Thermomicrobium roseum DSM 5159, complete sequence.
type: Entry
definition: Thermomicrobium roseum DSM 5159, complete sequence.
sequence version: NC_011959.1
sequence date: 2023-03-12
sequence: sequence
division: CON
label: NC_011959.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02603430
keyword: RefSeq
source: Thermomicrobium roseum DSM 5159
organism: Thermomicrobium roseum DSM 5159
taxonomy: Bacteria; Thermomicrobiota; Thermomicrobia; Thermomicrobiales; Thermomicrobiaceae; Thermomicrobium.
reference: 1
references: 19148287
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP001275.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/12/2023 11:52:56\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,624\nCDSs (total) :: 2,567\nGenes (coding) :: 2,543\nCDSs (with protein) :: 2,543\nGenes (RNA) :: 57\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 2\nPseudo Genes (total) :: 24\nCDSs (without protein) :: 24\nPseudo Genes (ambiguous residues) :: 0 of 24\nPseudo Genes (frameshifted) :: 4 of 24\nPseudo Genes (incomplete) :: 16 of 24\nPseudo Genes (internal stop) :: 7 of 24\nPseudo Genes (multiple problems) :: 3 of 24\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000340
sequence length: 2003006
topology: circular
so has quality: SO_0000988
location: 1..2003006
location: region:1-2003006:1
RO_0002162: 309801

NC_011959
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02603430
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum
author: Wu, D.
author: Raymond, J.
author: Wu, M.
author: Chatterji, S.
author: Ren, Q.
author: Graham, J.E.
author: Bryant, D.A.
author: Robb, F.
author: Colman, A.
author: Tallon, L.J.
author: Badger, J.H.
author: Madupu, R.
author: Ward, N.L.
author: Eisen, J.A.
journal: PLoS One 4 (1), e4207 (2009)
pubmed: 19148287

19148287
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Eisen, J.
author: Wu, D.
author: Raymond, J.
author: Wu, M.
author: Chatterji, S.
author: Ren, Q.
author: Graham, J.
author: Bryant, D.
author: Robb, F.
author: Colman, A.
author: Tallon, L.
author: Badger, J.
author: Madupu, R.
author: Ward, N.
journal: Submitted (04-DEC-2008) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2003006:1
position: 2003006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-2003006:1:source
so part of: sequence
organism: Thermomicrobium roseum DSM 5159
mol type: genomic DNA
strain: DSM 5159
culture collection: DSM:5159
type material: type strain of Thermomicrobium roseum

309801
type: Taxonomy
SIO_000068: taxonomy

TRD_RS00005
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00005
so part of: sequence
location: join(2002353..2003006,1..105)
location: region:1-2003006:1
so has part: feature:2002353-2003006:1:exon
so has part: feature:1-105:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:2002353-2003006:1:exon

position:2002353:1
position: 2002353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-105:1:exon

position:105:1
position: 105
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TRD_RS00005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00005
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: nuclease-related domain-containing protein
translation: MRVVRNVGYLKKRQRGTRIMIALGLSGLFGSVALTFLQQLLYVYLAYALLITGFLFFNAGMQQWAKWNRRPRPDELLDSALRRLNDRYTLVHFPEIPEGWRPEHVLIWPGGILNITTRELAGRIVVKGTRWRRLDRLFIRLLTFGGPPLGNPTIECQRQMEALRTFLQQRDLPGADLVEGLIVFLNDQAQLEVIESPITVVTRKELLEAVRMLGTERRLSQGEIDEIVAALSQGEQVEGPISLATRVPAKTK
SIO_010081: TRD_RS00005
subclass of: SO_0000673
so part of: TRD_RS00005
location: join(2002353..2003006,1..105)
location: region:1-2003006:1
so has part: feature:2002353-2003006:1:exon
so has part: feature:1-105:1:exon

WP_041435765.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2002353-2003006:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-105:1:exon

TRD_RS00010
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: holB
locus tag: TRD_RS00010
old locus tag: trd_0002
so part of: sequence
location: 102..1154
location: region:102-1154:1
so has part: feature:102-1154:1:exon
subclass of: SO_0000010

position:102:1
position: 102
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1154:1
position: 1154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:102-1154:1:exon

TRD_RS00010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: holB
locus tag: TRD_RS00010
old locus tag: trd_0002
EC number: 2.7.7.7
inference: COORDINATES: protein motif:HMM:TIGR00678.1
GO component: GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006260 - DNA replication [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA polymerase III subunit delta'
translation: MNATNDLSPSRATPGWPIIGHEGAVRTLARAIESGQVHHAYLLAGPAGIGRTTLAFVFAQALLCEGAAEQRPCGTCRSCQRIARRVHPDVTRIGLDTGAEEAKQVSIDQVRELRASLSLRPLEGAWRVAIVDDAERLSREAADALLKTLEEPPPYAVLVLVAEDAQALPETIRSRCQTIVLQPLPISVVARALEVRGAAPELANRLARETRGRIALAFRLVSDEAARVQREKRVAEVIAAMTEPLAAIGFARRLAEQYRRGRRAEVLSSLQLALELWRDALWLAADPSAPIVHEDARTTLERFARRCGIAGACAGLSATLQALADLEANVQARLALDAAMVTWAEVSRCA
SIO_010081: TRD_RS00010
subclass of: SO_0000673
so part of: TRD_RS00010
location: 102..1154
location: region:102-1154:1
so has part: feature:102-1154:1:exon

WP_012641417.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:102-1154:1:exon

TRD_RS00015
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00015
old locus tag: trd_0004
so part of: sequence
location: 1145..1801
location: region:1145-1801:1
so has part: feature:1145-1801:1:exon
subclass of: SO_0000010

position:1145:1
position: 1145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1801:1
position: 1801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1145-1801:1:exon

TRD_RS00015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00015
old locus tag: trd_0004
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRIAVRRVGSARLEIATVADAVPWVAVPGPLGEEAAAFAGDETALLGWEDETLLPARPLGADETARLAVLIADASVLAGQLAGLLPWRLVGLRPTLAGGLVIEVIASPVDELSEREAELARLLSRPIALVSVGERALTGSTGRPALPIDLEEAAVKRLLAGAPARPGGFPRIGSPVRSPHGSGVVWSVRTRDRTVLVRVGDETVRVPLAELVTDEPGS
SIO_010081: TRD_RS00015
subclass of: SO_0000673
so part of: TRD_RS00015
location: 1145..1801
location: region:1145-1801:1
so has part: feature:1145-1801:1:exon

WP_012641418.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1145-1801:1:exon

TRD_RS00020
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00020
old locus tag: trd_0003
so part of: sequence
location: complement(1796..4120)
location: region:1796-4120:-1
so has part: feature:1796-4120:-1:exon
subclass of: SO_0000010

position:1796:-1
position: 1796
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4120:-1
position: 4120
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1796-4120:-1:exon

TRD_RS00020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00020
old locus tag: trd_0003
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAHVVERSARSAWASPSPYVALQYPIGNGAVERRAFAIVLDPIDPLPSSPEVARRIITLLQHAVWQLGEHPAVEDLCEALTEAFLRANHWLTTLNSGRPSRQWHRFGATCALLSGHDLVLAQVPPGCALVAQDGELYRFPSEDHAASRYATALGNARQIQPALYYTRSAPGDVMLLTNAEYGARLLAAYADSLPGASPARLAELLEELAVDAGDTEPVPAVALRVPEPIRLTRQPVRRLSELLRLLLPEDGNQDSCTARRVDERDIDGTLPDRQTKEARAERPDERADTDAEPVDAIEDQITGAPGWHAQPLDAVAEETEPPRVAKRGGGRPLFELIAGLAIATVTGLAGIWQLLRRRRRPLLPQDEGTFGLPRLERHEDRIRLPDFTPVRRQLPRLPASRLTGLIALGLIGALTTTLVVSVQNGRVSERKQEFAHLYQSAVAERQLAEQATDPTIARAYLATASQRLERAASLGLQPELLAQERAAIERTLDRLLHVERLSATTVQVLGAVPSAPAGIAPRLFFGNGQLYLLTDALYRLDAGGTRLVRLIGPGDTVDGRTVGTLVGAAWADGAPIAFDGNAAYLFDPAAARWSAQPVGTFGAPYQNVAAVGSFAGNLYLLVPQSGQILRFLNGAYANLPQDWTGGLADKELRQATDFEIDGRIHVLLADGRILTFYRGALETTVTPAVEPPVTDAVALAMQPDRPYRYVGTRSGRILRLKADGTLVQQFISGAGVPSLDGLLDLAVDDVQGLAYVLTERGLFLVRLPVPPPGS
SIO_010081: TRD_RS00020
subclass of: SO_0000673
so part of: TRD_RS00020
location: complement(1796..4120)
location: region:1796-4120:-1
so has part: feature:1796-4120:-1:exon

WP_012641419.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1796-4120:-1:exon

TRD_RS00025
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00025
old locus tag: trd_0005
so part of: sequence
location: complement(4299..6422)
location: region:4299-6422:-1
so has part: feature:4299-6422:-1:exon
subclass of: SO_0000010

position:4299:-1
position: 4299
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6422:-1
position: 6422
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4299-6422:-1:exon

TRD_RS00025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00025
old locus tag: trd_0005
inference: COORDINATES: protein motif:HMM:NF024816.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tetratricopeptide repeat protein
translation: MSVFEQFGRWLRRRQGIERNPLYRIAADVVQGRLTLEQAYALAEQPATVARLADGDLWEVLDEATRARLDYPEHALLLNRLVILAARQKGFDRVLMEANLRAADILADLAIESGEPNPTYQREQELHLQEALRAARRIANATGQRRALARLARLARDRGEHERARELLLRQLESGREDTDTIEDVDTALLLGDLARQEANLAAAREFYSRAARSARRIGHNVGMVDALLRQVSILRELGDLDAAYPLLQQAQEAAERLLDRRLQAEIAIQIGALLAEQRRFSKARAALLTALERARAADDLALESRCLIGLAQLERQAGRFRDAADHLNQLAHLELRIGNQRAGIRALLDAAELALEGDQPERALQLLQLAQQQHETNEDTALRQRLLGLSGLAHAALDHRGEALEYLYQAFRLASSTGSTAEQARWLIGTGEVLLQFGELADALLVAKHAADLVRASDDSRLEAQLAVLQGSIAMARGLRQEAMERLSEAVEAAERAHDFVTQERALLLLAELELQEADPHHAIGYLRQALDLARATGNDELRTRLHGRIARLYQSLHYFREAEEHYRAAAQLAQEIDSLPLQARALRGLATVLDASGRADEALATYKQAIALAEQLGDRRAALALHYNAALLLLDRGNDGEARYHLRLAHDLALALGETQLAQNLRDLLGLQPAEPSFPDELSDELVSESPLNPPRRETSPYDFL
SIO_010081: TRD_RS00025
subclass of: SO_0000673
so part of: TRD_RS00025
location: complement(4299..6422)
location: region:4299-6422:-1
so has part: feature:4299-6422:-1:exon

WP_012641420.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4299-6422:-1:exon

TRD_RS00030
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00030
old locus tag: trd_0006
so part of: sequence
location: complement(6419..7444)
location: region:6419-7444:-1
so has part: feature:6419-7444:-1:exon
subclass of: SO_0000010

position:6419:-1
position: 6419
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7444:-1
position: 7444
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6419-7444:-1:exon

TRD_RS00030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00030
old locus tag: trd_0006
inference: COORDINATES: protein motif:HMM:NF012512.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: threonine/serine dehydratase
translation: MGGTDRRHQLEPPTFHDILRARAVVQRYLPPTPLLHSPLLSERLGCQVYLKCEQLQPIGAFKVRGGIYLMSKLSPEERARGVVTASTGNHGQSIAYAARLFGVRAIIYAPEGANPLKVAAMRRLGAEVVLTGRDFDEARLACEARAAADGLRYIHSANEPDLIAGVGTYALEILESVPDLDAIIVPIGAGSGVCGTGIVMKTVDPAIQVIGVQAAGMPVVYESWRKGQLLELADGYTFAEGIATRVAFELPLRIIRERVDDIVLVSDEEIARAMIELLETRIVAEGAGAAALAAAHRIRDRLAGKTVVLVVSGGNVTLETLRWAWELAGAAASEQATEVGR
SIO_010081: TRD_RS00030
subclass of: SO_0000673
so part of: TRD_RS00030
location: complement(6419..7444)
location: region:6419-7444:-1
so has part: feature:6419-7444:-1:exon

WP_012641421.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6419-7444:-1:exon

TRD_RS00035
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00035
so part of: sequence
location: 7740..8543
location: region:7740-8543:1
so has part: feature:7740-8543:1:exon
subclass of: SO_0000010

position:7740:1
position: 7740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8543:1
position: 8543
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7740-8543:1:exon

TRD_RS00035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00035
inference: COORDINATES: protein motif:HMM:NF014567.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-binding protein
translation: MVRALFSAAPSTVLNARITGQCVVRPANASAPPPSFHAVALDSAAGRRAAGCQTPVRPTRSAAALRDRPDRPIPAGEQARSSGRDAEDNGQPISAAARREELGLALALRPLDRAPLLQAVADIVRSLARRSGHIAVSVDVEPGCPFVSADPLRLRQVLLNLLHNALRHTPQGGIVRLAARQSHEEVIVSVADTGSGLPPDMHEQLFDRYHVTSDPERGGGLGLALVRQLVEAQGGRLWVASASTEGTEIAFSLPMAARLASAPPKDR
SIO_010081: TRD_RS00035
subclass of: SO_0000673
so part of: TRD_RS00035
location: 7740..8543
location: region:7740-8543:1
so has part: feature:7740-8543:1:exon

WP_052294014.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7740-8543:1:exon

TRD_RS00040
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00040
old locus tag: trd_0009
so part of: sequence
location: complement(8491..11175)
location: region:8491-11175:-1
so has part: feature:8491-11175:-1:exon
subclass of: SO_0000010

position:8491:-1
position: 8491
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11175:-1
position: 11175
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8491-11175:-1:exon

TRD_RS00040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00040
old locus tag: trd_0009
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MHETGLRLATLLESVFPPRIARWIAAPAQRTPLDAALPAIWWRSQVCSLVLRLSPPHRRGDRAGLLYALHLAGASTARLAVVTGAEESRISDALLAVRAQLSDHWSDPCPEGREGVASWRDRLADRDAWLALLLHTRTCSACRTALATSREVDEQVLERASTVPVPPAPRQRRHPSIVVLVALALLLVFASWRLPGNRALGPPGETAAPSASGPYVWFGSAGPYALAFDLGQRRWLAVTSRLPADAGGFRLLGPDGQLIAAWTPDPPREPRWLDILRWDGTRLARYRWDRQTNRRPLAWLDATTLLIRETPVRHAYEREAEYLERLQRDARVLALDVLQGTETTLLRELVTDAIPSPDGRSVAVVRAMEPFGAGATSRQIAIVERSGTRVLAVADGYVGAGLDHPLWLPDSSALLFARRPPGTPPQLPTPTELVRFTLEGKTAIVVPSSPGTVLRPLALDEQRLFYLALPAGHAEPGELWELDLATSVRRRLGQLDRLNGFLTILPQPDSPLLVAVRTLPASPPLRPESEVTELYRIGEDAPELIAAVPGRWGFDAWGQPLAVVTTTAPSAAASPLVPPTGPLGAGPLALAPGRNWLLAPVPDGRVAIWDATSGIQLTEPWPFRKPHWHPAGLAFVALGELGELQLVARSPDGFWQAVPLALDAPRGDTLDLTVGPDGRLALLTRTDGGELALWAGFPPQALELARWRGPELVGTPCMAWLRTGTLLVAAPLVGGQLLLTSITIEERGRVAVRTLARLRTDRGPAVETCTLALEPSGGALALRAGSRERERIVLLWLAEPDSPLILAEGRASRGLAWSPDGALLAGPLDGALVVHGRNGREVLNQRAAGLADLVWVDTRELWVLERSEAGSAIHRVAIIDLSEAPTRAARPSAG
SIO_010081: TRD_RS00040
subclass of: SO_0000673
so part of: TRD_RS00040
location: complement(8491..11175)
location: region:8491-11175:-1
so has part: feature:8491-11175:-1:exon

WP_012641424.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8491-11175:-1:exon

TRD_RS00045
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: pyrF
locus tag: TRD_RS00045
old locus tag: trd_0010
so part of: sequence
location: 11231..12076
location: region:11231-12076:1
so has part: feature:11231-12076:1:exon
subclass of: SO_0000010

position:11231:1
position: 11231
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12076:1
position: 12076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11231-12076:1:exon

TRD_RS00045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: pyrF
locus tag: TRD_RS00045
old locus tag: trd_0010
EC number: 4.1.1.23
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012641425.1
GO function: GO:0004590 - orotidine-5'-phosphate decarboxylase activity [Evidence IEA]
GO process: GO:0009220 - pyrimidine ribonucleotide biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: orotidine-5'-phosphate decarboxylase
translation: MSFRERLEQTIAQNHSLLCIGLDPDLERFPTGIPRDPEGIVVFNRAIIEATADLVCAYKPNLAFYLQYGAAGIAALATTRQLIPPHIPVILDAKLGDIASTSAAYARAVFETLGFDALTVHPYLGSEALEPFLSTSDRGVFVLVRTSNPGASEIQDLPVGEAGEPLYLWLAERARAWNQRSGNVGLVVGATYPVDLALVRQRCPDLPILAPGIGAQGGDLERAVCAGLTEATAPLLVTVSRSILYADASARFAESARAAARRVRDTIERIRKEVAGQAGHR
SIO_010081: TRD_RS00045
subclass of: SO_0000673
so part of: TRD_RS00045
location: 11231..12076
location: region:11231-12076:1
so has part: feature:11231-12076:1:exon

WP_012641425.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11231-12076:1:exon

TRD_RS00050
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00050
old locus tag: trd_0011
so part of: sequence
location: complement(12112..12651)
location: region:12112-12651:-1
so has part: feature:12112-12651:-1:exon
subclass of: SO_0000010

position:12112:-1
position: 12112
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12651:-1
position: 12651
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12112-12651:-1:exon

TRD_RS00050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00050
old locus tag: trd_0011
inference: COORDINATES: protein motif:HMM:TIGR01382.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type 1 glutamine amidotransferase domain-containing protein
translation: MAELAGKRVAMLLAKDFEDSEATDPKQYLETRGAEVVIVGLDRQPITGKKGTVLQPDKTIDEVTVEEFDALVIPGGGSPENLRIDDRAVAFTRAFVESGKPVAAICHGPQLLISADVLRGRTVTCVKKIRDDVKNAGAIYVDEAVVIDGNLITSRVPADLPFFDQAIAEALARVPARGD
SIO_010081: TRD_RS00050
subclass of: SO_0000673
so part of: TRD_RS00050
location: complement(12112..12651)
location: region:12112-12651:-1
so has part: feature:12112-12651:-1:exon

WP_012641426.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12112-12651:-1:exon

TRD_RS00055
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00055
old locus tag: trd_0012
so part of: sequence
location: complement(12729..13541)
location: region:12729-13541:-1
so has part: feature:12729-13541:-1:exon
subclass of: SO_0000010

position:12729:-1
position: 12729
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13541:-1
position: 13541
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12729-13541:-1:exon

TRD_RS00055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00055
old locus tag: trd_0012
inference: COORDINATES: protein motif:HMM:NF024091.2
GO process: GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter permease subunit
translation: MSWPMVRKAVRDLRWTTFWYAFGMALFIFLMTSFYPTHERQQEQFVELLQQYPEFLFRIFGIDPTQAALFATFAGFMHAQTFGFIWPVTGLLFVVLSGTAVVAQEIERGTADLWLSVPIPRAHLLVSKQVALLSGILVFVLTSEVALAAGAFVFGGDITARGLVQLAVALTCFLIAFGGLATLASSLASERSKAAGIVGGLALLMYLLWVLAGLAEEARWLRYFSLFTVYDPQAAMLGELPWHKPVIQLLVGLAAAVAAQIAFARRDIVA
SIO_010081: TRD_RS00055
subclass of: SO_0000673
so part of: TRD_RS00055
location: complement(12729..13541)
location: region:12729-13541:-1
so has part: feature:12729-13541:-1:exon

WP_012641427.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12729-13541:-1:exon

TRD_RS00060
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00060
old locus tag: trd_0013
so part of: sequence
location: complement(13541..14467)
location: region:13541-14467:-1
so has part: feature:13541-14467:-1:exon
subclass of: SO_0000010

position:14467:-1
position: 14467
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13541-14467:-1:exon

TRD_RS00060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00060
old locus tag: trd_0013
inference: COORDINATES: protein motif:HMM:NF012235.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter ATP-binding protein
translation: MANYPAIAVERLTRSYGARRGVIDLTFQVQPGEIFGFLGPNGAGKTTTIRVLMGFLRPTSGSARIFGLDCWGDATQVKERVGYVPGDVRLWENMTGEQFLDFMAAFRARIDPKRRQMLLERFRVELDRPIKQLSRGNRQKLALVQALLHDPPLLILDEPTSGLDPLMKHEFLAFLVEERERGKTIFLSSHELAEVERVADRVGIIREGRLVAALPIEELRRRRTRPMEVVFAQPIDPRQFADLPGVRVLAVENSGTRFQLGVQDNLPALLRRLSELPVIDLTYAPPDLESVFLAYYQPEHARVGEEDL
SIO_010081: TRD_RS00060
subclass of: SO_0000673
so part of: TRD_RS00060
location: complement(13541..14467)
location: region:13541-14467:-1
so has part: feature:13541-14467:-1:exon

WP_012641428.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13541-14467:-1:exon

TRD_RS00065
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00065
old locus tag: trd_0014
so part of: sequence
location: complement(14659..15312)
location: region:14659-15312:-1
so has part: feature:14659-15312:-1:exon
subclass of: SO_0000010

position:14659:-1
position: 14659
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15312:-1
position: 15312
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14659-15312:-1:exon

TRD_RS00065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00065
old locus tag: trd_0014
inference: COORDINATES: protein motif:HMM:NF012797.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RNA methyltransferase
translation: MGRPITERRLARMREVLARRQPDLTVVLENVHDPHNVSAVLRSCDAVGLLRVHLVYTLEEFPELSENVSGSALKWLELVFHPSIEACYRTLRSQGFTIYTTYLGDPARSVDLYDLDLTKPVALVFGNEQRGVSDEAVAGADGNFVIPMMGMVRSLNISVACAVSLYEALRQRRLAGHYARPKLSPIELEERLQRWLEREGRALPIELRTSDPSAASE
SIO_010081: TRD_RS00065
subclass of: SO_0000673
so part of: TRD_RS00065
location: complement(14659..15312)
location: region:14659-15312:-1
so has part: feature:14659-15312:-1:exon

WP_012641429.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14659-15312:-1:exon

TRD_RS00075
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00075
old locus tag: trd_0016
so part of: sequence
location: 16735..17598
location: region:16735-17598:1
so has part: feature:16735-17598:1:exon
subclass of: SO_0000010

position:16735:1
position: 16735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17598:1
position: 17598
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16735-17598:1:exon

TRD_RS00075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00075
old locus tag: trd_0016
inference: COORDINATES: protein motif:HMM:NF013997.2
GO function: GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CRISPR-associated endoribonuclease Cas6
translation: MRLEVRLEPERSGVLPLGYREALQAMIYRHLPKEIGQPLHDGLYWQAERPLKLFVFSQLHGAVRYRPGEGVEVSGPVWFRFASPDRQLALGLAAGLLQFGRARIANLEFAVREIATLALPSLGERVVVRTLSPITVYRTIAIDGRRRTQYYNPLNEEFAELVVANLLRKAHVLGWSVPGAGEDGSAEAVAEGAARAGESLAVGERPIRIRALGVNPRAKRLERYKGTWIEGWTGRFLLEGPADLLRLALEAGLGAKNSQGFGYVEEVDERSLSLLSRQEQTREEGGA
SIO_010081: TRD_RS00075
subclass of: SO_0000673
so part of: TRD_RS00075
location: 16735..17598
location: region:16735-17598:1
so has part: feature:16735-17598:1:exon

WP_012641431.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16735-17598:1:exon

TRD_RS00080
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00080
old locus tag: trd_0017
so part of: sequence
location: 17595..19292
location: region:17595-19292:1
so has part: feature:17595-19292:1:exon
subclass of: SO_0000010

position:17595:1
position: 17595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19292:1
position: 19292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17595-19292:1:exon

TRD_RS00080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00080
old locus tag: trd_0017
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSLHWTGQPFVDAGLAALLAASGASRLSDVTATHLDIAVRELERILLSDQALGIGLEKSFAKGTLSQVFPNSELVNPSNWSKGPEGVRAKYRTALKEDLARAKEALHAERGDRLCGICGELRPSAGFVMLRRDRFPLLSGAVNFYPGFLSGVALCGLCALALRFSVASLLRVGERGRLWFLHCPSDIVAARIAQEYGWGHFRRLIAANQPLDFYGDWRTSGNSGAILCLLCQLLRKFANQLRTIYQHGIPTVAYVFSNDNRGGYVEGIPVPTSILDFLQSLYLESVDAFDQFERELLRVDTGRDKREEAQRARFVATIADRIVRAEPIVGASLVEQRLLGGWIAHRTYLREVNGMNEAVLALLERTGIALAQHERGKKLIGRLERAPARDVRAVLLDLVREGVLSGRELAALLPPNEPTSAQIVRDVLLAVVYEYQRCNEVGESFPRLVGGWAIPEPDEVVRRLERIAADLIRTLPNRRQWIADLMTARKTAQIRATYLRALRSGAMSLVDFLFLVPLGDVTQAWVLRDYLLAFLFELGREAVPTDIELVEGEEGATDEVSVLAE
SIO_010081: TRD_RS00080
subclass of: SO_0000673
so part of: TRD_RS00080
location: 17595..19292
location: region:17595-19292:1
so has part: feature:17595-19292:1:exon

WP_012641432.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17595-19292:1:exon

TRD_RS00085
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: cas7i
locus tag: TRD_RS00085
old locus tag: trd_0018
so part of: sequence
location: 19365..20432
location: region:19365-20432:1
so has part: feature:19365-20432:1:exon
subclass of: SO_0000010

position:19365:1
position: 19365
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20432:1
position: 20432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19365-20432:1:exon

TRD_RS00085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: cas7i
locus tag: TRD_RS00085
old locus tag: trd_0018
inference: COORDINATES: protein motif:HMM:TIGR02585.1
GO function: GO:0003674 - molecular_function [Evidence IEA]
GO process: GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type I-B CRISPR-associated protein Cas7/Cst2/DevR
translation: MAGRATYPVVTGTVLIEASGAALNNAGQDEGRRTDNAIVVKQLQIGRLRYPYVSGQAWRRWWREVLYTDFGWTPSPVTREAKSAYTEGNPIDYAEDDLFGYMAARKRGKDSDTYRRVSPLRASLLVSVLPNVIVSDFGHFSRNLPPGSDIIPFESEVYSTYLQGVFSIVLSEVGRFAVGAMADISAELAQKNGSRLRKAAVNPNQAEIYELPVRDRVQRVCEALQALARLRGGARLARNLSDVTPVAVIVGFLDGGNAPFQNLFVSDPVNAEQVLLNLERFRSVLSDYTDRFLKVNNDKAVLLGLRPTVLANENEVREVIARKERPFDRVELLDSPRRALERAAELVEQAYASIG
SIO_010081: TRD_RS00085
subclass of: SO_0000673
so part of: TRD_RS00085
location: 19365..20432
location: region:19365-20432:1
so has part: feature:19365-20432:1:exon

WP_012641433.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19365-20432:1:exon

TRD_RS00090
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: cas5
locus tag: TRD_RS00090
old locus tag: trd_0019
so part of: sequence
location: 20455..21162
location: region:20455-21162:1
so has part: feature:20455-21162:1:exon
subclass of: SO_0000010

position:20455:1
position: 20455
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21162:1
position: 21162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20455-21162:1:exon

TRD_RS00090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: cas5
locus tag: TRD_RS00090
old locus tag: trd_0019
inference: COORDINATES: protein motif:HMM:TIGR02593.1
GO function: GO:0003674 - molecular_function [Evidence IEA]
GO process: GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CRISPR-associated protein Cas5
translation: MLDGAVRIRLTALTASFRAPSFVAYQLSLAVPPLATIFGLLSAARGHWVMPHEVPWLAYRLTYAARAMDLEAIYSVERKDAADTPRFKERNIVQREFLVSPELDLFLPAEWRDPFLRPRYQLVLGRSQDLATVSSIGPASLEPVSTGPVTGVLLPAEVVARNGVTAVLQNLPVAFTPDPERAPVRVTMFGLIDGKRSTRGLQFVTIEDGAGWLVRDRESGVVVPLYRQEWILDGR
SIO_010081: TRD_RS00090
subclass of: SO_0000673
so part of: TRD_RS00090
location: 20455..21162
location: region:20455-21162:1
so has part: feature:20455-21162:1:exon

WP_012641434.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20455-21162:1:exon

TRD_RS00095
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00095
old locus tag: trd_0020
so part of: sequence
location: 21152..23473
location: region:21152-23473:1
so has part: feature:21152-23473:1:exon
subclass of: SO_0000010

position:21152:1
position: 21152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23473:1
position: 23473
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21152-23473:1:exon

TRD_RS00095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00095
old locus tag: trd_0020
inference: COORDINATES: protein motif:HMM:TIGR01587.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CRISPR-associated helicase/endonuclease Cas3
translation: MVGEPLAKSGDPPITLRQHTLEVLAYVEQVIPAYRALWSRVLDSRSVDHLGRALPLAAAGHDLGKAALGFQRSLQERGFRWEFRHEVLSAALLLASGHATGDPGQLAIAAVLTHHRDLTEERLWRDCGVPQLPRPQFLEKAQRQFRERAAELGPFWEWIVRFSQEVEVLRTDQWPCSPHDLEPPAEFLRSLQERADRLHAFRSAEGLLLTLSRGWLLAADHAASAGIPRFVSTIPTEWRARHAERLAHSRAQGDGQLRAFQRALGEYEGSALLIAPTGAGKTDAAIRWIARNRIGGERIFYILPYQASIEAMGQTLERLFGRETVGTLHARTLEVAFQRYFSGDDYEEAYQAARQDAELNRLVHKPIKVTTPFQLIKWLFGLPRFEVGLAEMVGALVIFDEIHAYDAHVTALILELVRVLRELGARCLFMSATFPDFLRQYIEDAYAQPLRLFRLDQPPAHDTWAERFLAQARHRVEWTADPLEELVDLVVEAAQNGERVLVVANRVQQAQALYQRLVECVPDGLQLLHARLMRRDRVAREQRILAALRGESPEPVRVLVATQVVEVSLDISFDRLVTEVAPVDDLLQRFGRVNRYYEHNSPRPIVISRTYGDALYYVYDRERLERTLEEAPPHGHALDAFDAEQWVERVYREGWTTNEGRRFEQALASFRAVIEGLRPLQHADMAYEDFYRLFQGAEVLPSPFQEEYLRYQIEGKHLLAQQLLVPVPYGTFWKLHRAGRISQLKDGTLVASVQYDPDLGLLPEVADLDAVIV
SIO_010081: TRD_RS00095
subclass of: SO_0000673
so part of: TRD_RS00095
location: 21152..23473
location: region:21152-23473:1
so has part: feature:21152-23473:1:exon

WP_012641435.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21152-23473:1:exon

TRD_RS00100
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: cas4
locus tag: TRD_RS00100
old locus tag: trd_0021
so part of: sequence
location: 23488..24075
location: region:23488-24075:1
so has part: feature:23488-24075:1:exon
subclass of: SO_0000010

position:23488:1
position: 23488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24075:1
position: 24075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23488-24075:1:exon

TRD_RS00100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: cas4
locus tag: TRD_RS00100
old locus tag: trd_0021
inference: COORDINATES: protein motif:HMM:NF014040.2
GO function: GO:0004518 - nuclease activity [Evidence IEA]
GO process: GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CRISPR-associated protein Cas4
translation: MDQIVTGTLMSYVGICDRKIWLAGHAIEGYRDHELLALGRLLAESAYPRERKELALPGMKVDVLRRRPADADEDEALVIGEVKRSPRAQHAQRLQLGYYLLRLREAGLHVRGELRYPEQRRVEPVELTPELEQAVRSAIARVEELLAQPQPPPPVRIAACANCAYFEFCWVSEEPATADSPRRRTRSAASADGKR
SIO_010081: TRD_RS00100
subclass of: SO_0000673
so part of: TRD_RS00100
location: 23488..24075
location: region:23488-24075:1
so has part: feature:23488-24075:1:exon

WP_012641436.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23488-24075:1:exon

TRD_RS00105
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: cas1b
locus tag: TRD_RS00105
old locus tag: trd_0022
so part of: sequence
location: 24072..25061
location: region:24072-25061:1
so has part: feature:24072-25061:1:exon
subclass of: SO_0000010

position:24072:1
position: 24072
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25061:1
position: 25061
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24072-25061:1:exon

TRD_RS00105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: cas1b
locus tag: TRD_RS00105
old locus tag: trd_0022
inference: COORDINATES: protein motif:HMM:TIGR03641.1
GO function: GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]
GO process: GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type I-B CRISPR-associated endonuclease Cas1b
translation: MTKPIYVFSSGRLARHQNTIVLETEEGKRFLPVEQVSELYVFGEVDLNKRFLEFIAREGVLLHFFNRYGFYTGTFYPREYLSSGALILRQVEHYLDQAKRLTLARAFVHGALRNIRTVLLYYRRRGVDVQAAVEIIERARAGIEEAGTTAELMALEGQAREAYYAVWPAIIEAEFPFGPRTRRPPRDETNALISFGNSLLYTAVLAQIYQTHLDPRIGYLHETNFRRHTLNLDVAEIFKPVLVDRLIFRLVNRGQLQRRHFVTGAEGVFLDDDGRKLVVEAWEQTLQETYRHPSLNRSVSYRTTLRLELYKLEKHLLGEQAYVPFALRG
SIO_010081: TRD_RS00105
subclass of: SO_0000673
so part of: TRD_RS00105
location: 24072..25061
location: region:24072-25061:1
so has part: feature:24072-25061:1:exon

WP_012641437.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24072-25061:1:exon

TRD_RS00110
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: cas2
locus tag: TRD_RS00110
old locus tag: trd_0024
so part of: sequence
location: 25126..25389
location: region:25126-25389:1
so has part: feature:25126-25389:1:exon
subclass of: SO_0000010

position:25126:1
position: 25126
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25389:1
position: 25389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25126-25389:1:exon

TRD_RS00110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: cas2
locus tag: TRD_RS00110
old locus tag: trd_0024
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012844126.1
GO function: GO:0004521 - endoribonuclease activity [Evidence IEA]
GO process: GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CRISPR-associated endonuclease Cas2
translation: MYVIVAYDVGVERVARVLKICRRYLTWVQNSLLEGELTPAQLRRLQQELERTIDRENDSVQFYILPQASVAKRVTLGLVKNQPSQVI
SIO_010081: TRD_RS00110
subclass of: SO_0000673
so part of: TRD_RS00110
location: 25126..25389
location: region:25126-25389:1
so has part: feature:25126-25389:1:exon

WP_012641438.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25126-25389:1:exon

TRD_RS00115
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00115
old locus tag: trd_0023
so part of: sequence
location: complement(25386..26456)
location: region:25386-26456:-1
so has part: feature:25386-26456:-1:exon
subclass of: SO_0000010

position:25386:-1
position: 25386
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26456:-1
position: 26456
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25386-26456:-1:exon

TRD_RS00115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00115
old locus tag: trd_0023
inference: COORDINATES: protein motif:HMM:NF014788.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AIR synthase family protein
translation: MGLELPTLGKISGEVFDQIILPHLGAPSPQVLVPPQHGVDVGIVDLGNGLVMAVTTDPVFVVPAYGWERAAWFAIHILASDAATSGLAPAFLAIDLNLPLAITAEELSILWTTMHRVCAELGIAIIAGHTARYEGCHYPMVGGAAVMAIGPADRYVTPKMARVGDLVVVTKGAAIEAAGLFAVSFPERIAAAYGREFADRAQELFWQMSVVADALTAVSIGVRDDGVTAMHDATECGVYGGLVEVAEASGVGLRIEQERIILREDVAKICQLFGMDPYAAISEGTLIITVRPHKVDALLAALGAKGIAASVVGEVVPPERGLTLVVDGKERPLEHPRVDPFWAAFGRAMAEAERGS
SIO_010081: TRD_RS00115
subclass of: SO_0000673
so part of: TRD_RS00115
location: complement(25386..26456)
location: region:25386-26456:-1
so has part: feature:25386-26456:-1:exon

WP_012641439.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25386-26456:-1:exon

TRD_RS00120
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: pdxT
locus tag: TRD_RS00120
old locus tag: trd_0025
so part of: sequence
location: complement(26685..27293)
location: region:26685-27293:-1
so has part: feature:26685-27293:-1:exon
subclass of: SO_0000010

position:26685:-1
position: 26685
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27293:-1
position: 27293
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26685-27293:-1:exon

TRD_RS00120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: pdxT
locus tag: TRD_RS00120
old locus tag: trd_0025
EC number: 3.5.1.2
EC number: 4.3.3.6
inference: COORDINATES: protein motif:HMM:NF013350.2
GO function: GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]
GO process: GO:0042823 - pyridoxal phosphate biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: pyridoxal 5'-phosphate synthase glutaminase subunit PdxT
translation: MAVTIGVLALQGDFAEHLTALARLGIAAHEVRQPRDLAGIDGLIIPGGESTTIGRLLERTELLGVIRDLAQRGMPLWGTCAGLILLAREVTAETRARHQPLLGLLDIVVRRNAFGSQRESFECDLVVEPLGPPPLRAVFIRAPLIDAIGPGVAVLACLPDGRPVAVRQGSIIGTAFHPELTNDLRFHRWFCELAERATVHTV
SIO_010081: TRD_RS00120
subclass of: SO_0000673
so part of: TRD_RS00120
location: complement(26685..27293)
location: region:26685-27293:-1
so has part: feature:26685-27293:-1:exon

WP_012641440.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26685-27293:-1:exon

TRD_RS00125
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: pdxS
locus tag: TRD_RS00125
old locus tag: trd_0026
so part of: sequence
location: complement(27304..28206)
location: region:27304-28206:-1
so has part: feature:27304-28206:-1:exon
subclass of: SO_0000010

position:27304:-1
position: 27304
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28206:-1
position: 28206
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27304-28206:-1:exon

TRD_RS00125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: pdxS
locus tag: TRD_RS00125
old locus tag: trd_0026
inference: COORDINATES: protein motif:HMM:NF003215.0
GO function: GO:0003824 - catalytic activity [Evidence IEA]
GO process: GO:0042823 - pyridoxal phosphate biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: pyridoxal 5'-phosphate synthase lyase subunit PdxS
translation: MEQTNGTIEQATWRTKVGLAQMLKGGVIMDVVTPEQAQIAEEAGAVAVMALERVPADIRREGGVARMADPDRILRIKEAVTIPVMAKVRIGHFVEAQILEAIGVDFIDESEVLTPADDRYHIDKHVFRVPFVCGARDLGEALRRIAEGAAMIRSKGEAGTGNIVEAVRHLRDILDGIRRLAALPREELVTAAKELGAPYELVRQVAEQGRLPVVLFCAGGVATPADAALVMQLGAEGVFVGSGIFKSENPFARAKAIVEAVTHYRDPEVLARVSRGLGEAMPGIDLATLAPEQRLAPRGW
SIO_010081: TRD_RS00125
subclass of: SO_0000673
so part of: TRD_RS00125
location: complement(27304..28206)
location: region:27304-28206:-1
so has part: feature:27304-28206:-1:exon

