)
location: region:33821-35185:-1
so has part: feature:33821-35185:-1:exon

WP_236762247.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:33821-35185:-1:exon

AVI_RS28670
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28670
old locus tag: Avi_9842
so part of: sequence
location: complement(35256..35540)
location: region:35256-35540:-1
so has part: feature:35256-35540:-1:exon
subclass of: SO_0000010

position:35256:-1
position: 35256
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:35540:-1
position: 35540
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35256-35540:-1:exon

AVI_RS28670
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28670
old locus tag: Avi_9842
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018237990.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: copper-binding protein
translation: MTSFIKLTSAAVLALTMASGVFAAEFTKGTVKKVDAKAKKVTLIHEELKDLEMPAMTMVFRVKDDAMLEKLKEGASIEFVAERVEGKLTVTEIK
SIO_010081: AVI_RS28670
subclass of: SO_0000673
so part of: AVI_RS28670
location: complement(35256..35540)
location: region:35256-35540:-1
so has part: feature:35256-35540:-1:exon

WP_012653039.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:35256-35540:-1:exon

AVI_RS28675
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28675
old locus tag: Avi_9844
so part of: sequence
location: complement(35563..36042)
location: region:35563-36042:-1
so has part: feature:35563-36042:-1:exon
subclass of: SO_0000010

position:35563:-1
position: 35563
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:36042:-1
position: 36042
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35563-36042:-1:exon

AVI_RS28675
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28675
old locus tag: Avi_9844
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018325290.1
GO function: GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plastocyanin/azurin family copper-binding protein
translation: MKTLLTVVFTAFLATSALASGTHEGGHNAAMAVGEPGKKAEATQTIRVSMKETADGKMIFTPNTFKVRKGQTVVFAIKNAGELDHEFVLDQEEKVMEHKAVMEKSPDMEHDDPNAIRLAAGKSGEIIWKFTNDGTFKIACLVPGHYDAGMHGDVTVAKK
SIO_010081: AVI_RS28675
subclass of: SO_0000673
so part of: AVI_RS28675
location: complement(35563..36042)
location: region:35563-36042:-1
so has part: feature:35563-36042:-1:exon

WP_012653040.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:35563-36042:-1:exon

AVI_RS30220
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS30220
old locus tag: Avi_9845
so part of: sequence
location: complement(36182..36451)
location: region:36182-36451:-1
so has part: feature:36182-36451:-1:exon
subclass of: SO_0000010

position:36182:-1
position: 36182
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:36451:-1
position: 36451
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36182-36451:-1:exon

AVI_RS30220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS30220
old locus tag: Avi_9845
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006313095.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIKQIVISVVAVMAITPTAFAYTKLDKTASPIASIIQGHGTPGDTASSVSNPDVSVRVLASGKVERTNTRYGTVTIIDPRAESVKNNRR
SIO_010081: AVI_RS30220
subclass of: SO_0000673
so part of: AVI_RS30220
location: complement(36182..36451)
location: region:36182-36451:-1
so has part: feature:36182-36451:-1:exon

WP_012653041.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:36182-36451:-1:exon

AVI_RS28680
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28680
old locus tag: Avi_9846
so part of: sequence
location: 36644..37321
location: region:36644-37321:1
so has part: feature:36644-37321:1:exon
subclass of: SO_0000010

position:36644:1
position: 36644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37321:1
position: 37321
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36644-37321:1:exon

AVI_RS28680
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28680
old locus tag: Avi_9846
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006313094.1
GO process: GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: response regulator
translation: MKILVIEDDQTTRKYLVKGLSSAGHSIDCIGDGREGLSAGLDTRYDILIVDRMIPGLDGLNLVKSLRAASVRTPVLFLTAMSGVDDRVEGLEAGGDDYLVKPFAFSELVARINALVRRPPIAAEKTKLRVGDLEMDLVARTTSRAGQLIELLPREFSLLELLMRNEGRVLTKTMFLEKIWNFNFDPQSSVVETHISRLRAKIDKPFSTSLLHTVKNTGYTLHARG
SIO_010081: AVI_RS28680
subclass of: SO_0000673
so part of: AVI_RS28680
location: 36644..37321
location: region:36644-37321:1
so has part: feature:36644-37321:1:exon

WP_012653042.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:36644-37321:1:exon

AVI_RS28685
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28685
old locus tag: Avi_9847
so part of: sequence
location: 37308..38681
location: region:37308-38681:1
so has part: feature:37308-38681:1:exon
subclass of: SO_0000010

position:37308:1
position: 37308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38681:1
position: 38681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:37308-38681:1:exon

AVI_RS28685
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28685
old locus tag: Avi_9847
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010971022.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HAMP domain-containing sensor histidine kinase
translation: MLAGSFLKSTAVRLAIIYISLFVSAYLIANIVAYQMVVKFLDDRLNSNVMERYREIASAYEARGLNGAVQMIESHGPAVRGEETVYTLRGATDDLVAGNAKFSDVPIGLSTFRSNSQYESAPHYKLFRGPLGEYDLVVGISYGDTDQLARIVLISFGWATAIILGVGMTGASIFAHRTRRRIFVLSTIAHEIGHGDLFKRLPISSRMDEIDVLSTEVNVALTRLESSVITLKQVTTDVAHDLKTPIARTFLILEDSLQSDVPGDMKSGIEIALVELKSTSETFDAVLRIAQIESRSRTTNFRVFNLKSLVHDIYEVYEAIAVDAGYDLTLADSISDSWIEGDPDLVRQLLANLLANAMRHTQAGSNIVLSLSYNDDTIYLSVSDNGPGIPRDERERVFDRFYRLEKSRTTAGSGLGLTLVKAIVGLHGATIELLDNDPGLSVVVGFPQVKREDQQAH
SIO_010081: AVI_RS28685
subclass of: SO_0000673
so part of: AVI_RS28685
location: 37308..38681
location: region:37308-38681:1
so has part: feature:37308-38681:1:exon

WP_012653043.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:37308-38681:1:exon

AVI_RS28690
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28690
old locus tag: Avi_9848
so part of: sequence
location: complement(38799..39083)
location: region:38799-39083:-1
so has part: feature:38799-39083:-1:exon
subclass of: SO_0000010

position:38799:-1
position: 38799
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:39083:-1
position: 39083
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38799-39083:-1:exon

AVI_RS28690
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28690
old locus tag: Avi_9848
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018237990.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: copper-binding protein
translation: MTSFIKLASATVLALTMASTVFAAEFTKGTVKKVDAKAKKVTLIHEELKDLEMPAMTMVFRVKDDAMLGKLKEGASIEFVAERVEGKLTVTEIK
SIO_010081: AVI_RS28690
subclass of: SO_0000673
so part of: AVI_RS28690
location: complement(38799..39083)
location: region:38799-39083:-1
so has part: feature:38799-39083:-1:exon

WP_012653044.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:38799-39083:-1:exon

AVI_RS28695
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28695
old locus tag: Avi_9849
so part of: sequence
location: complement(39106..39585)
location: region:39106-39585:-1
so has part: feature:39106-39585:-1:exon
subclass of: SO_0000010

position:39106:-1
position: 39106
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:39585:-1
position: 39585
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:39106-39585:-1:exon

AVI_RS28695
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28695
old locus tag: Avi_9849
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018325290.1
GO function: GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plastocyanin/azurin family copper-binding protein
translation: MKTVMITLFLGALATSALASGTHEGGHNGAMAVGEPGKKAEATQTIRVSMKETDDGKMIFTPNTFKVRKGQTVVFAIKNAGELDHEFVLDQEEKVMEHKAVMEKFPDMEHDDPNAIRLAAGKSGEIIWKFTNDGTFKIACLVPGHYDAGMHGDVTVAKK
SIO_010081: AVI_RS28695
subclass of: SO_0000673
so part of: AVI_RS28695
location: complement(39106..39585)
location: region:39106-39585:-1
so has part: feature:39106-39585:-1:exon

