Paraburkholderia terrae strain KU-64 plasmid pPT365, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Paraburkholderia.
Identification and characterization of a novel class of self-sufficient cytochrome P450 hydroxylase involved in cyclohexanecarboxylate degradation in Paraburkholderia terrae strain KU-64
Submitted (29-JUL-2021) Contact:Hiroaki Iwaki Kansai University, Department of Life Science and Biotechnology; Yamate-cho 3-3-35, Suita, Osaka 564-8680, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP024959.1.\nAnnotated by DFAST https://dfast.ddbj.nig.ac.jp/\n\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3\nGenome Coverage :: 66x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/23/2023 05:21:40\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 9,459\nCDSs (total) :: 9,365\nGenes (coding) :: 9,159\nCDSs (with protein) :: 9,159\nGenes (RNA) :: 94\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 69\nncRNAs :: 4\nPseudo Genes (total) :: 206\nCDSs (without protein) :: 206\nPseudo Genes (ambiguous residues) :: 0 of 206\nPseudo Genes (frameshifted) :: 78 of 206\nPseudo Genes (incomplete) :: 153 of 206\nPseudo Genes (internal stop) :: 29 of 206\nPseudo Genes (multiple problems) :: 47 of 206\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF012744.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019906650.1
COORDINATES: similar to AA sequence:RefSeq:WP_006406347.1
GO:0008460 - dTDP-glucose 4,6-dehydratase activity [Evidence IEA]
GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012428089.1
GO:0008879 - glucose-1-phosphate thymidylyltransferase activity [Evidence IEA]
glucose-1-phosphate thymidylyltransferase RfbA
COORDINATES: similar to AA sequence:RefSeq:WP_017772884.1
GO:0008830 - dTDP-4-dehydrorhamnose 3,5-epimerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012428087.1
GO:0008831 - dTDP-4-dehydrorhamnose reductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014606.2
GO:0015159 - polysaccharide transmembrane transporter activity [Evidence IEA]
GO:0015774 - polysaccharide transport [Evidence IEA]
polysaccharide biosynthesis/export family protein
COORDINATES: protein motif:HMM:NF013607.2
low molecular weight phosphotyrosine protein phosphatase
COORDINATES: protein motif:HMM:TIGR01007.1
GO:0045226 - extracellular polysaccharide biosynthetic process [Evidence IEA]
polysaccharide biosynthesis tyrosine autokinase
COORDINATES: protein motif:HMM:TIGR03023.1
undecaprenyl-phosphate glucose phosphotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_013592463.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011494212.1
COORDINATES: similar to AA sequence:RefSeq:WP_007735573.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012428109.1
COORDINATES: similar to AA sequence:RefSeq:WP_013587619.1
COORDINATES: similar to AA sequence:RefSeq:WP_007577963.1
COORDINATES: similar to AA sequence:RefSeq:WP_007579263.1
COORDINATES: similar to AA sequence:RefSeq:WP_011400993.1
COORDINATES: similar to AA sequence:RefSeq:WP_007738141.1
COORDINATES: similar to AA sequence:RefSeq:WP_015004287.1
H-NS family nucleoid-associated regulatory protein
COORDINATES: similar to AA sequence:RefSeq:WP_015004289.1
COORDINATES: similar to AA sequence:RefSeq:WP_015004290.1
COORDINATES: similar to AA sequence:RefSeq:WP_009770619.1
COORDINATES: similar to AA sequence:RefSeq:WP_015004291.1
COORDINATES: similar to AA sequence:RefSeq:WP_007749515.1
COORDINATES: similar to AA sequence:RefSeq:WP_015004453.1
COORDINATES: similar to AA sequence:RefSeq:WP_007749692.1
COORDINATES: similar to AA sequence:RefSeq:WP_007749694.1
COORDINATES: similar to AA sequence:RefSeq:WP_007749697.1
COORDINATES: similar to AA sequence:RefSeq:WP_018004052.1
COORDINATES: similar to AA sequence:RefSeq:WP_009669160.1
COORDINATES: protein motif:HMM:NF025638.2
COORDINATES: protein motif:HMM:NF037095.2
LA2681 family HEPN domain-containing protein
COORDINATES: protein motif:HMM:TIGR02292.1
COORDINATES: similar to AA sequence:RefSeq:WP_012406427.1
COORDINATES: similar to AA sequence:RefSeq:WP_012406428.1
COORDINATES: similar to AA sequence:RefSeq:WP_015004174.1
COORDINATES: similar to AA sequence:RefSeq:WP_012406430.1
type II toxin-antitoxin system CcdA family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_007584111.1
COORDINATES: protein motif:HMM:NF024491.2
COORDINATES: similar to AA sequence:RefSeq:WP_007589704.1
GO:0051782 - negative regulation of cell division [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
translesion DNA synthesis-associated protein ImuA
COORDINATES: similar to AA sequence:RefSeq:WP_012211068.1
COORDINATES: similar to AA sequence:RefSeq:WP_012211067.1
COORDINATES: similar to AA sequence:RefSeq:WP_007583941.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194249.1
GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014194253.1
