Allorhizobium ampelinum S4 plasmid pAtS4e, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Allorhizobium; Allorhizobium ampelinum.
Genome sequences of three agrobacterium biovars help elucidate the evolution of multichromosome genomes in bacteria
Submitted (14-MAR-2007) Virginia Bioinformatics Institute, Virginia Tech, Washington Street, Box 0477, Blacksburg, VA 24061, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP000638.1.\nStrain/DNA available from Tom Burr, Cornell University,\ntjb1@cornell.edu. A. vitis S4 was isolated by Dr. Erno Szegedi in\n1981 from aerial gall that developed on a two-year-old woody\ngrapevine cane.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/05/2023 19:47:51\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,800\nCDSs (total) :: 5,729\nGenes (coding) :: 5,554\nCDSs (with protein) :: 5,554\nGenes (RNA) :: 71\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 55\nncRNAs :: 4\nPseudo Genes (total) :: 175\nCDSs (without protein) :: 175\nPseudo Genes (ambiguous residues) :: 0 of 175\nPseudo Genes (frameshifted) :: 82 of 175\nPseudo Genes (incomplete) :: 122 of 175\nPseudo Genes (internal stop) :: 28 of 175\nPseudo Genes (multiple problems) :: 52 of 175\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_007538730.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004672729.1
COORDINATES: similar to AA sequence:RefSeq:WP_018009670.1
COORDINATES: similar to AA sequence:RefSeq:WP_007812709.1
COORDINATES: protein motif:HMM:TIGR00254.1
COORDINATES: similar to AA sequence:RefSeq:WP_012650478.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654541.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012067512.1
COORDINATES: similar to AA sequence:RefSeq:WP_010210831.1
COORDINATES: similar to AA sequence:RefSeq:WP_018010807.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012067510.1
hydantoinase/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014130385.1
hydantoinase B/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014130386.1
COORDINATES: similar to AA sequence:RefSeq:WP_018209169.1
COORDINATES: similar to AA sequence:RefSeq:WP_015237131.1
COORDINATES: similar to AA sequence:RefSeq:WP_011172559.1
COORDINATES: similar to AA sequence:RefSeq:WP_015918209.1
COORDINATES: similar to AA sequence:RefSeq:WP_012650495.1
COORDINATES: similar to AA sequence:RefSeq:WP_010398366.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007256378.1
COORDINATES: similar to AA sequence:RefSeq:WP_011747649.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010398359.1
oligopeptide ABC transporter permease OppB
COORDINATES: similar to AA sequence:RefSeq:WP_011747651.1
peptide ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF012655.2
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_020046818.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007539541.1
COORDINATES: similar to AA sequence:RefSeq:WP_006311634.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006311635.1
COORDINATES: similar to AA sequence:RefSeq:WP_020046822.1
COORDINATES: similar to AA sequence:RefSeq:WP_017990688.1
COORDINATES: similar to AA sequence:RefSeq:WP_011650956.1
COORDINATES: similar to AA sequence:RefSeq:WP_012477327.1
COORDINATES: similar to AA sequence:RefSeq:WP_003518435.1
COORDINATES: protein motif:HMM:NF013677.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011749831.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_015914915.1
COORDINATES: similar to AA sequence:RefSeq:WP_007787912.1
COORDINATES: similar to AA sequence:RefSeq:WP_006315297.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015916412.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_015918229.1
COORDINATES: similar to AA sequence:RefSeq:WP_015918228.1
COORDINATES: protein motif:HMM:NF025047.2
COORDINATES: protein motif:HMM:NF021456.2
COORDINATES: similar to AA sequence:RefSeq:WP_011649242.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0033103 - protein secretion by the type VI secretion system [Evidence IEA]
type VI secretion system tip protein TssI/VgrG
COORDINATES: similar to AA sequence:RefSeq:WP_011930898.1
COORDINATES: similar to AA sequence:RefSeq:WP_006312947.1
COORDINATES: similar to AA sequence:RefSeq:WP_003508813.1
Ti-type conjugative transfer system protein TraG
COORDINATES: similar to AA sequence:RefSeq:WP_020046837.1
type IV conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_006315301.1
COORDINATES: similar to AA sequence:RefSeq:WP_003523838.1
Ti-type conjugative transfer relaxase TraA
COORDINATES: similar to AA sequence:RefSeq:WP_010974897.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0008233 - peptidase activity [Evidence IEA]
conjugative transfer signal peptidase TraF
COORDINATES: similar to AA sequence:RefSeq:WP_008121567.1
COORDINATES: similar to AA sequence:RefSeq:WP_012648975.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012335776.1