WP_012641441.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27304-28206:-1:exon

TRD_RS00130
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00130
old locus tag: trd_0027
so part of: sequence
location: complement(28233..29735)
location: region:28233-29735:-1
so has part: feature:28233-29735:-1:exon
subclass of: SO_0000010

position:28233:-1
position: 28233
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29735:-1
position: 29735
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28233-29735:-1:exon

TRD_RS00130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00130
old locus tag: trd_0027
inference: COORDINATES: protein motif:HMM:NF012382.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PLP-dependent aminotransferase family protein
translation: MQLRLDRTSRVPLYRQLAEQLRRRILSGELPPGTRLPPERRLAATLGINRSTVVSAYRELAAAGLISGHVGRGTVVVDPAQHRESRAPAGGVPWPQLFAPLATALYDPALEDAMIAAARPDVISFATGQPAPECYPIATVRQLLDEALHREGARLLQYCPSEGYPPLREAIASWSQQAGIRCTAENVLVVSGSQQGLYLVARALVEPGDLVAVESPTYAGALQIFRAVGARLLPIPVDEFGMRVSLLERALEHRRPKLIYTLPTFQNPSGATLALDRRLHLLDLAARAGIPVVEDDPYRELWYDAPPPPPLAALDQAGTVISLTTVSKILFPGFRIGWIIAPWPVIRQLALVKQLVDLDTNPLMQWAIWAFLERRLLPPHLEELRRVHRDRRDLLLASLAAEANGALHCRVPAGGLYLWCELADGIRARDLVPEAARQGVAIVPGESFFVDPAQGRSFVRLNFTYPAPAALVEGAKRLGRALSALREARALLAQASSPIV
SIO_010081: TRD_RS00130
subclass of: SO_0000673
so part of: TRD_RS00130
location: complement(28233..29735)
location: region:28233-29735:-1
so has part: feature:28233-29735:-1:exon

WP_041435779.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28233-29735:-1:exon

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 309801
inference: COORDINATES: alignment:crt:1.2
inference: COORDINATES: alignment:pilercr:v1.02
rpt family: CRISPR
rpt type: direct
rpt unit range: 31267..31296
rpt unit seq: gtttcgacagtacctatgagggcttgaaac
so part of: sequence
location: 31267..36269
location: region:31267-36269:1
so has part: feature:31267-36269:1:region

position:31267:1
position: 31267
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36269:1
position: 36269
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31267-36269:1:region

TRD_RS00150
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00150
so part of: sequence
location: 36851..36921
location: region:36851-36921:1
so has part: feature:36851-36921:1:exon
subclass of: SO_0000663

position:36851:1
position: 36851
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36921:1
position: 36921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36851-36921:1:exon

TRD_RS00150
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 309801
locus tag: TRD_RS00150
product: tRNA-Gln
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:36883..36885,aa:Gln,seq:ttg)
SIO_010081: TRD_RS00150
subclass of: SO_0000673
so part of: TRD_RS00150
location: 36851..36921
location: region:36851-36921:1
so has part: feature:36851-36921:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:36851-36921:1:exon

TRD_RS00155
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: glmU
locus tag: TRD_RS00155
old locus tag: trd_0031
so part of: sequence
location: 36971..38383
location: region:36971-38383:1
so has part: feature:36971-38383:1:exon
subclass of: SO_0000010

position:36971:1
position: 36971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38383:1
position: 38383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36971-38383:1:exon

TRD_RS00155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: glmU
locus tag: TRD_RS00155
old locus tag: trd_0031
EC number: 2.3.1.157
EC number: 2.7.7.23
inference: COORDINATES: protein motif:HMM:TIGR01173.1
GO component: GO:0005737 - cytoplasm [Evidence IEA]
GO function: GO:0019134 - glucosamine-1-phosphate N-acetyltransferase activity [Evidence IEA]; GO:0003977 - UDP-N-acetylglucosamine diphosphorylase activity [Evidence IEA]
GO process: GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU
translation: MDEKSDSIQTRPAESLAAVVLAGGLGTRMRSRLPKEFHPLAGRPLLRYVLDAVEALPVAQRILVTSPAKAALCSQLGADWEIALQEEPLGTGHALGCALPLLRPDIRWVLLVFGDHPLLRGEDLARLLSAALQQRPLAAVLTTLLPDPAAYGRIQRDPDGRVTGVIEAREDANHYAGPVEVVSGATIYWRAWLEDALPRLPRSPSGEYYHTALIGLAAAERSGEAVITVVAPPETALGVNDRVDLARAEAILRDRIVQAHQRAGVTIVDPATTWIEPTVEIEPDARIEPFTILAGRTRIAQGARIGPHAVVHDSVVGPDSTVVASVLESAVLGARVRVGPYSHLRPGTIVEDDVHIGNFAELKNAHVGRATRIGHVSYIGDAELGERVNIGAGTVTCNFDGVAKHRTVIEDEAFIGSDTMLVAPVQVGRGARTGAGSVVTKDVAPGTTVVGVPARPVGARRQRRTGETGA
SIO_010081: TRD_RS00155
subclass of: SO_0000673
so part of: TRD_RS00155
location: 36971..38383
location: region:36971-38383:1
so has part: feature:36971-38383:1:exon

WP_226980699.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:36971-38383:1:exon

TRD_RS00160
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00160
old locus tag: trd_0032
so part of: sequence
location: 38388..39326
location: region:38388-39326:1
so has part: feature:38388-39326:1:exon
subclass of: SO_0000010

position:38388:1
position: 38388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39326:1
position: 39326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38388-39326:1:exon

TRD_RS00160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00160
old locus tag: trd_0032
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015922324.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribose-phosphate pyrophosphokinase
translation: MDGRLQIFAGNSNPRLAQAIVGVLETPLGRAEVSSWSDGETRVRLEENVRGSDVFVIQSLCTPVNQNIMELLIILDAVKRASAARITAVIPYYAYARQEKKTAGREPISAKLLANLLTTAGADRVLTIDLHAPAIEGFFDIPVDHLRATPILAAHFRRLGLTDFVVVSPDAGAVVRADEFRRRAGGSLAIISKKRPGPEVAEVLEMVGDVAGRDAVIVDDIIATGGTLLQAAELLRERGARRIFAAAVHGVFAGQALERIQASPIEKVFVTDTIPLPEGMCTDKVEVLTVAPLLAEAIMRIHKDLSISALFT
SIO_010081: TRD_RS00160
subclass of: SO_0000673
so part of: TRD_RS00160
location: 38388..39326
location: region:38388-39326:1
so has part: feature:38388-39326:1:exon

WP_012641446.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:38388-39326:1:exon

TRD_RS13385
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS13385
old locus tag: trd_0033
so part of: sequence
location: 39368..40630
location: region:39368-40630:1
so has part: feature:39368-40630:1:exon
subclass of: SO_0000010

position:39368:1
position: 39368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40630:1
position: 40630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:39368-40630:1:exon

TRD_RS13385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS13385
old locus tag: trd_0033
inference: COORDINATES: protein motif:HMM:NF015436.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hemolysin family protein
translation: MSSPWTEAILFVVLAALFFAAALADLASCLPARRSLREFLAELAETQNGNGENTLEQLRVARPAIRLVQATTFLGLTVLALRIGHRWWPKHELAVAVLIAFVALLVLASAAPMALLERRYPLTSARFRLLAGLLSRLGAPLRVLSELLERPLAALIPPAPAPAVPSAAAPPAHEEVVEEAEELIERVLRLDRLTARDIMVPRTDIVAVPFELSVRDAIAVARQTRHSRLPVYQGTIDRIVGIVHVRDLLRFALESAEGIKVGDVMREAYFIPESKRVDELLRDLQHQRVHMAIVVDEFGGTAGIVTIEDVLEEIVGEIQDEYDAEAPLVERLSADEAIVDGRISLEEIADIFGVSLEEEESSTIGGLVQAHLGRIPQPGESVRVDGLEVTVLEVAGNRVRKLSVRRVAASVSASDEDERS
SIO_010081: TRD_RS13385
subclass of: SO_0000673
so part of: TRD_RS13385
location: 39368..40630
location: region:39368-40630:1
so has part: feature:39368-40630:1:exon

WP_012641447.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:39368-40630:1:exon

TRD_RS00170
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00170
old locus tag: trd_0035
so part of: sequence
location: 40637..41188
location: region:40637-41188:1
so has part: feature:40637-41188:1:exon
subclass of: SO_0000010

position:40637:1
position: 40637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41188:1
position: 41188
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40637-41188:1:exon

TRD_RS00170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00170
old locus tag: trd_0035
EC number: 6.3.4.15
inference: COORDINATES: protein motif:HMM:TIGR00121.1
GO function: GO:0004077 - biotin-[acetyl-CoA-carboxylase] ligase activity [Evidence IEA]
GO process: GO:0036211 - protein modification process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: biotin--[acetyl-CoA-carboxylase] ligase
translation: MVAWVVHRYQRVTSTMDIAADLAAQGAPAGTVVLAEEQTEGRGREGRRWLAPPGTSLLFTVIARPPFAVVQDERLAVRVAEHVAAAIAATCGLRPSIKEPNDLLVKGRKLVGILLQSRVRAEVLEYLLLGIGINVNIPADCLPLPTATSLLVELGHPVDRDRLLAAVLDQLARDERLFPPTVR
SIO_010081: TRD_RS00170
subclass of: SO_0000673
so part of: TRD_RS00170
location: 40637..41188
location: region:40637-41188:1
so has part: feature:40637-41188:1:exon

WP_012641448.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:40637-41188:1:exon

TRD_RS00175
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00175
old locus tag: trd_0034
so part of: sequence
location: complement(41175..42314)
location: region:41175-42314:-1
so has part: feature:41175-42314:-1:exon
subclass of: SO_0000010

position:41175:-1
position: 41175
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:42314:-1
position: 42314
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41175-42314:-1:exon

TRD_RS00175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00175
old locus tag: trd_0034
inference: COORDINATES: protein motif:HMM:NF012517.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LLM class flavin-dependent oxidoreductase
translation: MKDARLALALVVPAQPPLASVLGLVRLARLLRFDAVMVWDHLQDFVPRVLWSPRTTWIARLRRSPHPYYDFASLLGRLSAHAGRLRLGVGVTDPIRRHPVLLAQTALTLAHLTRRPPIIGIGAGEAENLEPYGFPFDRPVTRLEEALAILRACLDTPGTIRFAGRFYQITDGVFELTAPPRRRPEIWLGAHGPRMLELTGRFADGWYPNWIDSPERYAARLAQVRQAAERAGRDPTQIVPALQAPVLLAPTENAARRLLHHPALRLTGLLRPADEWRELGLEHPLGEHFRGYLDFIPERVDPHALRAALRAVPPELVERSFLWGTPEQVLARIRDYREAGLRFLGLLPVSALASPQVAAWTVFTLWRLRRSLARELTER
SIO_010081: TRD_RS00175
subclass of: SO_0000673
so part of: TRD_RS00175
location: complement(41175..42314)
location: region:41175-42314:-1
so has part: feature:41175-42314:-1:exon

WP_012641449.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:41175-42314:-1:exon

TRD_RS14545
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS14545
old locus tag: trd_0036
so part of: sequence
location: 42582..42833
location: region:42582-42833:1
so has part: feature:42582-42833:1:exon
subclass of: SO_0000010

position:42582:1
position: 42582
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42833:1
position: 42833
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42582-42833:1:exon

TRD_RS14545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS14545
old locus tag: trd_0036
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRRMEKVAQLSCQVRELWAVSSELVAAHRAALARFAQGEQAIAARRETVEAEGDQARALRETVRQQTEQLRATVEEHARPIAE
SIO_010081: TRD_RS14545
subclass of: SO_0000673
so part of: TRD_RS14545
location: 42582..42833
location: region:42582-42833:1
so has part: feature:42582-42833:1:exon

WP_143714576.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:42582-42833:1:exon

TRD_RS14550
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS14550
so part of: sequence
location: 43071..43439
location: region:43071-43439:1
so has part: feature:43071-43439:1:exon
subclass of: SO_0000010

position:43071:1
position: 43071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43439:1
position: 43439
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43071-43439:1:exon

TRD_RS14550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS14550
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLEKITERPSGDRAEQLRRLVGGAVFDAVLETDLLVRERLRQDPSVGLWRVVAVSGVVDRTDGERVATRALVLQPALRRVVPLVVGEGTTEGAMGRADRLDVVTLPNGRRQDGKQEEARWVA
SIO_010081: TRD_RS14550
subclass of: SO_0000673
so part of: TRD_RS14550
location: 43071..43439
location: region:43071-43439:1
so has part: feature:43071-43439:1:exon

WP_143714577.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:43071-43439:1:exon

TRD_RS00185
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00185
old locus tag: trd_0039
so part of: sequence
location: 43718..44929
location: region:43718-44929:1
so has part: feature:43718-44929:1:exon
subclass of: SO_0000010

position:43718:1
position: 43718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44929:1
position: 44929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43718-44929:1:exon

TRD_RS00185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00185
old locus tag: trd_0039
inference: COORDINATES: protein motif:HMM:NF012656.2
GO function: GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: acyl-CoA dehydrogenase family protein
translation: MDFEFTPEQIQVRDMVREWAQREVAPYIREWDAKGEYHPEIYRRMGELGLLGLPIPERYGGGGFDYIALALACEELEAVDTFLRVAISVHVGLNSLTLLQWGTEEQKQRWLVPQARGEKLATFALTEPGAGSDAGHIQTRAVRDGDSYILNGEKMWISLANTADHFLVFATLDPALGHRGLCAFMVERGMPGLTTGSIHGKLGVRAGDTGWISLQNVRVPAENMIGEPGEGFKIAMSAIDQGRFTVAAGACGLIRACLEASVKYCHERQAFGQEIGRFQLVQQMIAKMVRGYETSRLLVFRAAELKNRGIRNTRETSLAKWHACDCAFEAANDAVQIHGAYGYSSEYPVERYFRNSRGAVIYEGTREIHTLLQAEYALGYRVDKLLRCPQPPAQGYETVVARG
SIO_010081: TRD_RS00185
subclass of: SO_0000673
so part of: TRD_RS00185
location: 43718..44929
location: region:43718-44929:1
so has part: feature:43718-44929:1:exon

WP_012641453.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:43718-44929:1:exon

TRD_RS00190
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00190
old locus tag: trd_0040
so part of: sequence
location: 44931..45467
location: region:44931-45467:1
so has part: feature:44931-45467:1:exon
subclass of: SO_0000010

position:44931:1
position: 44931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:45467:1
position: 45467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44931-45467:1:exon

TRD_RS00190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00190
old locus tag: trd_0040
inference: COORDINATES: protein motif:HMM:NF012360.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: gamma carbonic anhydrase family protein
translation: MRPLVIPYRGKQPQLAPDVFVAPTAVVIGDVVVGSRSSLWFGVVLRGDIGPIRIGQRVNLQEGVIVHLDEGFPVVIEDDVTIGHGAIVHGAQIAAGAQIGMGAILLTGSRVGAGAIVAAGALVPEGMEVPAGTVAVGIPARIRREVTTEERAELLERAQRYAQRGEEFRRLLAGGGEA
SIO_010081: TRD_RS00190
subclass of: SO_0000673
so part of: TRD_RS00190
location: 44931..45467
location: region:44931-45467:1
so has part: feature:44931-45467:1:exon

WP_012641454.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:44931-45467:1:exon

TRD_RS00195
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00195
old locus tag: trd_0041
so part of: sequence
location: 45464..46237
location: region:45464-46237:1
so has part: feature:45464-46237:1:exon
subclass of: SO_0000010

position:45464:1
position: 45464
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:46237:1
position: 46237
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:45464-46237:1:exon

TRD_RS00195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00195
old locus tag: trd_0041
inference: COORDINATES: protein motif:HMM:NF012596.2
GO function: GO:0003824 - catalytic activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: enoyl-CoA hydratase-related protein
translation: MSVRVEREGAITLVTVERPERLNALDTATLRALLAAVQELATEEAIAVVVLTGAGDRAFIAGADISEMVEKSPAEALAFAELGHAVCRAIEEAPQPYIAAVNGYALGGGCEIALACDIRLASERAVFAQPEVTLGIPPGWGGSQRLPRVVPPGIARELLYTGRRVDAQEALRIGLVNAVYPADQLLERARELANRIAANGPLAVRLTKAAVRFGLEQGLEAGLTYERQVFAYAFTTEDQREGMRAFLEKRRPAFRGR
SIO_010081: TRD_RS00195
subclass of: SO_0000673
so part of: TRD_RS00195
location: 45464..46237
location: region:45464-46237:1
so has part: feature:45464-46237:1:exon

WP_012641455.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:45464-46237:1:exon

TRD_RS00200
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00200
old locus tag: trd_0042
so part of: sequence
location: 46271..47035
location: region:46271-47035:1
so has part: feature:46271-47035:1:exon
subclass of: SO_0000010

position:46271:1
position: 46271
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47035:1
position: 47035
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:46271-47035:1:exon

TRD_RS00200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00200
old locus tag: trd_0042
inference: COORDINATES: protein motif:HMM:NF013200.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: electron transfer flavoprotein subunit beta/FixA family protein
translation: MKIAVLVKQVPDPNAVRFDPRLGDLVPGIQEVANEYDLYALEAALRLREQVGGQIVVASVGPARDALNRALAMGADRAVSIEGEGLPGDSWVTATVLAAWLRGEQPDVIWCGQETSDSGTGNVGPAVAALLDIPLVSNVVGWEFRDGVFTIEREIEDGHQFQEVAPPLVLCALSALPQPRLPTLRGIMDARRKPVERLGPADLGLDASELVPLVSWAGLSQPEAKAAGIVVQDVSPDEAAERLLVFLEARGLLG
SIO_010081: TRD_RS00200
subclass of: SO_0000673
so part of: TRD_RS00200
location: 46271..47035
location: region:46271-47035:1
so has part: feature:46271-47035:1:exon

WP_012641456.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:46271-47035:1:exon

TRD_RS00205
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00205
old locus tag: trd_0043
so part of: sequence
location: 47054..48046
location: region:47054-48046:1
so has part: feature:47054-48046:1:exon
subclass of: SO_0000010

position:47054:1
position: 47054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:48046:1
position: 48046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:47054-48046:1:exon

TRD_RS00205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00205
old locus tag: trd_0043
inference: COORDINATES: protein motif:HMM:NF013200.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: electron transfer flavoprotein subunit alpha/FixB family protein
translation: MAGGGLLVVVETAQGVARPAALELFGAASRASAALGPVTALVVGHGVSGAAEQVARLGVARVLVVDEPAFAEPVAERLARAVQVAWEQVEPALVLVPGTTLGRDTAALVAAERRVPHLVDIVALEVTPEAFVATRPVYQSKLVTTVRAGRERAAVVTVRSGAFRPPEPGEAGATIEPLAVGLEERQQRVRVTRMVDKPRGQVDLESAPVVVVGGRGIGGPEGFAQLAELAELLGGALGCTRAVSDLGWRPHYEQIGQTGKQVRPKLYLGVGVSGAVQHTVAMQGSETIVVINRDPNAPLVKMADLAVIGDWSEIVPRLIARLRERRGNGA
SIO_010081: TRD_RS00205
subclass of: SO_0000673
so part of: TRD_RS00205
location: 47054..48046
location: region:47054-48046:1
so has part: feature:47054-48046:1:exon

WP_012641457.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:47054-48046:1:exon

TRD_RS00210
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00210
old locus tag: trd_0044
so part of: sequence
location: 48043..49341
location: region:48043-49341:1
so has part: feature:48043-49341:1:exon
subclass of: SO_0000010

position:48043:1
position: 48043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:49341:1
position: 49341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:48043-49341:1:exon

TRD_RS00210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00210
old locus tag: trd_0044
inference: COORDINATES: protein motif:HMM:NF013646.2
GO function: GO:0016491 - oxidoreductase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: FAD-dependent oxidoreductase
translation: MSQERVEVIVVGAGPAGVAAALTLARAGVEVVVLERGAYPGAKNVMGGILYRQPTEELVPGFWREAPLERAIVEQRYLLLTDEDAIGLSYRTPVFGQPPYNAFSVLRAEWDRWFAQQAEAAGALIATEVTVEDLLWEDGRIVGVRAGEQGDLVADVVVIADGANSLLAQKAGLARDARPEEQALVAKELLRLPAEEIDRRFAVPPGQGVAIEAFGAATGGLLGYGFIYTNRETLSIGTGALLSDLIAYEVNVSDLLERFKQHPAIAPLLEGAELVEYSAHLIPEGGWRALPTLFTDGALVVGDAAGFVNPLSREGSNFAMISGKLAAETILEARQTGDYSALALSRYWEKLEASFILPDLELIRNVTPFFHARPYLLQDVPAALAHAVRHYLTVDSTPKARKYREILRELGRELRPARLLRDGLAALRELAS
SIO_010081: TRD_RS00210
subclass of: SO_0000673
so part of: TRD_RS00210
location: 48043..49341
location: region:48043-49341:1
so has part: feature:48043-49341:1:exon

WP_012641458.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:48043-49341:1:exon

TRD_RS00215
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00215
old locus tag: trd_0045
so part of: sequence
location: 49406..50275
location: region:49406-50275:1
so has part: feature:49406-50275:1:exon
subclass of: SO_0000010

position:49406:1
position: 49406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:50275:1
position: 50275
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49406-50275:1:exon

TRD_RS00215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00215
old locus tag: trd_0045
inference: COORDINATES: protein motif:HMM:NF014704.2
GO component: GO:0016020 - membrane [Evidence IEA]
GO process: GO:0009403 - toxin biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CvpA family protein
translation: MTLYLALDVLLLVLLALFVPVGFWRGAARELVVTLGILLGFALGEFWAQPWGLDLAERTGLGEGAASFLAAVLALVACTFLIGYGVSSVILTPQPGMLGRLLGAVIALANGMLVLGFALRAIRLYLLGGAPSGLFEQAIVARLLSESMPWVLLAGALLGLPLIVLAAVLGARAVEEEVEPVRREQDFALQHTPTRPLPPRLPFVRHQSEVAYKTEPARPAEEPTRPLRAAPAAPESGGSRRDDIAEQETAVLARPAAETAPRPVDNRCPYCHADISDAKVFCPRCGRVL
SIO_010081: TRD_RS00215
subclass of: SO_0000673
so part of: TRD_RS00215
location: 49406..50275
location: region:49406-50275:1
so has part: feature:49406-50275:1:exon

WP_012641459.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:49406-50275:1:exon

TRD_RS14780
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS14780
old locus tag: trd_0046
so part of: sequence
location: 50507..50677
location: region:50507-50677:1
so has part: feature:50507-50677:1:exon
subclass of: SO_0000010

position:50507:1
position: 50507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:50677:1
position: 50677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:50507-50677:1:exon

TRD_RS14780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS14780
old locus tag: trd_0046
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGFIGMQPEPLTPRGRAIVLTAVILALLFIVVWGAGIVLMLHNPGQGTVCLSGRCW
SIO_010081: TRD_RS14780
subclass of: SO_0000673
so part of: TRD_RS14780
location: 50507..50677
location: region:50507-50677:1
so has part: feature:50507-50677:1:exon

WP_012641460.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:50507-50677:1:exon

TRD_RS00220
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00220
old locus tag: trd_0047
so part of: sequence
location: complement(50684..51187)
location: region:50684-51187:-1
so has part: feature:50684-51187:-1:exon
subclass of: SO_0000010

position:50684:-1
position: 50684
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:51187:-1
position: 51187
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:50684-51187:-1:exon

TRD_RS00220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00220
old locus tag: trd_0047
EC number: 2.3.1.-
inference: COORDINATES: protein motif:HMM:NF012792.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: N-acetyltransferase
translation: MAGQTVRLVTIERIAGQELWVQPASFRDLPQLAQLQRACFELRQAYSLWALVVLWLWPGVRVLVARIADEIVGCVVGDQRGRHARVLNLCVAPAWRRRGIGALLLAALEQELAADLYTLMVEDKNGPAQALYRRFGYVPIAEVRHYYGRNRHGVLMQKRRGERPHWQ
SIO_010081: TRD_RS00220
subclass of: SO_0000673
so part of: TRD_RS00220
location: complement(50684..51187)
location: region:50684-51187:-1
so has part: feature:50684-51187:-1:exon

WP_012641461.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:50684-51187:-1:exon

TRD_RS13390
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS13390
old locus tag: trd_0048
so part of: sequence
location: complement(51341..57166)
location: region:51341-57166:-1
so has part: feature:51341-57166:-1:exon
subclass of: SO_0000010

position:51341:-1
position: 51341
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:57166:-1
position: 57166
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:51341-57166:-1:exon

TRD_RS13390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS13390
old locus tag: trd_0048
inference: COORDINATES: protein motif:HMM:TIGR00254.1
GO function: GO:0005515 - protein binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PAS domain-containing protein
translation: MEALLTKTMLLLRLDANGRVLEASPSDLVPVGTLLSDAVLPGDRAAVEAMLQAARRGEPAWGAVTLQRDSTLQRCDAACIPGEFGTSSWLLRLRADDALPSFEDEEELERWLGRFLIHEIEIGLLVFDHTALLRYRNAPAVRLLASRESELPLGTPWSVVVERLLDYFPSARAVIDALHASVAEGRALHQLELERRDGAVLSLDYLPVHVGQATVAHVLRMRDITVRRRAERRAALAEQRYRDLVELVPVVVYRATAADTVETSYVSPQIERLLGYTPEEWLAERGMWRRHLHPEDRPWITAAIERAVREGKEFSLEYRMVRRDGSIVWVQDWGRVRTDESGCTFIHGVMLDITERKEAERARAEVEARLRALVETMPAVLYVREPEPIRLPDGLLSYPFRYLNDEVAELTGYPASQFLADPTLFARLIHPDDWGRYEAEMLRTDETGQLCDVDYRIVRCDGSVRWIRERAVQLRDATGQPLAWQGLLIDVTAQKETERALRDAEERYRTLVEQLPGALLVVSAQPRWRADGTPAFDLIYVSPQIERLTGYPPAAWHEPGLWMRLVHPDDRPHVLSCLERCLRERAARTVEYRLVRADGRTVWIRHEATLLLDQDGEPLAWQSLLLDITAEKEAEAAQRESEERFRLLAEHHPGAVTIVEPEPVALSDGTLGWRTLFVSPRIVDLTGYTAEEWSELGVWMRNIHPEDRERVLAEAERWYRVGPQQPLEYRFRHKDGRWVWLRQEGALVRDQGGRPRYLLLVTIDVTEQRQLLEQLREAELRYRTLVEQLPSVVLIRPLVPDREAFQRGMLNIYVSPAIERLTGFRPEEWTTERFLAQLHPDDRERVLAAITTADRTGESLDLEYRLLHKDGSVVWVWSISHVVRAADGIPPYRQVLLTDITARKRAEEALRGAEERYRTLVEQLPGAVILRSPESRRLPDGSLTYEILYISPNIERLTEFTASEWQEPGRWSRQIHPADRERVLAAQAESERTGSPLDIEYRFIRKDGRTIWLWHITRILRDANGTPRLRQVLLLDVTRRKESELALQEAEARYRSLVEQLPGAVLIRSASSELREDGSRQFDIHYVSPGIERLTGFTSQEWLVPGTWTRQIHPDDRDRVFAAVLASEAAAEPLELEYRLYRKDGTLIWIWHQTKVIHDQDGKPLYRQVLLTDITARKQAEEALRAAEAHYRTLVEQLPAVVIRVTARAQRLPDGLPGYETTYVSPQIEAVTGYTPEEWKELGIWARRLHPEDRERVLDAFWQHEATGEPLQLEYRFLHKDGRTVWLWHELRPIRAPDGTIQARQAVLMDITERKRAEQALREAEERYRTLVEQLPAVVYLEGAQPVRYPDGRLARPLLYVSPQVEQLTGYRPEEHQQDRTLWVQAIHPEDYPRVRQETREAWATGRFRSEFRILRRDGEVRWIESTARLVRDDQGKPLYWQGVMLDVTERKQAEEALREAEERYRTLVEQIPAAVLVTSAEPVVLPDGSLHYPVTFLSQRIEEVTGFSREEFLATPGLWFSRMHPDDQPRVFAEAVRTDETGEPFEATYRFQRKDGRWVWLENRAVMVRNAEGKPLFWHGLLIDVTERKRAEALLFAQTTLLRLIAEAAPLSEILELLCRLVEQQAPGLRCSVLLLGSDDRLYHGAAPSLPPRYLAAIDGLPIGPQAGSCGTAAYLDRPIFVEDIASDPRWADYREAALEAGLRACWSTPIRGTSGNVLGTVALYASEPRGPQPNEERLLELATQLAALALERWQESEELRHRAFHDPLTGLPNRLLFLDRLEHAVARADRDGGGIAVLFLDLDDFKRVNDTWGHAVGDVVLQEAAARLSRQVRAGDTVARFAGDEFTVLLDGVTGEHDVRVVTERLLAALASPIRCGEQEIRMGLSIGAAVATGRPMPDSGALLLSADQALYAAKRRGKGCYEIVIAQPGSSQAERRSS
SIO_010081: TRD_RS13390
subclass of: SO_0000673
so part of: TRD_RS13390
location: complement(51341..57166)
location: region:51341-57166:-1
so has part: feature:51341-57166:-1:exon

WP_012641462.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:51341-57166:-1:exon

TRD_RS15025
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS15025
old locus tag: trd_0049
so part of: sequence
location: 57525..58982
location: region:57525-58982:1
so has part: feature:57525-58982:1:exon
subclass of: SO_0000010

position:57525:1
position: 57525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:58982:1
position: 58982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:57525-58982:1:exon

TRD_RS15025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS15025
old locus tag: trd_0049
inference: COORDINATES: protein motif:HMM:NF013871.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HD domain-containing protein
translation: MSEPSTMPVETRPDRSLLERLPPALHDINDRLARSFAAAGHELYLVGGVVRDLLLGRPVTDLDYATSAHPEETRCLGEEAGAESIYTVGEAFGTIGLVFAGVTVEITTYRTEWYPTLDRRPAVRFGDSLLEDLARRDFTVNAMAVHAVTGELIDPYGGQLDLERRLLRAVGDPFERFREDPLRILRAARFAAQLGFEVEAQTRLAMQELASELQRVSVERIALELNRLLVAPEPDRGLELMRQTRLLPVVLPELVPLAEDPGDRRHKDIWRHTLQVVRQSPPRLAVRWAALLHDAAKPMTRTIDEQGEVHFFGHELKGAELARKVLRRLRQEKALIERVAQLVELHLRPAAYDETWTDSAVRRLMVEAGDLLEDLLDLVAADVTSARAWRRREARARIERLRAHIRRLEEEAALAQIKSPLDGHELMAIFGLPPGRWIAEVKNYLRDLVIEGQLAPGDKETARVLAERWVAEHPEIIERGQQARR
SIO_010081: TRD_RS15025
subclass of: SO_0000673
so part of: TRD_RS15025
location: 57525..58982
location: region:57525-58982:1
so has part: feature:57525-58982:1:exon

WP_012641463.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:57525-58982:1:exon

TRD_RS13400
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS13400
pseudo: true
so part of: sequence
location: complement(<59276..60781)
location: region:59276-60781:-1
so has part: feature:59276-60781:-1:exon
subclass of: SO_0000010

position:59276:-1
position: 59276
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:60781:-1
position: 60781
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59276-60781:-1:exon

TRD_RS13400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS13400
inference: COORDINATES: protein motif:HMM:NF012245.2
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: globin-coupled sensor protein
SIO_010081: TRD_RS13400
subclass of: SO_0000673
so part of: TRD_RS13400
location: complement(<59276..60781)
location: region:59276-60781:-1
so has part: feature:59276-60781:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:59276-60781:-1:exon

TRD_RS00240
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00240
old locus tag: trd_0052
so part of: sequence
location: 60953..62080
location: region:60953-62080:1
so has part: feature:60953-62080:1:exon
subclass of: SO_0000010

position:60953:1
position: 60953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:62080:1
position: 62080
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:60953-62080:1:exon

TRD_RS00240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00240
old locus tag: trd_0052
inference: COORDINATES: protein motif:HMM:NF024886.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MerR family transcriptional regulator
translation: MSDIPAVRSARRLLDGATVEGNFSLTRTIDEWLAGRPAATRRAYAHDVREFLAALGGELAQLDETALRRWLATFEHRRLARATVRRKLAAVRSFLRYLAERGYLERDLSSVVPAAFGKPPDQTPRVHATERGRLLATALQLADPRLQLLLWLAGCGCPLPVIARLRWRDLEQWNGQGIAFCHDERERAYRCVIPGLIWRGLQSLAETQAGDALVFAHPDGRPVSPQELAETIGWLLDEAAPELATDHRDDDRLLTLSEVAQRLGLPETTIRYYRDRFAPYLPTVGRGRSRRYSPQAVERLRWIIEQLHAGVSPVEIEAQLGGKTNAFASTEDEHRLIESVERLSQRIAELTVSLQLVAKALLQQEGWSPREPGTD
SIO_010081: TRD_RS00240
subclass of: SO_0000673
so part of: TRD_RS00240
location: 60953..62080
location: region:60953-62080:1
so has part: feature:60953-62080:1:exon

WP_041435800.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:60953-62080:1:exon

TRD_RS15030
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS15030
old locus tag: trd_0053
so part of: sequence
location: complement(62193..62411)
location: region:62193-62411:-1
so has part: feature:62193-62411:-1:exon
subclass of: SO_0000010

position:62193:-1
position: 62193
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:62411:-1
position: 62411
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:62193-62411:-1:exon

TRD_RS15030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS15030
old locus tag: trd_0053
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MALHWARFRDAIALFQRVATRQSSSAWAAEAIYWWGVAVYLATHSREQLDGVWEHLRVRFPDSIWAARTRHA
SIO_010081: TRD_RS15030
subclass of: SO_0000673
so part of: TRD_RS15030
location: complement(62193..62411)
location: region:62193-62411:-1
so has part: feature:62193-62411:-1:exon

WP_226980700.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:62193-62411:-1:exon

TRD_RS00255
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: mraZ
locus tag: TRD_RS00255
old locus tag: trd_0055
so part of: sequence
location: 63584..64012
location: region:63584-64012:1
so has part: feature:63584-64012:1:exon
subclass of: SO_0000010

position:63584:1
position: 63584
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:64012:1
position: 64012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:63584-64012:1:exon

TRD_RS00255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: mraZ
locus tag: TRD_RS00255
old locus tag: trd_0055
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012641469.1
GO function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]
GO process: GO:0051302 - regulation of cell division [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: division/cell wall cluster transcriptional repressor MraZ
translation: MFLGRFTHAIDDKGRLAIPARFREAFRGQGVLTRGIDRCLTLYPMDSWQPLAEKVSSLSISDPDARAFRRMVFAEATVVEFDRQGRILLPPELRAYAGLEREAIVVGVHSYVEIWSPENWAAQAELLAAEGPSIAQRLATLI
SIO_010081: TRD_RS00255
subclass of: SO_0000673
so part of: TRD_RS00255
location: 63584..64012
location: region:63584-64012:1
so has part: feature:63584-64012:1:exon

WP_012641469.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:63584-64012:1:exon

TRD_RS00260
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: rsmH
locus tag: TRD_RS00260
old locus tag: trd_0056
so part of: sequence
location: 64032..65012
location: region:64032-65012:1
so has part: feature:64032-65012:1:exon
subclass of: SO_0000010

position:64032:1
position: 64032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:65012:1
position: 65012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:64032-65012:1:exon

TRD_RS00260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: rsmH
locus tag: TRD_RS00260
old locus tag: trd_0056
EC number: 2.1.1.199
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012641470.1
GO function: GO:0016434 - rRNA (cytosine) methyltransferase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH
translation: MSERARLALEDPLSTTHEPVLLSAALTFLAPRDGGRYIDATFGGGGHSRAILEASAPSGQVLAIDADPAAVARARALAERYPGRLLPCHGNFRDLARLAQSYGFVPVDGILFDLGLSSDQLADPARGFSFQLAGPLDMRFDPTSGEPAAVIVNTWSAEELAELFWQYGEEPRAWAIAQTIVAERARQPIETTTQLAALVARVAGSRRERIHPATRVFQALRIAVNQELEALAAGLAQAVELLRPGGRLVVIAFHSLEDRLVKQFFRREAAACLCPPGTPVCICGHRPRLRLLTPRPVRPSAEEITRNPRSRSARLRAAERIAHDGR
SIO_010081: TRD_RS00260
subclass of: SO_0000673
so part of: TRD_RS00260
location: 64032..65012
location: region:64032-65012:1
so has part: feature:64032-65012:1:exon

WP_012641470.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:64032-65012:1:exon

TRD_RS00265
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00265
old locus tag: trd_0057
so part of: sequence
location: 65002..65460
location: region:65002-65460:1
so has part: feature:65002-65460:1:exon
subclass of: SO_0000010

position:65002:1
position: 65002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:65460:1
position: 65460
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:65002-65460:1:exon

TRD_RS00265
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00265
old locus tag: trd_0057
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVAEPVDRAAAPVRPTPVGRRVAPRRSRAWLGVLLVLVAAIGGLCLLYLEQTSRVVELGYELTRLQRNRDQVALEVAALRYELARRQSLARVEELARREYGMVPLRKAESLRLARPAPLPTPVPPPRSERSWWQRVQDALLGVGHAEAETTP
SIO_010081: TRD_RS00265
subclass of: SO_0000673
so part of: TRD_RS00265
location: 65002..65460
location: region:65002-65460:1
so has part: feature:65002-65460:1:exon

WP_012641471.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:65002-65460:1:exon

TRD_RS00270
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00270
old locus tag: trd_0058
so part of: sequence
location: 65457..67184
location: region:65457-67184:1
so has part: feature:65457-67184:1:exon
subclass of: SO_0000010

position:65457:1
position: 65457
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:67184:1
position: 67184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:65457-67184:1:exon

TRD_RS00270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00270
old locus tag: trd_0058
inference: COORDINATES: protein motif:HMM:NF013100.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: penicillin-binding protein 2
translation: MSDLATWRLRLIFAALVLLASGIGYRVVSFAVLQGPVLAQRAEAFRFREDVVPAHRGEILDARGRVLATDVPADRVSAIVREVEDPQRTAQLLAPLIGRPAEEILAALTQPGREWVVLQRQLDPAVSAQIRALDLPGIVLDPEPKRAYPMGDFASQVLGFVNWEYRGAYGLEAQYDAVVGGVPGQLVGERDLAGNVIALAPSSWNPPQDGATLVLTIDSAVQYLAESILERTIQDQRAAGGTIIVMDVRTGAILAMANRPSFDPNRFREVTDPSLFANPAIGAAYEPGSTFKVITLALGLDAGVIQPETVVDGGAYRELPDGTRIFNALHQVFGPETMTEVLIHSSNVGAMEVADRLGPERFAEGIQRFGFGQPTGVDLPGEIGGIVNLPGSPGWSLTTFYTTSFGQGIAVTPLQLVTAVAAIANGGVLMRPYVVQEIRRGDRVQVVQPQPVRRVISEETARTLTAMLAEVMDSYAGRFAVPGYRIAAKTGTAEIPGPQGYERGEGATIASVVGYGPVEDPRYCVLVKIDRPKGSPWGERAAGPAFAELFRQLLLLKGIPPSQPVTSTPSGGSQP
SIO_010081: TRD_RS00270
subclass of: SO_0000673
so part of: TRD_RS00270
location: 65457..67184
location: region:65457-67184:1
so has part: feature:65457-67184:1:exon