WP_012653045.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:39106-39585:-1:exon

AVI_RS28700
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28700
old locus tag: Avi_9850
so part of: sequence
location: complement(39618..40967)
location: region:39618-40967:-1
so has part: feature:39618-40967:-1:exon
subclass of: SO_0000010

position:39618:-1
position: 39618
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:40967:-1
position: 40967
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:39618-40967:-1:exon

AVI_RS28700
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28700
old locus tag: Avi_9850
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010968681.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: copper oxidase
translation: MFNRRQMLGAGAALVSTAAWAKTSNMGLPEAALMENAETQTPVRPSSGPNYTPVVTLNGWTLPHRMNNGVKEFHLVAEPVEREMAEGMTAHLWGYNGQSPGPTIEAVEGDRVRIFVTNKLPEHTTVHWHGMILPSGMDGVGGLSQPHIPVGKTFVYEFDLVKSGTFMYHPHSDEMVQMAMGMMGFFVIHPKDETFMPVDRDFVFLLSAYDIDPGTYVPRIMEMTDFNLWAWNSRIFPGISPLVVSKDDRVRVRVGNLTMTNHPIHMHGYDFEVTCTDGGWVRPEARWPEVSIDIPVGAMRAYEFDAKYLGDWAIHCHKSHHTMNAMGHDVPTFIGVDKKTVTEKIRKIRPEYMPMGTAGMADMGEMEMEIPENTVPMMTGWGKHGPIEMGGMFSVVKVREGIAADDYTDPGWYENPPGTQAWEWTGELPDTTKAKDAKTQITPKPVKHG
SIO_010081: AVI_RS28700
subclass of: SO_0000673
so part of: AVI_RS28700
location: complement(39618..40967)
location: region:39618-40967:-1
so has part: feature:39618-40967:-1:exon

WP_012653046.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:39618-40967:-1:exon

AVI_RS28705
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28705
old locus tag: Avi_9851
so part of: sequence
location: complement(40981..42441)
location: region:40981-42441:-1
so has part: feature:40981-42441:-1:exon
subclass of: SO_0000010

position:40981:-1
position: 40981
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:42441:-1
position: 42441
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40981-42441:-1:exon

AVI_RS28705
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28705
old locus tag: Avi_9851
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019566581.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TolC family protein
translation: MSLFTFKCAATVALPLILGGCVSSTEYSATTAGFSNVSNKTAEATGKDTVWVQNRQDAQLVSGRVKTLLTKKTVDVETAVQIALLNNKGLQAAYADLGDSSADAWQSTMLVNPTVGIGLTGIGTPGLEAYRAIEGVIATNILALATHKRNVEIADAGFRKAQLAAAVRTLQLAAETRRAWITAVASWETVAQLSQAQAAADAASELAKKLGETGSMTKGGQAREHVFYAELAGQTAKARLEARLAKEELTRLMGLWGSDIDYQIPNRLPQLPKSLVKRDLIEAEALQRRVDLQMAKLDLNTTAKSYKLTEATRYVTDLEILSGFETERELEDGEKKKDTTGNVELEFVIPIFDSGKARMRKGELAYMRTANLLAEKAVNVRSEARSAYQAYRSNYDIARHYRNSVVPLRSKIEEESLLTYNGMISNTFELLADSREKVNSVLLAVNAKRDFWLAEANLAPAIYGGGAGAAGGETEVAAAAESGGGH
SIO_010081: AVI_RS28705
subclass of: SO_0000673
so part of: AVI_RS28705
location: complement(40981..42441)
location: region:40981-42441:-1
so has part: feature:40981-42441:-1:exon

WP_012653047.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:40981-42441:-1:exon

AVI_RS30225
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS30225
old locus tag: Avi_9852
so part of: sequence
location: complement(42438..42665)
location: region:42438-42665:-1
so has part: feature:42438-42665:-1:exon
subclass of: SO_0000010

position:42438:-1
position: 42438
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:42665:-1
position: 42665
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42438-42665:-1:exon

AVI_RS30225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS30225
old locus tag: Avi_9852
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004435893.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNLKILVVALPLFASGCAATLPPEVIASSEVADSTAGVRPVTYSSPVSGYTHRIPVDPKPWRNQNDAQAPEGDAS
SIO_010081: AVI_RS30225
subclass of: SO_0000673
so part of: AVI_RS30225
location: complement(42438..42665)
location: region:42438-42665:-1
so has part: feature:42438-42665:-1:exon

WP_085946668.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:42438-42665:-1:exon

AVI_RS28710
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28710
old locus tag: Avi_9853
so part of: sequence
location: complement(42755..43141)
location: region:42755-43141:-1
so has part: feature:42755-43141:-1:exon
subclass of: SO_0000010

position:42755:-1
position: 42755
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:43141:-1
position: 43141
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42755-43141:-1:exon

AVI_RS28710
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28710
old locus tag: Avi_9853
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018069533.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGSMYRIICKQLLILIRLVIIVSLAGYSLSTAAAAMHGRASDAPMVMSESMEYAGAQMSEHDHHDQVSADEDSSKVVKQECCKDFCVSIAIIANIDTWNGPVVSSIHAFMNDSDVIGELVPLHRPPNI
SIO_010081: AVI_RS28710
subclass of: SO_0000673
so part of: AVI_RS28710
location: complement(42755..43141)
location: region:42755-43141:-1
so has part: feature:42755-43141:-1:exon

WP_012653049.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:42755-43141:-1:exon

AVI_RS28715
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28715
old locus tag: Avi_9856
so part of: sequence
location: 43776..44204
location: region:43776-44204:1
so has part: feature:43776-44204:1:exon
subclass of: SO_0000010

position:43776:1
position: 43776
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44204:1
position: 44204
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43776-44204:1:exon

AVI_RS28715
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28715
old locus tag: Avi_9856
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017960478.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF305 domain-containing protein
translation: MKTIVRISLAAACALSLLTVMPAMSFAEMAYPEKCKSEMDMSKMDMKSGDMGMGDMMTDYQKASMEGMKSMQMNMMQGMMKKDADVAFVCGMIAHHMGAISMSEVELKYGDNEWAKKSAQKIIDAQTKEIAEMTDWLDKEAK
SIO_010081: AVI_RS28715
subclass of: SO_0000673
so part of: AVI_RS28715
location: 43776..44204
location: region:43776-44204:1
so has part: feature:43776-44204:1:exon

WP_012653051.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:43776-44204:1:exon

AVI_RS31680
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS31680
old locus tag: Avi_9857
so part of: sequence
location: 44220..44552
location: region:44220-44552:1
so has part: feature:44220-44552:1:exon
subclass of: SO_0000010

position:44220:1
position: 44220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44552:1
position: 44552
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44220-44552:1:exon

AVI_RS31680
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS31680
old locus tag: Avi_9857
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020049956.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: four-helix bundle copper-binding protein
translation: MHHISDEMKVCIDNCLACYRECLSMAMGHCLEMGGEHTEPKHLKLMMACAEICRTSAHFMLLGSEHHKHVCRECAEICAQCADDCERVGDMESCVATCRRCADSCAKMAA
SIO_010081: AVI_RS31680
subclass of: SO_0000673
so part of: AVI_RS31680
location: 44220..44552
location: region:44220-44552:1
so has part: feature:44220-44552:1:exon

WP_041700177.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:44220-44552:1:exon