COORDINATES: similar to AA sequence:RefSeq:WP_007539734.1
COORDINATES: similar to AA sequence:RefSeq:WP_007789368.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF019310.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019845.2
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005074259.1
COORDINATES: similar to AA sequence:RefSeq:WP_009493858.1
COORDINATES: similar to AA sequence:RefSeq:WP_013368482.1
COORDINATES: similar to AA sequence:RefSeq:WP_009493860.1
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009493861.1
tripartite tricarboxylate transporter TctB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018631555.1
tripartite tricarboxylate transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_003572320.1
COORDINATES: similar to AA sequence:RefSeq:WP_015918564.1
COORDINATES: protein motif:HMM:NF024701.2
COORDINATES: similar to AA sequence:RefSeq:WP_012045199.1
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: similar to AA sequence:RefSeq:WP_009031025.1
COORDINATES: protein motif:HMM:NF014684.2
branched-chain amino acid ABC transporter permease
COORDINATES: protein motif:HMM:NF013584.2
COORDINATES: similar to AA sequence:RefSeq:WP_086558244.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS5-like element IS869 family transposase
COORDINATES: protein motif:HMM:NF023010.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013933.2
COORDINATES: protein motif:HMM:NF017864.2
COORDINATES: protein motif:HMM:NF012379.2
COORDINATES: similar to AA sequence:RefSeq:WP_012881221.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013491.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
GO:0016310 - phosphorylation [Evidence IEA]
PEP/pyruvate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF012609.2
GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
COORDINATES: protein motif:HMM:NF019342.2
GO:0016787 - hydrolase activity [Evidence IEA]
Members of this family of hydrolases with an active site Cys residue belong to MEROPS family C26; Derived by automated computational analysis using gene prediction method: Protein Homology.
gamma-glutamyl-gamma-aminobutyrate hydrolase family protein
COORDINATES: protein motif:HMM:NF024214.2
phosphocholine cytidylyltransferase family protein
COORDINATES: protein motif:HMM:NF013250.2
GO:0016780 - phosphotransferase activity, for other substituted phosphate groups [Evidence IEA]
GO:0008654 - phospholipid biosynthetic process [Evidence IEA]
CDP-alcohol phosphatidyltransferase family protein
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076612253.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480552.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015431.2
LysR substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF017760.2
COORDINATES: protein motif:HMM:NF012993.2
nitrilase-related carbon-nitrogen hydrolase
COORDINATES: protein motif:HMM:NF013053.2
COORDINATES: similar to AA sequence:RefSeq:WP_015918282.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006337181.1
COORDINATES: similar to AA sequence:RefSeq:WP_008876918.1
COORDINATES: similar to AA sequence:RefSeq:WP_007088637.1
COORDINATES: similar to AA sequence:RefSeq:WP_010150406.1
COORDINATES: similar to AA sequence:RefSeq:WP_005859530.1
COORDINATES: similar to AA sequence:RefSeq:WP_011251584.1
COORDINATES: similar to AA sequence:RefSeq:WP_018486154.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_007689505.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018497083.1
COORDINATES: similar to AA sequence:RefSeq:WP_016555799.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020649962.1
COORDINATES: similar to AA sequence:RefSeq:WP_004121588.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018899346.1
COORDINATES: similar to AA sequence:RefSeq:WP_011578808.1
COORDINATES: protein motif:HMM:NF012296.2
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: protein motif:HMM:NF024880.2
COORDINATES: similar to AA sequence:RefSeq:WP_017155370.1
COORDINATES: similar to AA sequence:RefSeq:WP_017155369.1
sulfotransferase domain-containing protein
COORDINATES: protein motif:HMM:NF017532.2
phytanoyl-CoA dioxygenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002941343.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_004401257.1
COORDINATES: similar to AA sequence:RefSeq:WP_007895472.1
COORDINATES: similar to AA sequence:RefSeq:WP_019098067.1
COORDINATES: similar to AA sequence:RefSeq:WP_018390436.1
COORDINATES: similar to AA sequence:RefSeq:WP_010566899.1
COORDINATES: similar to AA sequence:RefSeq:WP_010953665.1
COORDINATES: similar to AA sequence:RefSeq:WP_008107541.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007537947.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0015411 - ABC-type taurine transporter transporter activity [Evidence IEA]; GO:0030977 - taurine binding [Evidence IEA]