WP_012641472.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:65457-67184:1:exon

TRD_RS00275
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: murF
locus tag: TRD_RS00275
old locus tag: trd_0059
so part of: sequence
location: 67181..68581
location: region:67181-68581:1
so has part: feature:67181-68581:1:exon
subclass of: SO_0000010

position:67181:1
position: 67181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:68581:1
position: 68581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:67181-68581:1:exon

TRD_RS00275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: murF
locus tag: TRD_RS00275
old locus tag: trd_0059
inference: COORDINATES: protein motif:HMM:TIGR01143.1
GO function: GO:0047480 - UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity [Evidence IEA]
GO process: GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
translation: MISLRDVLDGTAGMLRGSAAPDLLFRRVWHDSRTVEPGDLFVALRGERHDGHDFVADAVRRGAAGALVEARWAEELANLGIPLIVVDDTLAALLRLASYWRRLFAVPVAAVTGSVGKTSTKEAIASVLAQRFQVVRSRASFNTDVGIALDLLTIDPNTDVVVLEFGEAYRLGEVRELCALAEPRIGVVTNVSYAHLARMGTIERIAQSIAELPESLPADGVAVLNGDDFRVRLMAERTPARVLLYGLSPDCHVRAEEIESRGLDGISFDLVAFGERNRVRLPLLGQHSVHHALAAIAVGYELGLTLEEMLPGFHDPRVQVRLLTVPGINGATLLDDTYNASPASCMAALSLLAEIPAQRRIAVFGDMYELGWYEEEGHRMVGRRAAAVVDRLFTLGPRARWIAEAAIEAGLAPERVWATDDRRELVAVLRETLRPGDFVLIKGARGMRMEEIVEALRAAQETEQGR
SIO_010081: TRD_RS00275
subclass of: SO_0000673
so part of: TRD_RS00275
location: 67181..68581
location: region:67181-68581:1
so has part: feature:67181-68581:1:exon

WP_012641473.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:67181-68581:1:exon

TRD_RS00280
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: mraY
locus tag: TRD_RS00280
old locus tag: trd_0060
so part of: sequence
location: 68581..69597
location: region:68581-69597:1
so has part: feature:68581-69597:1:exon
subclass of: SO_0000010

position:69597:1
position: 69597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:68581-69597:1:exon

TRD_RS00280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: mraY
locus tag: TRD_RS00280
old locus tag: trd_0060
EC number: 2.7.8.13
inference: COORDINATES: protein motif:HMM:TIGR00445.1
GO function: GO:0008963 - phospho-N-acetylmuramoyl-pentapeptide-transferase activity [Evidence IEA]
GO process: GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phospho-N-acetylmuramoyl-pentapeptide- transferase
translation: MDLFEVLRTRSVLPRDPGENLALSLALSGVAFVITVGIGKPYIAWLRRHKIGKQIRLEGPEGHLTKLGTPTMGGFMITVPVILLTLLFNLAGRLSMLLPLGVLIGTAVLGAIDDRLSLVTTGRGGMTARFKMAWLLLFSLAAALVLHFPLGLRSIYIPFLGKFEIGLWYLPIAVLAIAGTANAVNLTDGLDTLAGGTAAVAFTAYGIIAFLQGQIQVVTFCFTMVGAILGFLWYNAHPAQVFMGDTGSLALGAALATAAFMTGQWLLLPVIGIVFVAEALSVILQVAYYKLTKGKRLLRMAPLHHHFELIGWSETQITMRFWLISMMAGLLGIALALV
SIO_010081: TRD_RS00280
subclass of: SO_0000673
so part of: TRD_RS00280
location: 68581..69597
location: region:68581-69597:1
so has part: feature:68581-69597:1:exon

WP_052294019.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:68581-69597:1:exon

TRD_RS00285
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: murD
locus tag: TRD_RS00285
old locus tag: trd_0061
so part of: sequence
location: 69613..71022
location: region:69613-71022:1
so has part: feature:69613-71022:1:exon
subclass of: SO_0000010

position:69613:1
position: 69613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:71022:1
position: 71022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:69613-71022:1:exon

TRD_RS00285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: murD
locus tag: TRD_RS00285
old locus tag: trd_0061
EC number: 6.3.2.9
inference: COORDINATES: protein motif:HMM:TIGR01087.1
GO function: GO:0008764 - UDP-N-acetylmuramoylalanine-D-glutamate ligase activity [Evidence IEA]
GO process: GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
translation: MGDRAPLDLRGKAVLVMGLGTRSGGLGVTRWLVEQGAEVTVTDLRTAEQLAPSLRALAGLPVRLVLGEHRREDFERAEIVVRNPAVPRESPWLALARAAGARIEMEMTLFFRACPAPIVGVTGTKGKTTTATLCAAILRQWRPDTVLAGNLGRSALETLPGIQPDTPVVLELSSWQLEGLDEHGLSPHIAVLTSISPDHLDRYPSFEAYIDAKRAIARHQRPGDWFVVNRDDPVAWACRDAGCGKVVPFGRDDGVSDGAFWRDDRLIWRWGGEEQDLLRRSDFPLMGEHAVGNALAAAAAALLRGASPAHVAAALREAEPVPHRLEHVARLGTVDFVNDSAATAPAAVLAALATFRERPIVLIGGGAAKGVSLAELAEAVARQVRAVVLLDGTATPDYQAALRAAGARVEGPYQSMEEAVRRAAELAEPGAVVLLSPGCASFGLFRDEFHRGESFREAVRQLVRERGGD
SIO_010081: TRD_RS00285
subclass of: SO_0000673
so part of: TRD_RS00285
location: 69613..71022
location: region:69613-71022:1
so has part: feature:69613-71022:1:exon

WP_012641475.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:69613-71022:1:exon

TRD_RS00290
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: ftsW
locus tag: TRD_RS00290
old locus tag: trd_0062
so part of: sequence
location: 71022..72296
location: region:71022-72296:1
so has part: feature:71022-72296:1:exon
subclass of: SO_0000010

position:72296:1
position: 72296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:71022-72296:1:exon

TRD_RS00290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: ftsW
locus tag: TRD_RS00290
old locus tag: trd_0062
inference: COORDINATES: protein motif:HMM:TIGR02614.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0003674 - molecular_function [Evidence IEA]
GO process: GO:0051301 - cell division [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: putative lipid II flippase FtsW
translation: MRWCLRRVMDALAVPGERRLAHEPDLVLLLTLLGLVTFGMVMVFSASVGSDPGYAVRHAIWLALGALAALATAALDYRIWRRLAVLALLGALGLMTLVLLPGFGDTRLGAQRWIELGPLSFQPSEMAKLALVLYLASWLASKGERIRRFDLGVLPFMLLLGLLGGLTMLQPDLGTAIVLGFTGLAMFFAAGATLRHTVLLGGIALVAGTVLAFGAPYRRDRILILFSSDQELFDPNGLLRTLGWQIAQARLAFGSGGWFGVGLGMGRQKFQWLPHAHNDAIFAVIGEELGVVGCLVLLLLFLILAWRGLSIARRAPDRFGGLLAVGITSWLVSQALINAGGISSVLPFTGIPLPFVSYGGSSLITSLAAAGILVNISRVTLPRPAPTSAAPRERPRHAPPAVSLSRFGRRGRRRVAPRAGGRHP
SIO_010081: TRD_RS00290
subclass of: SO_0000673
so part of: TRD_RS00290
location: 71022..72296
location: region:71022-72296:1
so has part: feature:71022-72296:1:exon

WP_012641476.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:71022-72296:1:exon

TRD_RS00295
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: murC
locus tag: TRD_RS00295
old locus tag: trd_0063
so part of: sequence
location: 72293..73681
location: region:72293-73681:1
so has part: feature:72293-73681:1:exon
subclass of: SO_0000010

position:72293:1
position: 72293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:73681:1
position: 73681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:72293-73681:1:exon

TRD_RS00295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: murC
locus tag: TRD_RS00295
old locus tag: trd_0063
EC number: 6.3.2.8
inference: COORDINATES: protein motif:HMM:TIGR01082.1
GO function: GO:0008763 - UDP-N-acetylmuramate-L-alanine ligase activity [Evidence IEA]
GO process: GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: UDP-N-acetylmuramate--L-alanine ligase
translation: MRWPAHLNHLQPGLPIHFLGIGGAGMSGLAELLADRGYRVTGCDVAWSPVLDRLVARDIAVAVGHDERHAQDAHLLVVTSAVRAQHPEVAAFAAQRIPIVKRAALLGWLAASYRTIAVAGTHGKSTTCGMIALALDAAGLTPGFAIGAEVRDLGGTSARLPGGNLFVVEADEYDYSFLFLEPDIAVVLNVDHDHPDLFPDRASVARAFRRFLARLRPVGTAVVWADDPVACAVADELQSRGHRVVTFGETAEAAYRVLPDGALRDPSGAIWPLALAVPGRHNRLNAAAAVAAVVQVGVPLVVAVRALEHFNGVGRRFEEVGIVNGVRVILDYAHHPREIAATIAAARERFPAARLWAVFQPHTYSRTARFLTEFAHALEQADLAVVAEIYAAREQPLAGIDAAALASAIRRIPAIAVPDPMAAAETVGAAMRAGDVVLVLGAGDIWKAAVRLREGHGDADTG
SIO_010081: TRD_RS00295
subclass of: SO_0000673
so part of: TRD_RS00295
location: 72293..73681
location: region:72293-73681:1
so has part: feature:72293-73681:1:exon

WP_012641477.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:72293-73681:1:exon

TRD_RS00300
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: murB
locus tag: TRD_RS00300
old locus tag: trd_0064
so part of: sequence
location: 73665..74618
location: region:73665-74618:1
so has part: feature:73665-74618:1:exon
subclass of: SO_0000010

position:73665:1
position: 73665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:74618:1
position: 74618
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:73665-74618:1:exon

TRD_RS00300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: murB
locus tag: TRD_RS00300
old locus tag: trd_0064
EC number: 1.3.1.98
inference: COORDINATES: protein motif:HMM:NF010480.0
GO function: GO:0071949 - FAD binding [Evidence IEA]; GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: UDP-N-acetylmuramate dehydrogenase
translation: MPTRAERSRVVTVDGRSLRVLVSEPLARYTTFRIGGPADFLVRASDRATLESALIWAEREGLPVTVIGGGSNLLVRDGGIRGLVIVFRAPGESVGELATAAQDDGSVLVTLPATAPLSWVGHWASEHGLAGMEWAAGLPGVVGGAVVNNAGAHGGEIGHVIVDLELYDLPSRRLVRWTREQLAPRYRMTALKALSQPRSLVVLGARLRLLRDDPARLLAFAEEHARWRRMHQPTGPCAGSVFTNPPGTYAGYLIEQAGLKGFRIGQMAVSERHANFFVNLGGATAREALALIEAVQERVAERFGIVLQPEIEIIGES
SIO_010081: TRD_RS00300
subclass of: SO_0000673
so part of: TRD_RS00300
location: 73665..74618
location: region:73665-74618:1
so has part: feature:73665-74618:1:exon

WP_143714579.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:73665-74618:1:exon

TRD_RS00305
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00305
old locus tag: trd_0065
so part of: sequence
location: 74622..75740
location: region:74622-75740:1
so has part: feature:74622-75740:1:exon
subclass of: SO_0000010

position:74622:1
position: 74622
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:75740:1
position: 75740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:74622-75740:1:exon

TRD_RS00305
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00305
old locus tag: trd_0065
EC number: 6.3.2.4
inference: COORDINATES: protein motif:HMM:NF002526.0
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0008716 - D-alanine-D-alanine ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: D-alanine--D-alanine ligase
translation: MARKIRVAVIFGGQSGEHDVSLRSARAILRHIDRERFEIVPVGITREGRWLIGGDPLRELATASRLPLELEPVSSGAGSAPATGESALALPGSLPGEIDVVFPVLHGPYGEDGTIQGLLELAGIPYVGCGVLASAVAMDKPTAKRLFASVGLEQARWIAFTWHEWQCQHQTLLARIERELGYPCFVKPANLGSSVGVSKARRREELLAAIELASRYDRRIVVEEAIDARELEVSVLGNEEPVASIVGEIVPSREFYDYEAKYIDPHSQLLIPAPISEEQAATVRRMALEAFRVIDGAGMARVDFFLERSTGRILINEVNTIPGFTAISMYPKLWEASGLCFRDLITRLIELALERHQAQQRRRAQATQPFSG
SIO_010081: TRD_RS00305
subclass of: SO_0000673
so part of: TRD_RS00305
location: 74622..75740
location: region:74622-75740:1
so has part: feature:74622-75740:1:exon

WP_012641479.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:74622-75740:1:exon

TRD_RS00310
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00310
old locus tag: trd_0066
so part of: sequence
location: 75737..76456
location: region:75737-76456:1
so has part: feature:75737-76456:1:exon
subclass of: SO_0000010

position:75737:1
position: 75737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:76456:1
position: 76456
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:75737-76456:1:exon

TRD_RS00310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00310
old locus tag: trd_0066
inference: COORDINATES: protein motif:HMM:NF015739.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: FtsQ-type POTRA domain-containing protein
translation: MSRRRRARRAVVRGVVTGQFLAALLVVAGAVLLVGFLGGPQYQVRTVVVRGNQLAFAEEVARESGVLGRSVFLIDTQDVARRIVSHPAIAQATVRAFYPDTVVIDVVERVPASVWANESGTWLVDGEGRVIGAGDLPGLPHVQVASSLSLVPGQRVPPSVADALAEVTRRYAGRLGGLAYRPGDGLVLVFVGGERILLGDAERLAEQLAVLDALLAEGRGFLHLDLRDPDRPVLWQIAP
SIO_010081: TRD_RS00310
subclass of: SO_0000673
so part of: TRD_RS00310
location: 75737..76456
location: region:75737-76456:1
so has part: feature:75737-76456:1:exon

WP_012641480.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:75737-76456:1:exon

TRD_RS00315
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: ftsZ
locus tag: TRD_RS00315
old locus tag: trd_0068
so part of: sequence
location: 76614..77729
location: region:76614-77729:1
so has part: feature:76614-77729:1:exon
subclass of: SO_0000010

position:76614:1
position: 76614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:77729:1
position: 77729
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:76614-77729:1:exon

TRD_RS00315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: ftsZ
locus tag: TRD_RS00315
old locus tag: trd_0068
inference: COORDINATES: protein motif:HMM:TIGR00065.1
GO function: GO:0003924 - GTPase activity [Evidence IEA]
GO process: GO:0000910 - cytokinesis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cell division protein FtsZ
translation: MAMFENHHEDLEYSFARIKVIGVGGGGGNAINRMIEAGVQGVEFIAVNTDSQALLKSLAPVTVRIGDKLTKGLGAGGRPEIGERAAEESAEILAELVRGADMIFIAAGMGGGTGTGASPVIARLAREAGALTVAVVTRPFDFEGAKRRRIADEGIAVLKEHVDALIVIPNQRLVSMVDPKTPLTETFRIADDVLRQGIQGITDLITRPGLINLDFADVKSILRDAGTALIAIGRGSGENRCVDAARAAVESPLLEMSIEGATRVLYNIAGGPDLTMAEVSEAAELIRTMVDDEAEIIFGTTEPDDAMGRDVTITLIAAGFTGTGTARRPRTPERRFRPEPVRPAGSGAPRTPILPDDEWAEPSILRFLRER
SIO_010081: TRD_RS00315
subclass of: SO_0000673
so part of: TRD_RS00315
location: 76614..77729
location: region:76614-77729:1
so has part: feature:76614-77729:1:exon

WP_012641482.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:76614-77729:1:exon

TRD_RS00320
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: nrdR
locus tag: TRD_RS00320
old locus tag: trd_0069
so part of: sequence
location: 77748..78233
location: region:77748-78233:1
so has part: feature:77748-78233:1:exon
subclass of: SO_0000010

position:77748:1
position: 77748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:78233:1
position: 78233
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:77748-78233:1:exon

TRD_RS00320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: nrdR
locus tag: TRD_RS00320
old locus tag: trd_0069
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012641483.1
GO function: GO:0140110 - transcription regulator activity [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transcriptional regulator NrdR
translation: MKCPYCGARDARVIDSRELNGGESIRRRRECIACGRRFTTYERVEPIWLMVVKRDGRREPFDVGKLREGLRLALKKRPVSPDEIDRIVATVERELQSLGTSEVPSTLIGEIVLRELKQLDDVAYIRFASVYRRFADLEDLRREMEALGWRPRAAVTVDETS
SIO_010081: TRD_RS00320
subclass of: SO_0000673
so part of: TRD_RS00320
location: 77748..78233
location: region:77748-78233:1
so has part: feature:77748-78233:1:exon

WP_012641483.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:77748-78233:1:exon

TRD_RS00325
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00325
old locus tag: trd_0070
so part of: sequence
location: 78191..79363
location: region:78191-79363:1
so has part: feature:78191-79363:1:exon
subclass of: SO_0000010

position:78191:1
position: 78191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:79363:1
position: 79363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:78191-79363:1:exon

TRD_RS00325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00325
old locus tag: trd_0070
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MASSSRGDGGRDQLSLTLLSPSGEPLATLRYTNDGSDRFRWIPDRFRLLVTSEGDAETEFSSLELDLPRHWRSLPIQEGEQRGWLVFPEGPPSFPVELRVVEHTGKTQRALAAFALPVRFCGRNRFDPQRDRLPWANRIDEFGPAEPSWDTFRRTFRLTIAPRAFFRGLYREVVQLQCDADGGVRGGLCTGLARAALARALGRLPAVHDLRETVLVLHGRQLSDRALLAGLPWFLWPSPRRAYRAFVGDLLEQGWSERCFDLNVPRPWRRDLLQALLGQGHTVVPYAFCQEHADEAFVWVADPNYPDATSTVVTIDLARDRYAYPPLAVDGRRTTIVAVPLSAYLEGSTAILASLAGPLVTAPQRAVRTAGLALLVFLAGLAVVLLRRKR
SIO_010081: TRD_RS00325
subclass of: SO_0000673
so part of: TRD_RS00325
location: 78191..79363
location: region:78191-79363:1
so has part: feature:78191-79363:1:exon

WP_012641484.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:78191-79363:1:exon

TRD_RS00330
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: trxA
locus tag: TRD_RS00330
old locus tag: trd_0071
so part of: sequence
location: complement(79413..79736)
location: region:79413-79736:-1
so has part: feature:79413-79736:-1:exon
subclass of: SO_0000010

position:79413:-1
position: 79413
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:79736:-1
position: 79736
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:79413-79736:-1:exon

TRD_RS00330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: trxA
locus tag: TRD_RS00330
old locus tag: trd_0071
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020808024.1
GO component: GO:0005737 - cytoplasm [Evidence IEA]
GO function: GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: thioredoxin
translation: MAKPVTVSDETFEREVVQSPVPVLVDFWAPWCGPCRMIAPILEEIAEEKAGKLKVAKINVDENMQVAMQHGISSIPTLILYKGGKPVERIIGAMPKQRLLQQIEKHL
SIO_010081: TRD_RS00330
subclass of: SO_0000673
so part of: TRD_RS00330
location: complement(79413..79736)
location: region:79413-79736:-1
so has part: feature:79413-79736:-1:exon

WP_012641485.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:79413-79736:-1:exon

TRD_RS00335
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00335
old locus tag: trd_0072
so part of: sequence
location: 80067..81029
location: region:80067-81029:1
so has part: feature:80067-81029:1:exon
subclass of: SO_0000010

position:80067:1
position: 80067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:81029:1
position: 81029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:80067-81029:1:exon

TRD_RS00335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00335
old locus tag: trd_0072
inference: COORDINATES: protein motif:HMM:NF012515.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PfkB family carbohydrate kinase
translation: MFDVVTCGELLVDFVALRRGVRLADAPAFRRAAGGAPANVAVGVARLGRRAAFLGQVGDDDFGHFLAETLHRAGVDTRGLRFSSAARTALAFVSLRADGERDFLFYRHPSADMLWRPQDVERSVAGATRIVHFGSVSLIDEPARSATLEAVALARASGALVSYDPNLRLTLWPSPTVAREGMLRGLAEADIVKLSSEELAFLTGSSDPASARQLWHDRLRLLVVTLGAAGCAYLTRYGEGRVPGFPVRVVDTTGAGDGFVAGLLVGLLEHGGEWSQEIIEQALRLANAVGALVCTRRGAIPALPTRQRVKQFLRAAAETF
SIO_010081: TRD_RS00335
subclass of: SO_0000673
so part of: TRD_RS00335
location: 80067..81029
location: region:80067-81029:1
so has part: feature:80067-81029:1:exon

WP_012641486.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:80067-81029:1:exon

TRD_RS00340
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00340
old locus tag: trd_0073
so part of: sequence
location: 81053..82456
location: region:81053-82456:1
so has part: feature:81053-82456:1:exon
subclass of: SO_0000010

position:81053:1
position: 81053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:82456:1
position: 82456
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:81053-82456:1:exon

TRD_RS00340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00340
old locus tag: trd_0073
inference: COORDINATES: protein motif:HMM:NF016289.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: M28 family peptidase
translation: MTRDLREFDRIVLGEIWTSDEAWRNLVFLCDDLGHRFAGTDRERRAAEFLAERMRAYGLQNVRLEEFPMATWERGPCHLWVTAPLERELPAIAMPYCPSARLEAEVIDVGEGELPDFERWASEIPGKIVLTDAETNRPGERKSHRTDKFNWAIQRGAVAVLFINQNPGQLHITGSLTGRTPNGTRAVDREALIPGLGLSYETGMLLRRLAERGALRLRIATENRTYDSRSANVIGEIPGRERPDEIVLVGGHYDGHDIAQGAGDDAAGTVVGLEVGRALAPLAGQLRRTVRIICFGAEELGLLGAYHHAAQGAARGERFRFVLNLDGAGRGTGGQEQLVLSGLPELVPYFQSLARQLPYDFTIRDELNAHSDHFPFALHGIPNATLSSRDATAGMLGRGWGHTEADTLDKVTLRSIQLAAALAARLVIRLSEDEAFPGRLRTPEEVRQQLADAGLLERVRATEGNVI
SIO_010081: TRD_RS00340
subclass of: SO_0000673
so part of: TRD_RS00340
location: 81053..82456
location: region:81053-82456:1
so has part: feature:81053-82456:1:exon

WP_012641487.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:81053-82456:1:exon

TRD_RS00345
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00345
old locus tag: trd_0074
so part of: sequence
location: complement(82533..84128)
location: region:82533-84128:-1
so has part: feature:82533-84128:-1:exon
subclass of: SO_0000010

position:82533:-1
position: 82533
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:84128:-1
position: 84128
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:82533-84128:-1:exon

TRD_RS00345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00345
old locus tag: trd_0074
EC number: 3.5.-.-
inference: COORDINATES: protein motif:HMM:NF019581.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: amidohydrolase
translation: MQAYLVTNGTILTMDPSQPQVEAFGVIGEWIVSAGSLAEVEAALPRGAGRLDLAGATCLPGFNEAHNHMLNFGFVLGQVNCRYPAVRSIEEIVARFAERAEGTPPGSWIRGRGYDDNKLTEHRHPTRWDLDRASTAHPLVLVHSSGHMLVANSLALQLAGVSRETPDPPGGHIVRDEHGDPTGLLQENAMELIERVIPAPTLEDMVEALRRCNDAYVAAGITSSQDAGLDDPQQVEAFQRAVQRGLLRLRTSIMLRHQLLPHLLGLGIKQGFGNHHLRIGPVKLFADGSLIGRTAAVSRPFLADPRSDNCGITIWSQEELDELVWQAHAAGFQVATHAIGDRAIEMVLDAYERALARLPRPDHRHRIEHGGVLRPDLIERIARLGVLVVSQPIFIAEYGDGFIRHLGLERIQLTYPFRSLLDAGIRLVFSTDCPVSAYQPLRCIQAAVQERTASGRSYALEEAITVEEALPLYTVNGAYASFEEHCKGMLRPGMLADFVVLERDPRRVDPEELAEIRVLRTVIGGETVYEA
SIO_010081: TRD_RS00345
subclass of: SO_0000673
so part of: TRD_RS00345
location: complement(82533..84128)
location: region:82533-84128:-1
so has part: feature:82533-84128:-1:exon

WP_012641488.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:82533-84128:-1:exon

TRD_RS00350
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00350
old locus tag: trd_0075
so part of: sequence
location: 84484..84822
location: region:84484-84822:1
so has part: feature:84484-84822:1:exon
subclass of: SO_0000010

position:84484:1
position: 84484
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:84822:1
position: 84822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:84484-84822:1:exon

TRD_RS00350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00350
old locus tag: trd_0075
inference: COORDINATES: protein motif:HMM:NF033788.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: metalloregulator ArsR/SmtB family transcription factor
translation: MEHHCCPIDDRSRVGHALPTRQLAQLARALADETRLEILTLLVEQNQPICVCHLVERVPVGQPTVSHHLRLLRQAGLVTVERRGTWAYYQATPLARLLLERLSEAIHWPVMA
SIO_010081: TRD_RS00350
subclass of: SO_0000673
so part of: TRD_RS00350
location: 84484..84822
location: region:84484-84822:1
so has part: feature:84484-84822:1:exon

WP_012641489.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:84484-84822:1:exon

TRD_RS00360
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00360
old locus tag: trd_0077
so part of: sequence
location: 85283..86776
location: region:85283-86776:1
so has part: feature:85283-86776:1:exon
subclass of: SO_0000010

position:85283:1
position: 85283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:86776:1
position: 86776
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:85283-86776:1:exon

TRD_RS00360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00360
old locus tag: trd_0077
inference: COORDINATES: protein motif:HMM:NF013434.2
GO function: GO:0016491 - oxidoreductase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: FAD-dependent oxidoreductase
translation: MVVRETLPVVVVGAGPIGLVAAAHLAQRGLPFLVLEAGPDIATSVRRWSHVRMFSPWHFDLDPVAVSLLTSEGWSSPDPESYPTGGEFIARFLEPLARHPLIRPALRFSHRVTAIGRLGRDKLSGHDRAGRPFAVRVMTPTGEQELLARAVLDASGAIPNPLGGSGWPAIGERACTDSIDYGMPDVLGRDRARYAGARTLVVGAGHSAFGTLLDLVSLAEQEPGTVVHWAIRRRSLAGRLGSPQDELPERGRLGQRLAAALEADRIVLHRGILVDRLERTSQGIVVFAGERALPPVDRIVCATGYRPDLGLLRELRLALDTVVEAPVALAPAIDPALHSCGTVPPHGVEELTHPQEPDFFVVGLKSYGRAPTFLLRTGYEQVRSIVAALAGDWEAARRVELRLPATGVCGGEKGEACCSEPGVTEKETDQPTAVAKRPLLLVGGPERARLRPALEISGPACPWPRPSKAEQGVCCADRADEPVCTCESESAGQTCGG
SIO_010081: TRD_RS00360
subclass of: SO_0000673
so part of: TRD_RS00360
location: 85283..86776
location: region:85283-86776:1
so has part: feature:85283-86776:1:exon

WP_012641491.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:85283-86776:1:exon

TRD_RS00365
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00365
old locus tag: trd_0078
so part of: sequence
location: complement(86783..87646)
location: region:86783-87646:-1
so has part: feature:86783-87646:-1:exon
subclass of: SO_0000010

position:86783:-1
position: 86783
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:87646:-1
position: 87646
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:86783-87646:-1:exon

TRD_RS00365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00365
old locus tag: trd_0078
inference: COORDINATES: protein motif:HMM:NF021214.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cytochrome c oxidase assembly protein
translation: MLLPLLHTCPTCPSVLGITLYPPSLLLIAVPTIVYTLALRRLAQRGRPVPTSWVIAFYAGMLSALIALAGPLDTWNDELLTMHMAQHLVLIQVTAPLLLLGRPVQVILRALPPQRAGLVTRLLLRPIWSRRVLEFLTRPLVATGLSILALVVWHFPALYEEAVLRQSVHDLQHVSFFGTALLFWWPIIDPVPRHHRVSGLWASLMVFITAVASTVIGAILTLADEVLYEPYRYAAMPWGFTPLVDQQVAGLLMWIGGGTLYLVIILVLLARWLLREEGRRMASEPAG
SIO_010081: TRD_RS00365
subclass of: SO_0000673
so part of: TRD_RS00365
location: complement(86783..87646)
location: region:86783-87646:-1
so has part: feature:86783-87646:-1:exon

WP_012641492.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:86783-87646:-1:exon

TRD_RS00370
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00370
old locus tag: trd_0080
so part of: sequence
location: 87796..89814
location: region:87796-89814:1
so has part: feature:87796-89814:1:exon
subclass of: SO_0000010

position:87796:1
position: 87796
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:89814:1
position: 89814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:87796-89814:1:exon

TRD_RS00370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00370
old locus tag: trd_0080
inference: COORDINATES: protein motif:HMM:NF024910.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: APC family permease
translation: MEAGETSSSSRKSTSIPGTHPGDRFIRHVASSDLPIREVEPGRFIAELVEPASVWGKTWVRLRRALIGRPLRTAEAAHERIGKAKALAVFSSDALSSTAYATEEILRVLVLAGTAAYAFVQPIGLAIVLLLAIVVFSYRQTIRAYPHGGGTYIVTKDNLGIAPGLLAAGALLSDYVLTVAVSISAGVAAMTSAFPSLYPYRVELAVAAIVLLTVANLRGVRESATIFMLPTYAFIVSIGALILLGLASLAGLGPQPHPIHREVSPPSSPLTLFLILRAFASGSTALTGVEAIADGVPAFKEPQADNARTTLLAMGLILAFLFSGITFLSYHFRLAPNERETIVSQLARTLVDGSPFYYVVQAVTASILFLAANTAFADFPRLGYFLARDRFLPRQFRFQGDRLAFSTGILTLGALTILLVIARHASVAALIPLYAVGVFTAFTLSQTSMVVHWWRSAQGELRRVPWHSLVINAIGAVVTGIVTVVVIVTKFTHGAWIVILLIPALIGMMLAIHRHYVSVAEQLRISSEEARHWLRLLPRRSVAIVPIASLNRASLTALAYARVIADDVTAVHVATEPETGQTLQQRWREAGLTIPLVIVDSPYRELLGPLVAVIEKLHREKGGPLITVVIPEFVPVHWWERLLHTQTAWRLRRALAQIPDLAITMVPYHLRD
SIO_010081: TRD_RS00370
subclass of: SO_0000673
so part of: TRD_RS00370
location: 87796..89814
location: region:87796-89814:1
so has part: feature:87796-89814:1:exon

WP_012641493.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:87796-89814:1:exon

TRD_RS00375
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00375
old locus tag: trd_0079
so part of: sequence
location: complement(89783..90688)
location: region:89783-90688:-1
so has part: feature:89783-90688:-1:exon
subclass of: SO_0000010

position:89783:-1
position: 89783
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:90688:-1
position: 90688
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:89783-90688:-1:exon

TRD_RS00375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00375
old locus tag: trd_0079
inference: COORDINATES: protein motif:HMM:NF012791.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: universal stress protein
translation: MPTLIVPLEYDRTKPQPHGVSERVLPWARALAGRLESSLVLVSVLDVPVGLRSLQEQELLRALLEDWRAECRRYLEEIAGTFPSGRPARIFVEEGDPALVLTRLAAEVPDPLLVMAAHARAGWRRLVLGSVTAQVIGSGVAPVFVVPAHLPPPVEEPVLDRVLVPLDGSRLAEAALTLLPVLGTKGWEVLLLHVRESRARRIEADVIGDDPEAYLRELADRLTAQGYRTQWLVAGGRPAQVIVETARARSVDLIAMVTHGWTGLRDVLMGSTAEQVLAHAPVPVLVRRPVPFSPGGGTGPS
SIO_010081: TRD_RS00375
subclass of: SO_0000673
so part of: TRD_RS00375
location: complement(89783..90688)
location: region:89783-90688:-1
so has part: feature:89783-90688:-1:exon

WP_012641494.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:89783-90688:-1:exon

TRD_RS00380
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00380
old locus tag: trd_0081
so part of: sequence
location: complement(90738..91694)
location: region:90738-91694:-1
so has part: feature:90738-91694:-1:exon
subclass of: SO_0000010

position:90738:-1
position: 90738
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:91694:-1
position: 91694
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:90738-91694:-1:exon

TRD_RS00380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00380
old locus tag: trd_0081
inference: COORDINATES: protein motif:HMM:TIGR03718.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TerC family protein
translation: MVDVPLWGWLAFLALILGLLTLDLGVFHRKAHVVEMKEAGLWVAFWVSLSLLFGVFLWWWDGHEAGLQYFTGYLIELSLSADNMFVFVLIFTAFAVPAQYQHRVLYYGILGALIMRGLMILGGAWLISQFHWILYIFGAFLVFTGIRMLLEKEEREVDVENNIAIRLVSRFAPIVPRYYEQRFFVRIDGKRYATPLIVVLVLVEITDLMFAIDSIPAIFAVTRDPFIVFSSNVFAILGLRSMYFLLAGLVRRLAYLRYGLAFILSYIGVKMLIQDFYKIPTALSLGIVIVTLAISVIVSLVLAERRTVRQPVEVPPRD
SIO_010081: TRD_RS00380
subclass of: SO_0000673
so part of: TRD_RS00380
location: complement(90738..91694)
location: region:90738-91694:-1
so has part: feature:90738-91694:-1:exon

WP_012641495.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:90738-91694:-1:exon

TRD_RS00390
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00390
old locus tag: trd_0082
so part of: sequence
location: complement(92197..93804)
location: region:92197-93804:-1
so has part: feature:92197-93804:-1:exon
subclass of: SO_0000010

position:92197:-1
position: 92197
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:93804:-1
position: 93804
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:92197-93804:-1:exon

TRD_RS00390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00390
old locus tag: trd_0082
inference: COORDINATES: protein motif:HMM:NF012356.2
GO function: GO:0003824 - catalytic activity [Evidence IEA]
GO process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: alpha-amylase family glycosyl hydrolase
translation: MEEERRWSWWQRAVIYHIYPRSFADSNGDGVGDLEGIRRKLDYLTWLGVDALWLSPIFRSPMADFGYDISDYLDVDPTFGTLEDLDRLIADAHARGIRVILDFVPNHTSDQHPWFIESRSHRDNPRRDWYIWADPAPDGGPPNNWRSVFGGSAWKFDTATGQYYLHTFLEEQPDLNWRNPEVQAAMLDVLRFWFARGVDGFRLDAIWFLIKDAELRDNPVDPDYTPDQPAYRELLPVYTSDRPEVHDILARMRQVADAFGERLLIGEIYLPIGRLVTYYGCRHRRELHLPFNFQLMLVPWEAQRIAAAIDTYEALLGPDDWPNWVLSNHDRPRVATRIGEEQARVAALLLLTLRGTPTIYYGDELGLADVPIPPDRRRDPLEHTIGPGAGRDPCRTPMPWDTSPYAGFSTVEPWLPLNPDYPKRNVAVQRDDPRSMLSLYRQLLILRRAEPALAIGSYRPVSATRDLLAYLREAAGRRLLVALDFGGREQVFTTTRFTLHGRILLSTHLDRAGEMVSGSLHLRPNEGCIVALAAH
SIO_010081: TRD_RS00390
subclass of: SO_0000673
so part of: TRD_RS00390
location: complement(92197..93804)
location: region:92197-93804:-1
so has part: feature:92197-93804:-1:exon

WP_041435815.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:92197-93804:-1:exon

TRD_RS00395
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00395
so part of: sequence
location: complement(93878..94135)
location: region:93878-94135:-1
so has part: feature:93878-94135:-1:exon
subclass of: SO_0000010

position:93878:-1
position: 93878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:94135:-1
position: 94135
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:93878-94135:-1:exon

TRD_RS00395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00395
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGEILPISAGILVGLICWRIASVRLRTAALVVLSVLFGALASLVNGELALSWGFLLIDIPLVFLVAVGTSLLVSRLVSARQTARR
SIO_010081: TRD_RS00395
subclass of: SO_0000673
so part of: TRD_RS00395
location: complement(93878..94135)
location: region:93878-94135:-1
so has part: feature:93878-94135:-1:exon

WP_041435818.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:93878-94135:-1:exon

TRD_RS00400
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: recG
locus tag: TRD_RS00400
old locus tag: trd_0084
so part of: sequence
location: 94450..96873
location: region:94450-96873:1
so has part: feature:94450-96873:1:exon
subclass of: SO_0000010

position:94450:1
position: 94450
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:96873:1
position: 96873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:94450-96873:1:exon

TRD_RS00400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: recG
locus tag: TRD_RS00400
old locus tag: trd_0084
EC number: 3.6.4.12
inference: COORDINATES: protein motif:HMM:NF008168.0
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-dependent DNA helicase RecG
translation: MTTGTSQDPFQLLRRILELEKRKGFQDTAAAGGLERLVARNLLGWLAEFPSQKARLQELAALFRGYADRSPAARAELVEKALAVLDGSASVPAEQTRRPARPRPAARTAPVRVDRAVEPDDPVTVLPGVGSQRARQLEALGVTTVRDLLFLVPRRYLDYTQVVPIGRLGRLVRPGEEVTCSVIGEVVQIETRETSGGRRYVSVQLRDETGTIPVIWFNPYIARQLEAGQRIAVSGRLEGHGPYVRFRNPEWEPAEAELLQAGRIVPVYPLTQGLYQRQVRQLTRAALDLALPRLEDPLPPALRERNRLPSLAWALEQLHYPETLAAAERARRRLAFDEFLVLQLGLVQRRLAWHAQAGIAIPIDRAFLETFLASLPFQLTGAQRRALEEILADLAEPHPMSRLLQGDVGSGKTVVAAAAALLVHRAGYQAAILAPTEILAEQHFRTLTRLYHGLPGGERPLVALLTGSTPERDRGSILAGLASGTISIIVGTHALLEERVQFRRLALAVIDEQHRFGVLQRHTLRSKGENPHVLVMTATPIPRSLALVLHGDLDLSIIDELPPGRQPVKTYVVPGRKRTQAYEFVRREIEKGHQAFIICPLVEESEAIEARAATAEYERLQREVFPDLRLGLLHGRMSPREKEDVMTRFRDGELHILVSTAVVEVGIDIPNATVILIEGAERFGLAQLHQFRGRVGRGSAPSYCLLVSDASTETARQRLEAVASTTDGFRLAEIDLELRGPGEFLGTRQSGLPNLRFASLADLSTLQAARRTAEDLLRQDPLLAAPEHVPLAELVRALWTRSVADVS
SIO_010081: TRD_RS00400
subclass of: SO_0000673
so part of: TRD_RS00400
location: 94450..96873
location: region:94450-96873:1
so has part: feature:94450-96873:1:exon