GO:0045027 - DNA end binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014194252.1
COORDINATES: similar to AA sequence:RefSeq:WP_011490132.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]
SOS response-associated peptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020071170.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020071169.1
COORDINATES: similar to AA sequence:RefSeq:WP_012435669.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018432957.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008348772.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008346110.1
COORDINATES: similar to AA sequence:RefSeq:WP_012218382.1
COORDINATES: similar to AA sequence:RefSeq:WP_014900394.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009770384.1
COORDINATES: similar to AA sequence:RefSeq:WP_007733295.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194457.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0003955 - NAD(P)H dehydrogenase (quinone) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008348787.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194508.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194440.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194456.1
COORDINATES: protein motif:HMM:NF025045.2
COORDINATES: similar to AA sequence:RefSeq:WP_003201375.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
efflux transporter outer membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018601918.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019833589.1
COORDINATES: protein motif:HMM:NF012655.2
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007742879.1
COORDINATES: similar to AA sequence:RefSeq:WP_012238270.1
COORDINATES: similar to AA sequence:RefSeq:WP_018434562.1
COORDINATES: protein motif:HMM:NF012334.2
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_014726041.1
COORDINATES: similar to AA sequence:RefSeq:WP_014726040.1
GO:0030638 - polyketide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014726039.1
COORDINATES: similar to AA sequence:RefSeq:WP_014899285.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008920083.1
electron transfer flavoprotein-ubiquinone oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_012372327.1
COORDINATES: similar to AA sequence:RefSeq:WP_012405800.1
COORDINATES: similar to AA sequence:RefSeq:WP_006577021.1
COORDINATES: similar to AA sequence:RefSeq:WP_004376743.1
electron transfer flavoprotein subunit beta/FixA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012525654.1
ketopantoate reductase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF015905.2
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013900741.1
COORDINATES: similar to AA sequence:RefSeq:WP_007681032.1
COORDINATES: similar to AA sequence:RefSeq:WP_009506873.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: similar to AA sequence:RefSeq:WP_011349652.1
COORDINATES: similar to AA sequence:RefSeq:WP_011661153.1
COORDINATES: similar to AA sequence:RefSeq:WP_011349650.1
CaiB/BaiF CoA-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012345471.1
GO:0003868 - 4-hydroxyphenylpyruvate dioxygenase activity [Evidence IEA]
GO:0006559 - L-phenylalanine catabolic process [Evidence IEA]; GO:0006572 - tyrosine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013092115.1
COORDINATES: similar to AA sequence:RefSeq:WP_014972103.1
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006767171.1
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004823210.1
COORDINATES: similar to AA sequence:RefSeq:WP_007183037.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase
COORDINATES: similar to AA sequence:RefSeq:WP_013690631.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013094714.1
COORDINATES: similar to AA sequence:RefSeq:WP_020071160.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432953.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432952.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182571.1
COORDINATES: similar to AA sequence:RefSeq:WP_020071155.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182575.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432946.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094723.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432944.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432943.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432942.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094728.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094730.1
COORDINATES: similar to AA sequence:RefSeq:WP_006757255.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0015074 - DNA integration [Evidence IEA]
Members of this protein family are the putative conjugative coupling factor, TraD, as the term is used for the SXT and TOL plasmid systems; Derived by automated computational analysis using gene prediction method: Protein Homology.
conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_007585070.1
COORDINATES: similar to AA sequence:RefSeq:WP_020071143.1
GO:0030255 - protein secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013094734.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432933.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432932.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_013094737.1
COORDINATES: similar to AA sequence:RefSeq:WP_011875532.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094739.1
COORDINATES: similar to AA sequence:RefSeq:WP_012428557.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018432920.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432919.1
COORDINATES: similar to AA sequence:RefSeq:WP_013700032.1
COORDINATES: similar to AA sequence:RefSeq:WP_012218000.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094746.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094747.1
COORDINATES: similar to AA sequence:RefSeq:WP_012367179.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094752.1
GO:0019867 - outer membrane [Evidence IEA]
glycine zipper 2TM domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013700023.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432907.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094756.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094757.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432904.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094759.1
COORDINATES: similar to AA sequence:RefSeq:WP_012217989.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432900.1
COORDINATES: similar to AA sequence:RefSeq:WP_011875514.1
COORDINATES: similar to AA sequence:RefSeq:WP_012217986.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013094766.1
COORDINATES: similar to AA sequence:RefSeq:WP_006761112.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432883.1
COORDINATES: similar to AA sequence:RefSeq:WP_010121358.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094774.1
Lar family restriction alleviation protein
COORDINATES: similar to AA sequence:RefSeq:WP_012367197.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432878.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094385.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432875.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094387.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432873.1
GO:0003896 - DNA primase activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
primase-helicase zinc-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018432872.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432871.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094391.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432869.1
COORDINATES: similar to AA sequence:RefSeq:WP_012367208.1
nuclease-related domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013094396.1
GO:0045893 - positive regulation of DNA-templated transcription [Evidence IEA]; GO:1902208 - regulation of bacterial-type flagellum assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013094397.1
COORDINATES: similar to AA sequence:RefSeq:WP_012217963.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094399.1
COORDINATES: similar to AA sequence:RefSeq:WP_012217959.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343102.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432858.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094404.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094405.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432855.1
COORDINATES: similar to AA sequence:RefSeq:WP_011875484.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432853.1
toxin co-regulated pilus biosynthesis Q family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011875482.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013094410.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_008343086.1
transglycosylase SLT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007182592.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432848.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182594.1
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_006749801.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732705.1
COORDINATES: similar to AA sequence:RefSeq:WP_011875954.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012406497.1
COORDINATES: protein motif:HMM:NF033542.1
COORDINATES: similar to AA sequence:RefSeq:WP_009770544.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015004359.1
COORDINATES: similar to AA sequence:RefSeq:WP_015004360.1
COORDINATES: similar to AA sequence:RefSeq:WP_012211046.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007803296.1
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_014151835.1
COORDINATES: similar to AA sequence:RefSeq:WP_014192820.1
COORDINATES: similar to AA sequence:RefSeq:WP_018423092.1
COORDINATES: similar to AA sequence:RefSeq:WP_017772838.1
GO:0018738 - S-formylglutathione hydrolase activity [Evidence IEA]
GO:0046292 - formaldehyde metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019451408.1
GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0051903 - S-(hydroxymethyl)glutathione dehydrogenase activity [Evidence IEA]
GO:0006113 - fermentation [Evidence IEA]; GO:0009404 - toxin metabolic process [Evidence IEA]
S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
COORDINATES: protein motif:HMM:NF024799.2
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011567156.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008876760.1
COORDINATES: similar to AA sequence:RefSeq:WP_015666006.1
COORDINATES: similar to AA sequence:RefSeq:WP_007577254.1
COORDINATES: similar to AA sequence:RefSeq:WP_018042643.1
COORDINATES: similar to AA sequence:RefSeq:WP_016880741.1
COORDINATES: protein motif:HMM:NF005559.1
substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: similar to AA sequence:RefSeq:WP_005242941.1
COORDINATES: similar to AA sequence:RefSeq:WP_007577257.1
COORDINATES: similar to AA sequence:RefSeq:WP_019861857.1