GO:0015734 - taurine transport [Evidence IEA]
taurine ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011427645.1
COORDINATES: similar to AA sequence:RefSeq:WP_016557736.1
COORDINATES: similar to AA sequence:RefSeq:WP_017968685.1
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010658975.1
2-oxoglutarate and iron-dependent oxygenase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015342443.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018318415.1
COORDINATES: similar to AA sequence:RefSeq:WP_012649461.1
putative FMN-dependent luciferase-like monooxygenase
COORDINATES: similar to AA sequence:RefSeq:WP_019404549.1
COORDINATES: similar to AA sequence:RefSeq:WP_018902641.1
COORDINATES: similar to AA sequence:RefSeq:WP_019404547.1
COORDINATES: similar to AA sequence:RefSeq:WP_004107568.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
TIGR04028 family ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003524693.1
COORDINATES: similar to AA sequence:RefSeq:WP_010973035.1
COORDINATES: similar to AA sequence:RefSeq:WP_004445472.1
COORDINATES: similar to AA sequence:RefSeq:WP_003511112.1
COORDINATES: similar to AA sequence:RefSeq:WP_014531914.1
COORDINATES: similar to AA sequence:RefSeq:WP_006315086.1
COORDINATES: similar to AA sequence:RefSeq:WP_010968088.1
COORDINATES: similar to AA sequence:RefSeq:WP_006315084.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636394.1
COORDINATES: similar to AA sequence:RefSeq:WP_019567210.1
COORDINATES: similar to AA sequence:RefSeq:WP_009467110.1
COORDINATES: similar to AA sequence:RefSeq:WP_019955011.1
COORDINATES: similar to AA sequence:RefSeq:WP_015918335.1
COORDINATES: similar to AA sequence:RefSeq:WP_010441423.1
COORDINATES: similar to AA sequence:RefSeq:WP_018246985.1
COORDINATES: similar to AA sequence:RefSeq:WP_012044847.1
COORDINATES: similar to AA sequence:RefSeq:WP_007755499.1
COORDINATES: similar to AA sequence:RefSeq:WP_012649481.1
COORDINATES: similar to AA sequence:RefSeq:WP_014241399.1
COORDINATES: similar to AA sequence:RefSeq:WP_013512378.1
GO:0008152 - metabolic process [Evidence IEA]
This protein belongs to a clade of FMN-dependent monooxygenases, within a broader family of flavin-dependent oxidoreductases, the luciferase-like monooxygenase (LMM) family, some of whose members use coenzyme F420 rather than FMN; Derived by automated computational analysis using gene prediction method: Protein Homology.
NtaA/DmoA family FMN-dependent monooxygenase
COORDINATES: similar to AA sequence:RefSeq:WP_012649491.1
COORDINATES: similar to AA sequence:RefSeq:WP_003524146.1
COORDINATES: similar to AA sequence:RefSeq:WP_007878999.1
COORDINATES: similar to AA sequence:RefSeq:WP_006471483.1
COORDINATES: similar to AA sequence:RefSeq:WP_006469875.1
COORDINATES: similar to AA sequence:RefSeq:WP_012093643.1
COORDINATES: similar to AA sequence:RefSeq:WP_006471485.1
COORDINATES: similar to AA sequence:RefSeq:WP_007879006.1
COORDINATES: similar to AA sequence:RefSeq:WP_007879007.1
COORDINATES: similar to AA sequence:RefSeq:WP_003524160.1
COORDINATES: similar to AA sequence:RefSeq:WP_003524024.1
COORDINATES: similar to AA sequence:RefSeq:WP_010973044.1
COORDINATES: similar to AA sequence:RefSeq:WP_013690686.1
COORDINATES: similar to AA sequence:RefSeq:WP_003511134.1
COORDINATES: similar to AA sequence:RefSeq:WP_003500381.1
COORDINATES: similar to AA sequence:RefSeq:WP_003511137.1
COORDINATES: similar to AA sequence:RefSeq:WP_012320279.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]; GO:0005488 - binding [Evidence IEA]
GO:0042918 - alkanesulfonate transport [Evidence IEA]
aliphatic sulfonate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014242374.1
COORDINATES: similar to AA sequence:RefSeq:WP_012649110.1
COORDINATES: similar to AA sequence:RefSeq:WP_007827550.1
amino acid ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003567587.1
COORDINATES: similar to AA sequence:RefSeq:WP_006134682.1
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007797477.1
COORDINATES: similar to AA sequence:RefSeq:WP_007824949.1
methionine ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003571872.1
COORDINATES: similar to AA sequence:RefSeq:WP_010687588.1
MetQ/NlpA family ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007694320.1
COORDINATES: similar to AA sequence:RefSeq:WP_007694318.1
COORDINATES: similar to AA sequence:RefSeq:WP_012650068.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010914482.1
COORDINATES: similar to AA sequence:RefSeq:WP_013891900.1
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003568544.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015837 - amine transport [Evidence IEA]
The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc.; The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003567837.1