WP_012641498.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:94450-96873:1:exon

TRD_RS13405
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS13405
old locus tag: trd_0086
so part of: sequence
location: 96888..97676
location: region:96888-97676:1
so has part: feature:96888-97676:1:exon
subclass of: SO_0000010

position:96888:1
position: 96888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:97676:1
position: 97676
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:96888-97676:1:exon

TRD_RS13405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS13405
old locus tag: trd_0086
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPSPVFWLDESLLGRVLAPFLRPVLEQMGWELRQQRDLTAMTLRRFPGLALLDTIEALALVPAYALATDLALVAQHASVVALETPDRPDQIGEAVVVSEGCRPASRALARATIEPFFGLRIRAWDGEQGADALPVLRVHEDEAALGPLGERSHDLGRAWFVLTGQPFVSHLLVVAPELPSDVLRPVASLLQVLPEQLAGRAAEIAAELVAARPLDAGRLRVVLTEALSVVTPKVRKAVDELVRRSGSGLRLPPGEIYRPLAS
SIO_010081: TRD_RS13405
subclass of: SO_0000673
so part of: TRD_RS13405
location: 96888..97676
location: region:96888-97676:1
so has part: feature:96888-97676:1:exon

WP_012641499.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:96888-97676:1:exon

TRD_RS00410
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00410
old locus tag: trd_0085
so part of: sequence
location: complement(97655..98257)
location: region:97655-98257:-1
so has part: feature:97655-98257:-1:exon
subclass of: SO_0000010

position:97655:-1
position: 97655
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:98257:-1
position: 98257
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:97655-98257:-1:exon

TRD_RS00410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00410
old locus tag: trd_0085
inference: COORDINATES: protein motif:HMM:NF013756.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: flavin reductase family protein
translation: MGRKERREPRLAARLLEPGPVVLVTTHYRAQPNVMTAAWVIPLSLEPPRIGLAVHPSRLTHELLTKGEFFTLNIVTIEYLPALHLCGLLSGRDTDKFTRAQLHPTDALETDVPVLEEAIAQIECGLAARLSLGDHDLFVGEVLAVAADSELFGDRWLHLEEAPLAHHVGGEWYAALARVYRARLPDEEETEAEDHEASGR
SIO_010081: TRD_RS00410
subclass of: SO_0000673
so part of: TRD_RS00410
location: complement(97655..98257)
location: region:97655-98257:-1
so has part: feature:97655-98257:-1:exon

WP_012641500.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:97655-98257:-1:exon

TRD_RS00415
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00415
old locus tag: trd_0087
so part of: sequence
location: complement(98264..99388)
location: region:98264-99388:-1
so has part: feature:98264-99388:-1:exon
subclass of: SO_0000010

position:98264:-1
position: 98264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:99388:-1
position: 99388
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:98264-99388:-1:exon

TRD_RS00415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00415
old locus tag: trd_0087
EC number: 2.4.-.-
inference: COORDINATES: protein motif:HMM:NF012744.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycosyltransferase
translation: MVSKALVNGMYQRKLEELARLPGIELLAVVPPAWHESRVGVLQLERRFVQGYQLVVEPMWFNGHHHIHLYPGLGKQIARFRPDILHIDEEPYNLVTAHAALLGWRYGARMLFFTWQNLYRRYPPPFSWFERLNYRLASMAVAGNQEAAAVLRRKGYQGPLAVIPQFGVDPDLFRPLSVPRADVPTLGFVGRLVPEKGADLVIRALARLPVRVQLEIVGEGTERTRLELLAAQLGVRDRVIFRGSVPAALMPEALNRFDLLVVPSRTRRNWKEQFGRVIIEAMACGVPVVGSSSGEIPHVIGDPSLIFPEDDVEALARLLATLLVNPERLRELGEAGRRRVLAHYTQRRIAEQYYAVYQAMLAAPRARHSTAERS
SIO_010081: TRD_RS00415
subclass of: SO_0000673
so part of: TRD_RS00415
location: complement(98264..99388)
location: region:98264-99388:-1
so has part: feature:98264-99388:-1:exon

WP_226980701.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:98264-99388:-1:exon

TRD_RS00420
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00420
old locus tag: trd_0088
so part of: sequence
location: complement(99388..100584)
location: region:99388-100584:-1
so has part: feature:99388-100584:-1:exon
subclass of: SO_0000010

position:100584:-1
position: 100584
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:99388-100584:-1:exon

TRD_RS00420
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00420
old locus tag: trd_0088
inference: COORDINATES: protein motif:HMM:NF012744.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycosyltransferase family 1 protein
translation: MAGTRIDVLLDGAFIAQPRTGSGQYTLALWRELARNDDPVVTLALPAQPPVDLADAARALVLVPPTRWPSKVRKLWWEQRGIPQLARAVQPRLVHIPYFAAPLRLSTPFVVTVHDVIPLVLPEYRSSLAMRFYTALMRRTVRRARLILTDSEWSRKDIVRVLGYPAERIRVVPLGVEERFAPTPEPDATQALAQAWGITGPVVLNLGGFDVRKNLPLLVRAFARALPRLPAGTRLVIPGQPHSANPRLYPPLAPLIRELGLEQHVLLPGPVSEEEKLLWYRLASVYAYPSRYEGFGLSPLEAMACGTPVIAARCTSLPEVVGEAGILVEPEEDAFAEALVRVLTDAELRCTLRERGLARARMFSWQRTAEQTLTVYREAIAEAGGNGLRAVVGKPCGS
SIO_010081: TRD_RS00420
subclass of: SO_0000673
so part of: TRD_RS00420
location: complement(99388..100584)
location: region:99388-100584:-1
so has part: feature:99388-100584:-1:exon

WP_143714580.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:99388-100584:-1:exon

TRD_RS00425
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: rpmB
locus tag: TRD_RS00425
old locus tag: trd_0089
so part of: sequence
location: 100807..100998
location: region:100807-100998:1
so has part: feature:100807-100998:1:exon
subclass of: SO_0000010

position:100807:1
position: 100807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:100998:1
position: 100998
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:100807-100998:1:exon

TRD_RS00425
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: rpmB
locus tag: TRD_RS00425
old locus tag: trd_0089
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012641503.1
GO component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000311 - plastid large ribosomal subunit [Evidence IEA]
GO function: GO:0003735 - structural constituent of ribosome [Evidence IEA]
GO process: GO:0006412 - translation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 50S ribosomal protein L28
translation: MAMCELCGKKPMFGHNVSHSNRKTNRKFKPNVQRVTVILNGVPKRMRICTRCLRTLYKEAREA
SIO_010081: TRD_RS00425
subclass of: SO_0000673
so part of: TRD_RS00425
location: 100807..100998
location: region:100807-100998:1
so has part: feature:100807-100998:1:exon

WP_012641503.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:100807-100998:1:exon

TRD_RS00430
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: prmC
locus tag: TRD_RS00430
old locus tag: trd_0090
so part of: sequence
location: complement(101023..101874)
location: region:101023-101874:-1
so has part: feature:101023-101874:-1:exon
subclass of: SO_0000010

position:101023:-1
position: 101023
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:101874:-1
position: 101874
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:101023-101874:-1:exon

TRD_RS00430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: prmC
locus tag: TRD_RS00430
old locus tag: trd_0090
EC number: 2.1.1.297
inference: COORDINATES: protein motif:HMM:TIGR00536.1
GO function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO process: GO:0018364 - peptidyl-glutamine methylation [Evidence IEA]; GO:0006412 - translation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: peptide chain release factor N(5)-glutamine methyltransferase
translation: MLTLRDVLRRATERLRQSGSPTPRLDAEVLLCHVLGIDRAELYRRLPEQPPGTLERFWELVARRERGEPVAYLTGHREFYGLDFLVTPETLIPRPETEFLVTWAAERLRARHDEPRCVDVGTGCGAIIVSLAVTLGKQHPAVLVGSDRSLAALQVARVNRERLAPGRVHLVCGDLLSWCRGPLDLVVANLPYLRPDQWHPGLAWEPAEALFAPDEGFGWYARLLPQVATLLRSGGGCIVEIDPAQAERALSTARSLFPHGKIAIRRDLAGLSRYLTIELPDPT
SIO_010081: TRD_RS00430
subclass of: SO_0000673
so part of: TRD_RS00430
location: complement(101023..101874)
location: region:101023-101874:-1
so has part: feature:101023-101874:-1:exon

WP_012641504.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:101023-101874:-1:exon

TRD_RS00435
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: prfA
locus tag: TRD_RS00435
old locus tag: trd_0091
so part of: sequence
location: complement(101883..102974)
location: region:101883-102974:-1
so has part: feature:101883-102974:-1:exon
subclass of: SO_0000010

position:101883:-1
position: 101883
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:102974:-1
position: 102974
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:101883-102974:-1:exon

TRD_RS00435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: prfA
locus tag: TRD_RS00435
old locus tag: trd_0091
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003202249.1
GO function: GO:0003747 - translation release factor activity [Evidence IEA]
GO process: GO:0006415 - translational termination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: peptide chain release factor 1
translation: MTTQTVSVLDKLAELEQRFDEVERQLADPDVATDPQRVAQLARERAELEEIVALYRQLKDIDRQVAQAEELLEAEDPDLVELAAEEIDRLREYRETIYQELRRRLVPRDPNDEKDVIVEIRAGTGGEEAALFAADLFRMYTRYAERQGWKVEVLSSSPTELGGFKEIIFEVRGKGAYSHFKHESGVHRVQRVPITESSGRIHTSTATVAVLPEADEVEVHIDEDDLRIEVFRSSGHGGQSVNTTDSAVRITHLPTGIVVSCQDERSQLKNRLKAMAVLRARLYELQRRKLEEERTGLRRQQVGTGERAEKIRTYNFPQDRVTDHRLKLTVNNLPAVLDGEIDIFIQELQALEMAERLRAAGID
SIO_010081: TRD_RS00435
subclass of: SO_0000673
so part of: TRD_RS00435
location: complement(101883..102974)
location: region:101883-102974:-1
so has part: feature:101883-102974:-1:exon

WP_012641505.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:101883-102974:-1:exon

TRD_RS00440
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00440
old locus tag: trd_0092
so part of: sequence
location: complement(102971..103480)
location: region:102971-103480:-1
so has part: feature:102971-103480:-1:exon
subclass of: SO_0000010

position:102971:-1
position: 102971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:103480:-1
position: 103480
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:102971-103480:-1:exon

TRD_RS00440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00440
old locus tag: trd_0092
inference: COORDINATES: protein motif:HMM:TIGR00725.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TIGR00725 family protein
translation: MKSARHVAVCGPHEATPEEQALAERLGELLAVSGLTVVCGGRGGVMAAVCRGAKRRGGQTIGILPGTDPSDANEWVDHPICTGLGEARNVVVVASGRVVIAVGGGLGTLSEIALALKLGRPVIALRSWPLDASLLSRAGATISEVATPEEAVNQVLAVLSVQPTGGAEL
SIO_010081: TRD_RS00440
subclass of: SO_0000673
so part of: TRD_RS00440
location: complement(102971..103480)
location: region:102971-103480:-1
so has part: feature:102971-103480:-1:exon

WP_012641506.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:102971-103480:-1:exon

TRD_RS00445
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: thpR
locus tag: TRD_RS00445
old locus tag: trd_0093
so part of: sequence
location: complement(103477..104076)
location: region:103477-104076:-1
so has part: feature:103477-104076:-1:exon
subclass of: SO_0000010

position:103477:-1
position: 103477
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:104076:-1
position: 104076
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:103477-104076:-1:exon

TRD_RS00445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: thpR
locus tag: TRD_RS00445
old locus tag: trd_0093
inference: COORDINATES: protein motif:HMM:TIGR02258.1
GO function: GO:0008664 - 2'-5'-RNA ligase activity [Evidence IEA]
GO process: GO:0008033 - tRNA processing [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RNA 2',3'-cyclic phosphodiesterase
translation: MRPRGRAAMREEWRLFAAIPVPDDVRQRVAAAIAHLQARGYRAKWVDPEATHLTVKFFGSVATDSLPDLTRALRKSVTGLARFELQVHGAGAFPHPLRPRVLWLGIDGETAPLAQLVEQVERSAGSFAEKTDERPFHPHLTLARVRPEDLATLRALPQELERLARLPPLPFTVDRLTLYRSELFRSGPRYTIIEEFLLR
SIO_010081: TRD_RS00445
subclass of: SO_0000673
so part of: TRD_RS00445
location: complement(103477..104076)
location: region:103477-104076:-1
so has part: feature:103477-104076:-1:exon

WP_226980702.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:103477-104076:-1:exon

TRD_RS00450
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00450
old locus tag: trd_0094
so part of: sequence
location: 104245..104499
location: region:104245-104499:1
so has part: feature:104245-104499:1:exon
subclass of: SO_0000010

position:104245:1
position: 104245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:104499:1
position: 104499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:104245-104499:1:exon

TRD_RS00450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00450
old locus tag: trd_0094
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MESREPIDCWQELGLPFPPERLRGRLVPCPQCGAPLALMRRRRFYALCATVEETSQGAVLICRQCGARQPVRELLLSGRRARTG
SIO_010081: TRD_RS00450
subclass of: SO_0000673
so part of: TRD_RS00450
location: 104245..104499
location: region:104245-104499:1
so has part: feature:104245-104499:1:exon

WP_012641508.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:104245-104499:1:exon

TRD_RS00455
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: pheA
locus tag: TRD_RS00455
old locus tag: trd_0095
so part of: sequence
location: 104551..105408
location: region:104551-105408:1
so has part: feature:104551-105408:1:exon
subclass of: SO_0000010

position:104551:1
position: 104551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:105408:1
position: 105408
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:104551-105408:1:exon

TRD_RS00455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: pheA
locus tag: TRD_RS00455
old locus tag: trd_0095
EC number: 4.2.1.51
inference: COORDINATES: protein motif:HMM:NF008865.0
GO function: GO:0004664 - prephenate dehydratase activity [Evidence IEA]
GO process: GO:0009094 - L-phenylalanine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: prephenate dehydratase
translation: MRLAYLGPPGTFTEEAALRYAERESAELIPFSSMPALVSAVETGLADRAILPIENSLEGTVSTTVDLLIHETDLKICAELILPVRHFLLAHPGTRLEEIRVVLSHPQALAQCRRFLERCLPQAEQVAALSTAAAVAEVMRSEDRSRAAIGTLRAAELYGAVVLARDIQDQKSNATRFVVLAHQDAEPTGVDRTSLCFTVKRNVPGALVEVLNELAVANIQMTKVESRPMKSVLGEYVFLVDIEGHRKDPHIAAALERVAEKAAELKIFGSYPRDEDGLNGTRGSR
SIO_010081: TRD_RS00455
subclass of: SO_0000673
so part of: TRD_RS00455
location: 104551..105408
location: region:104551-105408:1
so has part: feature:104551-105408:1:exon

WP_012641509.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:104551-105408:1:exon

TRD_RS00460
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00460
old locus tag: trd_0096
so part of: sequence
location: 105421..106008
location: region:105421-106008:1
so has part: feature:105421-106008:1:exon
subclass of: SO_0000010

position:105421:1
position: 105421
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:106008:1
position: 106008
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:105421-106008:1:exon

TRD_RS00460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00460
old locus tag: trd_0096
inference: COORDINATES: protein motif:HMM:NF015559.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RsmD family RNA methyltransferase
translation: MRVIGGSARGRRLKAPRGLRTRPMADKIREALFSMLDSLGIRPQRVLDLYAGSGAIGIETLSRGARWVDFVDRSAAACAVIRDNLTATGFADRGAVHCTTVQAFLRRPPREPYDFVIMDPPYADPTIHETMLAVARSPHVRDGTILVVGHSPRVPMPERLDGLEQLRDRCHGDSCVAIYVIRRGERAEAEDEGDP
SIO_010081: TRD_RS00460
subclass of: SO_0000673
so part of: TRD_RS00460
location: 105421..106008
location: region:105421-106008:1
so has part: feature:105421-106008:1:exon

WP_012641510.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:105421-106008:1:exon

TRD_RS00465
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: coaD
locus tag: TRD_RS00465
old locus tag: trd_0097
so part of: sequence
location: 106005..106508
location: region:106005-106508:1
so has part: feature:106005-106508:1:exon
subclass of: SO_0000010

position:106005:1
position: 106005
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:106508:1
position: 106508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:106005-106508:1:exon

TRD_RS00465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: coaD
locus tag: TRD_RS00465
old locus tag: trd_0097
EC number: 2.7.7.3
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012641511.1
GO function: GO:0004595 - pantetheine-phosphate adenylyltransferase activity [Evidence IEA]
GO process: GO:0015937 - coenzyme A biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: pantetheine-phosphate adenylyltransferase
translation: MSHRALYPGTFDPITNGHVDVVQRAARLFDFLIVGIYAGHEGRAKQPLFSAEERRFLAEQALRHLPNVRVDVFSGLAVDYARAVGAQAIVRGLRAVSDFEYEFSLAHMYRHLAPDVDVVCLMTSSQYSFISSSMIKEVAQLGGNLTGLVPDHVAEALVQKFRTLVRE
SIO_010081: TRD_RS00465
subclass of: SO_0000673
so part of: TRD_RS00465
location: 106005..106508
location: region:106005-106508:1
so has part: feature:106005-106508:1:exon

WP_012641511.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:106005-106508:1:exon

TRD_RS00470
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00470
old locus tag: trd_0098
so part of: sequence
location: 106513..107001
location: region:106513-107001:1
so has part: feature:106513-107001:1:exon
subclass of: SO_0000010

position:106513:1
position: 106513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:107001:1
position: 107001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:106513-107001:1:exon

TRD_RS00470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00470
old locus tag: trd_0098
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MASVDELRGYPVAEPAPDLYQLLERLQELAERSRRMPFSNSLMIDEHELLDLVYSLRQAFPRELRQARRVLQDRQQIIAEAQLEAQRILATAQERAQYLMSEQGIMNETRARCEEMLRQAMERKQRIMSETDEYVRQMLEQIEAAALSTLQHVQRVKTELKL
SIO_010081: TRD_RS00470
subclass of: SO_0000673
so part of: TRD_RS00470
location: 106513..107001
location: region:106513-107001:1
so has part: feature:106513-107001:1:exon

WP_012641512.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:106513-107001:1:exon

TRD_RS00480
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00480
old locus tag: trd_0100
so part of: sequence
location: complement(107247..109160)
location: region:107247-109160:-1
so has part: feature:107247-109160:-1:exon
subclass of: SO_0000010

position:107247:-1
position: 107247
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:109160:-1
position: 109160
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:107247-109160:-1:exon

TRD_RS00480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00480
old locus tag: trd_0100
inference: COORDINATES: protein motif:HMM:NF012245.2
GO component: GO:0016020 - membrane [Evidence IEA]
GO process: GO:0007165 - signal transduction [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: methyl-accepting chemotaxis protein
translation: MQRLLADSQRTRQDYEERLSYWRSVLPEGEIRQSLTEQAADPAREFFDIRDRQVIPALLAGETARAEELIWNELRPRFEAHRSAIDRTVELGYASVNNSEQSAEGVVARVNVLVPAVSLISALLATLLAALMARLLTKRLGHVAKALDELTTHDIPALERALGALARGDLRATVSFKVRPSELTGRDEVATLIGAYNRLQSALGNVEQSFRTLVEGLRDMVTSLRGAAALINDVGADVHRRVEQTTVAIQSMTGAAERVARGSADQANALTGLRQSLTELAQTSDALAKAAADQARVVHQAFELASEINRQNREAAQTARAVGRLATEHAQHAQRGQRAVERTLGAITRAQAKSTEAQKRVDEMVKHAQSIDQVLTIVRSITEQTNLLALNAAIEAARAGEAGRGFAVVTEEVRKLSANAAESTTHIAELVHQLQNSAASAGQAATESLEAMTGVVTETNTVSDLFESTAEAARELATLSERALTLAEQALKSVEYLRAQLEQAASTVEETSAGTAELATSVATISTTASQLSAIGEENAQASEHASNAMEEISHELSEVAHNAQALFQLAQQLLRETERFLLDQPVAHAQADSSRRLLPVDSVHSLGDGLALPVAASRTGSLMPAPSRWTNGHGEP
SIO_010081: TRD_RS00480
subclass of: SO_0000673
so part of: TRD_RS00480
location: complement(107247..109160)
location: region:107247-109160:-1
so has part: feature:107247-109160:-1:exon

WP_169302272.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:107247-109160:-1:exon

TRD_RS00485
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00485
old locus tag: trd_0101
so part of: sequence
location: complement(109215..109424)
location: region:109215-109424:-1
so has part: feature:109215-109424:-1:exon
subclass of: SO_0000010

position:109215:-1
position: 109215
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:109424:-1
position: 109424
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:109215-109424:-1:exon

TRD_RS00485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00485
old locus tag: trd_0101
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVGFIARFRLGYQMGLMVLVFLTGFILSSAVSMYGLRQVMVNGPLYQQIARDQELIADILPPPAYIVDA
SIO_010081: TRD_RS00485
subclass of: SO_0000673
so part of: TRD_RS00485
location: complement(109215..109424)
location: region:109215-109424:-1
so has part: feature:109215-109424:-1:exon

WP_012641515.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:109215-109424:-1:exon

TRD_RS00490
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: trpE
locus tag: TRD_RS00490
old locus tag: trd_0102
so part of: sequence
location: 110224..111843
location: region:110224-111843:1
so has part: feature:110224-111843:1:exon
subclass of: SO_0000010

position:110224:1
position: 110224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:111843:1
position: 111843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:110224-111843:1:exon

TRD_RS00490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: trpE
locus tag: TRD_RS00490
old locus tag: trd_0102
EC number: 4.1.3.27
inference: COORDINATES: protein motif:HMM:TIGR00564.1
GO function: GO:0004049 - anthranilate synthase activity [Evidence IEA]
GO process: GO:0000162 - tryptophan biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: anthranilate synthase component I
translation: MTRTDAALRSPARRYHPSLEEVAVLAREATVIPIYRELDADLETPVSAFLKVASEPYAFLLESVEGGERLARYSFIGTDPFLLVELDRGCARLRRTGTRTAFAAPALASFGGADYYEPPTAEQVTTFSDPLRFLERLLARYRTVHLPGMPRFLGGAVGYLGYEAIRYFEPRVPAAPRDTLGMPEAVFLLVDSMLVFDHLEHTIAVVSHVHVEEGISLAQAYADAVERIERLVDRLRRPPVIPFGPGPVDPESVEARLRPHVEPAQYVAMVERAKEYIAAGDVIQVVLSQRQELETGAHPFTIYRALRRINPSPYMYFLRLGDDALIGASPEMLVRVDGRELSTHPIAGTRRRGRTPEEDAALAEELAADEKERAEHIMLVDLARNDIGRVAQPGTVHVPRLMVVERYSHVMHLVSEVAGRLREDLSALDALRSCFPAGTVSGAPKVRAMEIIAELEPEQRGPYAGAVGYVDFSGNLDTAITLRTIVMRGQRAFLQAGAGIVADSVPEFEHKECHHKMRALVRAIEQAERLETEQRGGRA
SIO_010081: TRD_RS00490
subclass of: SO_0000673
so part of: TRD_RS00490
location: 110224..111843
location: region:110224-111843:1
so has part: feature:110224-111843:1:exon

WP_012641516.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:110224-111843:1:exon

TRD_RS00495
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00495
old locus tag: trd_0103
so part of: sequence
location: 111840..112451
location: region:111840-112451:1
so has part: feature:111840-112451:1:exon
subclass of: SO_0000010

position:111840:1
position: 111840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:112451:1
position: 112451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:111840-112451:1:exon

TRD_RS00495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00495
old locus tag: trd_0103
inference: COORDINATES: protein motif:HMM:NF012345.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: aminodeoxychorismate/anthranilate synthase component II
translation: MILVIDNYDSFTFNLVQYLAELGADLVVFRNDAVTVEEIEDLAPAGIVVSPGPCTPREAGISVPVIQRFRGRVPILGVCLGHQAIGAAYGARIVRAPRLMHGKTSWITHDGKGVFAGLPNPFLATRYHSLMVEEESLPEDLVVTARSEDGVIMGVRDRTGLVEGVQFHPESILTAVGKELLRNFLHQVDTHQRELVSSKGGTA
SIO_010081: TRD_RS00495
subclass of: SO_0000673
so part of: TRD_RS00495
location: 111840..112451
location: region:111840-112451:1
so has part: feature:111840-112451:1:exon

WP_012641517.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:111840-112451:1:exon

TRD_RS00500
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: trpD
locus tag: TRD_RS00500
old locus tag: trd_0104
so part of: sequence
location: 112448..113494
location: region:112448-113494:1
so has part: feature:112448-113494:1:exon
subclass of: SO_0000010

position:112448:1
position: 112448
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:113494:1
position: 113494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:112448-113494:1:exon

TRD_RS00500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: trpD
locus tag: TRD_RS00500
old locus tag: trd_0104
EC number: 2.4.2.18
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012641518.1
GO function: GO:0004048 - anthranilate phosphoribosyltransferase activity [Evidence IEA]
GO process: GO:0000162 - tryptophan biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: anthranilate phosphoribosyltransferase
translation: MIGSVLQKVVAGQILDIDEAMEAMSAIMTGEATPAQIAALVTALRMRGERETEIAGFVKGLRAHMIPVELQLAQPVIDVVGTGGDGNRTFNISTATAFVVAGAGVPVAKHGNRAMSSRAGSADVLEALGVRIDLNPSAVARCVEEAGIGFMFAQRFHPALRHAAPVRRELGFRTVFNVLGPLANPARVRYQLLGVAMPELVETVARVLALLDVEHALVVHSADGLDEISLGAPTTVYEVRRNGTVEVRRWTLEPESLGLERVPSDALRGGTAEENARIVRAVLEGARGPARDVVLLNAAAALVAADAAQSLAEGLELARHAIDSGAALDRLERLKVLSNALAEAEVPS
SIO_010081: TRD_RS00500
subclass of: SO_0000673
so part of: TRD_RS00500
location: 112448..113494
location: region:112448-113494:1
so has part: feature:112448-113494:1:exon

WP_012641518.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:112448-113494:1:exon

TRD_RS00505
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: trpC
locus tag: TRD_RS00505
old locus tag: trd_0105
so part of: sequence
location: 113491..114318
location: region:113491-114318:1
so has part: feature:113491-114318:1:exon
subclass of: SO_0000010

position:113491:1
position: 113491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:114318:1
position: 114318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:113491-114318:1:exon

TRD_RS00505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: trpC
locus tag: TRD_RS00505
old locus tag: trd_0105
EC number: 4.1.1.48
inference: COORDINATES: protein motif:HMM:NF001377.0
GO function: GO:0004425 - indole-3-glycerol-phosphate synthase activity [Evidence IEA]
GO process: GO:0006568 - tryptophan metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: indole-3-glycerol phosphate synthase TrpC
translation: MTRTGTVLDRIVERTSADLAERRRRVPEGALRAQAHEQAPPVPLVPALRADRVSVIAEVKRGSPSRGLFAPEADAAAVAMDYLAGGAAALSVLTDEPFFHGSLKDLAVVARLAHASPGPVPVLRKDFLLDPYQIVEARAHGADAVLLIVAVLDRWQLAELLGVTWELGMEALVEVHDESELATAVEAGARVIGINNRDLRTFTVDLTVSERLAPLVPADRVVVAESGIHSVADVERLARAGIDAILVGEALMMAPDRRAIVQALGSVEVVRCRGS
SIO_010081: TRD_RS00505
subclass of: SO_0000673
so part of: TRD_RS00505
location: 113491..114318
location: region:113491-114318:1
so has part: feature:113491-114318:1:exon

WP_012641519.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:113491-114318:1:exon

TRD_RS00510
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00510
old locus tag: trd_0106
so part of: sequence
location: 114303..114995
location: region:114303-114995:1
so has part: feature:114303-114995:1:exon
subclass of: SO_0000010

position:114303:1
position: 114303
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:114995:1
position: 114995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:114303-114995:1:exon

TRD_RS00510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00510
old locus tag: trd_0106
inference: COORDINATES: protein motif:HMM:NF012900.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phosphoribosylanthranilate isomerase
translation: MPGLVKLCGMRTPEDARAAIETGADLIGLVFAPSRRRVSLEEARAICRTVRESRNPPRIVGLFVDAPVDEIAMIASALELDLVQLHGNEPPEVLARLGWPALKAIRLRPGESLEAACDRIAPYFSRERNPLAILLDAYHPSLLGGTGQIVDWTLAAELAARFPIILAGGLRPETVAEAIALVRPLGVDVSSGIERDGHKDPQLMQAFVAAARRAFLTLDRPAEIRIGGMR
SIO_010081: TRD_RS00510
subclass of: SO_0000673
so part of: TRD_RS00510
location: 114303..114995
location: region:114303-114995:1
so has part: feature:114303-114995:1:exon

WP_012641520.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:114303-114995:1:exon

TRD_RS00515
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: trpB
locus tag: TRD_RS00515
old locus tag: trd_0107
so part of: sequence
location: 114992..116206
location: region:114992-116206:1
so has part: feature:114992-116206:1:exon
subclass of: SO_0000010

position:114992:1
position: 114992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:116206:1
position: 116206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:114992-116206:1:exon

TRD_RS00515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: trpB
locus tag: TRD_RS00515
old locus tag: trd_0107
EC number: 4.2.1.20
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018036536.1
GO function: GO:0004834 - tryptophan synthase activity [Evidence IEA]
GO process: GO:0000162 - tryptophan biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tryptophan synthase subunit beta
translation: MTTRTQPVRQLPDERGRFGEFGGMYAPVTLLPAIEELIAAYEDARRDPAFQAEFERLLRDFVGRPTPLYYAASLTETVGGARIFLKREDLAHTGAHKINNAVGQGLLAKRMGKPRVIAETGAGQHGVATATVCAMLGLECVVYMGELDVQRQSLNVFRMKLLGAEVRPVSSGSRTLKDAMNEAIRDWVTNVRTTYYLVGSVAGMHPYPMIVRDFQSVIGKETREQVLAAVGRLPDAVVACVGGGSNAIGIFSAFLEDESVELHGAEAAGEGIETGRHAASLTAGRVGVLHGSRSFVLQDEDGQIVEAHSIAAGLDYPGVGPEHAYLKVTGRAQYHAITDAEALAAFQLLCRTEGIIPALESAHAIALAVRLAKERPRDQVIVVNLSGRGDKDMQTVASALGVTL
SIO_010081: TRD_RS00515
subclass of: SO_0000673
so part of: TRD_RS00515
location: 114992..116206
location: region:114992-116206:1
so has part: feature:114992-116206:1:exon

WP_012641521.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:114992-116206:1:exon

TRD_RS00520
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: trpA
locus tag: TRD_RS00520
old locus tag: trd_0108
so part of: sequence
location: 116206..117036
location: region:116206-117036:1
so has part: feature:116206-117036:1:exon
subclass of: SO_0000010

position:117036:1
position: 117036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:116206-117036:1:exon

TRD_RS00520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: trpA
locus tag: TRD_RS00520
old locus tag: trd_0108
EC number: 4.2.1.20
inference: COORDINATES: protein motif:HMM:NF012511.2
GO function: GO:0004834 - tryptophan synthase activity [Evidence IEA]
GO process: GO:0000162 - tryptophan biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tryptophan synthase subunit alpha
translation: MRRTSRIADAFAALRARGQLGIIPYLTIGYPQRESTLELVPALVRGGACAVELGIPFSDPLADGVTIQRASHVALANGVTVRFCLETAARLREQGVDVPLVFMGYFNPLLQYGLERFVHACVEVGVDGVIVPDLPPNESDELHALCRAAGRDLIFMVAPTSTDRHLREVAARASGFVYCVSLTGVTGARERLPDDLPAFLQRVRAVTALPLALGFGISRPEHVSQARGLVDAVVVGSALLDRLAGEPPEGQAAAAESFIAWLRQGADAVAPVGEGS
SIO_010081: TRD_RS00520
subclass of: SO_0000673
so part of: TRD_RS00520
location: 116206..117036
location: region:116206-117036:1
so has part: feature:116206-117036:1:exon

WP_012641522.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:116206-117036:1:exon

TRD_RS00525
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: aroH
locus tag: TRD_RS00525
old locus tag: trd_0109
so part of: sequence
location: 117043..117459
location: region:117043-117459:1
so has part: feature:117043-117459:1:exon
subclass of: SO_0000010

position:117043:1
position: 117043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:117459:1
position: 117459
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:117043-117459:1:exon

TRD_RS00525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: aroH
locus tag: TRD_RS00525
old locus tag: trd_0109
EC number: 5.4.99.5
inference: COORDINATES: protein motif:HMM:NF019356.2
GO function: GO:0004106 - chorismate mutase activity [Evidence IEA]
GO process: GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chorismate mutase
translation: MVQCRGIRGATTVEANTAEAIVQATRELLLALVEANGVEPDQIASIIFTTTRDLTATFPAVAARELGWIHVPLLCAHEMDVPGAPMGVVRVLMHVNTEKSPREIRHVYLRGARVLRPEFGQDLTVLTEDRRGMGGAEQ
SIO_010081: TRD_RS00525
subclass of: SO_0000673
so part of: TRD_RS00525
location: 117043..117459
location: region:117043-117459:1
so has part: feature:117043-117459:1:exon

WP_012641523.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:117043-117459:1:exon

TRD_RS00530
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: aroF
locus tag: TRD_RS00530
old locus tag: trd_0110
so part of: sequence
location: 117456..118514
location: region:117456-118514:1
so has part: feature:117456-118514:1:exon
subclass of: SO_0000010

position:117456:1
position: 117456
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:118514:1
position: 118514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:117456-118514:1:exon

TRD_RS00530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: aroF
locus tag: TRD_RS00530
old locus tag: trd_0110
EC number: 2.5.1.54
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012641854.1
GO function: GO:0003849 - 3-deoxy-7-phosphoheptulonate synthase activity [Evidence IEA]
GO process: GO:0009423 - chorismate biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 3-deoxy-7-phosphoheptulonate synthase
translation: MIVVMQPGATQEQIQAVIDRVAEFGFQTKLAPGAERMVIGVVGSPLPDTLKEALERLPGVEEVIRVSKRYKLVSREFYPLDTVIQVRDVTIGGNEVVVIAGPCSVENERQILETARAVKAAGASMLRGGAFKPRTSPYEFRGLGEQGLKLLAKAREETGLPIVTEVLSAQHVDLVAEYADLLQIGARNCQNYLLLEAVGRAKKPVLLKRGMAVQIEEWLLAAEYIVAQGNEQVLLCERGIRTFETFTRNTLDLNAVPAVKHLSHLPIIVDPSHGTGRWFMVPAMMLAAVAAGADGLIVEVHPNPDHALSDGAQSLTPENFAAVMPKLAAVARAVGRSLRGVATAEPSLSPAD
SIO_010081: TRD_RS00530
subclass of: SO_0000673
so part of: TRD_RS00530
location: 117456..118514
location: region:117456-118514:1
so has part: feature:117456-118514:1:exon

WP_012641524.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:117456-118514:1:exon

TRD_RS00535
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: hisIE
locus tag: TRD_RS00535
old locus tag: trd_0112
so part of: sequence
location: 118523..119179
location: region:118523-119179:1
so has part: feature:118523-119179:1:exon
subclass of: SO_0000010

position:118523:1
position: 118523
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:119179:1
position: 119179
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:118523-119179:1:exon

TRD_RS00535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: hisIE
locus tag: TRD_RS00535
old locus tag: trd_0112
EC number: 3.5.4.19
EC number: 3.6.1.31
inference: COORDINATES: protein motif:HMM:NF002747.0
GO function: GO:0004635 - phosphoribosyl-AMP cyclohydrolase activity [Evidence IEA]; GO:0004636 - phosphoribosyl-ATP diphosphatase activity [Evidence IEA]
GO process: GO:0000105 - histidine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE
translation: MSDDALARLLGAIRFGADGLVPLIVQDATTGQVRMVGYVNADAVRRTVETGRVHFWSRSRQRLWMKGETSGHVLELVELRTDCDGDALLARVHPHGPTCHTGRPSCFDTEPLVGTSQDPVNATILDELASIIAARAVEPQPGSYTSALLQAGVDRIARKIGEEAAEVIVAAKNGEPEAIAQEAADLLYHLLVLLQASGVPAGEVWRVLQARRGRHSSS
SIO_010081: TRD_RS00535
subclass of: SO_0000673
so part of: TRD_RS00535
location: 118523..119179
location: region:118523-119179:1
so has part: feature:118523-119179:1:exon

WP_012641525.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:118523-119179:1:exon

TRD_RS00540
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: rimM
locus tag: TRD_RS00540
old locus tag: trd_0111
so part of: sequence
location: complement(119164..119718)
location: region:119164-119718:-1
so has part: feature:119164-119718:-1:exon
subclass of: SO_0000010

position:119164:-1
position: 119164
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:119718:-1
position: 119718
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:119164-119718:-1:exon

TRD_RS00540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: rimM
locus tag: TRD_RS00540
old locus tag: trd_0111
inference: COORDINATES: protein motif:HMM:TIGR02273.1
GO function: GO:0003723 - RNA binding [Evidence IEA]
GO process: GO:0006364 - rRNA processing [Evidence IEA]
note: Essential for efficient processing of 16S rRNA; Essential for efficient processing of 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribosome maturation factor RimM
translation: MTRSTPNRQPPVERPASPERLSIGRIVGAHGVRGTVKLKIWTHFPERIPHLEYVYLGEEPTPRRLLRARVQGDLAFLQLEGITTRNEAEAMRGVVVRIDRSQAAPLGEDEYYQFEILGLQVVDEAGNVLGRVIEILETGANDVYVVQRPDGSELLLPAIRSVILAVDLEQQRLVVRPPRYYDEE
SIO_010081: TRD_RS00540
subclass of: SO_0000673
so part of: TRD_RS00540
location: complement(119164..119718)
location: region:119164-119718:-1
so has part: feature:119164-119718:-1:exon

WP_012641526.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:119164-119718:-1:exon

TRD_RS00545
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00545
old locus tag: trd_0113
so part of: sequence
location: complement(119681..120028)
location: region:119681-120028:-1
so has part: feature:119681-120028:-1:exon
subclass of: SO_0000010

position:119681:-1
position: 119681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:120028:-1
position: 120028
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:119681-120028:-1:exon

TRD_RS00545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00545
old locus tag: trd_0113
inference: COORDINATES: protein motif:HMM:NF024483.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: KH domain-containing protein
translation: MQRRDGQRPPQRPPRRERPPIDPDLAMNRLATLVRYIAGQLVDDPDAIQVRARRRGRAVILRLSVPHDQLGKVIGREGKIARAIRTMLGIAAVRQGVHASLTIDDQIDAQPTATS
SIO_010081: TRD_RS00545
subclass of: SO_0000673
so part of: TRD_RS00545
location: complement(119681..120028)
location: region:119681-120028:-1
so has part: feature:119681-120028:-1:exon

WP_012641527.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:119681-120028:-1:exon