AVI_RS28725
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28725
old locus tag: Avi_9859
so part of: sequence
location: complement(44651..46864)
location: region:44651-46864:-1
so has part: feature:44651-46864:-1:exon
subclass of: SO_0000010

position:44651:-1
position: 44651
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:46864:-1
position: 46864
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44651-46864:-1:exon

AVI_RS28725
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28725
old locus tag: Avi_9859
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014332218.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: copper-translocating P-type ATPase
translation: MDEQKSHESHHNHHQGHGAQATLVAQKSSVTYQTEGVIYTCPMHPQVKQIGPGNCPICGMTLEPEAVTTDTGPSAEYLDMKRRFWIGLVLSVPVLMLEMGGHLTNLHMVLGAQTSNWIQLVLATPVVLWAGFPFFERAWKSLVTMRLNMFTLIAMGTGVAWTYSVVATLAPGLFPATFRSADGSVAIYFEAAAVITVLVLLGQVLELQAREQTGGAIRALLDLAPKTARRVRDGVDEDIDLEMVVVGDRLRVRPGEKVPVDGSLIEGRSSVDESMITGESMPVTKEVGAKLIGGTMNQTGGFVMEAGKVGRDTMLSQIVRMVADAQRSRAPIQRLADEVSGWFVPVVIGIAIVAFAAWMIWGPEPRFAHGLVAAVAVLIIACPCALGLATPMSIMVGVGRGAGLGVLIKNAEALERFEKVDTLVVDKTGTLTEGKPKVTSMAAINGFTEPELLRLAATLERASEHPLATAIVNAATERQLVLGVAEDFDSPVGKGVTGSVDGRRLIIGSHRIMEEAHIDVSALTSQAEALRGEGATVIFVAVDGDLGGLLAIADPIKTTTPDAVQALLKAGVRVVMLTGDNKTTAAAVARKLGITEVEAEILPEDKSEIVKRLREEGRIVAMAGDGVNDAPALAAADVGIAMGTGTDVAIESAGVTLLKGDLQGIVRARELSQATMSNIRQNLFFAFIYNAAGVPIAAGLLYPSFGLLLSPIIAAAAMALSSVSVIGNALRLRSVRI
SIO_010081: AVI_RS28725
subclass of: SO_0000673
so part of: AVI_RS28725
location: complement(44651..46864)
location: region:44651-46864:-1
so has part: feature:44651-46864:-1:exon

WP_012653053.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:44651-46864:-1:exon

AVI_RS28730
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28730
old locus tag: Avi_9862
so part of: sequence
location: 47535..48107
location: region:47535-48107:1
so has part: feature:47535-48107:1:exon
subclass of: SO_0000010

position:47535:1
position: 47535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:48107:1
position: 48107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:47535-48107:1:exon

AVI_RS28730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28730
old locus tag: Avi_9862
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015241522.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cytochrome c
translation: MALKARVTKLATSALSIVIFGTVISLAIAQNAAPGKVVQRQDGMKAMANAAKSIDAMFKDLSPYDARAFKAAAETILAHSGPSLSALFDGSGATPGSKASTIIETDRQHFDKLAKDLGIYASALSVAADRNPDRLGPETRMQIGDAMGGGPLARKVDAARDAASMPAEHAFHMMLQTCTSCHATFRVKTD
SIO_010081: AVI_RS28730
subclass of: SO_0000673
so part of: AVI_RS28730
location: 47535..48107
location: region:47535-48107:1
so has part: feature:47535-48107:1:exon

WP_049777557.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:47535-48107:1:exon

AVI_RS28735
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
gene: cueR
locus tag: AVI_RS28735
old locus tag: Avi_9863
so part of: sequence
location: complement(48119..48562)
location: region:48119-48562:-1
so has part: feature:48119-48562:-1:exon
subclass of: SO_0000010

position:48119:-1
position: 48119
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:48562:-1
position: 48562
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:48119-48562:-1:exon

AVI_RS28735
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
gene: cueR
locus tag: AVI_RS28735
old locus tag: Avi_9863
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012653056.1
GO function: GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO process: GO:0006878 - cellular copper ion homeostasis [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Cu(I)-responsive transcriptional regulator
translation: MNIGEASKASGVSTKMIRYYEQIKLITPAHRTESSYRTYGDSDVHTLQFIRRARDLGFSVEQMKTLLALWRDRSRASSDVKAIALEHIAELERKAAAIAAMTKTLKHLASHCHGDDRPDCPIIEGFADTLENIGPGMPSKFGLANVV
SIO_010081: AVI_RS28735
subclass of: SO_0000673
so part of: AVI_RS28735
location: complement(48119..48562)
location: region:48119-48562:-1
so has part: feature:48119-48562:-1:exon

WP_012653056.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:48119-48562:-1:exon

AVI_RS28740
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28740
old locus tag: Avi_9864
so part of: sequence
location: complement(48578..51058)
location: region:48578-51058:-1
so has part: feature:48578-51058:-1:exon
subclass of: SO_0000010

position:48578:-1
position: 48578
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:51058:-1
position: 51058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:48578-51058:-1:exon

AVI_RS28740
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28740
old locus tag: Avi_9864
EC number: 7.2.2.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018328306.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: heavy metal translocating P-type ATPase
translation: MTAIPKIEASKTLPLPTDFGIEGMSCASCVVRVEKAIAAVPGVASAIVNLATERATVTYNEVVPTEAVLQAIEKAGYEPKLETRELGVEGMTCASCVSRVEKALKSVQGVRQATVNLATEKATVRVVSGTSTLVLEDAVRAAGYEVRRITAVRSTDNDEDRRDREANRLTMSLALSAALTLPLFVLEMGSHFIPALHDWIMVNIGMGNNLVIQFVLATAVLFGPGLRFFRKGVPNLLHWTPDMNSLVVLGTSAAWGYSVVATFLPGVLPSGTANVYYEAAAVIVTLILLGRYLEARAKGKTSQAIKHLIGLQAKTAHVKRGEDFVEIEIGAVSLGDIVRIRPGEKVPVDGRLVDGGSYVDESMITGEPVPVKKSAGDDVVGGTINKTGSFTFEATKIDADTLLAQIIKMVEAAQGSKLPIQALVDRVTGWFVPAVIAAAALTFLAWLLFGPSPALTFALINAVAVLIIACPCAMGLATPTSIMVGTGRAAELGILFRKGEALQTLRDVDVVALDKTGTLTKGKPELTDFVVSDGFDRAETLRLVAGLETQSEHPIAEAIVAAAKADGLSLSDVSDFEAAPGYGVSGRIDGRTVLVGADRSMTKSGIDVSAFSAQAAALGDAGKSPLYAAIDGRLAAIIAVADPIKDTTPQAIKTLHALGLKVAMITGDNRRTAQAIARQLDIDEVVAEVLPDGKVEAVRKLRSGGRKVAFIGDGINDAPALSEADIGLAVGTGTDIAIESADVVLMSGDLNGVPRAIAISKATIRNIRQNLFWAFAYNVSLVPVAAGVLYPVNGTLLSPILAAGAMGLSSVFVLANALRLRRFKTT
SIO_010081: AVI_RS28740
subclass of: SO_0000673
so part of: AVI_RS28740
location: complement(48578..51058)
location: region:48578-51058:-1
so has part: feature:48578-51058:-1:exon

WP_012653057.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:48578-51058:-1:exon

AVI_RS28745
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28745
old locus tag: Avi_9865
so part of: sequence
location: complement(51211..51414)
location: region:51211-51414:-1
so has part: feature:51211-51414:-1:exon
subclass of: SO_0000010

position:51211:-1
position: 51211
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:51414:-1
position: 51414
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:51211-51414:-1:exon