COORDINATES: similar to AA sequence:RefSeq:WP_011425412.1
GO:0006750 - glutathione biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018896938.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
prolyl oligopeptidase family serine peptidase
COORDINATES: similar to AA sequence:RefSeq:WP_007802444.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480553.1
COORDINATES: similar to AA sequence:RefSeq:WP_007596761.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020047333.1
COORDINATES: similar to AA sequence:RefSeq:WP_018327586.1
COORDINATES: similar to AA sequence:RefSeq:WP_011649294.1
COORDINATES: similar to AA sequence:RefSeq:WP_010973455.1
glycine betaine/L-proline ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003504482.1
glycine betaine ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007700336.1
COORDINATES: similar to AA sequence:RefSeq:WP_007606920.1
COORDINATES: similar to AA sequence:RefSeq:WP_011428704.1
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015918385.1
COORDINATES: similar to AA sequence:RefSeq:WP_006200196.1
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_006939175.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007689565.1
choline/ethanolamine kinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015918029.1
COORDINATES: similar to AA sequence:RefSeq:WP_019565881.1
COORDINATES: similar to AA sequence:RefSeq:WP_003509648.1
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015918032.1
COORDINATES: similar to AA sequence:RefSeq:WP_012042772.1
COORDINATES: similar to AA sequence:RefSeq:WP_007689559.1
COORDINATES: similar to AA sequence:RefSeq:WP_003516947.1
COORDINATES: similar to AA sequence:RefSeq:WP_018901328.1
COORDINATES: similar to AA sequence:RefSeq:WP_018897827.1
autotransporter domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018245845.1
COORDINATES: similar to AA sequence:RefSeq:WP_007538502.1
COORDINATES: similar to AA sequence:RefSeq:WP_011983018.1
COORDINATES: similar to AA sequence:RefSeq:WP_015198072.1
COORDINATES: protein motif:HMM:NF037273.2
COORDINATES: similar to AA sequence:RefSeq:WP_007805785.1
COORDINATES: similar to AA sequence:RefSeq:WP_017997298.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_003517430.1
COORDINATES: similar to AA sequence:RefSeq:WP_003504309.1
COORDINATES: similar to AA sequence:RefSeq:WP_003504311.1
COORDINATES: similar to AA sequence:RefSeq:WP_003504313.1
COORDINATES: similar to AA sequence:RefSeq:WP_003504314.1
COORDINATES: similar to AA sequence:RefSeq:WP_003504315.1
COORDINATES: similar to AA sequence:RefSeq:WP_003504318.1
iron-siderophore ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006310319.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013166.2
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012873.2
COORDINATES: protein motif:HMM:NF003417.0
COORDINATES: similar to AA sequence:RefSeq:WP_006310328.1
beta-ketoacyl synthase N-terminal-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006310329.1
COORDINATES: similar to AA sequence:RefSeq:WP_012114778.1
COORDINATES: similar to AA sequence:RefSeq:WP_006310332.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_010973241.1
COORDINATES: similar to AA sequence:RefSeq:WP_010973240.1
COORDINATES: similar to AA sequence:RefSeq:WP_010973238.1
COORDINATES: similar to AA sequence:RefSeq:WP_010973237.1
COORDINATES: similar to AA sequence:RefSeq:WP_006194137.1
COORDINATES: similar to AA sequence:RefSeq:WP_006310341.1
COORDINATES: protein motif:HMM:NF014173.2
COORDINATES: similar to AA sequence:RefSeq:WP_010448993.1
COORDINATES: similar to AA sequence:RefSeq:WP_017669964.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002964913.1
GlsB/YeaQ/YmgE family stress response membrane protein
COORDINATES: similar to AA sequence:RefSeq:WP_020813274.1
COORDINATES: similar to AA sequence:RefSeq:WP_011794797.1
COORDINATES: similar to AA sequence:RefSeq:WP_019404201.1
glutathione ABC transporter permease GsiD
COORDINATES: similar to AA sequence:RefSeq:WP_005012280.1
glutathione ABC transporter permease GsiC
COORDINATES: similar to AA sequence:RefSeq:WP_010928975.1
glutathione ABC transporter substrate-binding protein GsiB
COORDINATES: similar to AA sequence:RefSeq:WP_019404204.1
GO:0015833 - peptide transport [Evidence IEA]
dipeptide ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019404205.1
MurR/RpiR family transcriptional regulator
COORDINATES: protein motif:HMM:NF014080.2
COORDINATES: similar to AA sequence:RefSeq:WP_018901612.1
COORDINATES: similar to AA sequence:RefSeq:WP_003550508.1
GO:0004559 - alpha-mannosidase activity [Evidence IEA]
GO:0006013 - mannose metabolic process [Evidence IEA]
glycoside hydrolase family 38 C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018245496.1
COORDINATES: similar to AA sequence:RefSeq:WP_003571662.1