TRD_RS00550
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: rpsP
locus tag: TRD_RS00550
old locus tag: trd_0114
so part of: sequence
location: complement(120041..120340)
location: region:120041-120340:-1
so has part: feature:120041-120340:-1:exon
subclass of: SO_0000010

position:120041:-1
position: 120041
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:120340:-1
position: 120340
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:120041-120340:-1:exon

TRD_RS00550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: rpsP
locus tag: TRD_RS00550
old locus tag: trd_0114
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012641528.1
GO component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000314 - organellar small ribosomal subunit [Evidence IEA]
GO function: GO:0003735 - structural constituent of ribosome [Evidence IEA]
GO process: GO:0006412 - translation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 30S ribosomal protein S16
translation: MIKLRLRRMGKKRQPHYRIVAAEARWPRDGRFIEVIGYYNPRTDPYTLEVNVERARWWLEHGAQPTDTVRALLVRAGVLPPRQQNEAKRETAETAQPEA
SIO_010081: TRD_RS00550
subclass of: SO_0000673
so part of: TRD_RS00550
location: complement(120041..120340)
location: region:120041-120340:-1
so has part: feature:120041-120340:-1:exon

WP_012641528.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:120041-120340:-1:exon

TRD_RS00555
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00555
old locus tag: trd_0115
so part of: sequence
location: complement(120815..121135)
location: region:120815-121135:-1
so has part: feature:120815-121135:-1:exon
subclass of: SO_0000010

position:120815:-1
position: 120815
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:121135:-1
position: 121135
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:120815-121135:-1:exon

TRD_RS00555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00555
old locus tag: trd_0115
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005375828.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: heavy metal-binding domain-containing protein
translation: MLITTTTAIEGRPVKEYLGVVTGEAILGANIFRDIFASIRDIVGGRSGAYEKELRKAREIAFQEMAEAARQLGANAVIGVDIDYETIDMGGSNMLMVTVSGTAVRI
SIO_010081: TRD_RS00555
subclass of: SO_0000673
so part of: TRD_RS00555
location: complement(120815..121135)
location: region:120815-121135:-1
so has part: feature:120815-121135:-1:exon

WP_143714686.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:120815-121135:-1:exon

TRD_RS00560
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00560
old locus tag: trd_0116
so part of: sequence
location: complement(121514..122797)
location: region:121514-122797:-1
so has part: feature:121514-122797:-1:exon
subclass of: SO_0000010

position:121514:-1
position: 121514
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:122797:-1
position: 122797
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:121514-122797:-1:exon

TRD_RS00560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00560
old locus tag: trd_0116
inference: COORDINATES: protein motif:HMM:NF012656.2
GO function: GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: acyl-CoA dehydrogenase family protein
translation: MDGVRAEVLEFVEETKRYVYEELMPLEDEIERTDYLPPEVIADVAKRGYFGMTIPKEYGGLGFNLLETCMVLEQIHKAPLAIGYVVDLNNGIGSLAILHGGSEELKREYLPRLARGEIIGVFAMSEPQVGSDGQGISTRAEWRDGYWVLNGVKYWITWAERGDVFTVAAATDPGKGAHGGISVFLVPKGTPGMRVARRQKMMGNAGIDESVLVFEDCKVPAENLLGELGWGFRLLMRTLDEGRVKCCSLAIGYAERAWELAMAYVKRRQAFGQRLADFQGIQWQLAEAATTIWLSRLAMYEAARKIDRGEFAAKEAAMAKLYSTEACQHVVDTAVQLFGARGYCRDYPLERIYRNYRSLRIVEGTSEIQRRIIWKQMSKLYDPERAPDERTREHAIRVERMLERALAVDRPYQDWGFRYLDEVAADD
SIO_010081: TRD_RS00560
subclass of: SO_0000673
so part of: TRD_RS00560
location: complement(121514..122797)
location: region:121514-122797:-1
so has part: feature:121514-122797:-1:exon

WP_052294021.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:121514-122797:-1:exon

TRD_RS00565
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00565
old locus tag: trd_0117
so part of: sequence
location: complement(122797..124947)
location: region:122797-124947:-1
so has part: feature:122797-124947:-1:exon
subclass of: SO_0000010

position:124947:-1
position: 124947
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:122797-124947:-1:exon

TRD_RS00565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00565
old locus tag: trd_0117
inference: COORDINATES: protein motif:HMM:NF024938.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: acetate--CoA ligase family protein
translation: MQSEMLAPLLRPRSIVVVGASPRRRMARTVLSNLRTFGFRGPVWALHPSGEAVEGFPCFRTVEDLPETPDCAVIALSPENTLQAFRALAERGVRAAVLLGSGFAEAGPSGLAIQQEITAIARDRGIAVCGPNCLGLVTPDARATLTGYHLPGDLATGPAAAVVQSGSVFWSLAHNTRSLRFRYLVSSGNEAVLTAADYFAAALSDPHVRLLVGFLEVVRDGERFLDVIQAAHARSVPIVLLKVGRSELARATVLVHTGAIAGSDAIFRDIMRQYGVILVETLDELYDTAEFLLAGRWPRSFRVGVVTDSGGEKALIADWGERIGLEFPPLSPKTAERLRTVLAPYVKLENPLDAWGSGNFDEVYPATLAAFAEDPNIETIVLGTDMVRETEEAHLYAEAMLALRERTAKPLAVVTNQATGLDCTEVQRLRAAGIPVLQGTEYGYRAIAHAARYSQWRASAPDSLAPPSSLGEIRQEIERWHQRATRSAHDQPVTLTEYEAKQILARIGLPIPSERWVTCLEEALAAADEIGFPVVLKAQGPNLLHKSDLGAVRLGISDRQALIEAWQGMVETLAATPSLEVTGYLVQRQIPHGLELLLGCLRDSTFGMVVSVGLGGEFVEIWRDVVYRKAPVSPEEADRMLSELRGAALLAGHRRLAPRDRRAAAEAIARFSWFAVAAADLIEVAEVNPLIVLEEGRGAWAVDSLIVLRAPERRDG
SIO_010081: TRD_RS00565
subclass of: SO_0000673
so part of: TRD_RS00565
location: complement(122797..124947)
location: region:122797-124947:-1
so has part: feature:122797-124947:-1:exon

WP_012641531.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:122797-124947:-1:exon

TRD_RS00570
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00570
old locus tag: trd_0118
so part of: sequence
location: complement(124965..125399)
location: region:124965-125399:-1
so has part: feature:124965-125399:-1:exon
subclass of: SO_0000010

position:124965:-1
position: 124965
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:125399:-1
position: 125399
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:124965-125399:-1:exon

TRD_RS00570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00570
old locus tag: trd_0118
EC number: 3.1.2.-
inference: COORDINATES: protein motif:HMM:NF024675.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: thioesterase family protein
translation: MQAELESFRFWYPWRVRYRDCDMQGIVYFSVYFEYVEQAIMEYFRQIGVPIGKTIHEGSFDWAFAHAEIDYRAPVAFDDLVSIGIRIPKRGRSSFEVHFAVVDAARERVHAHGRLVLVCYDSRSRRSCPLPDFVREKIEAFEGA
SIO_010081: TRD_RS00570
subclass of: SO_0000673
so part of: TRD_RS00570
location: complement(124965..125399)
location: region:124965-125399:-1
so has part: feature:124965-125399:-1:exon

WP_169302273.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:124965-125399:-1:exon

TRD_RS00575
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00575
old locus tag: trd_0119
so part of: sequence
location: complement(125806..126990)
location: region:125806-126990:-1
so has part: feature:125806-126990:-1:exon
subclass of: SO_0000010

position:125806:-1
position: 125806
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:126990:-1
position: 126990
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:125806-126990:-1:exon

TRD_RS00575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00575
old locus tag: trd_0119
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012642257.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter substrate-binding protein
translation: MADRIDALLQFLARQQRLRRRELLGGLLAAGTLAACRQAATPTPTPAPAATPTPAAQAPAGEFAVPGYDDPNRWKGRSIVVTSWGGALQDALRKTIYQPFSRLTGCQIVEDTTDEAKLRTMVESGTVEWDVVDVGTESVIPMGRLNLLEPLDYSKIDTTDIFPELVLEHGVGYFYYSTCLAYRKDKFPDKPPQSWADFWDVQGFPGPRAFQKYIQWGPLEAALLADGVPIDQLYPPDVDRAFRALDRLKPHVTVWWEAGAQPAQLLTDGEVYLTDAWIARIQFLIEQGSTVLGYTWNQGRLSSDSLVIPRGSKNVDVAHDFINFALRPEVQRAFALAYPDGPANKRAFEALPAERVAVLPSAPQNKALQVYPDYQWWADHLDEVVERFNSWIAR
SIO_010081: TRD_RS00575
subclass of: SO_0000673
so part of: TRD_RS00575
location: complement(125806..126990)
location: region:125806-126990:-1
so has part: feature:125806-126990:-1:exon

WP_012641533.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:125806-126990:-1:exon

TRD_RS00580
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00580
old locus tag: trd_0120
so part of: sequence
location: complement(127029..128195)
location: region:127029-128195:-1
so has part: feature:127029-128195:-1:exon
subclass of: SO_0000010

position:127029:-1
position: 127029
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:128195:-1
position: 128195
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:127029-128195:-1:exon

TRD_RS00580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00580
old locus tag: trd_0120
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012641537.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: FAD-binding oxidoreductase
translation: MPSYDVLIIGGGNLGLWTAYFLAKRGLHRIAVCERYWAGFGATTRSAGIVRQQGGSETAVKLGKWSRELYQELGRELGLGSGFVEVGYYVLASTPEERAAFQELVTLRQRCGVENTWLEPSELAQRLPFVDWSRYLGATYTPNDGFVYPHIVARNITHAVLRAGVALFEECEVQEIEPLASGYRVRTTRGTFEAERVVDAAGPRGARRIGELVGIDVPVSAARHQIVSFPTRPADLPANFPMLFVLAKGYYLRPDEHGLLLGMSNPAEQPDPTDRFLLEFDWDYFERLKPDWEATIPALRGLPIGRAWTGSIDYTPDHLPIIDEPRFGFYVLAAGGHGMMWGPALGMKMAELILDERVSDLPDEEIRLSRFQEPGKVRDAIALPFPTR
SIO_010081: TRD_RS00580
subclass of: SO_0000673
so part of: TRD_RS00580
location: complement(127029..128195)
location: region:127029-128195:-1
so has part: feature:127029-128195:-1:exon

WP_012641534.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:127029-128195:-1:exon

TRD_RS00585
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00585
old locus tag: trd_0121
so part of: sequence
location: complement(128242..129378)
location: region:128242-129378:-1
so has part: feature:128242-129378:-1:exon
subclass of: SO_0000010

position:128242:-1
position: 128242
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:129378:-1
position: 129378
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:128242-129378:-1:exon

TRD_RS00585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00585
old locus tag: trd_0121
inference: COORDINATES: protein motif:HMM:NF013044.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: aromatic ring-hydroxylating dioxygenase subunit alpha
translation: MKVESISLVPTLPGRYYVDPAIYAREQERIFGRLWTCIGLAQSLAEPGQYLTTQLAGEPLLVIRGHDGELRAFLNVCRHRGARLCTESRGCLESRVIQCPYHAWSYALDGRLIGAPNMRDVPEFSPERYGLVPVPLAVWEGMIWVNLSNDPPPVESQIVPRIIERLGDRAIFDRYGVGQLRIGATLTYDVQANWKLIVENFMECYHCAVVHPELSRLVPSFRAGYAYQEGVGATFAEGVETLTLTGKRTRPLLPGLRPEDDRTYYGMVLVPNIFVNLHPDYVLIHRLEPLDVGRTLVHCDWLFDPAIVATPDFDPSDAVELWDLVNRQDWAMCERCQLGVGSRVYAEGGVFAPIEAHIRRFNDWVLTQLGDVATDSST
SIO_010081: TRD_RS00585
subclass of: SO_0000673
so part of: TRD_RS00585
location: complement(128242..129378)
location: region:128242-129378:-1
so has part: feature:128242-129378:-1:exon

WP_012641535.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:128242-129378:-1:exon

TRD_RS00590
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00590
old locus tag: trd_0123
so part of: sequence
location: complement(129807..130970)
location: region:129807-130970:-1
so has part: feature:129807-130970:-1:exon
subclass of: SO_0000010

position:129807:-1
position: 129807
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:130970:-1
position: 130970
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:129807-130970:-1:exon

TRD_RS00590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00590
old locus tag: trd_0123
EC number: 1.-.-.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012641534.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: FAD-dependent oxidoreductase
translation: MSSDDVVIVGGGNLGLWTAYHLAQRGVRRILVCERYWAGYGATVRSAGIMRQQGGSETAVKLGKWSRELYRKLGQELGLDSGFREVGYYVVASSPMEKAVFQRLVELRTAHGVPNEWLDPEDLARRLPYVDWSRFAGATYTPNDGYVEPAIIVRNIVMAVRAAGVELLEQCEVQGIEPLTSGYRVETSRGVFETERVIDAGGPRGARRIAEFVGIDVPVAASRHMVISFPERPPDMPANFPMMFVLAAGFYLRPDEQGVLLGFSNPLEQPDPSDRYLLEFDWDYFEKLKPEWEATIPSLAGKAIGRAWTGSIDYTPDQLPIIDEPRFGFYVLAAGGHGIMWGPALGMKMAELVTEERLSDLDPEEVRLRRFTEGRMATDAIHLPFPH
SIO_010081: TRD_RS00590
subclass of: SO_0000673
so part of: TRD_RS00590
location: complement(129807..130970)
location: region:129807-130970:-1
so has part: feature:129807-130970:-1:exon

WP_012641537.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:129807-130970:-1:exon

TRD_RS00595
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00595
old locus tag: trd_0124
so part of: sequence
location: complement(131009..131506)
location: region:131009-131506:-1
so has part: feature:131009-131506:-1:exon
subclass of: SO_0000010

position:131009:-1
position: 131009
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:131506:-1
position: 131506
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:131009-131506:-1:exon

TRD_RS00595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00595
old locus tag: trd_0124
inference: COORDINATES: protein motif:HMM:NF017999.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: carbon monoxide dehydrogenase subunit G
translation: MSARGEHGGDVTAGAETLLPASRERVWQFRLDIPLSTRCLPGVHDVVQVGERTFRGSVRFRAGFVQFACDATVELTELIPPERIRLTALATDPLTRETVTAHAVAELREDGERTAIRYTLTVSSPGLFGSLGWRMLEEVNRRMIDAFFRCVERTLLSEQPVETHE
SIO_010081: TRD_RS00595
subclass of: SO_0000673
so part of: TRD_RS00595
location: complement(131009..131506)
location: region:131009-131506:-1
so has part: feature:131009-131506:-1:exon

WP_012641538.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:131009-131506:-1:exon

TRD_RS00600
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00600
old locus tag: trd_0125
so part of: sequence
location: 131800..133335
location: region:131800-133335:1
so has part: feature:131800-133335:1:exon
subclass of: SO_0000010

position:131800:1
position: 131800
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:133335:1
position: 133335
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:131800-133335:1:exon

TRD_RS00600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00600
old locus tag: trd_0125
inference: COORDINATES: protein motif:HMM:NF019520.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PucR family transcriptional regulator
translation: MGITVRELLEHPELKTRLVAGAAGLDRVITWAHVCELEDPTVWLSGGELVMTVGIGIPRDEAGQVAYIERLARARLSGLMICEGMRAPALSDAMLETADRLAVPVLLAAYDVPFVAVSRVVADANLGDEHERLRRTVQIYEVARLVVHGTAEDAELRGRLERILAARLIVLDLVLGQELLPVTVPEPEFLRAVRRAVERYPEGQLPAVVQLPELASGAIALPVPTRGRTFLVVVPKDRRRGHDVVVLRHVATVVALALERKAVERERQRRLAGELLAQLVDQRLNPDLAHELLLREHGFPEPPYAIAAVPELAVRLEELHTMLEGQFVPHAVIRRDGYFLVLLPDSSDALEVMRALATDRAIGWSDPIRSLSRIPVAVVEARWAAHVQERGLQRYAAVRGGALGWPLSLEAAQELVARVVAPVQAYDATHGTALLPSLRTFLACNGSWSETARRLSIHRQTLLYRLRRVEMLTGLRVDRLDDLATLWLAMRAAQILGADASNSAPQGSVVD
SIO_010081: TRD_RS00600
subclass of: SO_0000673
so part of: TRD_RS00600
location: 131800..133335
location: region:131800-133335:1
so has part: feature:131800-133335:1:exon

WP_012641539.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:131800-133335:1:exon

TRD_RS00605
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00605
old locus tag: trd_0126
so part of: sequence
location: 133642..133724
location: region:133642-133724:1
so has part: feature:133642-133724:1:exon
subclass of: SO_0000663

position:133642:1
position: 133642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:133724:1
position: 133724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:133642-133724:1:exon

TRD_RS00605
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 309801
locus tag: TRD_RS00605
old locus tag: trd_0126
product: tRNA-Leu
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:133675..133677,aa:Leu,seq:caa)
SIO_010081: TRD_RS00605
subclass of: SO_0000673
so part of: TRD_RS00605
location: 133642..133724
location: region:133642-133724:1
so has part: feature:133642-133724:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:133642-133724:1:exon

TRD_RS00610
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00610
old locus tag: trd_0127
so part of: sequence
location: complement(133752..134702)
location: region:133752-134702:-1
so has part: feature:133752-134702:-1:exon
subclass of: SO_0000010

position:133752:-1
position: 133752
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:134702:-1
position: 134702
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:133752-134702:-1:exon

TRD_RS00610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00610
old locus tag: trd_0127
inference: COORDINATES: protein motif:HMM:NF012798.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MPCGRRTSLRPRTWAGYESIVRVRIIPALGRLPLDKVEPQVLQAFASQLLTQGLSVQSVQNTHPLLHRPFADAVKWGLLGRNPCDLVDLSRASRLQLRALTAPEVARLLATCADDPLGPLVTVAVLSGLRLRELLALQWGDIDWERSEPSVVRSLQRVRGQGLVVVPPKTAASRRRVPLSPLALEALRRQRRHQVEWRLAAGPTWAEGDWVFTSVRGVPLDPAETTRRFHRLLERAGLPHRRFHDLRHTTASLLLADGVHPKVVASILGHSTVQVTLDVYSRVTPGLARQAAERLQQLVANSIAHSALASREEGGR
SIO_010081: TRD_RS00610
subclass of: SO_0000673
so part of: TRD_RS00610
location: complement(133752..134702)
location: region:133752-134702:-1
so has part: feature:133752-134702:-1:exon

WP_012641540.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:133752-134702:-1:exon

TRD_RS00620
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00620
old locus tag: trd_0129
so part of: sequence
location: complement(135215..135898)
location: region:135215-135898:-1
so has part: feature:135215-135898:-1:exon
subclass of: SO_0000010

position:135215:-1
position: 135215
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:135898:-1
position: 135898
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:135215-135898:-1:exon

TRD_RS00620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00620
old locus tag: trd_0129
inference: COORDINATES: protein motif:HMM:NF019349.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GntR family transcriptional regulator
translation: MPAGLGNSRGHRQLLHQQAYEVIRNAIVQSDLPPGSVVSERTLSEQFGFGRAPIRAAIQRLAAEGFLLIVPQQGIIVASPSLEEVRDLFELRVALESYVVRRLALEPQEVDFVHLELLLEKQEKAAQEQNVRLYRQLDVDFHLFLAHSLGNSELYSSMERLSDRLHRIIASVISRRPARMLDSTIEHRAIVQAIATGDPDAAEMAMITHLDWAWNFLTGGHLPRHGR
SIO_010081: TRD_RS00620
subclass of: SO_0000673
so part of: TRD_RS00620
location: complement(135215..135898)
location: region:135215-135898:-1
so has part: feature:135215-135898:-1:exon

WP_012641542.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:135215-135898:-1:exon

TRD_RS00625
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00625
old locus tag: trd_0130
so part of: sequence
location: complement(135951..136790)
location: region:135951-136790:-1
so has part: feature:135951-136790:-1:exon
subclass of: SO_0000010

position:135951:-1
position: 135951
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:136790:-1
position: 136790
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:135951-136790:-1:exon

TRD_RS00625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00625
old locus tag: trd_0130
inference: COORDINATES: protein motif:HMM:NF028206.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phosphogluconate dehydrogenase C-terminal domain-containing protein
translation: MQVAFRTIGIVGAAGRMGTRVRTRLAQRPELELLLVDVGKGAEQLQQEGLHVVSGVEAAQRSDVLVLAVPDNKIAAVAQELVPFVRSGCAVLYLDPAVPFAGVLPQRPDVTYFVVHPSHPPLFQDEETPEARRDHWGGIAPQSIVCTLLQGPEEHYQPCEQLAKEIFAPIRAAYRLNIHQMALLEPILSEAIAYTLLSVLRDAYHEAVARGIPEPAVRDFLLGHIRVELAILFGEIQWRPSDAAERVRMWTYPRLIKENWRRLFDDDQLHECVQIILES
SIO_010081: TRD_RS00625
subclass of: SO_0000673
so part of: TRD_RS00625
location: complement(135951..136790)
location: region:135951-136790:-1
so has part: feature:135951-136790:-1:exon

WP_012641543.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:135951-136790:-1:exon

TRD_RS00630
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00630
old locus tag: trd_0131
so part of: sequence
location: complement(136830..138155)
location: region:136830-138155:-1
so has part: feature:136830-138155:-1:exon
subclass of: SO_0000010

position:136830:-1
position: 136830
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:138155:-1
position: 138155
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:136830-138155:-1:exon

TRD_RS00630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00630
old locus tag: trd_0131
inference: COORDINATES: protein motif:HMM:NF018682.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: four-carbon acid sugar kinase family protein
translation: MSVDFAYIADDFTGATDVLEALASAGARARLYLDCAPSAVEPGLQAIGIATTARATAAAELPNVLAPLFDALVSLQPAIVQYKVCSTFDSSPEIGNIATVISTAWERFPYQSVLPVIVGAPRLGRWVVFGNLFARYGVTAKIYRLDRHPVMRFHPITPMEESDLGVILHHQGLPHPVEYLTVLDYTLDQSTSFEKFQRTDRTVLIADTLLEEHLTTLGRLVLAALRTPALVIGSSGATQAICNALIERGKFCGEPLLAAPYPVDPVLVVSGSCSRVSANQTQRAIQAGFCEIAIVPDKLLHNDAYIEEVAEKIAQQLCRGKSVIAHTCSGPDDPRLLNRHSPWERLHLGRELGRQLGELVARVAGRVPVRRIIVTGGDTSGYVALAAGLKALDPIAVIAPGAPLCRACAPQTCLDGIEFCFKGGQTGPEDFYLIARDGVKT
SIO_010081: TRD_RS00630
subclass of: SO_0000673
so part of: TRD_RS00630
location: complement(136830..138155)
location: region:136830-138155:-1
so has part: feature:136830-138155:-1:exon

WP_012641544.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:136830-138155:-1:exon

TRD_RS00635
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00635
old locus tag: trd_0132
so part of: sequence
location: complement(138155..139411)
location: region:138155-139411:-1
so has part: feature:138155-139411:-1:exon
subclass of: SO_0000010

position:139411:-1
position: 139411
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:138155-139411:-1:exon

TRD_RS00635
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00635
old locus tag: trd_0132
inference: COORDINATES: protein motif:HMM:NF012246.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribulose-bisphosphate carboxylase large subunit family protein
translation: MSFVRATYYVETPLTLEAAAEALASEQSTGTFIAVPLETAELKARYRARIERIELIETRSRPTLPGSRPASGSYQCGFVELAFPLENMGCNLPTLMATLAGNLFELSELSAIRLVDLDLPDEFAQAYTGPRFGIQGTRDIAQVYDRPLIGTIIKPSVGLSPEQTAVVVRELVEAGIDFIKDDELMANPPHNPLPARARAVMRVIRDYADRTGKYVIYAFNISDRLEDMIRHIEILVEEGARCCMVSLNWVGIAAFDYLRRNCPLIIHGHRNGWGMMTRAPGLGMDFRAYQKIWRLAGVDHLHVNGLANKFWEPDDSVVRSIHDMLQPLFGGYFAMPVISSGQWGGQAPDTYRRCRTIDLLYLAGGGIFAHPHGVAAGIRAIREAWEAAVAGISLAEYAQTHPDLAAALHHFGTARRGR
SIO_010081: TRD_RS00635
subclass of: SO_0000673
so part of: TRD_RS00635
location: complement(138155..139411)
location: region:138155-139411:-1
so has part: feature:138155-139411:-1:exon

WP_012641545.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:138155-139411:-1:exon

TRD_RS00640
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00640
old locus tag: trd_0133
so part of: sequence
location: complement(139413..140465)
location: region:139413-140465:-1
so has part: feature:139413-140465:-1:exon
subclass of: SO_0000010

position:139413:-1
position: 139413
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:140465:-1
position: 140465
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:139413-140465:-1:exon

TRD_RS00640
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00640
old locus tag: trd_0133
inference: COORDINATES: protein motif:HMM:NF013567.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Gfo/Idh/MocA family oxidoreductase
translation: MIEKDRLRLALIGCGYFARYHAAAWRVIPQVELVAVCDRAPERAQAFAEQFDVPRYYTNPEALFRAERLDIVDIVTTPESHRELVELAARYGVHVICQKPMALSEADCVAMVESCERAGVSFMVHENFRWQRIFRRARTLTEAIGEPFFLRLWFRSHYDVFARQPYLATAERFIILDLGVHLLDLARFLMRDEFSTLYCITQRVHPQIRGEDVATILLRSRRGAAASIELSYASFAPRELFPQTLALIEGPLGTVLVEADGLLRLITSSGHTEERLAPPSLPWQEPPGEWIQEAVLAIQQHFVDCLRRGLMPETHGRDNLRTMQLVFAAYRSADTTSSIALDQSESERRG
SIO_010081: TRD_RS00640
subclass of: SO_0000673
so part of: TRD_RS00640
location: complement(139413..140465)
location: region:139413-140465:-1
so has part: feature:139413-140465:-1:exon

WP_012641546.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:139413-140465:-1:exon

TRD_RS14555
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS14555
so part of: sequence
location: complement(140462..141532)
location: region:140462-141532:-1
so has part: feature:140462-141532:-1:exon
subclass of: SO_0000010

position:140462:-1
position: 140462
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:141532:-1
position: 141532
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:140462-141532:-1:exon

TRD_RS14555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS14555
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDRLTHCLALLQPDHLRLDVHAASVQADYLRAAAHLAKRTATPLLIALYATDPAQVQEVVPLLTALDAPLKALMLHHPAEKVTPPALLAALGDELHRIGPLPLAAGTDFFFAELNRDPHPWPQADWIVFTMTPGVHALDDRSLLLNATIQGQVVESARAVAGGRPILVSPITLRMRRNPNATTGGWDIPREEQVDRRLHAVFGAAWLLQSLASLATAQPVAVTYFELAGSLGIFAEHGSAPGDRQNSEETLSFTPLASVMHRLLRTARNGARWFRARSTNPVQIQTLGILLQERWELLIANPWPSPQVVEITHLPGTIEGIDALHPLASPSMPALSQAVPLLALPPNAVVVLWGRR
SIO_010081: TRD_RS14555
subclass of: SO_0000673
so part of: TRD_RS14555
location: complement(140462..141532)
location: region:140462-141532:-1
so has part: feature:140462-141532:-1:exon

WP_143714582.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:140462-141532:-1:exon

TRD_RS00650
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00650
old locus tag: trd_0135
so part of: sequence
location: complement(142309..143841)
location: region:142309-143841:-1
so has part: feature:142309-143841:-1:exon
subclass of: SO_0000010

position:142309:-1
position: 142309
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:143841:-1
position: 143841
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:142309-143841:-1:exon

TRD_RS00650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00650
old locus tag: trd_0135
inference: COORDINATES: protein motif:HMM:NF013697.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: extracellular solute-binding protein
translation: MADRLTRREVLRAGTGALVGLLAACSQQQASKTPAPSPAAQSTGQAAAGTPAVSGEPRFDGVTLKYMSHPGQIHPIITHHLDYLKEKYGISIQIIDSPDPTSYQDAMRDIRAGGGQFDIYMIFPRYNGELAAAGGIRELDDLIQKYNAKPLWDNIMDAYRILYSEWHGKIITAPVDGDVAMMYYRKDAFENPDYQKQFKEKYGFDLRVPRTWEECLKIAEFFTGWAWGPTGKPGYGFQTSTWDRAFIEQQWAPMMASAGGNWLTEDLDPGWNNDAGTRALIDLKHFLDFAPPGSISLSWNQTMETVFANDVAIILWYMDLGRLGWSPNSWFAKSGGPEKMKNIGYAEWPGYEINGKYRNYNSMFYGRVVAISKFSKNPDAAFMVLKTLLTPERRVLSMDDDQSGSDMFLKTDYDPSVFKKLTPTKEFLDVAKVVITKGFPEMQIPGVGEYMDALQGQIHAYLTGSESDPKKALQAAAERWKEITDRYNRSKQKEYWLEVLERYRKAGLQV
SIO_010081: TRD_RS00650
subclass of: SO_0000673
so part of: TRD_RS00650
location: complement(142309..143841)
location: region:142309-143841:-1
so has part: feature:142309-143841:-1:exon

WP_012641548.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:142309-143841:-1:exon

TRD_RS00655
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00655
old locus tag: trd_0136
so part of: sequence
location: complement(143893..144774)
location: region:143893-144774:-1
so has part: feature:143893-144774:-1:exon
subclass of: SO_0000010

position:143893:-1
position: 143893
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:144774:-1
position: 144774
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:143893-144774:-1:exon

TRD_RS00655
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00655
old locus tag: trd_0136
inference: COORDINATES: protein motif:HMM:NF012738.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: sugar ABC transporter permease
translation: MRHAKRAGYIFVGPATLLLLLYALVPLLWTLYYAVYRFSPNPSVPPEFTGIGNFLDLWADPQFRGALLNTLLLGLIGIPLQLLLGFLAALGLSALDHSRWFGLLFAAVMLPIAVAPIVAGIAWWLLFNTRFGAVNGILLRLGAPLIDWTVSMPWALLTIVVAFVWFGTPVAAVLLYSGLTSIPRTLVEAARVDGATGLQLVRAIILPLLQPFFGLSGIFLLTELLRLYELPFYLTQGGPGNSTVVLGIYLFKLAFNFFDLGRSAALALLYVILLSLVAIGYVRLLARTAQETA
SIO_010081: TRD_RS00655
subclass of: SO_0000673
so part of: TRD_RS00655
location: complement(143893..144774)
location: region:143893-144774:-1
so has part: feature:143893-144774:-1:exon

WP_012641549.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:143893-144774:-1:exon

TRD_RS00660
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00660
old locus tag: trd_0137
so part of: sequence
location: complement(144776..145684)
location: region:144776-145684:-1
so has part: feature:144776-145684:-1:exon
subclass of: SO_0000010

position:144776:-1
position: 144776
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:145684:-1
position: 145684
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:144776-145684:-1:exon

TRD_RS00660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00660
old locus tag: trd_0137
inference: COORDINATES: protein motif:HMM:NF012738.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: carbohydrate ABC transporter permease
translation: MRTSEATTGPYPIVPAEVARPIRSTGRRLRHRLIWATMIIFALFCIVPIYWILITALRPRGEIFESPALLYPQHITLDNLRYVWLGSQTNDPVLPFVFTSFLVATASACLTLFLSLPAAYALSRWRVGGNHLAMWILSQRFIPPIAVIVPLYLLYRRIGWLDTYHGLILLYTVINIPITVWILRNYIDALPRDIEEAALVDGATPVQILRHIVLPLSWPSLGAAAILAFLAIWNEYVFAYQLAGRNVAMVTVYFPRLRSAIGELYGEVAAAGLLALLPALLVTGFLRRYIVRGLTLGGGREL
SIO_010081: TRD_RS00660
subclass of: SO_0000673
so part of: TRD_RS00660
location: complement(144776..145684)
location: region:144776-145684:-1
so has part: feature:144776-145684:-1:exon

WP_012641550.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:144776-145684:-1:exon

TRD_RS00665
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00665
old locus tag: trd_0138
so part of: sequence
location: complement(146292..146597)
location: region:146292-146597:-1
so has part: feature:146292-146597:-1:exon
subclass of: SO_0000010

position:146292:-1
position: 146292
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:146597:-1
position: 146597
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:146292-146597:-1:exon

TRD_RS00665
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00665
old locus tag: trd_0138
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MYGSIFHLHPKPGQKATIRQLFEQWDRERAPRVQGFHAGYLFQPDRSSDELIGVAIFADRESYRKNATDPKQDERYRSLRALLTEDPRWEDGEIIEAAERT
SIO_010081: TRD_RS00665
subclass of: SO_0000673
so part of: TRD_RS00665
location: complement(146292..146597)
location: region:146292-146597:-1
so has part: feature:146292-146597:-1:exon

WP_012641551.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:146292-146597:-1:exon

TRD_RS00670
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00670
old locus tag: trd_0139
so part of: sequence
location: complement(146698..146988)
location: region:146698-146988:-1
so has part: feature:146698-146988:-1:exon
subclass of: SO_0000010

position:146698:-1
position: 146698
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:146988:-1
position: 146988
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:146698-146988:-1:exon

TRD_RS00670
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00670
old locus tag: trd_0139
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MYATYVVREMDAATRAMTLERAANEFWPQLRAAAGFRHYYLIQQSDSQTLGIILWDTAEQAAAFAAVTDGWQSTMDNLGHRRIVSGGGDVLEIAEG
SIO_010081: TRD_RS00670
subclass of: SO_0000673
so part of: TRD_RS00670
location: complement(146698..146988)
location: region:146698-146988:-1
so has part: feature:146698-146988:-1:exon

WP_012641552.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:146698-146988:-1:exon

TRD_RS00675
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00675
old locus tag: trd_0140
so part of: sequence
location: complement(147115..148035)
location: region:147115-148035:-1
so has part: feature:147115-148035:-1:exon
subclass of: SO_0000010

position:147115:-1
position: 147115
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:148035:-1
position: 148035
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:147115-148035:-1:exon

TRD_RS00675
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00675
old locus tag: trd_0140
inference: COORDINATES: protein motif:HMM:NF012376.2
GO function: GO:0016787 - hydrolase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: metallophosphoesterase
translation: MSRLRCSIIALVFLAACTTSHAATITPHATEAITTTSATPARPVILWAVGDAATCRSKQDDEIAAFLAQQPGIIALLGDVVYERGTPEEFARCFDPLYGPLKDRLRPAVGNHEYGSRDAGPYFEYFGARAGLPGQGWYSYDLGEWHIIVLNSNCKPVGGCDEKSPQYQWLKADLTTHPARCTLAYWHHPRWSSGEHGSFESMQPIWSLLVRSGVDIVLSGHDHDYERFQPLDADGHPDPRHGTMQFVVGTGGRSLRPLGNPLPTSAIGTDTTFGVLRLELYPDHYSWEFVTIPGANFTDSGSAACH
SIO_010081: TRD_RS00675
subclass of: SO_0000673
so part of: TRD_RS00675
location: complement(147115..148035)
location: region:147115-148035:-1
so has part: feature:147115-148035:-1:exon

WP_052294023.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:147115-148035:-1:exon

TRD_RS00680
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00680
old locus tag: trd_0141
so part of: sequence
location: complement(148057..152910)
location: region:148057-152910:-1
so has part: feature:148057-152910:-1:exon
subclass of: SO_0000010

position:148057:-1
position: 148057
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:152910:-1
position: 152910
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:148057-152910:-1:exon

TRD_RS00680
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00680
old locus tag: trd_0141
inference: COORDINATES: protein motif:HMM:NF012376.2
GO function: GO:0016787 - hydrolase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: metallophosphoesterase
translation: MNDGREQSLHIRSMRRVRRLPPLLLACALVTGLFGARPQPAAAASCATSGPSTGTYLVTVCLTQPVSGAFVSGDITVTASVTTSGAAPRVQRLIYSLDGTYLLTEFFSPYTFRLPTRQWADGQHTLSASALMSDGFTSAPTSITLFLQNGMSSPPPIPTGFQPTSGTTPPAGQPFRVVAVGDGGDDGTYSAQVAQLIGTQSPNLFLYLGDLYEKGSYTEFVNYYGLNGQLFSAYRSITNPIVGNHEYEGRVAEGYVRYWQSPPDFYSLDAGGWHIIALNSNSQFGQYGPGTPQYEWLLRDLQAHRDACTIAFFHHPRFSIGPQGDTPALQPIWELLFQFGVELVLVGHDHDYQRWMPLDRDGQPHPNGIVQLVIGTGGHGIRAFARSDSRVAAGFDQPPSAYGVLTASLFSDRADLAFVDLAGQVRDSTTVACHGPNDTMAPSAPTGLRATLVSSQQVALSWDAATDDYAVTSYEILRDGVVIGIVPGTTRTFLDNTPQPDQTYSYQVVALDAVGNRSTASAPVTISTRTTLFADDFESGTLSRWSAVSGLTITTLQPHTGQYAARALSTRGTVAYARTLLPSAQTDVTVETWFYLAARGTNDQVTLVRLLKPTGGGLGFVQIAADGLLAFRNEVTGTTITTTASVSMNAWHQLRLRLVTGSGGRVELWYDSNQLISSAQSFGSSSVGQIQIGEHKTKRTFDVRFDDVLVTPPAAPPPDTTPPDTTLTSTPPLSTAETTATFSFTASEPATFQCSLDGADWQTCSSPVTFSNLATGPHTFSVFAVDRAGNADPTPASFAWEITAPIAPETTLLTTPPALTNQTTATFTFSSSDTAASFECQLDATPAVPCASPWTLSDLTEGLHTFSVRAIDGEGVPDPTPASWSWTIDTTAPPAPGSVTASALSSTQVSLSWTSVTDASGIAGYDVYRDGTLLVQLGPVTSVTDSTVQPATTYQYTIRARDNAGNVSSDSVPATVTTPSLRLFEDDFESGSLVRWSSVSGLTITTDAPYSGTYAAQALSTSGTPAYALGNLARPVSEFSYRIRFQLVSQGNNPVYLVKWRRGTTSLGGVYLTSTGRLGIRNDIAGQALSTTTLVTTGAWHTLETHVRTGPDGFVEVWYDGIRIHQSFQNFGANQATAIQLGENSTGRIFDVRFDEVVADTAAIDAPPDSTPPETTITSAPPSTTDQTSATFSFTANELATFRCSLDGAPAQPCTSPVTYTGLAVGTHTFSVTATDLAGNTDPTPATFNWEVTATSTAPETVLTETPPLLTNSTQASFAFHSDDPSATFQCQLDGAAPAPCTSPLTLTNLSEGAHTFTVTAVNASGNVDPTPASWAWTIDVTPPPAPTGVGATPGNGQVTITWQRVSDANGIASYEIYRDGTLLTSVGDTTSYVDSSVQPNTTYSYTVAARDRAGNASAQSDPVSVTTGRFVLFADDFESGTLNAWTTVSGLTLTTTDPYAGTYAAQALSTSGTPAYAITALPNSASDLHVRVRFFVATQGANTVYLLKLRTPTGTSLGGVFISSTGKLGFRNDIAGQSTTTTVAVSPGTWHTLLLHVVVSTSGTVELWYDGMQIASISGNLGTDPIGGFQLGENRTGRTFDVRFDDVLLDTQPIAG
SIO_010081: TRD_RS00680
subclass of: SO_0000673
so part of: TRD_RS00680
location: complement(148057..152910)
location: region:148057-152910:-1
so has part: feature:148057-152910:-1:exon