AVI_RS28745
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28745
old locus tag: Avi_9865
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018324858.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: heavy-metal-associated domain-containing protein
translation: MYEFNIQNMTCGHCKGTVEKAIKAADPAAVATVDLASKSATVETTLDPAIIGKAIQDAGYPVSYTTR
SIO_010081: AVI_RS28745
subclass of: SO_0000673
so part of: AVI_RS28745
location: complement(51211..51414)
location: region:51211-51414:-1
so has part: feature:51211-51414:-1:exon

WP_012653058.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:51211-51414:-1:exon

AVI_RS28750
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28750
old locus tag: Avi_9866
so part of: sequence
location: 51619..51993
location: region:51619-51993:1
so has part: feature:51619-51993:1:exon
subclass of: SO_0000010

position:51619:1
position: 51619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:51993:1
position: 51993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:51619-51993:1:exon

AVI_RS28750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28750
old locus tag: Avi_9866
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRFVKVIYRLLFVTAILGIVIGPMSVGAADSVMAASLPVVMDGMAGMDMPDDLPCCPDEQPDKPDCACKSCPFAVICTTMIVGQLATSHSWSLNIGWVAHRFLMPPHGELASSLVYPPVRPPRV
SIO_010081: AVI_RS28750
subclass of: SO_0000673
so part of: AVI_RS28750
location: 51619..51993
location: region:51619-51993:1
so has part: feature:51619-51993:1:exon

WP_041700179.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:51619-51993:1:exon

AVI_RS28755
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28755
old locus tag: Avi_9867
so part of: sequence
location: 52116..52520
location: region:52116-52520:1
so has part: feature:52116-52520:1:exon
subclass of: SO_0000010

position:52116:1
position: 52116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:52520:1
position: 52520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:52116-52520:1:exon

AVI_RS28755
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28755
old locus tag: Avi_9867
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006312259.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: FixH family protein
translation: MRNFTFNARSPLFAGAFLLGTANASLAGAQDYEFQAVQTEIKQGPAATVSVRLIDKRTGKTVPDAVIFTTRMDMAPDGMETMTTKVDLATSGEPGVYAFTTNLSMEGGWRFQVAAKVQGEPETVKGEVVLKAVP
SIO_010081: AVI_RS28755
subclass of: SO_0000673
so part of: AVI_RS28755
location: 52116..52520
location: region:52116-52520:1
so has part: feature:52116-52520:1:exon

WP_012653060.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:52116-52520:1:exon

AVI_RS28760
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28760
old locus tag: Avi_9868
so part of: sequence
location: 52517..53944
location: region:52517-53944:1
so has part: feature:52517-53944:1:exon
subclass of: SO_0000010

position:52517:1
position: 52517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:53944:1
position: 53944
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:52517-53944:1:exon

AVI_RS28760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28760
old locus tag: Avi_9868
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007788017.1
GO function: GO:0005215 - transporter activity [Evidence IEA]
GO process: GO:0006810 - transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: efflux RND transporter periplasmic adaptor subunit
translation: MNIPRIIATLSLAAIVGGGGYWAGKYDVGAFFQGGVKGTGMAAEAEPRREGTGAVIYYRHPDGLAEYSATPKNTDDGRLFVPVRASEDISLGPSGAVAPSPDTASVSLERKILYYRNPMGLPDTSKVPKKDSMGMDYLPVYDGDVSDSSTVKVPLGKLQRTGVRTALAEVTTVSRKIRVPGTVTLDERRVSIISMRADAFVEDVANVTTGDAITKGENLFQFYSKEIATAGAEYAAEMRNGAKSNPDSGAALRLKNLGVPTATIGSIASERKVPQSIAYTSPRDGVVLERMAVSGMMAEAGDILFRIADVSRVWVIADVPEYELSAVRKGAVVSVIVRNLPGTTFKGTVDLIYPEVQMQTRTTKVRIELPNPSGQLMSNMYAEVEIEAGSGNPVVAVPNSSVIDTGDRQLVFIDKGEGRFEPMNVALGVRGEDMTEITKGIAAGDRVVVSANFLLDAESNLNAALSALTADEVKP
SIO_010081: AVI_RS28760
subclass of: SO_0000673
so part of: AVI_RS28760
location: 52517..53944
location: region:52517-53944:1
so has part: feature:52517-53944:1:exon

WP_012653061.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:52517-53944:1:exon

AVI_RS28765
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28765
old locus tag: Avi_9869
so part of: sequence
location: 53941..57102
location: region:53941-57102:1
so has part: feature:53941-57102:1:exon
subclass of: SO_0000010

position:53941:1
position: 53941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:57102:1
position: 57102
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:53941-57102:1:exon

AVI_RS28765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28765
old locus tag: Avi_9869
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007788016.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CusA/CzcA family heavy metal efflux RND transporter
translation: MIANIISWSARNLVLIFVGATLSIAGGVYALRTLPLDAIPDLSDVQVIVFTDYPGQAPQVVEDQVTYPLTTSMLTVPKSKVVRGFSFFGVSFVYVIFEDGTDPYWARSRVLEYLNAAASRLPDEVSPSLGPDATGVGWVYQYAVVAKELSLAELRSLQDWVVRFAVSKSEGVAEVASVGGFVKQYSIVVDPARLKAQSVSLSDIANAVRSSNRDVGGRTIELSEFEFMVRGKGYLQGIKDIENIVLKTNAGVPLRLSDVARVELVPDERRGITELNGEGEVASGIVLQRDGANALTVIENAKESLAAVQNSLPAGTEIKPVYDRSTLIEAAIETLKATLIEESIVVALVTIAFLLHVRSALVAIIMLPIGILMAFMAMRALGLGSNIMSLGGIAIAIGAMIDAAIVMIENAHKHLERAPPGKPRTEVLIEAASEVGPALFFSLLIITVSFLPIFTLESQEGRLFGPLAFTKTFAMAAAALLSITLVPALMILFVRGRIVPEHKNPLNRLLIWIYRPVIAGVLKAKSLTILAAIVILAVTVWPVQHIGSEFMPSLDEGTLMYMPTTLPGLSVTKAAELMQTQDRIIKSFPEVETVFGKAGRALTATDPAPTEMFETIITLKPKSEWRPGVTSDSLKQEMDAALQFPGVSNAWTMPIRARIDMLSTGIRTPVGVKVYGTELKEMEKVARDIETVLKTVPGTSSAYAERVIGGYYLDIIPDRMALGRYGLSIDDVQDVIGMALGSEVVTSTVEGRERYGVAIRYPRAFRSDPQSIASDVQVSLPGGGTVPLGEVAKVKLTRGATTIRTENGQLALYIFVDIANRDLGGYVAEAQASVAASVEMPPGYSVAWSGQFEYLERAKARLMIVVPLTLALIFLLLYLNFKALTETLIVMLSLPFALVGGIWMMWWLSFNASVAVAVGFIALAGVAAETGVIMLIYLDHALRDEKAKCEVEGRIFGRQDLNRAIMFGAVERVRPKMMTVVAIMAGLVPILWSTGAGSEIMQRIAVPMIGGMVSSTLLTLIVIPAVYGLVKGYGLTGAREEKQVPASLAANRI
SIO_010081: AVI_RS28765
subclass of: SO_0000673
so part of: AVI_RS28765
location: 53941..57102
location: region:53941-57102:1
so has part: feature:53941-57102:1:exon

WP_012653062.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:53941-57102:1:exon

AVI_RS28770
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28770
old locus tag: Avi_9870
so part of: sequence
location: 57117..57572
location: region:57117-57572:1
so has part: feature:57117-57572:1:exon
subclass of: SO_0000010

position:57117:1
position: 57117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:57572:1
position: 57572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:57117-57572:1:exon