COORDINATES: similar to AA sequence:RefSeq:WP_018901616.1
COORDINATES: similar to AA sequence:RefSeq:WP_012030091.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_003519653.1
COORDINATES: similar to AA sequence:RefSeq:WP_017991460.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591168.1
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011649414.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591170.1
COORDINATES: similar to AA sequence:RefSeq:WP_017996370.1
COORDINATES: similar to AA sequence:RefSeq:WP_003506013.1
COORDINATES: similar to AA sequence:RefSeq:WP_007750940.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572813.1
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003549865.1
COORDINATES: similar to AA sequence:RefSeq:WP_017956734.1
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010915775.1
COORDINATES: similar to AA sequence:RefSeq:WP_018444948.1
GO:0016853 - isomerase activity [Evidence IEA]; GO:0048029 - monosaccharide binding [Evidence IEA]
GO:0005996 - monosaccharide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018481989.1
COORDINATES: similar to AA sequence:RefSeq:WP_015318190.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516602.1
COORDINATES: similar to AA sequence:RefSeq:WP_018481986.1
COORDINATES: similar to AA sequence:RefSeq:WP_013850735.1
COORDINATES: similar to AA sequence:RefSeq:WP_018245823.1
GO:0004747 - ribokinase activity [Evidence IEA]
GO:0019303 - D-ribose catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018444941.1
sugar phosphate isomerase/epimerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018444940.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018245820.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018481982.1
COORDINATES: similar to AA sequence:RefSeq:WP_018245818.1
COORDINATES: similar to AA sequence:RefSeq:WP_018245817.1
COORDINATES: similar to AA sequence:RefSeq:WP_002720784.1
COORDINATES: similar to AA sequence:RefSeq:WP_011338360.1
COORDINATES: similar to AA sequence:RefSeq:WP_018857937.1
COORDINATES: similar to AA sequence:RefSeq:WP_018324938.1
COORDINATES: similar to AA sequence:RefSeq:WP_009565148.1
COORDINATES: similar to AA sequence:RefSeq:WP_011842364.1
COORDINATES: similar to AA sequence:RefSeq:WP_007819649.1
COORDINATES: similar to AA sequence:RefSeq:WP_018246917.1
COORDINATES: similar to AA sequence:RefSeq:WP_006661991.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018898941.1
COORDINATES: similar to AA sequence:RefSeq:WP_007791789.1
COORDINATES: similar to AA sequence:RefSeq:WP_015317681.1
COORDINATES: similar to AA sequence:RefSeq:WP_017967208.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_004110778.1
GO:0097573 - glutathione oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012759109.1
GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IEA]
class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI
COORDINATES: similar to AA sequence:RefSeq:WP_007700571.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
class 1b ribonucleoside-diphosphate reductase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_006270726.1
GO:0005971 - ribonucleoside-diphosphate reductase complex [Evidence IEA]
GO:0030145 - manganese ion binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]
class 1b ribonucleoside-diphosphate reductase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_005787473.1
COORDINATES: similar to AA sequence:RefSeq:WP_011492532.1
COORDINATES: similar to AA sequence:RefSeq:WP_012706413.1
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: protein motif:HMM:NF012488.2
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: protein motif:HMM:NF014476.2
COORDINATES: protein motif:HMM:NF013434.2
COORDINATES: similar to AA sequence:RefSeq:WP_007437675.1
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: similar to AA sequence:RefSeq:WP_008995995.1
NAD(P)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008995993.1
COORDINATES: protein motif:HMM:NF013756.2
COORDINATES: protein motif:HMM:NF012801.2
COORDINATES: similar to AA sequence:RefSeq:WP_008996001.1
COORDINATES: similar to AA sequence:RefSeq:WP_008996000.1
aspartate/glutamate racemase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008995999.1
COORDINATES: similar to AA sequence:RefSeq:WP_008995998.1
COORDINATES: similar to AA sequence:RefSeq:WP_013675157.1
GO:0008410 - CoA-transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008995997.1
COORDINATES: protein motif:HMM:NF024742.2
COORDINATES: similar to AA sequence:RefSeq:WP_008996010.1
COORDINATES: similar to AA sequence:RefSeq:WP_008996009.1
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008996008.1
COORDINATES: similar to AA sequence:RefSeq:WP_008996007.1
COORDINATES: similar to AA sequence:RefSeq:WP_008996006.1
COORDINATES: similar to AA sequence:RefSeq:WP_008996005.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014338879.1
bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase
COORDINATES: protein motif:HMM:NF015905.2
COORDINATES: protein motif:HMM:NF015862.2
COORDINATES: protein motif:HMM:NF013098.2
COORDINATES: similar to AA sequence:RefSeq:WP_014338877.1
COORDINATES: similar to AA sequence:RefSeq:WP_014338876.1
IclR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006023026.1
COORDINATES: similar to AA sequence:RefSeq:WP_007603180.1
COORDINATES: similar to AA sequence:RefSeq:WP_003554581.1
COORDINATES: similar to AA sequence:RefSeq:WP_018073102.1
COORDINATES: similar to AA sequence:RefSeq:WP_018073101.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247088.1
COORDINATES: similar to AA sequence:RefSeq:WP_007425429.1
COORDINATES: similar to AA sequence:RefSeq:WP_018064650.1
COORDINATES: similar to AA sequence:RefSeq:WP_018000580.1
COORDINATES: similar to AA sequence:RefSeq:WP_018000579.1
COORDINATES: similar to AA sequence:RefSeq:WP_017967613.1
GO:0018576 - catechol 1,2-dioxygenase activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]
GO:0009712 - catechol-containing compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013256.2
COORDINATES: similar to AA sequence:RefSeq:WP_006726466.1
COORDINATES: similar to AA sequence:RefSeq:WP_018069373.1
COORDINATES: similar to AA sequence:RefSeq:WP_007825937.1
COORDINATES: similar to AA sequence:RefSeq:WP_018448984.1
COORDINATES: protein motif:HMM:NF012692.2
COORDINATES: similar to AA sequence:RefSeq:WP_011252736.1
COORDINATES: protein motif:HMM:NF013567.2
COORDINATES: similar to AA sequence:RefSeq:WP_003511488.1
COORDINATES: similar to AA sequence:RefSeq:WP_008029168.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012650505.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007199072.1
COORDINATES: similar to AA sequence:RefSeq:WP_010972061.1
COORDINATES: similar to AA sequence:RefSeq:WP_018897432.1
This protein belongs to the uracil DNA glycosylase superfamily, members of which act in excision repair of DNA. However, it belongs more specifically to UdgX branch, whose founding member was found to bind uracil in DNA (where it does not belong), without cleaving it, appears to promote DNA repair by a pathway involving RecA, rather than base excision; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003581078.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
putative DNA modification/repair radical SAM protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611442.1
COORDINATES: similar to AA sequence:RefSeq:WP_052642687.1
COORDINATES: similar to AA sequence:RefSeq:WP_004432935.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549273.1
COORDINATES: similar to AA sequence:RefSeq:WP_003518266.1
COORDINATES: similar to AA sequence:RefSeq:WP_018448979.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496173.1
COORDINATES: similar to AA sequence:RefSeq:WP_018858698.1
COORDINATES: similar to AA sequence:RefSeq:WP_013762216.1
COORDINATES: similar to AA sequence:RefSeq:WP_018900965.1
COORDINATES: similar to AA sequence:RefSeq:WP_003518255.1
COORDINATES: similar to AA sequence:RefSeq:WP_015887704.1
COORDINATES: similar to AA sequence:RefSeq:WP_007773883.1
COORDINATES: similar to AA sequence:RefSeq:WP_007603161.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
efflux transporter outer membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007634835.1
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: similar to AA sequence:RefSeq:WP_012331773.1
COORDINATES: similar to AA sequence:RefSeq:WP_010472004.1
COORDINATES: protein motif:HMM:NF026032.2
COORDINATES: similar to AA sequence:RefSeq:WP_012606126.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496445.1
COORDINATES: similar to AA sequence:RefSeq:WP_018068419.1
COORDINATES: similar to AA sequence:RefSeq:WP_003567782.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496448.1
COORDINATES: similar to AA sequence:RefSeq:WP_008523486.1
COORDINATES: similar to AA sequence:RefSeq:WP_018327216.1
aspartate aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008523489.1
COORDINATES: similar to AA sequence:RefSeq:WP_026155209.1
COORDINATES: similar to AA sequence:RefSeq:WP_008723760.1
isocitrate lyase/PEP mutase family protein
COORDINATES: protein motif:HMM:NF012706.2
COORDINATES: similar to AA sequence:RefSeq:WP_008723764.1
COORDINATES: similar to AA sequence:RefSeq:WP_002601106.1
COORDINATES: similar to AA sequence:RefSeq:WP_006773505.1
COORDINATES: similar to AA sequence:RefSeq:WP_010966898.1
COORDINATES: similar to AA sequence:RefSeq:WP_007800686.1
COORDINATES: similar to AA sequence:RefSeq:WP_011653831.1
COORDINATES: similar to AA sequence:RefSeq:WP_018897778.1
COORDINATES: similar to AA sequence:RefSeq:WP_018897777.1
COORDINATES: similar to AA sequence:RefSeq:WP_003543565.1