WP_012641554.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:148057-152910:-1:exon

TRD_RS00685
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00685
old locus tag: trd_0142
so part of: sequence
location: complement(153163..154236)
location: region:153163-154236:-1
so has part: feature:153163-154236:-1:exon
subclass of: SO_0000010

position:153163:-1
position: 153163
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:154236:-1
position: 154236
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:153163-154236:-1:exon

TRD_RS00685
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00685
old locus tag: trd_0142
inference: COORDINATES: protein motif:HMM:NF021921.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: lipoate--protein ligase
translation: MRVRVVDLGLVDPIRSQSVYHAVGYTFRSDTLPTILLVSPTTPYVSIGFHQDAEREVDLDYCRSVGLPVIRREVGGGAVYLDQHQVFTQWIFPRALVPLRLEERFAWYVRPFVETYRRWGIEATWRPINDVHVRGRKIGGTGAASIGEAEILVGSLMLDFDTRQMARVLKVASEKMRDKVFESLEEYMTTMHRELGTLPDRDAVVETYLECCAAALGAEIEFGTLTPEEEAMAAELDERFASEEWLYQKGGLRQSGIKIHADVHLHEAALKVPGGLIRVIVRTHRGRIDDISISGDFTLLPALGLAAIEQAVRGLALRREELTARVRDVYRALGLQSPGVSPDDFAAAILRAVESMR
SIO_010081: TRD_RS00685
subclass of: SO_0000673
so part of: TRD_RS00685
location: complement(153163..154236)
location: region:153163-154236:-1
so has part: feature:153163-154236:-1:exon

WP_012641555.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:153163-154236:-1:exon

TRD_RS00690
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00690
old locus tag: trd_0143
so part of: sequence
location: complement(154253..154717)
location: region:154253-154717:-1
so has part: feature:154253-154717:-1:exon
subclass of: SO_0000010

position:154253:-1
position: 154253
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:154717:-1
position: 154717
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:154253-154717:-1:exon

TRD_RS00690
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00690
old locus tag: trd_0143
inference: COORDINATES: protein motif:HMM:NF013743.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycine cleavage system protein H
translation: MSFAETTRVYRGCVIPLDLLYDVERDVWVRREGELATLGMTDPAQTRAGKLVAIRFRRPGTIVERGRALATIESGKWVGPFPAPFRCELVETNQAAFERDILIANRDPYGEGWLVRVRPLAPEELAELVTGEEAFTRYRARIDALDLNCFRCAE
SIO_010081: TRD_RS00690
subclass of: SO_0000673
so part of: TRD_RS00690
location: complement(154253..154717)
location: region:154253-154717:-1
so has part: feature:154253-154717:-1:exon

WP_012641556.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:154253-154717:-1:exon

TRD_RS00695
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: gcvH
locus tag: TRD_RS00695
old locus tag: trd_0144
so part of: sequence
location: complement(154714..155151)
location: region:154714-155151:-1
so has part: feature:154714-155151:-1:exon
subclass of: SO_0000010

position:154714:-1
position: 154714
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:155151:-1
position: 155151
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:154714-155151:-1:exon

TRD_RS00695
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: gcvH
locus tag: TRD_RS00695
old locus tag: trd_0144
inference: COORDINATES: protein motif:HMM:NF002270.0
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycine cleavage system protein GcvH
translation: MAEVHGCSIPEDRYYWPEKHVWARPEPDGTVTIGITDVAQHLAKTIISVTPRGVGRKVQRGKSAGTLESGKWVGPVTSPISGEIVAVNDAAIADPKLLNQDPYGAGWFARLRPDDWENESKLLVTGPEAVEAYRKVLEQEGISCS
SIO_010081: TRD_RS00695
subclass of: SO_0000673
so part of: TRD_RS00695
location: complement(154714..155151)
location: region:154714-155151:-1
so has part: feature:154714-155151:-1:exon

WP_012641557.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:154714-155151:-1:exon

TRD_RS00700
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00700
old locus tag: trd_0145
so part of: sequence
location: complement(155144..155443)
location: region:155144-155443:-1
so has part: feature:155144-155443:-1:exon
subclass of: SO_0000010

position:155144:-1
position: 155144
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:155443:-1
position: 155443
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:155144-155443:-1:exon

TRD_RS00700
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00700
old locus tag: trd_0145
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSMRCPYCDFAGDRPTIHVHLAEAHADRLAFSWHERSGYAIATVRCPLCGASWDQPLRKARRDPGFLDEYAYEIRLVLFDLLLHHIRGEHETEGEARDG
SIO_010081: TRD_RS00700
subclass of: SO_0000673
so part of: TRD_RS00700
location: complement(155144..155443)
location: region:155144-155443:-1
so has part: feature:155144-155443:-1:exon

WP_012641558.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:155144-155443:-1:exon

TRD_RS00705
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00705
old locus tag: trd_0146
so part of: sequence
location: complement(155440..155913)
location: region:155440-155913:-1
so has part: feature:155440-155913:-1:exon
subclass of: SO_0000010

position:155440:-1
position: 155440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:155913:-1
position: 155913
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:155440-155913:-1:exon

TRD_RS00705
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00705
old locus tag: trd_0146
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MSAGCPDQLASAFAQRFRVLARALDRLDRLEGERAFVGWLDQLTEQPHVLQDASEALVLQALRAASDPMNLALLRHLSVEEATGLAELAAELPLERIALHVRLGELAQAGLVALELEREAARLTALGNALRDWLDTLIRCTLDQVGAWLELVRSTQS
SIO_010081: TRD_RS00705
subclass of: SO_0000673
so part of: TRD_RS00705
location: complement(155440..155913)
location: region:155440-155913:-1
so has part: feature:155440-155913:-1:exon

WP_012641559.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:155440-155913:-1:exon

TRD_RS00710
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00710
old locus tag: trd_0147
so part of: sequence
location: complement(155910..157946)
location: region:155910-157946:-1
so has part: feature:155910-157946:-1:exon
subclass of: SO_0000010

position:155910:-1
position: 155910
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:157946:-1
position: 157946
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:155910-157946:-1:exon

TRD_RS00710
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00710
old locus tag: trd_0147
inference: COORDINATES: protein motif:HMM:NF014774.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: heterodisulfide reductase-related iron-sulfur binding cluster
translation: MLSTPERIAFLLLALVSLLLTAHGVSRLVRAIGRGQGRPRWSLFVRRVVPVSLDILLQRPIFRARPWVSLLHAGIFFAFVFYGLVNILDILEGFTGFTTLHRGGIAGAYNLVADLLSVAALVGMIGLLFRRFGLRPFRFNERVLLLPSVRFGIARDSAIVGGFILLHVGSRWVGQAVRIAESRHSDWSQPTASLVARLFTGWEVETLALASHVTWWLALGLILAFLPYFPYSKHIHLFMAPLNLILREERPLGQLEPPVARDGQLGSERLEQLRWFQILDAYACIMCNRCQDVCPAHGTGRALSPAALEINKRYYLNRNLRAFADGTSSPPLLEIATSKEAVWACTTCAACVRICPVGNRPMLDLIDIRRALVNQGDPLDPNLQAALESLGRYGNSFGKPARQRARWAKELPFTIKDARKEPVEYLWFVGDFASFDPRMQENTKTVAWLFHTAGLDFGLLYEDERNAGNDVRRVGEEGLFELLVEQNLRAFEKAQFRAIVTTDPHSYNALKNEYAAFGFSVPVYHYTEVLAQLLEDGRLTVRQPLAAAVTYHDPCYLGRYNRITAAPRRILRALGAELREMPRHGENTYCCGAGGGQIWMASDGEERPSEQRIREAVQLGEDLRYFVVACPKDMAMYSDAVKTTGYEGRLVVTDIARLVASAVGFEEAPVFAATEERS
SIO_010081: TRD_RS00710
subclass of: SO_0000673
so part of: TRD_RS00710
location: complement(155910..157946)
location: region:155910-157946:-1
so has part: feature:155910-157946:-1:exon

WP_012641560.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:155910-157946:-1:exon

TRD_RS00715
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00715
old locus tag: trd_0148
so part of: sequence
location: complement(157951..158916)
location: region:157951-158916:-1
so has part: feature:157951-158916:-1:exon
subclass of: SO_0000010

position:157951:-1
position: 157951
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:158916:-1
position: 158916
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:157951-158916:-1:exon

TRD_RS00715
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00715
old locus tag: trd_0148
inference: COORDINATES: protein motif:HMM:NF013200.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: electron transfer flavoprotein subunit alpha/FixB family protein
translation: MAQRIAVLVEHLDGEPTDVTYELLGVARRMADEDGAMVDAVLLGSEVRQLSERLPADRVTILDHPSLRYLAPEAAARALAALLADAPPKLTLVPNTSLGMDIAAWVAARLGWPLVSYCRALESRDGQWIATAQLFGGKILADVALGDEPAIIGALAGAFSQDAASPGPPGTIEQVPAPAELEQLRSRVIALERPEAADVDITRAEKIVAVGRGIESKDNLELAEQLAQALGAVLAASRPLVDAGWLPRSRQVGKSGLKVKPKLYVALGISGAPEHLEGMKDAELIIAINKDPKAPIFTVADYGAVADLFEVAEALLERLEG
SIO_010081: TRD_RS00715
subclass of: SO_0000673
so part of: TRD_RS00715
location: complement(157951..158916)
location: region:157951-158916:-1
so has part: feature:157951-158916:-1:exon

WP_012641561.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:157951-158916:-1:exon

TRD_RS00720
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00720
old locus tag: trd_0149
so part of: sequence
location: complement(158932..159699)
location: region:158932-159699:-1
so has part: feature:158932-159699:-1:exon
subclass of: SO_0000010

position:158932:-1
position: 158932
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:159699:-1
position: 159699
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:158932-159699:-1:exon

TRD_RS00720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00720
old locus tag: trd_0149
inference: COORDINATES: protein motif:HMM:NF013200.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: electron transfer flavoprotein subunit beta
translation: MTIAVILEQVPDVVEELAIAPSGNELDRDTVTYVLNEYDDHALEEALLLAEASGDEVIAVGIDTTGELDQALYTALAKGAKRAIKLVGDFEETWLSTRATAEILAPILRDLAPRLVLTGVQAPDDLDGQLAPTLAARLGWPHASVVIGTEFSDGRLRARKELWGGMTLLLELEPPAILGIQAARQAPRYVPVSRVRQVMREATIEEIEVELPTQPSVAVERLRLPEEASQAELLTGSAAEIAERMIELLRARGLL
SIO_010081: TRD_RS00720
subclass of: SO_0000673
so part of: TRD_RS00720
location: complement(158932..159699)
location: region:158932-159699:-1
so has part: feature:158932-159699:-1:exon

WP_012641562.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:158932-159699:-1:exon

TRD_RS00725
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00725
old locus tag: trd_0150
so part of: sequence
location: complement(159696..160997)
location: region:159696-160997:-1
so has part: feature:159696-160997:-1:exon
subclass of: SO_0000010

position:159696:-1
position: 159696
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:160997:-1
position: 160997
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:159696-160997:-1:exon

TRD_RS00725
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00725
old locus tag: trd_0150
inference: COORDINATES: protein motif:HMM:NF014774.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: (Fe-S)-binding protein
translation: MDPSLEKVQEVWERETAIVEGVDISGPWNRMFGQRVIWDYTPELIEEIARLPSGESFAWCYQCGKCVPVCPVDVVGDYGPRKLYRRAQTGINLLDSPDLWLCTTCANCLRVCPKQVDMIQIMPAAREHAMLSGRVIPSELQEALENTAKYGNPLGQPARKREAWVKDAGVPVPILHQIQRPVEWLWWVECYPSYHPRGIDASIALARIFHALGLDFAILGREEKCAGDSQRLAGERGLFEMLAEENIRTLSKYEFQHIVVTDPHALNAFRKHYPKLGGQYDVWHYTTLLARELSRLQPLLVRPLPYRVTFHDPCYLGRHNGEYDAPRQLIQAIPGIEFVEMLRCRENSYCCGGGGGGMWLDSFAAGHQRRRLSEERVLEAVSTGADTLVVCCPYEVSRFEDAVKSTGNEGRLRVRDIAELLAEAMGMIGEATA
SIO_010081: TRD_RS00725
subclass of: SO_0000673
so part of: TRD_RS00725
location: complement(159696..160997)
location: region:159696-160997:-1
so has part: feature:159696-160997:-1:exon

WP_012641563.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:159696-160997:-1:exon

TRD_RS13410
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS13410
old locus tag: trd_0151
so part of: sequence
location: complement(161010..161810)
location: region:161010-161810:-1
so has part: feature:161010-161810:-1:exon
subclass of: SO_0000010

position:161010:-1
position: 161010
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:161810:-1
position: 161810
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:161010-161810:-1:exon

TRD_RS13410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS13410
old locus tag: trd_0151
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGQPLRPSHLIKPKTGPEDPELAETLREGLEQVSPDDVLAIARELAGRRQYLAPLVERIAREVERGELRGWEELTRAVTATARQAETLAQQAARAQACAALPLLLREEQPVEQRLDEFLARCSDLDRRLALELATGVLHLRAPARYWLWTRWLWDIEHGTGILPLLASSTRALEGRSVGAQYRQLRPLVAMGTELGRNSGLVAHDLADDPELGPFVTDAFLALAYSVYLYGITNWRLSREFNRLLPPLPQLARRLLGLGRARAVRS
SIO_010081: TRD_RS13410
subclass of: SO_0000673
so part of: TRD_RS13410
location: complement(161010..161810)
location: region:161010-161810:-1
so has part: feature:161010-161810:-1:exon

WP_012641564.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:161010-161810:-1:exon

TRD_RS00735
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00735
old locus tag: trd_0152
so part of: sequence
location: complement(161820..162062)
location: region:161820-162062:-1
so has part: feature:161820-162062:-1:exon
subclass of: SO_0000010

position:161820:-1
position: 161820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:162062:-1
position: 162062
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:161820-162062:-1:exon

TRD_RS00735
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00735
old locus tag: trd_0152
inference: COORDINATES: protein motif:HMM:NF022577.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2892 domain-containing protein
translation: MALPAKRNPFVSFMASGAGRLLRIVVGIVLILLGLLVVQGTWGWVLVVIGLVPLAAGVFDFCLLGPLFGVGFWGRDIRGR
SIO_010081: TRD_RS00735
subclass of: SO_0000673
so part of: TRD_RS00735
location: complement(161820..162062)
location: region:161820-162062:-1
so has part: feature:161820-162062:-1:exon

WP_012641565.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:161820-162062:-1:exon

TRD_RS00740
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00740
old locus tag: trd_0153
so part of: sequence
location: complement(162116..163183)
location: region:162116-163183:-1
so has part: feature:162116-163183:-1:exon
subclass of: SO_0000010

position:162116:-1
position: 162116
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:163183:-1
position: 163183
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:162116-163183:-1:exon

TRD_RS00740
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00740
old locus tag: trd_0153
inference: COORDINATES: protein motif:HMM:NF019604.2
GO function: GO:0016491 - oxidoreductase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: FAD-dependent oxidoreductase
translation: MQETTRPILVIGGGPGGLEAARTVAALGHPVLLVERRGRLGGTPDAERYAKLTHHFRDAEEAIGELVAAVTDHPLIEVLTRSEVTACEGEAGDFRVTVSTPTGSREARVSAIIVATGFQHFDPGRETQLYNYYSFPDVVTLSDMEAMLKAHQVVRPSNGQPPERVAFIQCVGSRDRQIGNEFCSKVCCGIASKQAIEIKEQLPDARVFIFYIDMRMYGYWENELYWPAQERYKVNYVKGIVSEILPKGDRLLIRGEDTTMGRPMEITVDLVVLSVGMEPSSGTRQMAKLLGIAQNKYGYIEAGGPSGLDPVATSRPGIYVVGAAARPADLDDTFATAGLAAARAVATARQALVGT
SIO_010081: TRD_RS00740
subclass of: SO_0000673
so part of: TRD_RS00740
location: complement(162116..163183)
location: region:162116-163183:-1
so has part: feature:162116-163183:-1:exon

WP_012641566.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:162116-163183:-1:exon

TRD_RS00745
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00745
old locus tag: trd_0154
so part of: sequence
location: complement(163194..164411)
location: region:163194-164411:-1
so has part: feature:163194-164411:-1:exon
subclass of: SO_0000010

position:163194:-1
position: 163194
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:164411:-1
position: 164411
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:163194-164411:-1:exon

TRD_RS00745
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00745
old locus tag: trd_0154
inference: COORDINATES: protein motif:HMM:NF014774.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: heterodisulfide reductase-related iron-sulfur binding cluster
translation: MSEYMLPLVEIREKKAQPVRPNPAEAPRPDLREELFELEARGELIVQRVPEPYVEVTTKYGRTKKVPIDHLWHHKSCGQCGHIPGYTTSILWLNRQFGIDYLDPTDQTSCTGWNYYASATSNAVAQLLVMCRNFAAAYETGYYPLIHCGTSYGHYKELREQLVHHKELRDQVRRVLDKLGKPLVVPEEIVHYSEWVHVMRQRIAERQVIDMRGITACVHPACHYYKIVAEDAIYDPDIYGGQRTATVTALLQALGITVADYSTWFDCCGFGFRHILVQRDFTRSFAVLRKIEVMKDEANPDMTVTHDTGCVTTLDKSQFAARAHQRRVGVPVLADSQVAALAMGAHPFRVLQLHWHSTDWRPLLEKLGIDWERYWTEFEEDLAAIERGEKPGLTWQDAEQPIVTR
SIO_010081: TRD_RS00745
subclass of: SO_0000673
so part of: TRD_RS00745
location: complement(163194..164411)
location: region:163194-164411:-1
so has part: feature:163194-164411:-1:exon

WP_012641567.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:163194-164411:-1:exon

TRD_RS00750
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00750
old locus tag: trd_0155
so part of: sequence
location: complement(164408..165112)
location: region:164408-165112:-1
so has part: feature:164408-165112:-1:exon
subclass of: SO_0000010

position:164408:-1
position: 164408
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:165112:-1
position: 165112
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:164408-165112:-1:exon

TRD_RS00750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00750
old locus tag: trd_0155
inference: COORDINATES: protein motif:HMM:NF024581.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 4Fe-4S dicluster domain-containing protein
translation: MSVATWSPTKSGQRYADVPEERKRELFEEVKSDPRYPDFLYGCYECGICVSACPSARFYDFSPRVIAQALAREDVERFYEILMEDIWNCAQCFSCVRCPRGNNPGGLVTLMREVAVRHGLERAQQALQGYSRVIYKIMLKGNQVSPDMLQPDFFPDWGPWVREFSRNMTAWRKAIPVDTLRNVTDAAWRTDDKTLRELYTIWFETGNMEVIREVDEGLYELLVEIMEEELEAVE
SIO_010081: TRD_RS00750
subclass of: SO_0000673
so part of: TRD_RS00750
location: complement(164408..165112)
location: region:164408-165112:-1
so has part: feature:164408-165112:-1:exon

WP_012641568.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:164408-165112:-1:exon

TRD_RS00755
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00755
old locus tag: trd_0156
so part of: sequence
location: complement(165115..165378)
location: region:165115-165378:-1
so has part: feature:165115-165378:-1:exon
subclass of: SO_0000010

position:165115:-1
position: 165115
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:165378:-1
position: 165378
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:165115-165378:-1:exon

TRD_RS00755
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00755
old locus tag: trd_0156
inference: COORDINATES: protein motif:HMM:NF024590.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: thioredoxin family protein
translation: MTRIRLFTHPICSGCAEALALVQRLAAEEPEIQVEVISLASAAGRAAAQEAGVVVVPTLLIDGERLTGVPTLEELRARVQHATRTGG
SIO_010081: TRD_RS00755
subclass of: SO_0000673
so part of: TRD_RS00755
location: complement(165115..165378)
location: region:165115-165378:-1
so has part: feature:165115-165378:-1:exon

WP_012641569.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:165115-165378:-1:exon

TRD_RS00760
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00760
old locus tag: trd_0157
so part of: sequence
location: complement(165375..165857)
location: region:165375-165857:-1
so has part: feature:165375-165857:-1:exon
subclass of: SO_0000010

position:165375:-1
position: 165375
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:165857:-1
position: 165857
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:165375-165857:-1:exon

TRD_RS00760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00760
old locus tag: trd_0157
inference: COORDINATES: protein motif:HMM:NF013743.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycine cleavage system protein H
translation: MRETAGYAIVHSCILPLDLYYRVESHQWVRVEADGSVRLGYTDVAQTVAGRILQVTFRPTGRHYARDATVAVVESAKWLGAYRTPIAGVLLETNTALLEDPELVNRSPYRRGWLVRLAPDDLAHDLSELLSGPAAVAAYDAFMTRRGLDDCVHCEGYELP
SIO_010081: TRD_RS00760
subclass of: SO_0000673
so part of: TRD_RS00760
location: complement(165375..165857)
location: region:165375-165857:-1
so has part: feature:165375-165857:-1:exon

WP_012641570.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:165375-165857:-1:exon

TRD_RS00765
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00765
old locus tag: trd_0158
so part of: sequence
location: complement(165857..166240)
location: region:165857-166240:-1
so has part: feature:165857-166240:-1:exon
subclass of: SO_0000010

position:166240:-1
position: 166240
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:165857-166240:-1:exon

TRD_RS00765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00765
old locus tag: trd_0158
inference: COORDINATES: protein motif:HMM:NF014672.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DsrE family protein
translation: MSEETKKILYVQTHGVDTPERSATPFFLAAAAAAMEIEAAIYFTMNGPTLLKKGVPETLVVPKAGGGGAKLKHFIDQALDLGVKLYVCQPSLDLHGLTMDDLIEGVQMIGGAAFNLMALEADAVVAF
SIO_010081: TRD_RS00765
subclass of: SO_0000673
so part of: TRD_RS00765
location: complement(165857..166240)
location: region:165857-166240:-1
so has part: feature:165857-166240:-1:exon

WP_012641571.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:165857-166240:-1:exon

TRD_RS00770
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00770
old locus tag: trd_0159
so part of: sequence
location: complement(166262..166783)
location: region:166262-166783:-1
so has part: feature:166262-166783:-1:exon
subclass of: SO_0000010

position:166262:-1
position: 166262
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:166783:-1
position: 166783
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:166262-166783:-1:exon

TRD_RS00770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00770
old locus tag: trd_0159
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012537444.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DsrE/DsrF/DrsH-like family protein
translation: MSRRDPEAPRRLAIIASKGTLDFAYPPFILGSTAAAMGWEVAIFFTFYGLPLLLRNYDPKVSPLGNPAMPLKMPFGPPALRQISWPIPALVEALPGFSHLATTLMQQTFKEKGVPSLLELRQLCIDAGVNLIACQMTMDVFGFKKEDFIPECTVGGAATFLEFAADADVSLFI
SIO_010081: TRD_RS00770
subclass of: SO_0000673
so part of: TRD_RS00770
location: complement(166262..166783)
location: region:166262-166783:-1
so has part: feature:166262-166783:-1:exon

WP_012641572.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:166262-166783:-1:exon

TRD_RS00775
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00775
old locus tag: trd_0160
so part of: sequence
location: complement(166802..167044)
location: region:166802-167044:-1
so has part: feature:166802-167044:-1:exon
subclass of: SO_0000010

position:166802:-1
position: 166802
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:167044:-1
position: 167044
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:166802-167044:-1:exon

TRD_RS00775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00775
old locus tag: trd_0160
inference: COORDINATES: protein motif:HMM:NF013379.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: sulfurtransferase TusA family protein
translation: MTDVLQPDRVLDCSGLLCPLPVIRTSKAIKEIAIGQVLKVIATDPGAPADMEAWARQTGNELIDAHEENGKYVFFFRRVR
SIO_010081: TRD_RS00775
subclass of: SO_0000673
so part of: TRD_RS00775
location: complement(166802..167044)
location: region:166802-167044:-1
so has part: feature:166802-167044:-1:exon

WP_012641573.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:166802-167044:-1:exon

TRD_RS00780
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00780
old locus tag: trd_0162
so part of: sequence
location: 167677..168336
location: region:167677-168336:1
so has part: feature:167677-168336:1:exon
subclass of: SO_0000010

position:167677:1
position: 167677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:168336:1
position: 168336
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:167677-168336:1:exon

TRD_RS00780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00780
old locus tag: trd_0162
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: haloacid dehalogenase
translation: MDATAIVRITERVLARLDLLNSARERALAETRQITRLSANAVRAVHRGEFAEAGALLEEARRIKEALTAHLADYPAIYWSGYVQDAHKEYAEASLTLALVAGRPIPSPETLQVEDAVYLNALGEACGELRRHILDLIRAGDLARAETVLAVMDEIYGVLVQVDYPDAVTNGLRRTTDMVRGVLERTRGDLTLAVEQQKLSDALAQARRAVGLGEPGQPS
SIO_010081: TRD_RS00780
subclass of: SO_0000673
so part of: TRD_RS00780
location: 167677..168336
location: region:167677-168336:1
so has part: feature:167677-168336:1:exon

WP_012641575.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:167677-168336:1:exon

TRD_RS00785
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00785
old locus tag: trd_0163
so part of: sequence
location: complement(168348..168770)
location: region:168348-168770:-1
so has part: feature:168348-168770:-1:exon
subclass of: SO_0000010

position:168348:-1
position: 168348
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:168770:-1
position: 168770
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:168348-168770:-1:exon

TRD_RS00785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00785
old locus tag: trd_0163
inference: COORDINATES: protein motif:HMM:NF012436.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ferritin-like domain-containing protein
translation: MDKKTLIDGLNQDLAGEFQAIIMYIHYAAAATGVDRIELAEFFQKEIQDELRHALFLANKITALGGEPVDEPLPVPRANSNREMIERVLEAEERTIKSYVERMKQAEEFGDYGLANDLQEIISDETRHKEECEKLLRGVA
SIO_010081: TRD_RS00785
subclass of: SO_0000673
so part of: TRD_RS00785
location: complement(168348..168770)
location: region:168348-168770:-1
so has part: feature:168348-168770:-1:exon

WP_012641576.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:168348-168770:-1:exon

TRD_RS00790
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: gcvPB
locus tag: TRD_RS00790
old locus tag: trd_0164
so part of: sequence
location: complement(168824..170290)
location: region:168824-170290:-1
so has part: feature:168824-170290:-1:exon
subclass of: SO_0000010

position:168824:-1
position: 168824
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:170290:-1
position: 170290
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:168824-170290:-1:exon

TRD_RS00790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: gcvPB
locus tag: TRD_RS00790
old locus tag: trd_0164
EC number: 1.4.4.2
inference: COORDINATES: protein motif:HMM:NF003346.0
GO function: GO:0004375 - glycine dehydrogenase (decarboxylating) activity [Evidence IEA]
GO process: GO:0006546 - glycine catabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: aminomethyl-transferring glycine dehydrogenase subunit GcvPB
translation: MRVEPLIFELSKPGRTGTSVPDLDVPEAPLPVEHVRDDLPLPEVSEIDVVRHFTRLSQLNHAVDIDFYPLGSCTMKYNPKINELVARFPGFAHLHPLQDPRTVQGILRLMYELQGFLAEIAGFDAVSLQPAAGAHGELTGILIARAYFDARGEHERRTVIIPDSAHGTNPATAAMAGFRVVEVKSDARGNVDIEQLRQLVGPDTAAIMITNPNTLGLWDENITEIVDLIHSVGGLVYNDGANFNALLGIARPGDFGVDIMHFNLHKTFSTPHGGGGPGSGPVGVKAHLAEFLPGPIVVRRPGEDPEYTWHWPERSIGKIHSFHGNVGMHIRAYAYIRMHGGSGLRRVSEDAVLAANYLLARLRDVYEVPYDRTCMHEFVLSAVRQKRHGVRAMDIAKRLLDFGLHPPTVAFPLIVQEALMIEPTETESLETLDRFVAAMRQIAEEVERDPEFVRQAPHQTFYKRLDEVRANRELDLRWQPERATAATP
SIO_010081: TRD_RS00790
subclass of: SO_0000673
so part of: TRD_RS00790
location: complement(168824..170290)
location: region:168824-170290:-1
so has part: feature:168824-170290:-1:exon

WP_012641577.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:168824-170290:-1:exon

TRD_RS00795
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00795
old locus tag: trd_0165
so part of: sequence
location: 170523..171530
location: region:170523-171530:1
so has part: feature:170523-171530:1:exon
subclass of: SO_0000010

position:170523:1
position: 170523
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:171530:1
position: 171530
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:170523-171530:1:exon

TRD_RS00795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00795
old locus tag: trd_0165
inference: COORDINATES: protein motif:HMM:NF018798.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF1385 domain-containing protein
translation: MADERTIYGGQAVLEGVMMRGVRHLATAVRLPDGRIAVWELPLASERWAARLRHVPLLRGVLALWETLVLGVRALVFSAHVAVRYDPELEQTKPGTSASSWGGLLWGTVALSLALSVGLFFLLPLGVASLLDRWVGSGWTIHALEGTIRLGILLGYLAVIGRTPDIARVFGYHGAEHKTIHAWEHGDPLTVEGARPHSLLHPRCGTGFLLIVVALSIVVFAFLGWPSLVWRVLSRVALIPLIAALAYEIIRLAARWFHLRPVRVLLAPSLALQRLTTREPDDAMLETAIVALHRVLVAEGHAVPALAVSAPVIVVDEAGQEQAVFAPSGKREERA
SIO_010081: TRD_RS00795
subclass of: SO_0000673
so part of: TRD_RS00795
location: 170523..171530
location: region:170523-171530:1
so has part: feature:170523-171530:1:exon

WP_012641578.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:170523-171530:1:exon

TRD_RS00800
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: argH
locus tag: TRD_RS00800
old locus tag: trd_0166
so part of: sequence
location: 171527..172984
location: region:171527-172984:1
so has part: feature:171527-172984:1:exon
subclass of: SO_0000010

position:171527:1
position: 171527
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:172984:1
position: 172984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:171527-172984:1:exon

TRD_RS00800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: argH
locus tag: TRD_RS00800
old locus tag: trd_0166
EC number: 4.3.2.1
inference: COORDINATES: protein motif:HMM:TIGR00838.1
GO function: GO:0004056 - argininosuccinate lyase activity [Evidence IEA]
GO process: GO:0042450 - arginine biosynthetic process via ornithine [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: argininosuccinate lyase
translation: MTTPAKLWGGRFQKPTHELVDQLNASLPFDRRLARHDILGSLAHVTMLAQRGIIPREDAQTIARGLRTILREIEEERFAFRLADEDIHLSVERRLHELIGPVAGRLHTARSRNDQVALDFRLWMREALLEIAEGIVETSGALLDLAELHRDVVMPGYTHLQRAQPVLFAHHVHAYVVMLTRDLERLRQLYQRVNRSPLGSGALAGVPYPIDRHVVAALLAMDGVLENSIDAVSDRDFALEFLADLAILMAHLSRLAEELVLWSSSEFGFIEFDDAFATGSSIMPQKKNPDVAELLRGKSGRVFGHLIGLLTVVKGLPLAYNKDLQEDKEGVFDAYDTVALLLRVLPPMLRTLRINRERLEAAAGQNFTLATDIADALVRAGVPFREAHEAVGRLVAFCLASGKSLDQLTADELARFHSKLAEITLPRTVWDAVRAREHLGGTGPEHVARAIAASRADSAGARQWLESERQRIEHAFARLLSEDVP
SIO_010081: TRD_RS00800
subclass of: SO_0000673
so part of: TRD_RS00800
location: 171527..172984
location: region:171527-172984:1
so has part: feature:171527-172984:1:exon

WP_012641579.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:171527-172984:1:exon

TRD_RS00805
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00805
old locus tag: trd_0167
so part of: sequence
location: 172981..173475
location: region:172981-173475:1
so has part: feature:172981-173475:1:exon
subclass of: SO_0000010

position:172981:1
position: 172981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:173475:1
position: 173475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:172981-173475:1:exon

TRD_RS00805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00805
old locus tag: trd_0167
EC number: 2.3.1.-
inference: COORDINATES: protein motif:HMM:NF025054.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GNAT family N-acetyltransferase
translation: MTGIESETRSAQPRAIRVEPVRTPEELEIVYQIRREVFDQEQHLTTWVHDYPEDGAGLNVLAWIDGEAVGTGRVTLWGDEAQIAWVAVRKPYRGQGVGRAIMERLIRWAEEQGARTVTLNAQTHALEFYRKLGFRPIGRPFSMAHIEHQFMERELRPVRTKGGQ
SIO_010081: TRD_RS00805
subclass of: SO_0000673
so part of: TRD_RS00805
location: 172981..173475
location: region:172981-173475:1
so has part: feature:172981-173475:1:exon

WP_012641580.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:172981-173475:1:exon

TRD_RS00810
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: lipA
locus tag: TRD_RS00810
old locus tag: trd_0168
so part of: sequence
location: 173475..174386
location: region:173475-174386:1
so has part: feature:173475-174386:1:exon
subclass of: SO_0000010

position:174386:1
position: 174386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:173475-174386:1:exon

TRD_RS00810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: lipA
locus tag: TRD_RS00810
old locus tag: trd_0168
EC number: 2.8.1.8
inference: COORDINATES: protein motif:HMM:TIGR00510.1
GO function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0016992 - lipoate synthase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO process: GO:0009107 - lipoate biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: lipoyl synthase
translation: MPSVRQPILLQKKPDWFRVRREHGPNYLELRRLVLEEGLHTVCQEARCPNIYECWNQRTATFMILGDRCTRACRFCNVRWGRSGTVDWEEPRRVAEAVERLGLDFAVITSVNRDDLPDGGAAVFAATIREIRSRIPSCGIEVLIPDFLGNWYALRTVVEARPEVIAHNIETVPRLFRVIQPWDDYGRSLELFRRVQAMDDAIALKSGLIVGMGETWDELLAVMRDLREVGVEILTIGQYLPPTPRHFPLHRYYTLEEFEELRRIGEEELGYVYVESGPLVRSSYHAKEQYERYRARRLEVRRG
SIO_010081: TRD_RS00810
subclass of: SO_0000673
so part of: TRD_RS00810
location: 173475..174386
location: region:173475-174386:1
so has part: feature:173475-174386:1:exon

WP_012641581.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:173475-174386:1:exon

TRD_RS00815
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: lipB
locus tag: TRD_RS00815
old locus tag: trd_0170
so part of: sequence
location: 174392..175135
location: region:174392-175135:1
so has part: feature:174392-175135:1:exon
subclass of: SO_0000010

position:174392:1
position: 174392
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:175135:1
position: 175135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:174392-175135:1:exon

TRD_RS00815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: lipB
locus tag: TRD_RS00815
old locus tag: trd_0170
EC number: 2.3.1.181
inference: COORDINATES: protein motif:HMM:NF010925.0
GO function: GO:0033819 - lipoyl(octanoyl) transferase activity [Evidence IEA]
GO process: GO:0009249 - protein lipoylation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: lipoyl(octanoyl) transferase LipB
translation: MPDDPVVALQLGRVDYLAAWELQRQLAAARRAGAIPDTLLLLEHPPTFTTGRRGGTHHLRLSVDALAARGVPYYVTDRGGDVTYHGPGQLVVYVILRLGEGQRRVRRFVESLEATVLDVLASYGITGELDPRHPGVWIGRNKIAAIGIAIHHGVTYHGIALNVTTDLEPFDWIVPCGIPDRGVTSLAELVAGPVELADVQARWLAAFAERFGRTVELDPEPVRSLDDVLLRLTSRWAGATRSSAIVR
SIO_010081: TRD_RS00815
subclass of: SO_0000673
so part of: TRD_RS00815
location: 174392..175135
location: region:174392-175135:1
so has part: feature:174392-175135:1:exon

WP_012641582.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:174392-175135:1:exon

TRD_RS00820
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00820
old locus tag: trd_0169
so part of: sequence
location: complement(175086..177932)
location: region:175086-177932:-1
so has part: feature:175086-177932:-1:exon
subclass of: SO_0000010

position:175086:-1
position: 175086
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:177932:-1
position: 177932
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:175086-177932:-1:exon

TRD_RS00820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00820
old locus tag: trd_0169
inference: COORDINATES: protein motif:HMM:NF012492.2
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DEAD/DEAH box helicase
translation: MTGFMDATEAVSLPESIEQFSVFYPFRFDPFQLEAMLAFLEGKSVMVAAPTGTGKTVVAEFGVYETFRRGARVMYTTPIKALSNQKFRDLRAIYGDNVGLLTGDVTENPHAPIVVMTTEVLRNMLLQTPWELDSVQCVIFDEIHYLADPERGTTWEESIILCPEHIQLICLSATVSNAQEIADWISRTHRPIQLIVHTERAVPLALWYFYDRKLRLVIDHHGRQVADYSNVGGEIRALIGRGGLTAERRREAEEAEPPPWEIIQALAAEDMLPAIYFLFNRRDCEDYATRLAMMRVNLVRDRATRQRIAHVIESFLASLRPEDRELSQVQTIVQLAAKGIGFHHAGLLPILKQLVEVLFSQGLMKVVFATDTLALGVNMPARTVVIGRMTKWDGRRRRLLTPNEFQQMAGRAGRRGMDERGNVVVPYSPWISFKEVLAVATGELEPVRSAFTIRYNTVLNLWDPPRGDRVRQLFQESLAQYQAAQRVRLLEEEILQVGHELETVPRGCLLGLDGDELLYDYRNIVAQLNHAKSQERHLEHDLAQLEADLDDRPWAVPSRPVLRRLIREMAPGTPLHTRERGWVLFLNRLPYGGIALVLTREGSAELLTEYRQIDYVPHGIEPVPIPEALTLLAQPVSDVRGIVSTEAFEEIWRAFAARPLPDLDAMLLEHRRQVEARLAPERRRIEERLQTIQQTLHELTQQRFRHPCHACQRRKEHQRNLQRIARLEQERAELEAQLGREIAAEERRVRELLRGIRNVLEHFGYLHRGYPTSKADTLADVFDTNGLIICEMLDRDFFKGLEPADVAEVFSWFAFDRETRFANHFTLPTKLVLLRRRLESLEQEVFEVERRNGLALSTGHHEGFYGAMRAWCNGATMAEITELIELSEGDLVLTFNKSLDLMRQVREMLEKLYPDHPLRWSIATAEALARRDIIEQSLMIGLLPPIGT
SIO_010081: TRD_RS00820
subclass of: SO_0000673
so part of: TRD_RS00820
location: complement(175086..177932)
location: region:175086-177932:-1
so has part: feature:175086-177932:-1:exon

WP_012641583.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:175086-177932:-1:exon

TRD_RS00825
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00825
old locus tag: trd_0171
so part of: sequence
location: 178030..179187
location: region:178030-179187:1
so has part: feature:178030-179187:1:exon
subclass of: SO_0000010

position:178030:1
position: 178030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:179187:1
position: 179187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:178030-179187:1:exon