AVI_RS28770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28770
old locus tag: Avi_9870
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013850498.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF411 domain-containing protein
translation: MKRREFLWTLAAIGALPVVGKARAAGESMVVYKDPNCGCCRAWADAMTKAGFAVKAEDVDDINVVKDRFKVPGDLRGCHTAVVAGYYLEGHVPLEAVTRLLAEKPDIAGLAVPGMPLGSLGMGGSPSASYDVMSVGKDGASTLYQAVRSKG
SIO_010081: AVI_RS28770
subclass of: SO_0000673
so part of: AVI_RS28770
location: 57117..57572
location: region:57117-57572:1
so has part: feature:57117-57572:1:exon

WP_012653063.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:57117-57572:1:exon

AVI_RS28775
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28775
old locus tag: Avi_9871
so part of: sequence
location: complement(57784..58347)
location: region:57784-58347:-1
so has part: feature:57784-58347:-1:exon
subclass of: SO_0000010

position:57784:-1
position: 57784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:58347:-1
position: 58347
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:57784-58347:-1:exon

AVI_RS28775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28775
old locus tag: Avi_9871
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017171841.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: restriction endonuclease
translation: MQPSEIMILAAALALFAAALLLRRLLRPKAKERRHRRKQDQARRVLAKINTIPLMPQRLAYLRKIDPLTFEELLLEAFERRGHVVRRNASYSGDGGLDGSVVIEGETYLLQAKRYGKHINRAHVAAFSAVLAARDCSGIFIHTGRTGAGAKDVAAANPNLTIVNGQRLLDFLNTGDIERSTGTHSRN
SIO_010081: AVI_RS28775
subclass of: SO_0000673
so part of: AVI_RS28775
location: complement(57784..58347)
location: region:57784-58347:-1
so has part: feature:57784-58347:-1:exon

WP_012653064.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:57784-58347:-1:exon

AVI_RS28780
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28780
old locus tag: Avi_9872
so part of: sequence
location: complement(58507..58983)
location: region:58507-58983:-1
so has part: feature:58507-58983:-1:exon
subclass of: SO_0000010

position:58507:-1
position: 58507
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:58983:-1
position: 58983
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:58507-58983:-1:exon

AVI_RS28780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28780
old locus tag: Avi_9872
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015241489.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MAGPTIENWVEQLGLQLVQDPDLEKPVYRKPYHGKVHLNAELDDKISTSIREARDKRSLSRSKIAPLLGLSNAVYHRYETSVSRLTVSRLIHLCEVLDATPEEILAPAAPHLWGENQEHSRLLQNTISEIRQLDTEGLERIFKLVVSMEKKPTPTAGR
SIO_010081: AVI_RS28780
subclass of: SO_0000673
so part of: AVI_RS28780
location: complement(58507..58983)
location: region:58507-58983:-1
so has part: feature:58507-58983:-1:exon

WP_012653065.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:58507-58983:-1:exon

AVI_RS30880
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS30880
so part of: sequence
location: 59367..59642
location: region:59367-59642:1
so has part: feature:59367-59642:1:exon
subclass of: SO_0000010

position:59367:1
position: 59367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:59642:1
position: 59642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59367-59642:1:exon

AVI_RS30880
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS30880
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDIFIPAVIALAGYVWLVLRANRTFHAIRKERFEHTNAAGVLQFDTYEELRKFEGREASNQFWINVAAVPGGVIPLAAIFAIIASIAEMSS
SIO_010081: AVI_RS30880
subclass of: SO_0000673
so part of: AVI_RS30880
location: 59367..59642
location: region:59367-59642:1
so has part: feature:59367-59642:1:exon

WP_071207580.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:59367-59642:1:exon

AVI_RS28790
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28790
old locus tag: Avi_9874
so part of: sequence
location: 59961..60419
location: region:59961-60419:1
so has part: feature:59961-60419:1:exon
subclass of: SO_0000010

position:59961:1
position: 59961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:60419:1
position: 60419
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59961-60419:1:exon

AVI_RS28790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28790
old locus tag: Avi_9874
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015241490.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF3846 domain-containing protein
translation: MTKTVTVYLLDPEAGTIQTVEIDARSAFAQTYTLIGCELVQVVPFDSHHVLVIDEDGLQDGLTSFTIADGYPQPLAGKIVLVGAQNGEHFTPLQMTIEDAAKLFTVCKPVLDPVFASIDETTMKGVILAGFLTGLQTRITRTMPTVMAGVKK
SIO_010081: AVI_RS28790
subclass of: SO_0000673
so part of: AVI_RS28790
location: 59961..60419
location: region:59961-60419:1
so has part: feature:59961-60419:1:exon

WP_041700154.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:59961-60419:1:exon

AVI_RS28795
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28795
old locus tag: Avi_9875
so part of: sequence
location: 60416..61432
location: region:60416-61432:1
so has part: feature:60416-61432:1:exon
subclass of: SO_0000010

position:60416:1
position: 60416
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:61432:1
position: 61432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:60416-61432:1:exon

AVI_RS28795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28795
old locus tag: Avi_9875
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015241491.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSITVAFFEREAADRVLGIVADTFAAKIAVKDIEHNFSWLTHSPERRADRELEALAQRLNDFANYAMDLWTEAATPIPGPEIEAFTRRHIDVTRKYWAAESRCANWMITGPARFPVARNEKRMRVSDARRADIAAHAENARKAIRRKAYPHGADGEPIRSGDPEALQRIASRIEDLALSIDRMKRANAIIRRMEKDHASEADILARVVSETGLAEEQAARGITIAPWQSRRGFCTTNTRAELRRMQQRLARLAAMKKRGDRSEEVETEAGAVEVKENTEIARIQMIFPGKPDEEARRILKSHGFRWSPSQGAWQRHLNEAGRYAVKTVLSKISGASAA
SIO_010081: AVI_RS28795
subclass of: SO_0000673
so part of: AVI_RS28795
location: 60416..61432
location: region:60416-61432:1
so has part: feature:60416-61432:1:exon

WP_080517093.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:60416-61432:1:exon

AVI_RS28800
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28800
so part of: sequence
location: 61461..61910
location: region:61461-61910:1
so has part: feature:61461-61910:1:exon
subclass of: SO_0000010

position:61461:1
position: 61461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:61910:1
position: 61910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:61461-61910:1:exon

AVI_RS28800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28800
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015241492.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTEQIFTVMEFCGKGDPMFGGNAADWGLYTTEDKGHAFMCAADAQRRDLVKAYFPTEKEGKAAGEGASHRNGLISVLPVPHDARIPVAQLRWIVGNMHVGTSDEDLTADIVARSESWPLGQYADYVAQACAYALASHRANQRLYAHFRF
SIO_010081: AVI_RS28800
subclass of: SO_0000673
so part of: AVI_RS28800
location: 61461..61910
location: region:61461-61910:1
so has part: feature:61461-61910:1:exon

WP_041700156.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:61461-61910:1:exon

AVI_RS30885
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS30885
so part of: sequence
location: 61920..62255
location: region:61920-62255:1
so has part: feature:61920-62255:1:exon
subclass of: SO_0000010

position:61920:1
position: 61920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:62255:1
position: 62255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:61920-62255:1:exon

AVI_RS30885
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS30885
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTHSVCKRCGGGFWESEKGAREEDLCDECEGKVAPKRAARRSVEVFDIPSGLGGSHTVEIVSELQGGMVRLRVWYGRATATGWEPWKDWDGYRFDADRAELKNKRTMPLFK
SIO_010081: AVI_RS30885
subclass of: SO_0000673
so part of: AVI_RS30885
location: 61920..62255
location: region:61920-62255:1
so has part: feature:61920-62255:1:exon