COORDINATES: similar to AA sequence:RefSeq:WP_018448208.1
COORDINATES: similar to AA sequence:RefSeq:WP_003543570.1
COORDINATES: similar to AA sequence:RefSeq:WP_018897772.1
COORDINATES: similar to AA sequence:RefSeq:WP_018448210.1
COORDINATES: protein motif:HMM:TIGR02444.1
COORDINATES: similar to AA sequence:RefSeq:WP_018897769.1
COORDINATES: similar to AA sequence:RefSeq:WP_018184784.1
COORDINATES: similar to AA sequence:RefSeq:WP_018897767.1
GO:0004397 - histidine ammonia-lyase activity [Evidence IEA]
GO:0006548 - histidine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020095092.1
COORDINATES: similar to AA sequence:RefSeq:WP_014446277.1
COORDINATES: similar to AA sequence:RefSeq:WP_020095094.1
COORDINATES: similar to AA sequence:RefSeq:WP_012318380.1
COORDINATES: similar to AA sequence:RefSeq:WP_012318381.1
COORDINATES: similar to AA sequence:RefSeq:WP_003582873.1
GO:0004019 - adenylosuccinate synthase activity [Evidence IEA]; GO:0005525 - GTP binding [Evidence IEA]
GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017212807.1
COORDINATES: protein motif:HMM:NF040269.1
COORDINATES: similar to AA sequence:RefSeq:WP_018072295.1
COORDINATES: similar to AA sequence:RefSeq:WP_004431490.1
COORDINATES: protein motif:HMM:NF024993.2
ankyrin repeat domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015836528.1
COORDINATES: similar to AA sequence:RefSeq:WP_013761019.1
GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020010274.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_004431433.1
COORDINATES: similar to AA sequence:RefSeq:WP_007603738.1
COORDINATES: similar to AA sequence:RefSeq:WP_006472548.1
COORDINATES: similar to AA sequence:RefSeq:WP_013027850.1
COORDINATES: similar to AA sequence:RefSeq:WP_013761313.1
GO:0004345 - glucose-6-phosphate dehydrogenase activity [Evidence IEA]
GO:0006098 - pentose-phosphate shunt [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006201155.1
GO:0004616 - phosphogluconate dehydrogenase (decarboxylating) activity [Evidence IEA]
decarboxylating 6-phosphogluconate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_010974204.1
GO:0004339 - glucan 1,4-alpha-glucosidase activity [Evidence IEA]
GO:0009251 - glucan catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015918619.1
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003521909.1
MSMEG_0572 family nitrogen starvation response protein
COORDINATES: similar to AA sequence:RefSeq:WP_003545448.1
GO:0000257 - nitrilase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011650436.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]; GO:0046500 - S-adenosylmethionine metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017990254.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007603208.1
GO:0003824 - catalytic activity [Evidence IEA]
sll0787 family AIR synthase-like protein
COORDINATES: similar to AA sequence:RefSeq:WP_007690661.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007788241.1
MSMEG_0570 family nitrogen starvation response protein
COORDINATES: similar to AA sequence:RefSeq:WP_007603202.1
MSMEG_0569 family flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_011650430.1
COORDINATES: similar to AA sequence:RefSeq:WP_018901816.1
COORDINATES: similar to AA sequence:RefSeq:WP_010402679.1
COORDINATES: protein motif:HMM:NF024698.2
COORDINATES: protein motif:HMM:TIGR01856.1
COORDINATES: similar to AA sequence:RefSeq:WP_006334645.1
COORDINATES: similar to AA sequence:RefSeq:WP_003495425.1
COORDINATES: similar to AA sequence:RefSeq:WP_003495424.1
COORDINATES: similar to AA sequence:RefSeq:WP_003495423.1
COORDINATES: similar to AA sequence:RefSeq:WP_015687494.1
COORDINATES: similar to AA sequence:RefSeq:WP_012426079.1
COORDINATES: similar to AA sequence:RefSeq:WP_018901814.1
COORDINATES: similar to AA sequence:RefSeq:WP_013637394.1
COORDINATES: similar to AA sequence:RefSeq:WP_007773262.1
COORDINATES: similar to AA sequence:RefSeq:WP_020048729.1
COORDINATES: similar to AA sequence:RefSeq:WP_015918643.1
COORDINATES: similar to AA sequence:RefSeq:WP_007633116.1
COORDINATES: similar to AA sequence:RefSeq:WP_007766035.1
COORDINATES: similar to AA sequence:RefSeq:WP_018245625.1
COORDINATES: similar to AA sequence:RefSeq:WP_018496868.1
COORDINATES: similar to AA sequence:RefSeq:WP_018245623.1
COORDINATES: similar to AA sequence:RefSeq:WP_011650726.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611884.1
COORDINATES: similar to AA sequence:RefSeq:WP_002965835.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0016151 - nickel cation binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]; GO:0010045 - response to nickel cation [Evidence IEA]
nickel-responsive transcriptional regulator NikR
COORDINATES: similar to AA sequence:RefSeq:WP_019994548.1
GO:0015413 - ABC-type nickel transporter activity [Evidence IEA]; GO:0016151 - nickel cation binding [Evidence IEA]