TRD_RS00825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00825
old locus tag: trd_0171
inference: COORDINATES: protein motif:HMM:NF024831.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycosyltransferase family 1 protein
translation: MRVGLLASLLSRQAGYRRAGVSRYIEALLQYLPTVATDLELVATVPRTVWGLAHQDFAGIEWRLTRWPTERPVVRIAWEQLWASRVLRDCAVVHGPVNVLPLALDRPSVVTVHDVAFLHFPEHYPPAKRWYLRVMTGLSVRRAHRVIAVSEQTRRDVIRAYGIEPGRVVVVPNGIDAGWQRVRDEELAHWRAERGLPEHFLLFVGTIQPRKNVTTLIDALAKLDAAIDWPLYIVGAPGWRETPVYRRVQERGLAQRVVFVGYVSPAELRYWYSAATLFVYPSLYEGFGLPVLEAMACGTPVITSDRSALPEVAGDAAWLVDPTDPAALATAIATLARDPERRIALARAGFARAQAFSWERTARETAAVYRALGVGLLDERGGATA
SIO_010081: TRD_RS00825
subclass of: SO_0000673
so part of: TRD_RS00825
location: 178030..179187
location: region:178030-179187:1
so has part: feature:178030-179187:1:exon

WP_012641584.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:178030-179187:1:exon

TRD_RS00830
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: thiL
locus tag: TRD_RS00830
old locus tag: trd_0172
so part of: sequence
location: 179184..180209
location: region:179184-180209:1
so has part: feature:179184-180209:1:exon
subclass of: SO_0000010

position:179184:1
position: 179184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:180209:1
position: 180209
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:179184-180209:1:exon

TRD_RS00830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: thiL
locus tag: TRD_RS00830
old locus tag: trd_0172
EC number: 2.7.4.16
inference: COORDINATES: protein motif:HMM:TIGR01379.1
GO function: GO:0009030 - thiamine-phosphate kinase activity [Evidence IEA]
GO process: GO:0009228 - thiamine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: thiamine-phosphate kinase
translation: MTGAGRPLREVGEEELIEQIARLVGDRSNRVSIGIGDDAAAWRPRAGHELVITTDTLIERVHFRLEWTDWEALGHKSLAVNLSDIAAMGAIPRLAVVDLAVRGTERDRDIADFYRGVQALARRFGVAIVGGDTTRSPLGVAVSITVIGESPRDGHRLLRRDAGRPGDLIGVTGPIGLAAAGLRVLERGLKTLDGNPVMQEHYHRPQPRVREGLLLRRCGVRAAMDISDGLLGDLQKLCRASGVAAIVDLERVPVPNAIKWAFPDWEEVALRGGDDYELLFAAPPAVFARVARAFARAGLLPPWKIGQLVEAGSAGPIVELRDVTGRCRPADARGFDHFRTG
SIO_010081: TRD_RS00830
subclass of: SO_0000673
so part of: TRD_RS00830
location: 179184..180209
location: region:179184-180209:1
so has part: feature:179184-180209:1:exon

WP_012641585.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:179184-180209:1:exon

TRD_RS00835
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00835
old locus tag: trd_0173
so part of: sequence
location: 180266..181693
location: region:180266-181693:1
so has part: feature:180266-181693:1:exon
subclass of: SO_0000010

position:180266:1
position: 180266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:181693:1
position: 181693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:180266-181693:1:exon

TRD_RS00835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00835
old locus tag: trd_0173
EC number: 3.5.1.4
inference: COORDINATES: protein motif:HMM:NF004815.0
GO function: GO:0003824 - catalytic activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: amidase
translation: MDSARSELCFLSATELLDHYRRRALSPVEVVDAVLTQIERLDPHLHAFLTVTAEEARRQALEAEYAYAHGEHRPLLGVPVSIKDVTPVAGVRWTSGSLLWKDRVATEDAPVVERLRAAGAIILGKTNTPELGWKGDSGNRLIGPTSNPWKLDRTAGGSSGGAAAAVAAGMGPLAQGTDGAGSIRIPASFCGIVGFKPSFGRVPYYPPSAVELLAHVGPMTRTVADAALMLSVMAGPDPRDRHSLPLECSDGEALERDLAGARVAWLGRVGDVPVDPEVAAIARRAVAVFEDLGCSVEELVEPLEDPYPVLDILWSVAMAAVHRDDLDAVRDLLDPGRLTVIEHGLRWRGVDVGWALAERNRYVDRLRQRLERFDFVVSPTTPVTAFAAGADHPGQIAGYPTTYLSWTPFTYPFNISGQPAISVPCGWTQEGLPVGLQIVGRWRADASVLRAAAAFERARPWSHQRPPLASGGETG
SIO_010081: TRD_RS00835
subclass of: SO_0000673
so part of: TRD_RS00835
location: 180266..181693
location: region:180266-181693:1
so has part: feature:180266-181693:1:exon

WP_012641586.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:180266-181693:1:exon

TRD_RS00840
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: tsaE
locus tag: TRD_RS00840
old locus tag: trd_0174
so part of: sequence
location: 181690..182229
location: region:181690-182229:1
so has part: feature:181690-182229:1:exon
subclass of: SO_0000010

position:181690:1
position: 181690
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:182229:1
position: 182229
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:181690-182229:1:exon

TRD_RS00840
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: tsaE
locus tag: TRD_RS00840
old locus tag: trd_0174
inference: COORDINATES: protein motif:HMM:TIGR00150.1
GO component: GO:0005737 - cytoplasm [Evidence IEA]
GO function: GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO process: GO:0006400 - tRNA modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE
translation: MSTRVPALDLVSHSPDQTRQIAATLARHVRGGDVLFLQGPLGAGKTTFVQGLARGLGIREYVQSPTFILVMEHRGTLPDGQPVRLYHVDLYRLEEPGELATFGLEDCLSDPAGIVVIEWADRLPPNWVEEYLVIRFEPLAESKRRLAFYPVGARAQAIIETLRKEVSGGAKRSTAPGTR
SIO_010081: TRD_RS00840
subclass of: SO_0000673
so part of: TRD_RS00840
location: 181690..182229
location: region:181690-182229:1
so has part: feature:181690-182229:1:exon

WP_012641587.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:181690-182229:1:exon

TRD_RS00845
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: tsaB
locus tag: TRD_RS00845
old locus tag: trd_0175
so part of: sequence
location: 182192..182920
location: region:182192-182920:1
so has part: feature:182192-182920:1:exon
subclass of: SO_0000010

position:182192:1
position: 182192
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:182920:1
position: 182920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:182192-182920:1:exon

TRD_RS00845
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: tsaB
locus tag: TRD_RS00845
old locus tag: trd_0175
EC number: 2.3.1.234
inference: COORDINATES: protein motif:HMM:TIGR03725.1
GO function: GO:0003725 - double-stranded RNA binding [Evidence IEA]
GO process: GO:0006400 - tRNA modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB
translation: MERSDQLLLALDSGGEQVAIALYDGRVVGELLYDAGREHTATVLPRIRQLLAENRRTIRDVAAVAVTTGPGSFNGLRVGMSIAKALCYALDVPLIGVLTLDALAYPHTALPYPIRAFVAAGRGRVVYADYRRQGEIWVRDSSLRSVRLHEVTDGLLGRTVLTGHLAPEEEALVRSHPLVILPAPALRQLRPAWVAELAFRRWQAGESDPVAALEPIYVHGGGAEAIPSVQLPMSYDVRPARE
SIO_010081: TRD_RS00845
subclass of: SO_0000673
so part of: TRD_RS00845
location: 182192..182920
location: region:182192-182920:1
so has part: feature:182192-182920:1:exon

WP_012641588.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:182192-182920:1:exon

TRD_RS00850
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: rimI
locus tag: TRD_RS00850
old locus tag: trd_0176
so part of: sequence
location: 182925..183608
location: region:182925-183608:1
so has part: feature:182925-183608:1:exon
subclass of: SO_0000010

position:182925:1
position: 182925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:183608:1
position: 183608
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:182925-183608:1:exon

TRD_RS00850
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: rimI
locus tag: TRD_RS00850
old locus tag: trd_0176
EC number: 2.3.1.266
inference: COORDINATES: protein motif:HMM:NF012792.2
GO function: GO:0008999 - peptide-alanine-alpha-N-acetyltransferase activity [Evidence IEA]
GO process: GO:0036211 - protein modification process [Evidence IEA]; GO:0042254 - ribosome biogenesis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribosomal protein S18-alanine N-acetyltransferase
translation: MEERTQQSSADPNSTVRRYVLSPMRSSDVPEVSQLERRCFSNPWPESAYYRELREPERNYYVVLRWETARSEEEPELVGATGTLARLLRAARPARTSAHPLVGFAGMWVIYGEAHVTTIGVAPEHRGLGLGEVLFLTLISEAIRRGAEFVTLEVRVSNVTAQSLYAKYGFTRRGVRPRYYSDNLEDAYIMTSPPLRDPTYRQELVALRDRLLERLAAEGIEIVEEAA
SIO_010081: TRD_RS00850
subclass of: SO_0000673
so part of: TRD_RS00850
location: 182925..183608
location: region:182925-183608:1
so has part: feature:182925-183608:1:exon

WP_226980703.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:182925-183608:1:exon

TRD_RS00855
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: tsaD
locus tag: TRD_RS00855
old locus tag: trd_0177
so part of: sequence
location: 183605..184702
location: region:183605-184702:1
so has part: feature:183605-184702:1:exon
subclass of: SO_0000010

position:183605:1
position: 183605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:184702:1
position: 184702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:183605-184702:1:exon

TRD_RS00855
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: tsaD
locus tag: TRD_RS00855
old locus tag: trd_0177
EC number: 2.3.1.234
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012641590.1
GO process: GO:0006400 - tRNA modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD
translation: MIILGIETSCDETAAAVVRDGRFVLSNIIRSQVDLHQRYGGVVPELASRRHVTSIVPVLDLALEQAGIGPSAIDAIAVTEGPGLAGSLLVGINVAKTLAFVWEKPLIPVNHLEGHIYANWLTLPGQDEVPEPTFPLVCLIVSGGHTELVLMRGHGDYVLLGRTLDDAAGEAFDKAARLLGLGFPGGPAIQKAAEQGRPGRFSLPRAWLGESYDFSFSGLKTALLRVLEQYQRRPARRVAAGQPFPEYVAPEYGPSVPIADLAAEFQAAVVEVLAEKTARAAREFGATMVLLAGGVAANAALRQRLREISPVPVRYPPPILCTDNAAMIAGAAYYLAQRGVRADLDLDVHAHLPLVTRTLLRAGEA
SIO_010081: TRD_RS00855
subclass of: SO_0000673
so part of: TRD_RS00855
location: 183605..184702
location: region:183605-184702:1
so has part: feature:183605-184702:1:exon

WP_012641590.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:183605-184702:1:exon

TRD_RS00860
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00860
old locus tag: trd_0178
so part of: sequence
location: 184715..185503
location: region:184715-185503:1
so has part: feature:184715-185503:1:exon
subclass of: SO_0000010

position:184715:1
position: 184715
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:185503:1
position: 185503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:184715-185503:1:exon

TRD_RS00860
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00860
old locus tag: trd_0178
EC number: 3.1.3.-
inference: COORDINATES: protein motif:HMM:NF012673.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: inositol monophosphatase family protein
translation: MATVRQVAVAAALSAGRLLRERLGRVREIRYKGAVNLVTEVDIASERLIVETIQAAFPEHAFFTEEGTGSASLDAPALWVIDPLDGTTNYAHGYPMFCVSIAFLCEGEPEFAVVYQPVLDELFIAERGVGAFLNGERLRVSQHADLHSALLATGFPYDRERRREALAAFARFTLTARAVRRDGSAALNLAYVAAGRFDGFWEQELSPWDTAAGTLLVTEAGGRVTDYDGQPYRLTQGTCVASNGLIHDAMLDLIRRDDRGGA
SIO_010081: TRD_RS00860
subclass of: SO_0000673
so part of: TRD_RS00860
location: 184715..185503
location: region:184715-185503:1
so has part: feature:184715-185503:1:exon

WP_041435862.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:184715-185503:1:exon

TRD_RS00865
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00865
old locus tag: trd_0179
so part of: sequence
location: 185500..186459
location: region:185500-186459:1
so has part: feature:185500-186459:1:exon
subclass of: SO_0000010

position:185500:1
position: 185500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:186459:1
position: 186459
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:185500-186459:1:exon

TRD_RS00865
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00865
old locus tag: trd_0179
inference: COORDINATES: protein motif:HMM:NF013046.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: histone deacetylase
translation: MTTEPTVLITSRRFLEHETGDHPERPARLEAILQLLERTGRLDNRPVIEPDPADEETIALIHDRAYIVELREFAARGGGWLDADTIVSPRSFEVARLAVGAVVQAVESVLSGQARRVFALIRPPGHHAEPERGMGFCLFNNIAVAAQYALERYGLRRIAIIDWDVHHGNGTQAAFYRTDRVFFVSLHQWPLYPGTGRAEEIGEGPGRGYTLNIPLAPGSDDQVYLAAFANEIEPRLAAYRPELVMVSAGYDAHYADPLAAMAVTEHGFAAMASQVRAIAEVWCDGRLVLALEGGYNLSALASSVAATLDALDTDGRAER
SIO_010081: TRD_RS00865
subclass of: SO_0000673
so part of: TRD_RS00865
location: 185500..186459
location: region:185500-186459:1
so has part: feature:185500-186459:1:exon

WP_012641592.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:185500-186459:1:exon

TRD_RS00870
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: hisH
locus tag: TRD_RS00870
old locus tag: trd_0180
so part of: sequence
location: 186474..187118
location: region:186474-187118:1
so has part: feature:186474-187118:1:exon
subclass of: SO_0000010

position:186474:1
position: 186474
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:187118:1
position: 187118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:186474-187118:1:exon

TRD_RS00870
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: hisH
locus tag: TRD_RS00870
old locus tag: trd_0180
EC number: 4.3.2.10
inference: COORDINATES: protein motif:HMM:TIGR01855.1
GO function: GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]; GO:0000107 - imidazoleglycerol-phosphate synthase activity [Evidence IEA]
GO process: GO:0000105 - histidine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: imidazole glycerol phosphate synthase subunit HisH
translation: MVIVVVDYGAGNLASVVNALERIGAPVIVSRHPAPLERADGVIVPGVGAAADTMRHLEELGLVPALRAAIERGIPFLGICMGLQVLLEVSYEGGEHRCLGIVPGVVRRLPEGITVPHMGWNEVWLRSSHPLFAGIPDGTDFYFVHSFYAEPSDSSWILGETDYGVRFASVLARDNVMATQFHPEKSGFWGLRMLANFVDLVERTRGGLPLEAPV
SIO_010081: TRD_RS00870
subclass of: SO_0000673
so part of: TRD_RS00870
location: 186474..187118
location: region:186474-187118:1
so has part: feature:186474-187118:1:exon

WP_012641593.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:186474-187118:1:exon

TRD_RS00875
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: hisA
locus tag: TRD_RS00875
old locus tag: trd_0181
so part of: sequence
location: 187115..187849
location: region:187115-187849:1
so has part: feature:187115-187849:1:exon
subclass of: SO_0000010

position:187115:1
position: 187115
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:187849:1
position: 187849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:187115-187849:1:exon

TRD_RS00875
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: hisA
locus tag: TRD_RS00875
old locus tag: trd_0181
EC number: 5.3.1.16
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012641594.1
GO function: GO:0003949 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase activity [Evidence IEA]
GO process: GO:0000105 - histidine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase
translation: MIVIPAIDLREGRCVRLFRGDFARATVYSDDPIEMAQRWASAGARWLHVVDLDGARLGQPVQHELIERVIRAVPDVAVQVGGGVRTLDAVERLLVGGAARVVIGTAALERPDMLREALARFGVERVVVAVDSRDGWVATHGWETVQAIRVEEVVHRVVLLGVRRVLATDVTRDGTLTRPNLELMGRLAALGVTVIASGGVGSRSDLEALARVPGVEAAIVGRALYEGRVRFERPEDWVIGAEAA
SIO_010081: TRD_RS00875
subclass of: SO_0000673
so part of: TRD_RS00875
location: 187115..187849
location: region:187115-187849:1
so has part: feature:187115-187849:1:exon

WP_012641594.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:187115-187849:1:exon

TRD_RS00880
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00880
old locus tag: trd_0182
so part of: sequence
location: 187849..188964
location: region:187849-188964:1
so has part: feature:187849-188964:1:exon
subclass of: SO_0000010

position:188964:1
position: 188964
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:187849-188964:1:exon

TRD_RS00880
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00880
old locus tag: trd_0182
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MERRPDQPDFIQQVREEERRRREEARQQAMQSQVDELRHRVRELAARLLRLEEEVKAAEADWAEQRHALEQHRHETQQAQQARQLEEARFRQQLAELALRLDEVARPIRTLQAQVAELLEAVRRQRDDTGQDTRRYDELRILIEHLAAHIERLSATDQSLRGGLEAVTTEVERLGREVTRLHDAIRIVEQDVRRRVAEAMQVIETLQVQLKEGASRDSQLAEELERVQEFLAAVPQQFDDLRSVAQRLGADIERVRSHSSERDDLLLERVEEIRQQFDQALRDLAAVSDQRAERVQAEFETLQAVDRELRYRIDLIEVRLDELREIDRQLRAELWRLLEQRVRLHFEQAQQELEQFIEQRQRAERGEGPVS
SIO_010081: TRD_RS00880
subclass of: SO_0000673
so part of: TRD_RS00880
location: 187849..188964
location: region:187849-188964:1
so has part: feature:187849-188964:1:exon

WP_041435867.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:187849-188964:1:exon

TRD_RS00885
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: hisF
locus tag: TRD_RS00885
old locus tag: trd_0183
so part of: sequence
location: 188964..189746
location: region:188964-189746:1
so has part: feature:188964-189746:1:exon
subclass of: SO_0000010

position:189746:1
position: 189746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:188964-189746:1:exon

TRD_RS00885
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: hisF
locus tag: TRD_RS00885
old locus tag: trd_0183
EC number: 4.3.2.10
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012641596.1
GO function: GO:0000107 - imidazoleglycerol-phosphate synthase activity [Evidence IEA]
GO process: GO:0000105 - histidine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: imidazole glycerol phosphate synthase subunit HisF
translation: MLKRRIIPCLDVTAGRVVKGVQFLDLRDAGDPVELAARYDAEGADELVFLDITASAEGRETMVEVVRRTAKEVFIPLTVGGGVRTPADMYRLLRAGADKVSVNTAAVLDPDLIRVCAQRFGSQCVVLAIDARRRPEGGWEVYTHGGRRPTGLDVIEWAKQGVSLGAGEILLTSMDTDGTQQGYDLALLRAVVDAVGVPVIASGGAGTLEHLYQALTMGGAHAVLAASIFHFGRYSVAEAKRYLAARGVPVRHVSVEFTPS
SIO_010081: TRD_RS00885
subclass of: SO_0000673
so part of: TRD_RS00885
location: 188964..189746
location: region:188964-189746:1
so has part: feature:188964-189746:1:exon

WP_012641596.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:188964-189746:1:exon

TRD_RS00890
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00890
old locus tag: trd_0184
so part of: sequence
location: 189972..191255
location: region:189972-191255:1
so has part: feature:189972-191255:1:exon
subclass of: SO_0000010

position:189972:1
position: 189972
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:191255:1
position: 191255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:189972-191255:1:exon

TRD_RS00890
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00890
old locus tag: trd_0184
inference: COORDINATES: protein motif:HMM:NF013073.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: C40 family peptidase
translation: MGKRRLPLWFVASYCAFLAAIFAFSPVLATNDLVTGALGQVSGTNGDGVNVRAEPGLGASRVGGLPEGARVRVVEGPRAASDGTTWYRIENGGMTGWVLADYLARAVPVAGDTVLVTGTGGYGLRLRETAGLESRVLAIMPEGGRAVATGSPVQDAAGTSWVPVRHEGVDGYAALAYLVVVEGDSTPVAQAQPIANTPTIRVGGNVEVVNTDGQGVNVRQGPGYGRPVAAVAPEGAVMRVIGGPQTDGQGITWWQVDYRGLQGWAHGGYLAPTDREPGAPAATPAEAAPQSNPVPTTPAPPSTVGDAIVATAMQYLGRPYAWGGTTPAGFDCSGFVYFVVNQVLGGGFPRSLEAQAVSGVSVDPNQLQPGDLVFFQNTYKWGLSHVGIYIGNGRFIHAENYGTGVTISELWGDYYGPRFYTARRVGT
SIO_010081: TRD_RS00890
subclass of: SO_0000673
so part of: TRD_RS00890
location: 189972..191255
location: region:189972-191255:1
so has part: feature:189972-191255:1:exon

WP_012641597.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:189972-191255:1:exon

TRD_RS00895
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00895
old locus tag: trd_0186
so part of: sequence
location: complement(191637..192536)
location: region:191637-192536:-1
so has part: feature:191637-192536:-1:exon
subclass of: SO_0000010

position:191637:-1
position: 191637
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:192536:-1
position: 192536
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:191637-192536:-1:exon

TRD_RS00895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00895
old locus tag: trd_0186
inference: COORDINATES: protein motif:HMM:NF024141.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter permease
translation: MRALIAAEWFKVTRRPMTWIALGILLAIMATLRLLLIALSFVSLPSAPGQEMPTNLFADLVTLPGAIADSVNFLPSTGIFALLVVAASFAGTEFAWGTIVPLLARGASRTRFVLAKALVALVVALLYLIATTVVGLVLGAIASQLHHGQIPLEWLQRDWREFLLALLRAYWATVPYVLAALAIALVFRSSALAMGMVLAYVIVEQVGLGVLQLLRPMIEDSGFSWLFTLLDWTLLGQNASTLQALNTRAFLPTGLAEQATSGDLHPWRAAVVLAAYSFAFLLAALVALRRDIPTRPTSA
SIO_010081: TRD_RS00895
subclass of: SO_0000673
so part of: TRD_RS00895
location: complement(191637..192536)
location: region:191637-192536:-1
so has part: feature:191637-192536:-1:exon

WP_012641599.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:191637-192536:-1:exon

TRD_RS00900
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00900
old locus tag: trd_0187
so part of: sequence
location: complement(192551..193465)
location: region:192551-193465:-1
so has part: feature:192551-193465:-1:exon
subclass of: SO_0000010

position:192551:-1
position: 192551
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:193465:-1
position: 193465
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:192551-193465:-1:exon

TRD_RS00900
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00900
old locus tag: trd_0187
inference: COORDINATES: protein motif:HMM:NF012235.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter ATP-binding protein
translation: MTSETILVVEGLTKRFGSRTAVDNLSFSLGRGELVGLLGPNGAGKTTTLSMIAGLIRPTAGRIVLFGRPLAESREQLRRVGLTPEVASFYPYLDARQNLSVMARVYGADPAEIDHLLERVGLLEHARHPFRTYSQGMRQMLSLANALLADPDLLLLDEPTNGLDPYGQQRVHDLLRELVARGKTILLSSHLLRDVQELCQRVIIIHRGRLIEDSHIERLLRPSELPVLVRTVADDRALLLLSGPARPDWIRGVERRDDHLIVHLPSERLPELSAFLVHHELYLRELRPLEGDLVTAFVELTRER
SIO_010081: TRD_RS00900
subclass of: SO_0000673
so part of: TRD_RS00900
location: complement(192551..193465)
location: region:192551-193465:-1
so has part: feature:192551-193465:-1:exon

WP_012641600.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:192551-193465:-1:exon

TRD_RS00905
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: recA
locus tag: TRD_RS00905
old locus tag: trd_0188
so part of: sequence
location: complement(193510..194574)
location: region:193510-194574:-1
so has part: feature:193510-194574:-1:exon
subclass of: SO_0000010

position:193510:-1
position: 193510
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:194574:-1
position: 194574
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:193510-194574:-1:exon

TRD_RS00905
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: recA
locus tag: TRD_RS00905
old locus tag: trd_0188
inference: COORDINATES: protein motif:HMM:TIGR02012.1
GO component: GO:0005737 - cytoplasm [Evidence IEA]
GO function: GO:0008094 - ATP-dependent activity, acting on DNA [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase RecA
translation: MDRQKALELAISQIERSFGKGAIMRMGEDPSKLQVDVIPTGAIALDLALGVGGIPRGRITEIFGPESSGKTTLALHVIAQAQRMGGIAAYIDAEHAFDPVYAERLGVDLDNLLISQPDTGEQALEITETLVRSGAVDVVVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTGAISRSKTAVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRKVDAIKEGNETVGTRVRVKVVKNKVAPPFRQAEFDIMYNEGISVAGNLLDVATDLGIIRKSGAWYYLGEERLGQGRENAKAFLKANPELMREIEQRIRQAAPELRGRIQYDGSAAEESDAESAVPTLFDV
SIO_010081: TRD_RS00905
subclass of: SO_0000673
so part of: TRD_RS00905
location: complement(193510..194574)
location: region:193510-194574:-1
so has part: feature:193510-194574:-1:exon

WP_012641601.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:193510-194574:-1:exon

TRD_RS00910
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00910
old locus tag: trd_0189
so part of: sequence
location: complement(194660..194998)
location: region:194660-194998:-1
so has part: feature:194660-194998:-1:exon
subclass of: SO_0000010

position:194660:-1
position: 194660
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:194998:-1
position: 194998
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:194660-194998:-1:exon

TRD_RS00910
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00910
old locus tag: trd_0189
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012641613.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cyclic-di-AMP receptor
translation: MKLLIAIVQSEDADRLIGELVNEGFRVTRIASSGALLRRENASLLLGVEDHQVTRVLSIIRRTCRRRKEVVIPYAPALEPGLLWLPENFEVEVGGATVFVLPVERVERITGD
SIO_010081: TRD_RS00910
subclass of: SO_0000673
so part of: TRD_RS00910
location: complement(194660..194998)
location: region:194660-194998:-1
so has part: feature:194660-194998:-1:exon

WP_012641602.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:194660-194998:-1:exon

TRD_RS00915
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00915
old locus tag: trd_0190
so part of: sequence
location: complement(194995..196659)
location: region:194995-196659:-1
so has part: feature:194995-196659:-1:exon
subclass of: SO_0000010

position:194995:-1
position: 194995
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:196659:-1
position: 196659
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:194995-196659:-1:exon

TRD_RS00915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00915
old locus tag: trd_0190
inference: COORDINATES: protein motif:HMM:NF012235.2
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter ATP-binding protein
translation: MIEVEALRYRYPTSRYPALVAPHWAVEAGEFVLLAGETGSGKTTLLRSLVSLVPHFYGGWFGGRVLVGGRDTRHHRPADLAGLVGYVGQEPETQTLLDRVWDEIAFALENLGFPPRVVAARVEEALDLLGLAHLRNRPIETLSGGERQRLTLASVLALRPQLLLLDEPTSQLDPWSAETVLEVLRRLVDELGITLVIAEHRLDRLLGSCTRLTLLEDGKIVADGSPQHVAERLPDPPILVQVSRLLGWSPPALSVAEGKRRLRGCQLLSPVQRPAPSPGPTPLALERIACRRGERLVLEDVTLEVARGLVTGIVGRNGSGKTTLLRAALGLEGIVRGRVWLGGRPVHETLRAGESGSIAYVPQYPGALLVGSRLRDDLELVARVRQVSTTAVDEIVDLFELHPLLDTHPADLSSGERQRAALAVALTGHPALIVLDEPTRGLGLRLKQRLASELRRRAAAGAAVLLTTHDVDFAAMVADRIVLLSEGRIVNEGPPHLVLGESFSYAPIVSRLFGPSFVTVSDVEQALRENPAPAKHARIGYTEGDYGEFDRERA
SIO_010081: TRD_RS00915
subclass of: SO_0000673
so part of: TRD_RS00915
location: complement(194995..196659)
location: region:194995-196659:-1
so has part: feature:194995-196659:-1:exon

WP_012641603.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:194995-196659:-1:exon

TRD_RS00920
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00920
old locus tag: trd_0191
so part of: sequence
location: complement(196656..197651)
location: region:196656-197651:-1
so has part: feature:196656-197651:-1:exon
subclass of: SO_0000010

position:196656:-1
position: 196656
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:197651:-1
position: 197651
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:196656-197651:-1:exon

TRD_RS00920
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00920
old locus tag: trd_0191
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNAITWLLWALVLVLAISVTRNPFYLSLAALAVATVWIAVDTARPLGRQAPRLPLLAAGFLLPWSTAVNALLAHIGDRVLFRLPAWPVIGGPITLNAALYGLLTGIALTTALAGTTLLHAVIDRHQALRAIPPNQRVLATTLAIALNALPAFATAARDAVEASRLRGLALPRWRQLQIVVAAILYRGIDYSLATAEVLETRSFAARHRARPATQASSLAMLLASFAVIGGSLAGKPSLALVGVAGLSLGSALIVHSTWRNLRTLQWSLATGAAASLLLAASTLLVLSLRDSAADLAYSPYPALRWPGFSPLAGFAFLLLASPALFLRGSAR
SIO_010081: TRD_RS00920
subclass of: SO_0000673
so part of: TRD_RS00920
location: complement(196656..197651)
location: region:196656-197651:-1
so has part: feature:196656-197651:-1:exon

WP_012641604.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:196656-197651:-1:exon

TRD_RS00925
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00925
old locus tag: trd_0192
so part of: sequence
location: complement(197648..198586)
location: region:197648-198586:-1
so has part: feature:197648-198586:-1:exon
subclass of: SO_0000010

position:197648:-1
position: 197648
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:198586:-1
position: 198586
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:197648-198586:-1:exon

TRD_RS00925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00925
old locus tag: trd_0192
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTRTSRLLRLLLTLLLALALAGAGSTSSRAEQPNGAGLVIRYGDGRIVTAYVQFEEPTITGIELLQRAGVPVTVAQFGGLGLAVCAISGEGCPAEDCFCRAKSQPAWFWHYYGLTPDGRWVLHPVGASNRIVRDGDVDGWSWTAGESGLPALTIEEIARAHGIERSSGPPATTQPTAPPAPSVTSPTEPAVTSPVTPVPTSGQPAVGSSTTQPDGQQTGPASSPTVTPTLPTPTLGVLTPTSLAFAEAQPTVPPTAAALAGSSSTPSIGVTPSAPVADSHPTGPPWGALLFTSLAAIVLLAYSFARWRRRSP
SIO_010081: TRD_RS00925
subclass of: SO_0000673
so part of: TRD_RS00925
location: complement(197648..198586)
location: region:197648-198586:-1
so has part: feature:197648-198586:-1:exon

WP_012641605.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:197648-198586:-1:exon

TRD_RS13415
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS13415
old locus tag: trd_0193
so part of: sequence
location: complement(198583..200088)
location: region:198583-200088:-1
so has part: feature:198583-200088:-1:exon
subclass of: SO_0000010

position:198583:-1
position: 198583
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:200088:-1
position: 200088
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:198583-200088:-1:exon

TRD_RS13415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS13415
old locus tag: trd_0193
inference: COORDINATES: protein motif:HMM:NF012647.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: terpene cyclase/mutase family protein
translation: MRRILAILTIFLLVLAPGASVSANQFTVGRALTGAVTWLTTQQRADGGFAGFTGESDPGMTVDAVLALASVGIDPGSVQQVGGASAIAYLESAAARYSEKPGGAAKLILAAVASGRDPRAFGGVDLVARLQRAYDRATGLYDQQLFSNAYALLALAAAGVPVPERAVQAVLERQAADGSWAWDGSTEPGAGDSNTTALVIQALVAAGQREHPQVRQALLYLRSVQAADGSFAYQPADQLVGDANSTALAVQALLAAGEEPQSPSWRFALDALARFANSSGALRWRDDAPDDNLFATVQAIPALAREAFPLRGIALPLTRARVPFETTAEGCRLFPETGHSLCGPFLETWEQRGGVANFGYPITGPFFDPHLRLLVQYTERARFEFHLKPDGSTLVMLGRLGAERLPAAPREPFAPAQPGDPAACTYFVETQHNLCHGFRAYWEQYGGLAVFGYPLSEEFVEDGMVVQYFERARFEWHPGSWPERHDVLLTRLGARIVEEGS
SIO_010081: TRD_RS13415
subclass of: SO_0000673
so part of: TRD_RS13415
location: complement(198583..200088)
location: region:198583-200088:-1
so has part: feature:198583-200088:-1:exon

WP_012641606.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:198583-200088:-1:exon

regulatory
type: Feature
subclass of: SO_0000001
RO_0002162: 309801
regulatory class: riboswitch
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF00174
inference: COORDINATES: profile:INFERNAL:1.1.4
note: cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
bound moiety: adenosylcobalamin
so part of: sequence
location: complement(200250..200385)
location: region:200250-200385:-1
so has part: feature:200250-200385:-1:region

position:200250:-1
position: 200250
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:200385:-1
position: 200385
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:200250-200385:-1:region

TRD_RS00940
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00940
old locus tag: trd_0194
so part of: sequence
location: complement(200776..202062)
location: region:200776-202062:-1
so has part: feature:200776-202062:-1:exon
subclass of: SO_0000010

position:200776:-1
position: 200776
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:202062:-1
position: 202062
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:200776-202062:-1:exon

TRD_RS00940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00940
old locus tag: trd_0194
EC number: 1.1.99.24
inference: COORDINATES: protein motif:HMM:NF012678.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hydroxyacid-oxoacid transhydrogenase
translation: MSANLTQTVIAMDLVPFRFGPGATADVTVELERLGARRVLLVTDRHLRQHGLVEPVEAAILRAGAEVVVFDQVHIEPTDRSLRDAIAFAQRVQPDAYVSLGGGSTIDTAKAMNLFTSYPADLFDYINKPVGRGNPVPGPLKPHLALPTTAGTGSETTAVIALELTDRRLKTGISHRFIRPTMAIVDPLNTVTCPPMVTAFAGLDVLCHAIESYTAKPYHVRPRPDSPTERPAYIGSNPVADLWSAQAIRWGARYLRRAVYNPLDLEARTFMALASLTAGIGFGNAGVHIPHAMSYPIAGLVRDFFPPNYEVDEPLIPHGLAVVVGAPAGLRFTAPAWPERHAEVAEMLGIDTRGLPVRAAAEAVADALIQLMRDLGLPSGLAELGFTESDIPALVEGTLAQQRILVNSPRPVDERALRAIYREAMRYW
SIO_010081: TRD_RS00940
subclass of: SO_0000673
so part of: TRD_RS00940
location: complement(200776..202062)
location: region:200776-202062:-1
so has part: feature:200776-202062:-1:exon

WP_012641607.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:200776-202062:-1:exon

TRD_RS00945
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00945
old locus tag: trd_0195
so part of: sequence
location: complement(202202..203074)
location: region:202202-203074:-1
so has part: feature:202202-203074:-1:exon
subclass of: SO_0000010

position:202202:-1
position: 202202
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:203074:-1
position: 203074
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:202202-203074:-1:exon

TRD_RS00945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00945
old locus tag: trd_0195
EC number: 2.4.2.1
inference: COORDINATES: protein motif:HMM:TIGR01697.1
GO function: GO:0004731 - purine-nucleoside phosphorylase activity [Evidence IEA]
GO process: GO:0009116 - nucleoside metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: purine-nucleoside phosphorylase
translation: MMDILHPWQERAAERAQILAQRYHHTPDALIVLGSGLATLPEDAHVVARVPLDELTAIAAPAVTGHPRELVLAEWNGHPIWFCLGRYHLYQGLSAAEAAAPIALLAHLPGPIVILTNAAGSLHPTFAPGDLVLIRDHFFVPGLAGHHPLIPPAGRVRFFSLRDAYDRHLRAVARAAAARLGLELPEGTYAMVAGPTFETAAELRWLRAAGADLVGMSTIPEVILARALGLRVLAISVVTNLAIPEEPAIPTHEEVAAIGEQARPRLHRLLGFFLDQLAEESDAVTGREPV
SIO_010081: TRD_RS00945
subclass of: SO_0000673
so part of: TRD_RS00945
location: complement(202202..203074)
location: region:202202-203074:-1
so has part: feature:202202-203074:-1:exon

WP_143714584.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:202202-203074:-1:exon

TRD_RS00950
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: recO
locus tag: TRD_RS00950
old locus tag: trd_0196
so part of: sequence
location: complement(203034..203852)
location: region:203034-203852:-1
so has part: feature:203034-203852:-1:exon
subclass of: SO_0000010

position:203034:-1
position: 203034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:203852:-1
position: 203852
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:203034-203852:-1:exon

TRD_RS00950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: recO
locus tag: TRD_RS00950
old locus tag: trd_0196
inference: COORDINATES: protein motif:HMM:TIGR00613.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA repair protein RecO
translation: MAETTNHRIRLYRTEAIVLRRRDLGEADRILTLFTPKAGKLRVIAKGIRRPQSRLAGHLDLFVRTQVLLARGRELDIVTQAQLVEPFTGLRREPWRAGWAGYLADLTDRATVDEDPQPALYDLLLECLRLLAELPDPFAVVRRFEMRLLVLLGYQPELVVCPHCGKQLTPGRLAFAPDHGGILCGECVGHSAGEVPLSVGAVKALRLLLADHWQELARRPLSLALRGQITSALQAALQAHIGDIAASAAVATLLQEEGHDDGHPPSLAGTSS
SIO_010081: TRD_RS00950
subclass of: SO_0000673
so part of: TRD_RS00950
location: complement(203034..203852)
location: region:203034-203852:-1
so has part: feature:203034-203852:-1:exon

WP_052294024.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:203034-203852:-1:exon

TRD_RS00955
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00955
old locus tag: trd_0197
so part of: sequence
location: complement(203867..204508)
location: region:203867-204508:-1
so has part: feature:203867-204508:-1:exon
subclass of: SO_0000010

position:203867:-1
position: 203867
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:204508:-1
position: 204508
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:203867-204508:-1:exon

TRD_RS00955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00955
old locus tag: trd_0197
inference: COORDINATES: protein motif:HMM:TIGR01182.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
translation: MNWIETYRLIAVIRLDDLSCAVELAEALLEGGVRVLEFTYTNREAGRAIEQVRHRFDGSCLVGAGTVLDAETARQAMLAGAQFIVTPTLRRETIEICRRYSIPSVIGAFTPTEILSAWEWGADYIKVNPASLAGPSYFKDVLAPLPQVKLIPSGGVTLETAPAFLAAGAVAVAVGSHLIDRTLVARRDWAGLRERAHQWAELVAHPDIGVPAS
SIO_010081: TRD_RS00955
subclass of: SO_0000673
so part of: TRD_RS00955
location: complement(203867..204508)
location: region:203867-204508:-1
so has part: feature:203867-204508:-1:exon

WP_012641610.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:203867-204508:-1:exon

TRD_RS00960
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00960
old locus tag: trd_0199
so part of: sequence
location: 204586..205449
location: region:204586-205449:1
so has part: feature:204586-205449:1:exon
subclass of: SO_0000010

position:204586:1
position: 204586
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:205449:1
position: 205449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:204586-205449:1:exon

