Denitratisoma oestradiolicum strain DSM 16959 plasmid pI.
Bacteria; Pseudomonadota; Betaproteobacteria; Nitrosomonadales; Sterolibacteriaceae; Denitratisoma.
Submitted (06-MAR-2020) Genoscope CEA, 2 rue Gaston Cremieux CP5706 91057 Evry cedex, France, France
REFSEQ INFORMATION: The reference sequence is identical to\nLR778302.1.\nGenome annotation was performed using the MicroScope platform.\nAdditional annotation results about similarity searches,\ncomparative genomics and metabolic network predictions are\navailable on the platform web site\n(http://www.genoscope.cns.fr/agc/microscope).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/27/2022 04:04:10\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,006\nCDSs (total) :: 3,945\nGenes (coding) :: 3,898\nCDSs (with protein) :: 3,898\nGenes (RNA) :: 61\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 3\nPseudo Genes (total) :: 47\nCDSs (without protein) :: 47\nPseudo Genes (ambiguous residues) :: 0 of 47\nPseudo Genes (frameshifted) :: 17 of 47\nPseudo Genes (incomplete) :: 37 of 47\nPseudo Genes (internal stop) :: 3 of 47\nPseudo Genes (multiple problems) :: 8 of 47\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##
type strain of Denitratisoma oestradiolicum
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_013723323.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013723322.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011798672.1
COORDINATES: protein motif:HMM:NF012442.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011798677.1
COORDINATES: protein motif:HMM:NF018154.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024605.2
COORDINATES: similar to AA sequence:RefSeq:WP_011257122.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798681.1
COORDINATES: protein motif:HMM:NF037437.2
COORDINATES: similar to AA sequence:RefSeq:WP_009242134.1
COORDINATES: similar to AA sequence:RefSeq:WP_010104639.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798686.1
COORDINATES: protein motif:HMM:NF013594.2
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013723315.1
COORDINATES: protein motif:HMM:NF019530.2
conjugal transfer protein TraG N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF017892.2
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009242098.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242097.1
COORDINATES: similar to AA sequence:RefSeq:WP_009277743.1
COORDINATES: protein motif:HMM:TIGR02742.1
type-F conjugative transfer system pilin assembly protein TrbC
COORDINATES: similar to AA sequence:RefSeq:WP_006029210.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242092.1
type-F conjugative transfer system protein TraW
COORDINATES: similar to AA sequence:RefSeq:WP_013436707.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798629.1
COORDINATES: protein motif:HMM:NF040179.1
COORDINATES: protein motif:HMM:NF022580.2
COORDINATES: similar to AA sequence:RefSeq:WP_009242088.1
type IV conjugative transfer system lipoprotein TraV
COORDINATES: similar to AA sequence:RefSeq:WP_009242086.1
COORDINATES: protein motif:HMM:NF015688.2
COORDINATES: similar to AA sequence:RefSeq:WP_009277744.1
type-F conjugative transfer system secretin TraK
COORDINATES: protein motif:HMM:NF017152.2
type IV conjugative transfer system protein TraE
COORDINATES: protein motif:HMM:NF018836.2
type IV conjugative transfer system protein TraL
COORDINATES: similar to AA sequence:RefSeq:WP_009242081.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242080.1
COORDINATES: similar to AA sequence:RefSeq:WP_013723312.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009242078.1
COORDINATES: similar to AA sequence:RefSeq:WP_013723311.1
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009242076.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798634.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242074.1
COORDINATES: protein motif:HMM:TIGR02686.1
GO:0004386 - helicase activity [Evidence IEA]
GO:0006259 - DNA metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009242072.1
protein-disulfide reductase DsbD N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009242071.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013436689.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242069.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798639.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798640.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011798643.1
COORDINATES: similar to AA sequence:RefSeq:WP_013723338.1
COORDINATES: similar to AA sequence:RefSeq:WP_017167681.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242059.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798648.1
COORDINATES: similar to AA sequence:RefSeq:WP_004636925.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242150.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242151.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242153.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011798656.1
COORDINATES: similar to AA sequence:RefSeq:WP_004637279.1
COORDINATES: similar to AA sequence:RefSeq:WP_015159044.1
COORDINATES: similar to AA sequence:RefSeq:WP_012562697.1
COORDINATES: similar to AA sequence:RefSeq:WP_004637284.1
COORDINATES: similar to AA sequence:RefSeq:WP_013723326.1
COORDINATES: similar to AA sequence:RefSeq:WP_013521176.1
type II toxin-antitoxin system YafQ family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_014003226.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_011798664.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798665.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_009242144.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798667.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242146.1
GO:0003896 - DNA primase activity [Evidence IEA]
GO:0006269 - DNA replication, synthesis of RNA primer [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004578784.1
COORDINATES: similar to AA sequence:RefSeq:WP_012430959.1
COORDINATES: protein motif:HMM:NF012894.2
COORDINATES: similar to AA sequence:RefSeq:WP_012806942.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242128.1
COORDINATES: protein motif:HMM:NF014691.2
COORDINATES: similar to AA sequence:RefSeq:WP_009242132.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798623.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242138.1
COORDINATES: similar to AA sequence:RefSeq:WP_013436716.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242099.1
COORDINATES: protein motif:HMM:NF025105.2
COORDINATES: protein motif:HMM:NF009015.0
COORDINATES: similar to AA sequence:RefSeq:WP_009242094.1
conjugal transfer pilus assembly protein TraU
COORDINATES: protein motif:HMM:TIGR02746.1
COORDINATES: protein motif:HMM:NF021212.2
COORDINATES: similar to AA sequence:RefSeq:WP_009242085.1
COORDINATES: similar to AA sequence:RefSeq:WP_006029223.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732837.1
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: protein motif:HMM:NF012422.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013723310.1
COORDINATES: protein motif:HMM:NF012464.2
COORDINATES: protein motif:HMM:NF023505.2
COORDINATES: similar to AA sequence:RefSeq:WP_001439387.1
COORDINATES: similar to AA sequence:RefSeq:WP_008919389.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR00621.2
COORDINATES: protein motif:HMM:NF012372.2
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017424025.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.