GO:0015675 - nickel cation transport [Evidence IEA]
nickel ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004692192.1
nickel ABC transporter permease subunit NikB
COORDINATES: protein motif:HMM:NF007738.0
GO:0015099 - nickel cation transmembrane transporter activity [Evidence IEA]
nickel ABC transporter permease subunit NikC
COORDINATES: similar to AA sequence:RefSeq:WP_007369646.1
COORDINATES: similar to AA sequence:RefSeq:WP_008887932.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0015413 - ABC-type nickel transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003572907.1
COORDINATES: protein motif:HMM:NF024934.2
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005859849.1
COORDINATES: similar to AA sequence:RefSeq:WP_005673865.1
COORDINATES: similar to AA sequence:RefSeq:WP_006986362.1
COORDINATES: similar to AA sequence:RefSeq:WP_007817309.1
COORDINATES: similar to AA sequence:RefSeq:WP_018115059.1
COORDINATES: similar to AA sequence:RefSeq:WP_011927039.1
COORDINATES: similar to AA sequence:RefSeq:WP_013213277.1
GO:0006777 - Mo-molybdopterin cofactor biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011442294.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018647048.1
COORDINATES: similar to AA sequence:RefSeq:WP_018647049.1
COORDINATES: similar to AA sequence:RefSeq:WP_013213281.1
COORDINATES: protein motif:HMM:NF025878.2
COORDINATES: similar to AA sequence:RefSeq:WP_018644740.1
COORDINATES: similar to AA sequence:RefSeq:WP_006316386.1
COORDINATES: similar to AA sequence:RefSeq:WP_015916551.1
PAS domain-containing methyl-accepting chemotaxis protein
COORDINATES: similar to AA sequence:RefSeq:WP_007636314.1
COORDINATES: similar to AA sequence:RefSeq:WP_003505731.1
sigma-54-dependent Fis family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006727844.1
COORDINATES: similar to AA sequence:RefSeq:WP_003532171.1
COORDINATES: similar to AA sequence:RefSeq:WP_007795112.1
GO:0047443 - 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity [Evidence IEA]
4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase
COORDINATES: similar to AA sequence:RefSeq:WP_015241404.1
COORDINATES: similar to AA sequence:RefSeq:WP_018486060.1
COORDINATES: similar to AA sequence:RefSeq:WP_003519688.1
GO:0009317 - acetyl-CoA carboxylase complex [Evidence IEA]
GO:0003989 - acetyl-CoA carboxylase activity [Evidence IEA]; GO:0004075 - biotin carboxylase activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
acetyl-CoA carboxylase biotin carboxylase subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012649316.1
COORDINATES: similar to AA sequence:RefSeq:WP_012706241.1
COORDINATES: similar to AA sequence:RefSeq:WP_007689354.1
biotin-dependent carboxyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014332865.1
COORDINATES: similar to AA sequence:RefSeq:WP_012555607.1
pyridoxal phosphate-dependent aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_018236262.1
nitrogen assimilation transcriptional regulator NAC
COORDINATES: similar to AA sequence:RefSeq:WP_003591875.1
COORDINATES: similar to AA sequence:RefSeq:WP_007812555.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572211.1
COORDINATES: similar to AA sequence:RefSeq:WP_003577717.1
COORDINATES: similar to AA sequence:RefSeq:WP_003555460.1
COORDINATES: similar to AA sequence:RefSeq:WP_008997168.1
COORDINATES: similar to AA sequence:RefSeq:WP_008997169.1
COORDINATES: protein motif:HMM:NF013714.2
COORDINATES: similar to AA sequence:RefSeq:WP_008994728.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653702.1
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008330034.1
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009942309.1
COORDINATES: similar to AA sequence:RefSeq:WP_010139380.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010139381.1
COORDINATES: similar to AA sequence:RefSeq:WP_012592396.1
COORDINATES: similar to AA sequence:RefSeq:WP_012592395.1
COORDINATES: similar to AA sequence:RefSeq:WP_004291839.1
COORDINATES: similar to AA sequence:RefSeq:WP_012584618.1
carboxyl transferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018151762.1
enoyl-CoA hydratase/isomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004315433.1
acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_011766790.1
COORDINATES: similar to AA sequence:RefSeq:WP_007690348.1
COORDINATES: similar to AA sequence:RefSeq:WP_007596733.1
GO:0003867 - 4-aminobutyrate transaminase activity [Evidence IEA]
GO:0009448 - gamma-aminobutyric acid metabolic process [Evidence IEA]
4-aminobutyrate--2-oxoglutarate transaminase
COORDINATES: similar to AA sequence:RefSeq:WP_017271873.1
COORDINATES: similar to AA sequence:RefSeq:WP_012640573.1
COORDINATES: protein motif:HMM:NF033516.0
COORDINATES: similar to AA sequence:RefSeq:WP_076612350.1