WP_041700158.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:61920-62255:1:exon

AVI_RS28810
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28810
old locus tag: Avi_9879
so part of: sequence
location: 62304..62609
location: region:62304-62609:1
so has part: feature:62304-62609:1:exon
subclass of: SO_0000010

position:62304:1
position: 62304
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:62609:1
position: 62609
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:62304-62609:1:exon

AVI_RS28810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28810
old locus tag: Avi_9879
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015241493.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSRYPITVKSALQTDENAVIGFDQPLRTYFLQAFPDEATDACALWLGGFLEEYPSLESIINAARAEGYDVHGLTHDVIIALTKEGGTPTPPSIAERLGIVR
SIO_010081: AVI_RS28810
subclass of: SO_0000673
so part of: AVI_RS28810
location: 62304..62609
location: region:62304-62609:1
so has part: feature:62304-62609:1:exon

WP_012653070.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:62304-62609:1:exon

AVI_RS28815
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28815
so part of: sequence
location: 62770..63030
location: region:62770-63030:1
so has part: feature:62770-63030:1:exon
subclass of: SO_0000010

position:62770:1
position: 62770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:63030:1
position: 63030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:62770-63030:1:exon

AVI_RS28815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28815
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MSRFEPLTVEIGRRLEIVRQDAGSSPDKFASSLNVSQELYQAYADGEAEMPMAVMRALYDVHGVNPAWLLAGEQDRYMPKGPVAAQ
SIO_010081: AVI_RS28815
subclass of: SO_0000673
so part of: AVI_RS28815
location: 62770..63030
location: region:62770-63030:1
so has part: feature:62770-63030:1:exon

WP_041700159.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:62770-63030:1:exon

AVI_RS28820
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28820
so part of: sequence
location: complement(63098..63280)
location: region:63098-63280:-1
so has part: feature:63098-63280:-1:exon
subclass of: SO_0000010

position:63098:-1
position: 63098
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:63280:-1
position: 63280
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:63098-63280:-1:exon

AVI_RS28820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28820
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MMSLPAIIGISAGAAGVVAFSRKKQPQSLLKKIGVFFLAFIGTLFVLLAINFAIFYAAQT
SIO_010081: AVI_RS28820
subclass of: SO_0000673
so part of: AVI_RS28820
location: complement(63098..63280)
location: region:63098-63280:-1
so has part: feature:63098-63280:-1:exon

WP_041700161.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:63098-63280:-1:exon

AVI_RS28825
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28825
old locus tag: Avi_9881
so part of: sequence
location: 63491..63730
location: region:63491-63730:1
so has part: feature:63491-63730:1:exon
subclass of: SO_0000010

position:63491:1
position: 63491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:63730:1
position: 63730
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:63491-63730:1:exon

AVI_RS28825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28825
old locus tag: Avi_9881
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003528894.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system VapB family antitoxin
translation: MPLYIKDPEVDTLTEELIRLTKTSKVDAVKTALRREIASRKGSLPMRERLAKSLAMARDAGPFAPGDHKRETDEMWGED
SIO_010081: AVI_RS28825
subclass of: SO_0000673
so part of: AVI_RS28825
location: 63491..63730
location: region:63491-63730:1
so has part: feature:63491-63730:1:exon

WP_012653071.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:63491-63730:1:exon

AVI_RS28830
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28830
old locus tag: Avi_9882
so part of: sequence
location: 63730..64164
location: region:63730-64164:1
so has part: feature:63730-64164:1:exon
subclass of: SO_0000010

position:64164:1
position: 64164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:63730-64164:1:exon

AVI_RS28830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28830
old locus tag: Avi_9882
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010970262.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system VapC family toxin
translation: MLFVDASVAVAILAGEDDAGELMHRLEQHDGPFYVSAVVRMEASLSLTRRMAEATGRDRPATPDMLATARRMVDQFFADLEAKEAMISGDVGTKALDAAQQFGKIVNHPAKLNMGDCFTYACARAYRTKIAYKGNDFAETDLGW
SIO_010081: AVI_RS28830
subclass of: SO_0000673
so part of: AVI_RS28830
location: 63730..64164
location: region:63730-64164:1
so has part: feature:63730-64164:1:exon

WP_012653072.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:63730-64164:1:exon

AVI_RS31330
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS31330
so part of: sequence
location: complement(64503..64670)
location: region:64503-64670:-1
so has part: feature:64503-64670:-1:exon
subclass of: SO_0000010

position:64503:-1
position: 64503
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:64670:-1
position: 64670
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:64503-64670:-1:exon

AVI_RS31330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS31330
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRKEAEARQAILQYRPQGESEVNDKLTYVAAYILKTGAVLTPQEMDLLLGAPRRM
SIO_010081: AVI_RS31330
subclass of: SO_0000673
so part of: AVI_RS31330
location: complement(64503..64670)
location: region:64503-64670:-1
so has part: feature:64503-64670:-1:exon

WP_156753219.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:64503-64670:-1:exon

AVI_RS28840
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28840
old locus tag: Avi_9887
so part of: sequence
location: 64947..66536
location: region:64947-66536:1
so has part: feature:64947-66536:1:exon
subclass of: SO_0000010

position:64947:1
position: 64947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:66536:1
position: 66536
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:64947-66536:1:exon

AVI_RS28840
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28840
old locus tag: Avi_9887
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003537746.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEKNGKFFIAPPKDGRDFKELFKDLAAAGAGRPLDSDGFPSGPWTPELLAEAISQIDSNHVGVDLRTVQLWFQENDKGVSAANIRWLARVFGCDDPLATSEWQMELIAAQSRLAAKRRGSRKPGNRPNPIPDLPLAETESVEIVYAAQAYAQTQKPRFSLGRTSEAVFTRGSPLNLPASVFAGASGLGFLAYIMGIHSAIYTRADGIVKQVGFLWAPNWTFLFMVLLPVFFVLVTELLVYWKNNGRMVLAGHGDRLQSGRDWEHHLKAYSYSYWAVFVICIPFAGIFQWIAVDLMPLLKGKGDYAISWGTLALIRPEVISVPMSIVFTGLAYLYMCLCFYLLFAGLILLHAILHDLWTIEGVTQLHPDEFQREAGAIALGVMRGIFRCTTVGILVAICMKLQSAYLASNGKDIVTWLLNDSSVVIDGYANGRNGFHYRMPTHFSSLLVAISSCVGFVIGSVRFARRFHMPLWRMSVVVALLFATYMLIDAFDGFSILLGIATLLATYALFDPEFGRWRADEIESDQRVS
SIO_010081: AVI_RS28840
subclass of: SO_0000673
so part of: AVI_RS28840
location: 64947..66536
location: region:64947-66536:1
so has part: feature:64947-66536:1:exon

WP_012653074.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:64947-66536:1:exon

AVI_RS28845
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28845
old locus tag: Avi_9888
so part of: sequence
location: 66526..67527
location: region:66526-67527:1
so has part: feature:66526-67527:1:exon
subclass of: SO_0000010

position:66526:1
position: 66526
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:67527:1
position: 67527
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:66526-67527:1:exon