COORDINATES: similar to AA sequence:RefSeq:WP_005442180.1
COORDINATES: similar to AA sequence:RefSeq:WP_014006972.1
type 1 glutamine amidotransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018480201.1
COORDINATES: similar to AA sequence:RefSeq:WP_006362091.1
COORDINATES: similar to AA sequence:RefSeq:WP_006408746.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
TIGR03571 family LLM class oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_006480404.1
COORDINATES: similar to AA sequence:RefSeq:WP_006412990.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006497952.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012366420.1
COORDINATES: similar to AA sequence:RefSeq:WP_012337059.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]; GO:0042908 - xenobiotic transport [Evidence IEA]
multidrug efflux RND transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_006497955.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011491136.1
COORDINATES: similar to AA sequence:RefSeq:WP_007738055.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_012366416.1
COORDINATES: similar to AA sequence:RefSeq:WP_013972189.1
COORDINATES: similar to AA sequence:RefSeq:WP_020200608.1
COORDINATES: similar to AA sequence:RefSeq:WP_020203269.1
COORDINATES: similar to AA sequence:RefSeq:WP_014250399.1
COORDINATES: protein motif:HMM:NF024811.2
COORDINATES: similar to AA sequence:RefSeq:WP_012366413.1
COORDINATES: similar to AA sequence:RefSeq:WP_012366412.1
transketolase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012366411.1
GO:0009013 - succinate-semialdehyde dehydrogenase [NAD(P)+] activity [Evidence IEA]
GO:0009450 - gamma-aminobutyric acid catabolic process [Evidence IEA]
NADP-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_015007886.1
COORDINATES: similar to AA sequence:RefSeq:WP_012366409.1
COORDINATES: similar to AA sequence:RefSeq:WP_012366408.1
COORDINATES: similar to AA sequence:RefSeq:WP_012366407.1
COORDINATES: similar to AA sequence:RefSeq:WP_008063190.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
GMC family oxidoreductase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017277498.1
COORDINATES: similar to AA sequence:RefSeq:WP_012366402.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182647.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012428110.1
COORDINATES: similar to AA sequence:RefSeq:WP_012948683.1
COORDINATES: protein motif:HMM:NF020650.2
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_005463832.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_007743519.1
succinylglutamate desuccinylase/aspartoacylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013091118.1
COORDINATES: similar to AA sequence:RefSeq:WP_008918983.1
COORDINATES: similar to AA sequence:RefSeq:WP_010096391.1
COORDINATES: similar to AA sequence:RefSeq:WP_004528953.1
This protein belongs to a clade of FMN-dependent monooxygenases, within a broader family of flavin-dependent oxidoreductases, the luciferase-like monooxygenase (LMM) family, some of whose members use coenzyme F420 rather than FMN; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018437264.1
amino acid ABC transporter permease/ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018437263.1
COORDINATES: similar to AA sequence:RefSeq:WP_007739797.1
COORDINATES: similar to AA sequence:RefSeq:WP_019467618.1
COORDINATES: similar to AA sequence:RefSeq:WP_008920260.1
GO:0005515 - protein binding [Evidence IEA]
SET domain-containing protein-lysine N-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011487235.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006049832.1
COORDINATES: similar to AA sequence:RefSeq:WP_007577590.1
COORDINATES: similar to AA sequence:RefSeq:WP_007577589.1
COORDINATES: similar to AA sequence:RefSeq:WP_009771032.1
COORDINATES: similar to AA sequence:RefSeq:WP_015004471.1
COORDINATES: similar to AA sequence:RefSeq:WP_007736808.1
COORDINATES: similar to AA sequence:RefSeq:WP_004313317.1
COORDINATES: similar to AA sequence:RefSeq:WP_018420332.1
COORDINATES: similar to AA sequence:RefSeq:WP_015004220.1
COORDINATES: similar to AA sequence:RefSeq:WP_018426306.1
COORDINATES: similar to AA sequence:RefSeq:WP_007734540.1
COORDINATES: protein motif:HMM:NF025433.2
LssY C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009522205.1
COORDINATES: similar to AA sequence:RefSeq:WP_007738366.1
COORDINATES: similar to AA sequence:RefSeq:WP_007579928.1
COORDINATES: similar to AA sequence:RefSeq:WP_007590137.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007590140.1
COORDINATES: similar to AA sequence:RefSeq:WP_007733560.1
COORDINATES: similar to AA sequence:RefSeq:WP_009769568.1
COORDINATES: similar to AA sequence:RefSeq:WP_007733564.1
COORDINATES: similar to AA sequence:RefSeq:WP_007579916.1
COORDINATES: similar to AA sequence:RefSeq:WP_007579919.1
COORDINATES: similar to AA sequence:RefSeq:WP_007579921.1
COORDINATES: similar to AA sequence:RefSeq:WP_007579923.1
COORDINATES: similar to AA sequence:RefSeq:WP_018420649.1
COORDINATES: similar to AA sequence:RefSeq:WP_007229744.1
COORDINATES: similar to AA sequence:RefSeq:WP_008759231.1
COORDINATES: similar to AA sequence:RefSeq:WP_006159567.1
COORDINATES: similar to AA sequence:RefSeq:WP_008050908.1
COORDINATES: similar to AA sequence:RefSeq:WP_012355531.1
COORDINATES: similar to AA sequence:RefSeq:WP_007942980.1
2,4'-dihydroxyacetophenone dioxygenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009769597.1
COORDINATES: similar to AA sequence:RefSeq:WP_007590367.1
GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007804142.1
COORDINATES: similar to AA sequence:RefSeq:WP_004188631.1
GO:0003983 - UTP:glucose-1-phosphate uridylyltransferase activity [Evidence IEA]
GO:0009225 - nucleotide-sugar metabolic process [Evidence IEA]
UTP--glucose-1-phosphate uridylyltransferase GalU
COORDINATES: similar to AA sequence:RefSeq:WP_017772889.1
UDP-glucose/GDP-mannose dehydrogenase family protein
COORDINATES: protein motif:HMM:NF025953.2
COORDINATES: protein motif:HMM:NF012745.2