AVI_RS28845
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28845
old locus tag: Avi_9888
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017958563.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: alpha/beta hydrolase
translation: MFHSWLDGWDERRAQRGDEAKKTTPFVIDADRAFPGAQSTASLEEFCLLAGKAASDPGFFERPSGSVEGFERKDGWLKFPSDIATDVDENNTVWAKITESASCKKALVIFHHWNADARNAQIATLFSRRGITVIEIAMPYHFERSRPGSLYADYILSANLGRTLQSMRQAVCDGRKVIGWLKSEGYREISVLGMSLGSWVAGLITAHEPAVSKASLFLTAGSLADMVWTGRATRSIHDSLAPHIELDDLRRAWGPLNLENYAQNLARPDLRLHIVLAKRDTVVLPGLSSRFMQKLKNVGASPHILELNCGHYSLGIPPYILRAGTSLNSFLSR
SIO_010081: AVI_RS28845
subclass of: SO_0000673
so part of: AVI_RS28845
location: 66526..67527
location: region:66526-67527:1
so has part: feature:66526-67527:1:exon

WP_012653075.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:66526-67527:1:exon

AVI_RS30890
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS30890
so part of: sequence
location: 68010..68207
location: region:68010-68207:1
so has part: feature:68010-68207:1:exon
subclass of: SO_0000010

position:68010:1
position: 68010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:68207:1
position: 68207
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:68010-68207:1:exon

AVI_RS30890
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS30890
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKTLVTFCQKTGRRLRQFINRQIAKLAHKGHLKFSIAIMLPLLAKVEFTYQVELDGKARNANKPQ
SIO_010081: AVI_RS30890
subclass of: SO_0000673
so part of: AVI_RS30890
location: 68010..68207
location: region:68010-68207:1
so has part: feature:68010-68207:1:exon

WP_041700165.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:68010-68207:1:exon

AVI_RS30895
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS30895
pseudo: true
so part of: sequence
location: complement(<68252..68478)
location: region:68252-68478:-1
so has part: feature:68252-68478:-1:exon
subclass of: SO_0000010

position:68252:-1
position: 68252
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:68478:-1
position: 68478
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:68252-68478:-1:exon

AVI_RS30895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS30895
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018099083.1
note: frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: ATP-dependent DNA ligase
SIO_010081: AVI_RS30895
subclass of: SO_0000673
so part of: AVI_RS30895
location: complement(<68252..68478)
location: region:68252-68478:-1
so has part: feature:68252-68478:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:68252-68478:-1:exon

AVI_RS28860
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28860
so part of: sequence
location: 68662..68871
location: region:68662-68871:1
so has part: feature:68662-68871:1:exon
subclass of: SO_0000010

position:68662:1
position: 68662
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:68871:1
position: 68871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:68662-68871:1:exon

AVI_RS28860
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28860
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTSRQQLLAKVHDIADPCEELRQGFRALATDPSTPPDVQQASLDLAEAIEKVFQIAHYIMKSETSASGR
SIO_010081: AVI_RS28860
subclass of: SO_0000673
so part of: AVI_RS28860
location: 68662..68871
location: region:68662-68871:1
so has part: feature:68662-68871:1:exon

WP_041700167.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:68662-68871:1:exon

AVI_RS28870
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28870
old locus tag: Avi_9896
so part of: sequence
location: 69538..71475
location: region:69538-71475:1
so has part: feature:69538-71475:1:exon
subclass of: SO_0000010

position:69538:1
position: 69538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:71475:1
position: 71475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:69538-71475:1:exon

AVI_RS28870
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28870
old locus tag: Avi_9896
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015241538.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParB/RepB/Spo0J family partition protein
translation: MTKIVSIPLSKLDTDPKNVRKTYKAEGVESLAASILANGVVQNIVVRKAPKGRYFVTAGGRRRAALLLLIERGQISADYAVNAIVKTADEATELSLTENVQREEMHPADQYVAFQAMVNEGKAIADIAARFGVTEIIVRRRLALAKVSPVLLDLFRNDEMTFEQLTAFTVCDDHERQEQVWESLDRWSRDVSRIKSALMTDEIAGTDKRITFLGGLDVYEQAGGAVRRDLFDAQGGGFALDVILVEKLVSEKLAAVAEPFLSQGWKFVETYMQRPDWIFGVPRVYPKQIELSPDEQSERLRLCAEHDELVELMDRDEGEESHSERINAISARLDELDSMQEVFSDEDKAKSGVVVSLDYYGRPDIAVGIRKPGDDEQSEQVETEDDDNGSEASEKVEEIGPPKIVHSAVLVEDLTAQKTAALRVELANNPDVALVSVVHAMLLDLVYPGTYGRSRGMTALQIAVTHERLQGSMKRPDASRATEEWDRIAENFGYHLPGEPEDLWEHLLDKPQSELLGLLAYAAAHTLNAVETKHSFRKDACAHADQIGRTLKVEMTDWFETTAESYFSSLNRAGIQAAVAEVKGADFASRVASMKKAEAAAFAETAIKGSNWLPSPVRIAPDQKAENEQTEPRSEDEQPFPIAAE
SIO_010081: AVI_RS28870
subclass of: SO_0000673
so part of: AVI_RS28870
location: 69538..71475
location: region:69538-71475:1
so has part: feature:69538-71475:1:exon

WP_012653077.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:69538-71475:1:exon

AVI_RS30905
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS30905
so part of: sequence
location: 71542..71721
location: region:71542-71721:1
so has part: feature:71542-71721:1:exon
subclass of: SO_0000010

position:71542:1
position: 71542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:71721:1
position: 71721
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:71542-71721:1:exon

AVI_RS30905
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS30905
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFDQVPDPTKAAECCCQLIQAYLSDPEHVDWSDVQTAVNTALEAFNLPPTFFEEQAQPA
SIO_010081: AVI_RS30905
subclass of: SO_0000673
so part of: AVI_RS30905
location: 71542..71721
location: region:71542-71721:1
so has part: feature:71542-71721:1:exon

WP_041700169.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:71542-71721:1:exon

AVI_RS28880
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28880
old locus tag: Avi_9898
so part of: sequence
location: complement(72227..73458)
location: region:72227-73458:-1
so has part: feature:72227-73458:-1:exon
subclass of: SO_0000010

position:72227:-1
position: 72227
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:73458:-1
position: 73458
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:72227-73458:-1:exon

AVI_RS28880
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28880
old locus tag: Avi_9898
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611960.1
ribosomal slippage: true
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS3 family transposase
translation: MTSKTTNKFSPEVRARAVRMVTEHEAEHPSRWAAVSSIAAKIGCSAHTLHEWVKKAEVDSGKRAGLPSDVAEKMKALERENRELRQANEILRKASAYFCPGGARPPTEAMISFIDEHRSVLGVEPICRLLPIAPSTYYEVVAKRTDVGRLSARERNDIAMKVEIRRVFNENFQVYGVRKVWRQLQREGFDIARCTVARLMRMMGLQGIIRGKPIKTTVSDKSAPCPLDRVNRHFKAPAPNMLWLSDFTYVATWQGFVYVAFVIDAFARRIVGWRASRTAHAGFVLDALDQALHDRRPVKRGGLVHHSDRGSQYVSIRYSERLAEAGIDPSVGSVGDSYDNALAETINGLYKAEVIHRRGPWRNFEAVEFATLEWVDWFNHRRLLEPIGNIPPAEAEERYYAILDAPAMAA
SIO_010081: AVI_RS28880
subclass of: SO_0000673
so part of: AVI_RS28880
location: complement(join(72227..73167,73167..73458))
location: region:72227-73458:-1
so has part: feature:73167-73458:-1:exon
so has part: feature:72227-73167:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:73167-73458:-1:exon

position:73167:-1
position: 73167
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:72227-73167:-1:exon

AVI_RS28880
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 311402
locus tag: AVI_RS28880
old locus tag: Avi_9898
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF01497
inference: COORDINATES: profile:INFERNAL:1.1.1
note: AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
SIO_010081: AVI_RS28880
subclass of: SO_0000673
so part of: AVI_RS28880
location: complement(73058..73174)
location: region:73058-73174:-1
so has part: feature:73058-73174:-1:exon

position:73058:-1
position: 73058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:73174:-1
position: 73174
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:73058-73174:-1:exon

AVI_RS28890
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
gene: repC
locus tag: AVI_RS28890
old locus tag: Avi_9901
so part of: sequence
location: 73663..74943
location: region:73663-74943:1
so has part: feature:73663-74943:1:exon
subclass of: SO_0000010

position:73663:1
position: 73663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:74943:1
position: 74943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:73663-74943:1:exon

AVI_RS28890
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
gene: repC
locus tag: AVI_RS28890
old locus tag: Avi_9901
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014330304.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid replication protein RepC
translation: MRETLTNKRLTGRRMTKERAEFRRLAQSTEVGTVTRGQLAVLSQSLPCTGLITSTESHLLTVIVNTARADAFDTGGRPIVFKSNNQLGFEINRSPGRVSRILSRLFDAGLVTMQDSANFKRYPIRDGEGELSDACGIDLRVLIARYRELDALVRQKREEKRANDAAARRFRAALRSARFALMNAADMTETALASLASRIDRIAAFVGIASRAPAFVSRRAARLLEWLVGRSVQASRRPETVSDHDNMTCTNVENDMHKQITNPHPFDWSKEERRPAKAGQHNSLKAGYASKRAFEESLTRGSDPDNRQSRPQQGIVALDDVWRAAPSLKDYFTTAPRSWSDLARIAPQICRLAGVSEDARLRAVDQMGQQAAAIAIAVTFEKYSRQEVSSPGGYLRAMTDRAASGELHLSRSVFGLAARNSMEALN
SIO_010081: AVI_RS28890
subclass of: SO_0000673
so part of: AVI_RS28890
location: 73663..74943
location: region:73663-74943:1
so has part: feature:73663-74943:1:exon

WP_012653079.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:73663-74943:1:exon

AVI_RS28895
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28895
old locus tag: Avi_9903
so part of: sequence
location: 74940..75446
location: region:74940-75446:1
so has part: feature:74940-75446:1:exon
subclass of: SO_0000010

position:74940:1
position: 74940
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:75446:1
position: 75446
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:74940-75446:1:exon

AVI_RS28895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28895
old locus tag: Avi_9903
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013851074.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: thermonuclease family protein
translation: MRKKPVFSALLFALVFSQPASAADYSGQARVIDGDTFSIRQQRIRIAAIDACERSQKGWKNGAEWACGVEARSYLSRLIDGKHVTCTIIDEDQYRRLVGQCYIQQTDIGLEMVKAGQARLLLQYLPRGNSMPLDAYHQAEDSARGRRLGQWAAEIDAPSNYRRSNSHQ
SIO_010081: AVI_RS28895
subclass of: SO_0000673
so part of: AVI_RS28895
location: 74940..75446
location: region:74940-75446:1
so has part: feature:74940-75446:1:exon

WP_012653080.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:74940-75446:1:exon

AVI_RS28900
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28900
old locus tag: Avi_9904
so part of: sequence
location: 75848..76183
location: region:75848-76183:1
so has part: feature:75848-76183:1:exon
subclass of: SO_0000010

position:75848:1
position: 75848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:76183:1
position: 76183
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:75848-76183:1:exon

AVI_RS28900
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28900
old locus tag: Avi_9904
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012881324.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF736 family protein
translation: MKSITNYIQFNGDNIETADGTGLISTIERDLPIKVTPFSSTNERAPTHRVYATSPAGHNLDVGGIWKKENGEGKPYYTISIKRMGFNANLGRFPGQDDPTLQAIIEWEPRD
SIO_010081: AVI_RS28900
subclass of: SO_0000673
so part of: AVI_RS28900
location: 75848..76183
location: region:75848-76183:1
so has part: feature:75848-76183:1:exon

WP_012653081.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:75848-76183:1:exon

AVI_RS28905
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28905
old locus tag: Avi_9906
so part of: sequence
location: 76304..76510
location: region:76304-76510:1
so has part: feature:76304-76510:1:exon
subclass of: SO_0000010

position:76304:1
position: 76304
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:76510:1
position: 76510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:76304-76510:1:exon

AVI_RS28905
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28905
old locus tag: Avi_9906
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010657934.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: antitoxin VbhA family protein
translation: MNIHSTRPDRSPEAVAARKKSTDQARAMNIRQGYQGDDALLEAATAAYVAGDLTREEYRARILPQPKG
SIO_010081: AVI_RS28905
subclass of: SO_0000673
so part of: AVI_RS28905
location: 76304..76510
location: region:76304-76510:1
so has part: feature:76304-76510:1:exon

WP_012653082.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:76304-76510:1:exon

AVI_RS28910
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28910
old locus tag: Avi_9907
so part of: sequence
location: 76580..77644
location: region:76580-77644:1
so has part: feature:76580-77644:1:exon
subclass of: SO_0000010

position:76580:1
position: 76580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:77644:1
position: 77644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:76580-77644:1:exon

AVI_RS28910
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28910
old locus tag: Avi_9907
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017264315.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Fic family protein
translation: MAEEHPKGSYTYPNTSDDPDRQNVLRNKFGIESKSELRTVEYRATQDRISEILEGDGPKGNFDAAHLKAIHGHIFQDVYEWAGHTRNESPVVDGARVEPIGGLSKGGTSFLHGARIDLGLNEALKPISDPQALRAASREEFVERAAKALSELNYVHPFREGNGRTQETFITELGRHYGHDIDMSVISKTRMIEASIATTNDPASPALKHVIEDAIDPNRREALRGAFADLEQVGEKPFEHYVRTARPGEEIEGQVFGHDNRVATLVTENGIIAVDRADLPERIPADDEEVKFTARSDFRTLGRPEQEAQAQPQSVEQKAEQAPQPSNHNAELKALEAQHLATRQQQNDREDRDR
SIO_010081: AVI_RS28910
subclass of: SO_0000673
so part of: AVI_RS28910
location: 76580..77644
location: region:76580-77644:1
so has part: feature:76580-77644:1:exon

WP_012653083.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:76580-77644:1:exon

AVI_RS28915
type: Gene
subclass of: SO_0000704
RO_0002162: 311402
locus tag: AVI_RS28915
old locus tag: Avi_9909
so part of: sequence
location: 77873..78730
location: region:77873-78730:1
so has part: feature:77873-78730:1:exon
subclass of: SO_0000010

position:77873:1
position: 77873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:77873-78730:1:exon

AVI_RS28915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 311402
locus tag: AVI_RS28915
old locus tag: Avi_9909
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017265753.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: zincin-like metallopeptidase domain-containing protein
translation: MQSKDTYQRITDAIIEQLEAGTKPWIRPWRGTVRRSPVPQRATGEAYRGINVIILWLSSQLAGYDGNTWMTYRQAQDLGGQVRKGEQGTLVVKYGTFTPKAQEADDKSIPYLKGYTVFNVEQIDGLPDRFKSPVEDIPEGPMPLLRHVEDFIGRTGAKITYGGKHACYRPGPDDIEMPARERFLSEVHLYSTVLHELGHWTGSKHRLDRDLSGRFGTETYAVEELVAELSAAFVCADLGVEHDPRENTATYLESWLTVLKQDKRAIVTAAAKAQTVSDYLHGLQS
SIO_010081: AVI_RS28915
subclass of: SO_0000673
so part of: AVI_RS28915
location: 77873..78730
location: region:77873-78730:1
so has part: feature:77873-78730:1:exon

WP_012653084.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:77873-78730:1:exon