TRD_RS00960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00960
old locus tag: trd_0199
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012641611.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NAD(+)/NADH kinase
translation: MARRFGVVAAHGKPEAVELADRIQRWLAAHQCQIANEEALPVVWPELDAIIAIGGDGLIMRVAHHYPDVPILGINVGRVGFLALAEREGWERALHDLVHDRYHVQEGPTLAVQLERGRSVLVDAWAINDVVVRAGYQLIEVELYIDGQFVNTYPGDGMIVATPQGSTAYCMAAGGPVLTAGVHGFAVTPICPHSPIRIALVVPEQATIEQVYVSDREARLIIDGEPVASLERGDLVRVRRGKQAFRLVVLPGTNFYEAFRSKFNFQIRPEAQPSRRTRNADTPSGAR
SIO_010081: TRD_RS00960
subclass of: SO_0000673
so part of: TRD_RS00960
location: 204586..205449
location: region:204586-205449:1
so has part: feature:204586-205449:1:exon

WP_012641611.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:204586-205449:1:exon

TRD_RS00965
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00965
old locus tag: trd_0198
so part of: sequence
location: complement(205435..206055)
location: region:205435-206055:-1
so has part: feature:205435-206055:-1:exon
subclass of: SO_0000010

position:205435:-1
position: 205435
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:206055:-1
position: 206055
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:205435-206055:-1:exon

TRD_RS00965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00965
old locus tag: trd_0198
inference: COORDINATES: protein motif:HMM:NF024183.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: zinc ribbon domain-containing protein
translation: MEQLIAQAAHLLIALGGAYYLALWFALIVWTFQDIQTRTRSVIAQIFATLLVVLFSVPGALLYLLMRPRETLEEQYERALEEEYLIQDLETAGRCPHCQRPVQDDFQFCPYCRAPLKQLCIACGRLLSLDWPHCPYCGTQQPTEEGDVTVQERRSPLEAVQRALGRTPGGRRPEKTLPENEATTLPPGWSRSMRENEPDTSKLPRA
SIO_010081: TRD_RS00965
subclass of: SO_0000673
so part of: TRD_RS00965
location: complement(205435..206055)
location: region:205435-206055:-1
so has part: feature:205435-206055:-1:exon

WP_012641612.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:205435-206055:-1:exon

TRD_RS00970
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00970
old locus tag: trd_0200
so part of: sequence
location: complement(206078..206422)
location: region:206078-206422:-1
so has part: feature:206078-206422:-1:exon
subclass of: SO_0000010

position:206078:-1
position: 206078
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:206422:-1
position: 206422
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:206078-206422:-1:exon

TRD_RS00970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00970
old locus tag: trd_0200
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012641602.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cyclic-di-AMP receptor
translation: MTAPSKLVIAVVQARDADRLLDALQHEGFRATRISSTGGFLREQNVTLLMGVEAHRIGEVLRLIKAHCYTRTQYVNPLFPIVESGEFFVPQPIEVEVGGANVFVVPIERFERLP
SIO_010081: TRD_RS00970
subclass of: SO_0000673
so part of: TRD_RS00970
location: complement(206078..206422)
location: region:206078-206422:-1
so has part: feature:206078-206422:-1:exon

WP_012641613.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:206078-206422:-1:exon

TRD_RS00975
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: tmk
locus tag: TRD_RS00975
old locus tag: trd_0201
so part of: sequence
location: complement(206419..207051)
location: region:206419-207051:-1
so has part: feature:206419-207051:-1:exon
subclass of: SO_0000010

position:206419:-1
position: 206419
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:207051:-1
position: 207051
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:206419-207051:-1:exon

TRD_RS00975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: tmk
locus tag: TRD_RS00975
old locus tag: trd_0201
EC number: 2.7.4.9
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012641614.1
GO function: GO:0004798 - thymidylate kinase activity [Evidence IEA]
GO process: GO:0015949 - nucleobase-containing small molecule interconversion [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: dTMP kinase
translation: MSWFITFEGPEGAGKTTQCALLAARLREAGYSLLVTREPGGTPLGETIREWLLAGEALRPETEALLFTAARAEHVWDRIRPALERGTIVLCDRYVDSTLAYQGAGRGLDEGWLRELHRIATGDLWPDLTILLDVPVEVGLARRRAAAATITRLDQEELAFHRRVRAWYHAAAQRDPQRWRVVDATLPPEVVADAVWATVTEVMKRGRRSP
SIO_010081: TRD_RS00975
subclass of: SO_0000673
so part of: TRD_RS00975
location: complement(206419..207051)
location: region:206419-207051:-1
so has part: feature:206419-207051:-1:exon

WP_012641614.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:206419-207051:-1:exon

TRD_RS00980
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00980
old locus tag: trd_0202
so part of: sequence
location: complement(207048..208766)
location: region:207048-208766:-1
so has part: feature:207048-208766:-1:exon
subclass of: SO_0000010

position:207048:-1
position: 207048
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:208766:-1
position: 208766
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:207048-208766:-1:exon

TRD_RS00980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00980
old locus tag: trd_0202
inference: COORDINATES: protein motif:HMM:NF040318.1
GO function: GO:0003676 - nucleic acid binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: R3H domain-containing nucleic acid-binding protein
translation: MTKPVTILPAMPEQTITDNLEDLLAVLPPDIVEALREYNSPEDRAKLLEIVLDLGRRPEARFEDREVYLADREITREDIAYVASRIGRFGDDNRAGIERTLHRISAIRSRSGEIVGLTCRIGRAVYGTVAIIRDLIESGESILLLGRPGVGKTTMLRETARVLADDLRKRVIVVDTSNEIAGDGDIPHPAIGRARRMQVPTPSLQHAVMIEAVENHMPEVIVIDEIGTELEAAAARTIAERGVQLIGTAHGNTLENIMMNPTLSDLIGGIQSVTLSDEEARRRGTQKSILERKAPPTFGVLVEIQSRNRVAVHRDVAAAVDAILRGQPLRVEIRERNPDGTVSIWYEELHGQDQRAERSMLPSGPRRTYQRIPGTPAPTRPATPSGTIVAVAPPSEPIRRTMRLFPFGVSRNRLEDVIRQLMLPVELVRSPREADAVVTLKNYFRKRPQVLREAEQRGIPVYVLRSNTAQQMANLFRSLFPERFAGEQEPESAADDGDENAAHDRILAAMEEAEAAAHQVLQGTRSRIELRPQEAWIRRLQHQLAERYNLASRSRGREPFRRVEIYREDESW
SIO_010081: TRD_RS00980
subclass of: SO_0000673
so part of: TRD_RS00980
location: complement(207048..208766)
location: region:207048-208766:-1
so has part: feature:207048-208766:-1:exon

WP_226980704.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:207048-208766:-1:exon

TRD_RS00985
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00985
old locus tag: trd_0203
so part of: sequence
location: complement(208795..209781)
location: region:208795-209781:-1
so has part: feature:208795-209781:-1:exon
subclass of: SO_0000010

position:208795:-1
position: 208795
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:209781:-1
position: 209781
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:208795-209781:-1:exon

TRD_RS00985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00985
old locus tag: trd_0203
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFWWRANNAPMIADDSPDQPAAALRGDLVALPAAFHLSPIRGLLGSAFGAATGRFVHERGQRAYAQVIAEPGRDHWFIARLVVSRAEEGQRLLDRLAREAGLRGVIRLHTLIPEHPDLIAWWQRAGFTPFRRIHLLAGQREQLALPSQSLTIRHQQALDAWEVQRLYERVTPRPVQFAEARTRAAWHVGQRAGWRIRGYLLTADGETRAYCRVRSRAGWHIVELVAEDQAASEAIAIVGAALACCARPRDQVLLLLPDEAGATRARFEQAGLTLLETRLWVARYTIRRIRAGFPIAEHARLAGLAEAPRVLYHHERPKVAVLERATRS
SIO_010081: TRD_RS00985
subclass of: SO_0000673
so part of: TRD_RS00985
location: complement(208795..209781)
location: region:208795-209781:-1
so has part: feature:208795-209781:-1:exon

WP_012641616.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:208795-209781:-1:exon

TRD_RS00990
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: recR
locus tag: TRD_RS00990
old locus tag: trd_0204
so part of: sequence
location: complement(209812..210519)
location: region:209812-210519:-1
so has part: feature:209812-210519:-1:exon
subclass of: SO_0000010

position:209812:-1
position: 209812
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:210519:-1
position: 210519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:209812-210519:-1:exon

TRD_RS00990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: recR
locus tag: TRD_RS00990
old locus tag: trd_0204
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011244903.1
GO process: GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombination mediator RecR
translation: MSISVTSDGDEWNRPFWYTQTSERAFCLTATEVTVRARGPAEPIARLIEEFAKLPGIGPKTASRLAYHLLRCSREDALALAQAIIEVKERVQLCSRCFNLTDVDPCPICADPSRDQRTICVVEDPLDVLALERTGAYHGVYHVLHGVISPVDGIGPERLRIRELVHRVQQEQPNEVILALNPNIEGDATAMYIARQLIPLGVTVTRPASGLPVGGDLEYADEITLGRALAGRRAL
SIO_010081: TRD_RS00990
subclass of: SO_0000673
so part of: TRD_RS00990
location: complement(209812..210519)
location: region:209812-210519:-1
so has part: feature:209812-210519:-1:exon

WP_275450107.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:209812-210519:-1:exon

TRD_RS00995
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS00995
old locus tag: trd_0205
so part of: sequence
location: complement(210497..212734)
location: region:210497-212734:-1
so has part: feature:210497-212734:-1:exon
subclass of: SO_0000010

position:210497:-1
position: 210497
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:212734:-1
position: 212734
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:210497-212734:-1:exon

TRD_RS00995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS00995
old locus tag: trd_0205
inference: COORDINATES: protein motif:HMM:NF013727.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA translocase FtsK
translation: MARKRAKERRTRGETAPLAAGSQRRRLRAIVTRLAQVAALVPRRLPRDLAGLFLATVGVLLTLALFGHERETGLAGWFAQTCRQLFGRGAIVVPLACWWGALELVASRSRAGTVRRAVGLALYGSAAVALLDARPADQVEEAGGYIGAGVAALLRLIGGDLGLGLLALALGLAGSTLVAGIELGTLARTILTAARRTGQIVRRRSSARAVDLPASPAPAESGRSDETVQRETTRPVIATRHTPASRSRGRRTPVSPQQRVQERPSGEPEPVAANAATPAAAGDQVLPEISRLQRYEASLPDAEELERKAAIIQETLANFRVDARVREIYPGPAVTLFTLEPGPGVKVRRITELQNDLALALAAPAIRIEAPVPGMARVGIEVPNSAISTVGLREVLESATFQRSRARLPLALGRDVHGEYVVADLTRMPHLLIAGATGSGKSVCINGIIATFLLTRRPDELQMLLIDPKKVELAGYDGVPHLKRPVVTDMGLVVGALRRVLQEMERRYELFAQLGVRNLEGYRLRREEDPSLEPLPYLVVIIDELADLMLTTPDEVETLLVRLAQMARATGIHLLIATQRPSVDVLTGLIKANVPARIAFAVTSQTDSRVILDMPGAERLLGRGDMLYLPPDAARPLRVQGSFIDDRDLEYVVEHWRQLYPVPQYDPSWLDLEETIQETSRGEDPLLEQARQLVRQLGTASTSLLQRRLRIGYNRAARLMEQLEAEGIVGPAEGARGRVVYLGDE
SIO_010081: TRD_RS00995
subclass of: SO_0000673
so part of: TRD_RS00995
location: complement(210497..212734)
location: region:210497-212734:-1
so has part: feature:210497-212734:-1:exon

WP_012641618.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:210497-212734:-1:exon

TRD_RS01000
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01000
old locus tag: trd_0206
so part of: sequence
location: complement(212784..213422)
location: region:212784-213422:-1
so has part: feature:212784-213422:-1:exon
subclass of: SO_0000010

position:212784:-1
position: 212784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:213422:-1
position: 213422
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:212784-213422:-1:exon

TRD_RS01000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01000
old locus tag: trd_0206
EC number: 3.2.2.27
inference: COORDINATES: protein motif:HMM:TIGR00758.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: uracil-DNA glycosylase
translation: MSEERSARELLESIAERVRHCTRCDLWRTRTQAVPGEGDPHAEVMFIGEAPGYHEDRQGRPFVGAAGQFLNELLGRAGLRREQVYITNVVKCRPPGNRDPLPDEIAACAPYLDEQIAVIRPSVIVTLGRYSMARWFPNEKISRIHGKPRRFGDVVVVPMYHPAAALHQPALKELVEKDFDALREIIAQARAEAARTVEAQQSEEKAQQMRLF
SIO_010081: TRD_RS01000
subclass of: SO_0000673
so part of: TRD_RS01000
location: complement(212784..213422)
location: region:212784-213422:-1
so has part: feature:212784-213422:-1:exon

WP_041435876.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:212784-213422:-1:exon

TRD_RS14030
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS14030
old locus tag: trd_0207
so part of: sequence
location: complement(213313..215394)
location: region:213313-215394:-1
so has part: feature:213313-215394:-1:exon
subclass of: SO_0000010

position:213313:-1
position: 213313
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:215394:-1
position: 215394
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:213313-215394:-1:exon

TRD_RS14030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS14030
old locus tag: trd_0207
inference: COORDINATES: protein motif:HMM:TIGR00573.1
GO function: GO:0004527 - exonuclease activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: exonuclease domain-containing protein
translation: MSDQPVEPAYDRLRSRARQLLLARGGIASEEQLIEGLFGSLGNRRLWAPFLAQLLETDAEIVRRPDGTWALRRRPLVPSRGWPRSFVALDVETTGLRPARHRIIEIGAVRYEDGCCVERFSVLVNPHRRLPVYIVRLTGIRDEDLLTAPSFVDVAAAFRVFLGESTVIGYNVGFDLDFLNAELRRIGQGPLPNPALDVLPLARALLTANGRYDLDAICRSIGLARGTRHRALPDAEATAVLYLHLVERAEQVGYRSPSDLQPAATRRTIVVEPVARGRAVLDQRLLADTPELPGVYLMRDALGRVLYVGKARNLRQRVRSYFSQPLGYTRKMDGLLESVAEIETVVTGSELEALLLESQFVQRYKPPYNTQLRNHEAYPYVKVELGRPWPRLMLARQRDDDDAVYVGPFRSTAAARSVVELLHQLLPLRTCHRSFRDARSYGRPCLQLTLGRCIGPCTGCVTPDEYRALVDCALRYLSGETSVVVERAQQLLADAVERLDFERAARLRDLLRRSEELVFSHRLVRQTISGRPCVIVTPCPETGDRAFLLIVAGRLWARVVADPREHDAAVAARLGAAWERAQQAAPWTLDQDSLDAAVIIARWLSEHAEDPTVFFLEHPVDWLALVRNGRSLPASAFAVHAPVDDENGTTKRTRGADSERGTQCEGTPGKHRRARPSLHALRSMADPHSGGAR
SIO_010081: TRD_RS14030
subclass of: SO_0000673
so part of: TRD_RS14030
location: complement(213313..215394)
location: region:213313-215394:-1
so has part: feature:213313-215394:-1:exon

WP_012641620.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:213313-215394:-1:exon

TRD_RS01010
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: ligA
locus tag: TRD_RS01010
old locus tag: trd_0210
so part of: sequence
location: 215547..217634
location: region:215547-217634:1
so has part: feature:215547-217634:1:exon
subclass of: SO_0000010

position:215547:1
position: 215547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:217634:1
position: 217634
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:215547-217634:1:exon

TRD_RS01010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: ligA
locus tag: TRD_RS01010
old locus tag: trd_0210
EC number: 6.5.1.2
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012641622.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0003911 - DNA ligase (NAD+) activity [Evidence IEA]
GO process: GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NAD-dependent DNA ligase LigA
translation: MAEQPALQADRVPPEVRARVEELRRLIQRYNYEYYVLNAPTVSDAEYDALMLELRRWEEQYPELVTPDSPTQRVGAPPAEGFATVQHEIPMLSLGNVFSDGEIRAWAERVYRLSGRQDVEFVTEPKVDGLAVSLLYRDGVLVRGATRGDGYTGEDVTNNVRTIRMIPLRLYPPEGVIVPPVLEVRGEVYMNVRDFERLNRERGEQGLPLFANPRNAAAGSLRQLDPSVTASRPLRFAAWDIGLWEGTEPPATHLATLEFLRQLQIPVVPDYRLCRSVDEVIAECHRWQERRDALEFEADGVVIKVNDRALYQALGVVGREPRGATAYKFPAHEKTTIVRDVIWSVGRTGKLTPVAVLEPVEIGGVIVERATLHNEEEIRRLGLLIGDAVVVQRRGDVIPKVVATIPQRRDGDERPVDIPRQCPVCGAHTIRLEGEVDRYCPNPNCPARLKASVRHFASRNAMDIEGLGEKISDLFVDLGIIRSLPDLYEIDWARVLQLEGFGPKKVENLRKAIEASKNRPFARFLFALGIRHVGERNAQLLADHFRSIDRLMEATIDELLQIPGFGPAVAQSVFEFFREPKNREMIERFRRLGVRMAEEEAAAVATVQGPLAGKTVVLTGRLETLTRSQAEELLRRAGAHVTDSVSRKTDYVFAGADPGSKYVRAQQLGVPILGEEDLLRMLRESGIEVEAAARS
SIO_010081: TRD_RS01010
subclass of: SO_0000673
so part of: TRD_RS01010
location: 215547..217634
location: region:215547-217634:1
so has part: feature:215547-217634:1:exon

WP_012641622.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:215547-217634:1:exon

TRD_RS01015
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: pyrE
locus tag: TRD_RS01015
old locus tag: trd_0209
so part of: sequence
location: complement(217629..218252)
location: region:217629-218252:-1
so has part: feature:217629-218252:-1:exon
subclass of: SO_0000010

position:217629:-1
position: 217629
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:218252:-1
position: 218252
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:217629-218252:-1:exon

TRD_RS01015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: pyrE
locus tag: TRD_RS01015
old locus tag: trd_0209
EC number: 2.4.2.10
inference: COORDINATES: protein motif:HMM:TIGR01367.1
GO function: GO:0004588 - orotate phosphoribosyltransferase activity [Evidence IEA]
GO process: GO:0009220 - pyrimidine ribonucleotide biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: orotate phosphoribosyltransferase
translation: MVEVLADEQTAQTLLRDLHDVGALLTGHFLLASGRHSDRYIEKFALLRWPRRVEEMCRELLARLPWRGIDAVVGPTTGGILLAFECARQLGIQAAYAEREHEGSSRRVIRRGTRFSPGTRVLVVDDVLTTGGSLRETLRAVGEHPVEIVGVAVLIDRSTESIDLGVPPVALLRLDIANWPPDRCPLCQQGLPLVKPGTTALPGHASS
SIO_010081: TRD_RS01015
subclass of: SO_0000673
so part of: TRD_RS01015
location: complement(217629..218252)
location: region:217629-218252:-1
so has part: feature:217629-218252:-1:exon

WP_081433362.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:217629-218252:-1:exon

TRD_RS01020
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01020
old locus tag: trd_0211
so part of: sequence
location: complement(218177..219505)
location: region:218177-219505:-1
so has part: feature:218177-219505:-1:exon
subclass of: SO_0000010

position:218177:-1
position: 218177
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:219505:-1
position: 219505
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:218177-219505:-1:exon

TRD_RS01020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01020
old locus tag: trd_0211
inference: COORDINATES: protein motif:HMM:NF013832.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: vacuolar cation/proton exchanger 1a
translation: MRRWLAGLLLVPLALEFLHAPPLPALLASAAVLVPLAALLGRATEEAAAHTGPLVGGLLDSTLGKAAELIIALAALRADLHELVKASLAGSILLLILGACLLVGGLRHGLQQFDAQLAGISAPMMMLAVVLLLAPGLFTLGPTPVQGEAVEWMSVGLALVVAGLYALSLLATLRLPGTVTEHEHTAWPLRRAALVLAGATIGLLFMSEVLVGAVEPVVAATGIFAFFGGVVLVLLVESVAEHFVAVQVAHRNRMDSSLGIGYGSTLQIALAVMSILVFARLVPSRPLSLVFDVSELVALLGAALVSTLIALALAGRSDPACGLRWPGRGLFLLAMLAALRVPGQGTVCVSDPYRSARVSTRVPDTSSYRELPVSHSRLELGARTGWTSIGEADRPFGAAWASSQSIVRAARHHRRRERWSRFSPTSRLPRHSCETCTTSAHC
SIO_010081: TRD_RS01020
subclass of: SO_0000673
so part of: TRD_RS01020
location: complement(218177..219505)
location: region:218177-219505:-1
so has part: feature:218177-219505:-1:exon

WP_012641624.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:218177-219505:-1:exon

TRD_RS01025
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: carB
locus tag: TRD_RS01025
old locus tag: trd_0212
so part of: sequence
location: complement(219515..222751)
location: region:219515-222751:-1
so has part: feature:219515-222751:-1:exon
subclass of: SO_0000010

position:219515:-1
position: 219515
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:222751:-1
position: 222751
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219515-222751:-1:exon

TRD_RS01025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: carB
locus tag: TRD_RS01025
old locus tag: trd_0212
EC number: 6.3.5.5
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012641625.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO process: GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: carbamoyl-phosphate synthase large subunit
translation: MARQPLVSSVLVIGSGPIVIGQAAEFDYSGSQALRALREEGIRTIIVNSNPATIMTDEDMADAVYIEPLTVEVLERIIARERPEGLLATLGGQTGLNLAVALAEAGVLDRYGVRLLGTPLEAIRRAEDRQLFKELLLEIGEPVLESLTAYSVEDALRFAEEVPPPLIVRPAFTLGGTGGGIAFSEDELVTLVQRGIAASPIGQVLVERSLLGWKEIEYEVMRDANDTCITICNIENLDPMGVHTGDSIVVAPSQTLSDRDYQMLRSAALKIIRALGIVGGCNIQFALDPRSDQYYVIEVNPRVSRSSALASKATGYPIARIAAKLAIGRTLDEIPNPVTGKTMASFEPALDYCVVKIPRWPFDKFRHGDRRLGSQMKATGEVMAIDRCFEAALQKAVRGLETDQTDLTWEDSRWQDPSALEQALRIPTDQRLWAVAAALRRGWTPEHVSALSGIDTWFVRAIQRLVEMEQRLASEPLTAELLWEAKRLGFADRTIAALRTTTEQEIRAQRLALGLAPVYKLVDTCAAEFAAETPYFYATYEDENEAPPLDSPKAVVIGAGPIRIGQGIEFDYCSVKAAQALHRAGVAAIMLNNNPETVSTDFDASDRLYVTPLDAESVLDVLRHEASSQYDQLPPVIVQFGGQTAINLAADLAAAGVPILGTDQDAIDLAEDRRRFERFLHELGIPQPPGAGVTTLEEALETAERIGYPVLVRPSYVLGGRAMEVVYRREHLEQYLATSGAFASGRPVLIDKYLDGIELEVDALCDGHEVLVPGIMQHIERAGVHSGDSFAVYPAVELPSVHVDTLVRYTTEIALALAARGLINIQFVLHQGVVYVLEVNPRASRTVPFLSKVTGVPMVDVATQILLGRSLGDQGYRGGLWPRQPLVAVKAPVFSMAKLQGVDVQLGPEMKSTGEAMGIDRTFEAALAKAFLAAGLAIERGAPVLLSLADNDKSAGVELARGLLALGHPLVATEGTARYLRAHGVPVELTVAHIGHGHPDVLEVILERKVRGVINTPGRDEGTIQDGFLIRRAAVERGIPCLTSLDTARALVRALLGGGTSFSVQPLPAYRTREAVLA
SIO_010081: TRD_RS01025
subclass of: SO_0000673
so part of: TRD_RS01025
location: complement(219515..222751)
location: region:219515-222751:-1
so has part: feature:219515-222751:-1:exon

WP_012641625.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:219515-222751:-1:exon

TRD_RS01030
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: carA
locus tag: TRD_RS01030
old locus tag: trd_0213
so part of: sequence
location: complement(222754..223905)
location: region:222754-223905:-1
so has part: feature:222754-223905:-1:exon
subclass of: SO_0000010

position:222754:-1
position: 222754
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:223905:-1
position: 223905
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:222754-223905:-1:exon

TRD_RS01030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: carA
locus tag: TRD_RS01030
old locus tag: trd_0213
EC number: 6.3.5.5
inference: COORDINATES: protein motif:HMM:NF009475.0
GO component: GO:0005951 - carbamoyl-phosphate synthase complex [Evidence IEA]
GO function: GO:0004088 - carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO process: GO:0009220 - pyrimidine ribonucleotide biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit
translation: MSIQRSRIGALVLEDGRIFPGTPFGARRPAEGEAVFTTVMTGYQEVVTDPSFYGQLVCMTYPLIGNYGVCDEDEQSRRPWAAGLIVREYCDRPSHWKARETLASYLERWGIPGLAHVDTRALTRHLRTHGTMRAILVPDRTGLTDAELVAWAQRAWTPDREDVVPAVRGEPATFGPADAPHIVLIDCGVKRNIIASLLRRAVRLTVLPYGVDAATVLALEPDGIVVSPGPGDPTRATDAIETVRVLATSGIPFFGICLGHQLLALAAGARTIKLTFGHRGGNHPVKEIPTGRVRITSQNHGYCVAHDSIPEQDGWQVWMINVNDGTVEGLRHRSLPVLTVQFHPEGSPGPQDSQDLFDAFVELVQQRWRARTARPIVLAGEGA
SIO_010081: TRD_RS01030
subclass of: SO_0000673
so part of: TRD_RS01030
location: complement(222754..223905)
location: region:222754-223905:-1
so has part: feature:222754-223905:-1:exon

WP_012641626.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:222754-223905:-1:exon

TRD_RS01035
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01035
old locus tag: trd_0214
so part of: sequence
location: complement(223814..225205)
location: region:223814-225205:-1
so has part: feature:223814-225205:-1:exon
subclass of: SO_0000010

position:223814:-1
position: 223814
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:225205:-1
position: 225205
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:223814-225205:-1:exon

TRD_RS01035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01035
old locus tag: trd_0214
EC number: 3.5.2.3
inference: COORDINATES: protein motif:HMM:TIGR00857.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: dihydroorotase
translation: MLRGGRLVDPSQGIDGEADLLVADGQVRAVGGRVPEPSGATVIDAAGLVVAPGFVDVHAHLRDPGFPEKETLETGSVAAAAGGFTTICCMPNTMPPLDTPERIRELVERARSLPVRIFPIGTISRGRRGEELADLVGMAEAGAIGFSDDGDSTRSARVMRQALQLSRLLGRPIMVHCEDPTLSAGGVMHEGGVSQQLGLPGIPAAAEEIVLARDLELARLTGGWLHVLHLTTARGLMLVRRAKREGNRVTVEVTPHHLLMTDEWVAGIRRFAGEMKPFPAGPCPDPNAKVNPPLRPEADALALRAGLRDGTIDLIATDHAPHHEQDKPPVLERAAFGMIGLELALPLLLRLVRTGALTVSELVEFLSCRPATLFGLPGGTLRPGSPADVVVFDPEEPWQVTRATLRSRSANTPLLGLTLRGRVRLTIVGGKVAYVDTAFADRCTRSGRRADLSGYSLRSTPPG
SIO_010081: TRD_RS01035
subclass of: SO_0000673
so part of: TRD_RS01035
location: complement(223814..225205)
location: region:223814-225205:-1
so has part: feature:223814-225205:-1:exon

WP_012641627.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:223814-225205:-1:exon

TRD_RS01040
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01040
old locus tag: trd_0215
so part of: sequence
location: complement(225611..226267)
location: region:225611-226267:-1
so has part: feature:225611-226267:-1:exon
subclass of: SO_0000010

position:225611:-1
position: 225611
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:226267:-1
position: 226267
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:225611-226267:-1:exon

TRD_RS01040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01040
old locus tag: trd_0215
EC number: 3.6.1.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012641628.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Maf family protein
translation: MTLVLASASPRRRALLAVLGIPFVVDPAAIDEPLPERHSHPERIARALARHKATVVAARRPGDWVLAADTVVVFRGRLLGKPESAEEAHAMLRLLRGRWHRVITAVALARGRRRWVDHTTTWVLMRQYSDEDITASIARGEPFDKAGGYAIQDPDLRPVESWRGCYCNVVGLSIWLTWRLLQQAGFPVSTPDERTLPPVCQQCPLAPAEVTSRTANRE
SIO_010081: TRD_RS01040
subclass of: SO_0000673
so part of: TRD_RS01040
location: complement(225611..226267)
location: region:225611-226267:-1
so has part: feature:225611-226267:-1:exon

WP_012641628.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:225611-226267:-1:exon

TRD_RS01045
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: rlmD
locus tag: TRD_RS01045
old locus tag: trd_0216
so part of: sequence
location: complement(226264..227484)
location: region:226264-227484:-1
so has part: feature:226264-227484:-1:exon
subclass of: SO_0000010

position:226264:-1
position: 226264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:227484:-1
position: 227484
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:226264-227484:-1:exon

TRD_RS01045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: rlmD
locus tag: TRD_RS01045
old locus tag: trd_0216
EC number: 2.1.1.190
inference: COORDINATES: protein motif:HMM:TIGR00479.1
GO function: GO:0008649 - rRNA methyltransferase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
translation: MPMGETLPTPRTLRTVPLHLEDMAYQGAAIGREDGRIVFAEYGIPGEDVLVAIEKDRKDHSLGRVIEVRTASPERVDPPCPYFGICGGCQWQHIRYEYQLVLKQAVVRQQLRRIGKFDDPPVLPTVPSPQPYGYRNHARFSVDGKGNLGYISRPGHGYRFLRIDRCLIMHPAINEVLRRLQERAHVKHQLMVRYGVNTGELLVHPDVSAIDPTIPSGQPAYHESLLGHRFRISASSFFQTNTAVAERLIQLVLERIAPTGNEVVVDAYAGVGTFAAFLAPRVARVIGIEESPSAVSDAQVNLDPFDNVEYVQAKVEHVLGKLAVRPDVVILDPPRVGCAPEALTGVLMLRPPRLIYVSCDPATLARDLRKLVDGGYRLLDVTPLDMFPQTYHIESVATLELAEGTP
SIO_010081: TRD_RS01045
subclass of: SO_0000673
so part of: TRD_RS01045
location: complement(226264..227484)
location: region:226264-227484:-1
so has part: feature:226264-227484:-1:exon

WP_012641629.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:226264-227484:-1:exon

TRD_RS01050
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: speD
locus tag: TRD_RS01050
old locus tag: trd_0217
so part of: sequence
location: 227907..228257
location: region:227907-228257:1
so has part: feature:227907-228257:1:exon
subclass of: SO_0000010

position:227907:1
position: 227907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:228257:1
position: 228257
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:227907-228257:1:exon

TRD_RS01050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: speD
locus tag: TRD_RS01050
old locus tag: trd_0217
EC number: 4.1.1.50
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012641630.1
GO function: GO:0004014 - adenosylmethionine decarboxylase activity [Evidence IEA]
GO process: GO:0008295 - spermidine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: adenosylmethionine decarboxylase
translation: MKSLGRHVIVELWGCQNIDSLQAVEEAIRDAVAATNATLRDLQVFPWEPYNGVSGIAILSESHLSIHTWPELGYAAVDVFTCGEHTNPEAAIPVLRERFRPQRMEVMQVSRGMIVD
SIO_010081: TRD_RS01050
subclass of: SO_0000673
so part of: TRD_RS01050
location: 227907..228257
location: region:227907-228257:1
so has part: feature:227907-228257:1:exon

WP_012641630.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:227907-228257:1:exon

TRD_RS01055
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: speE
locus tag: TRD_RS01055
old locus tag: trd_0218
so part of: sequence
location: 228250..229188
location: region:228250-229188:1
so has part: feature:228250-229188:1:exon
subclass of: SO_0000010

position:228250:1
position: 228250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:229188:1
position: 229188
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:228250-229188:1:exon

TRD_RS01055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: speE
locus tag: TRD_RS01055
old locus tag: trd_0218
EC number: 2.5.1.16
inference: COORDINATES: protein motif:HMM:NF002010.0
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: polyamine aminopropyltransferase
translation: MIDGGLWHTDDPEVPSQRVFLQVRDVLYRGTSPFQEIAVIETVLFGRALVLNNVLQTAERDEFCYHEMLVHPVMIAHPAPRRVLIIGGGDGGALRRVLQHPVEQVTMVEIDQQVVEACREHLWNIHRGAFDDPRVELRFEDGFAYVERRSATFDIIIVDGPDPLGPTPGMVLFSPDFYHGLADMLAPGGLVVQQTESPMLLPIQTAATHLHLREVLPIVRTYLTTVQSYDSFWSFTVASRDVDPAALDIETVAARLRERGIDDCQYYSPEIHWAAFRLPPFLRRFIEDSIALGRPADSHPLLPEAAARRATA
SIO_010081: TRD_RS01055
subclass of: SO_0000673
so part of: TRD_RS01055
location: 228250..229188
location: region:228250-229188:1
so has part: feature:228250-229188:1:exon

WP_012641631.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:228250-229188:1:exon

TRD_RS01060
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01060
old locus tag: trd_0219
so part of: sequence
location: complement(229339..230604)
location: region:229339-230604:-1
so has part: feature:229339-230604:-1:exon
subclass of: SO_0000010

position:229339:-1
position: 229339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:230604:-1
position: 230604
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:229339-230604:-1:exon

TRD_RS01060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01060
old locus tag: trd_0219
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAIQIETSSLPVLAQPTSLEEAGLDLQLVLELALKFLYAHGTQTARELVEALCLPFAGLLERALSQAKREELVEITGSNGIGELGYRYALTSKGHQRAQEFLARNGYIGPAPVPIEQYRQIVAAQSLRHLSVTPRMIKEALGPLVFTESVLDQIGQALNSGQAIFLFGKPGNGKTALAQRVVAMYGGAVFIPHAILVDTQIIRVFDRHHHHPLPEQPTSDRRWMLCARPLIQVGGELTLEQLDLIYDERNRLYEAPLQLRANNGVLLIDDFGRQRVPPRALLNRWIVPLEQRIDILTLHTGKQVEVPFEGLVIFSTNLQPTDLVDEAFLRRIPNKIHLANPTVQQFAEIFRRQCAELGVPFDQRGLAYLLRTYYVGKRELRACHPRDLLRALIGAARYLGQEPRLTPDLIDRACRSYFIDP
SIO_010081: TRD_RS01060
subclass of: SO_0000673
so part of: TRD_RS01060
location: complement(229339..230604)
location: region:229339-230604:-1
so has part: feature:229339-230604:-1:exon

WP_012641632.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:229339-230604:-1:exon

TRD_RS01065
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01065
old locus tag: trd_0220
so part of: sequence
location: complement(230715..231695)
location: region:230715-231695:-1
so has part: feature:230715-231695:-1:exon
subclass of: SO_0000010

position:230715:-1
position: 230715
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:231695:-1
position: 231695
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:230715-231695:-1:exon

TRD_RS01065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01065
old locus tag: trd_0220
inference: COORDINATES: protein motif:HMM:TIGR01730.1
GO function: GO:0005215 - transporter activity [Evidence IEA]
GO process: GO:0006810 - transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: efflux RND transporter periplasmic adaptor subunit
translation: MSERRRRSIPIILALVTVAVVAGLWLWLRRPSETVWVTQRADLTASVEVPGRLVSLRTLPLRASYETRVRLLAVAPGDRVRAGDIVAVLDDTPLLTRRAQAEQQLLQAEATLSQAEATDAPLEVRLRAEQQRREAARAFDEVTRRLADKYVLAPSDGIVTELLVSEGAPVTTGSILARLADTSVLGVSATIDEVDARFFAEATTVRVTVDALPGWQGRGEVVGRGESATQQAGIVGFPLLIRLAETASDLRPGMTATIHLDTIVRHDVLVVPERAIRTVGERAFVTVVTNGRREEREVTLGLRSSGLVEIAAGLAEGEQVLLPAGN
SIO_010081: TRD_RS01065
subclass of: SO_0000673
so part of: TRD_RS01065
location: complement(230715..231695)
location: region:230715-231695:-1
so has part: feature:230715-231695:-1:exon

WP_012641633.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:230715-231695:-1:exon

TRD_RS01070
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01070
old locus tag: trd_0221
so part of: sequence
location: complement(231688..234039)
location: region:231688-234039:-1
so has part: feature:231688-234039:-1:exon
subclass of: SO_0000010

position:231688:-1
position: 231688
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:234039:-1
position: 234039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:231688-234039:-1:exon

TRD_RS01070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01070
old locus tag: trd_0221
inference: COORDINATES: protein motif:HMM:NF024116.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter permease
translation: MPIALLAAFAMRSLRLRRIRATLAGASIALAVFAVVAIRSAGLALIEAQQRTYAATGQPDIVASVHGLTPGLVAALARRDGVLEAESRLIQSSRLTVDGRWRAVRLVGIERFDQLALDRPELVAGRWPERGEVVLDVTARHLLGIEIGTLVAFQANPGDPIHYARVSGFAWVPARPSATLLDQFTAYVPLRTLRQWTGSEAANTLLVRVDNPALAGRVASELQRFLAARQIPSSGWTVRDPDSFLGARELATLLLLLRAFAILGTLTALFIVANTTIGLVTEERPQLGTLRALGTTRSQLVSAYLAPHIVIGTAGSVVGLLAGTAGGYVLTAYLAGLAGLVLPPLRVAPSSVLLALGCGLGIAVAGALGPILHATRTPAAQLLRGDTRAPGDPPRWLTRSTGWLAQRSPILGMSTRDPFRRPLRAALTVLVTAVALAALLASQIVDHSLRAGIAALYDRYRADAWLLTNPPVPPTYAHRLANSPPVRAAEPWVLTSGAIGSVRTDVWGLPAKTSVYQPVMLAGQWLDDAPAAYPPRAVITGNLARRLDAQVGDVLPLDLGRQRLPIQVSGIVDDESTYLGATAIGKVFLDHQILTRLLGRDDRAALYALRFWDTVRPSDSLTTVEQYARTLRPLTLLMAEDRAATERVLAVLTILARIVVLVITIATVFGITNALLLDLTERRREFGILRTLGTERATLVLLLAGQTLVIVVFGALLAVPVGFLLAVNILALVSRQLFAIPLALPSTVVLVLIAAVALTTALAVLIPALLAVRLRPVEVLRYE
SIO_010081: TRD_RS01070
subclass of: SO_0000673
so part of: TRD_RS01070
location: complement(231688..234039)
location: region:231688-234039:-1
so has part: feature:231688-234039:-1:exon

WP_012641634.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:231688-234039:-1:exon

TRD_RS01075
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01075
old locus tag: trd_0223
so part of: sequence
location: 234320..236191
location: region:234320-236191:1
so has part: feature:234320-236191:1:exon
subclass of: SO_0000010

position:234320:1
position: 234320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:236191:1
position: 236191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:234320-236191:1:exon

TRD_RS01075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01075
old locus tag: trd_0223
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015922206.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: peptide ABC transporter substrate-binding protein
translation: MQELERLREEIASGQATRREVLRRAAALGLSAPVIASLLAACARQEATPTAAPAAQTPAAAATPTPAAAATPAAQATPTQAAAKRGGGGTLRLLWWQAPTIINPHLAQGTKDFDASNIVLEALAYFDSEDKLVPRLAEEVPSVEKGTLDPEGRWVIWKLRKGVKWHDGQPFTAKDVKFTYEYVIDPATTATTIASYRAIESVEIVDDYTVKVTFKNPNPAWFEPFVGGFGLIVPEHILRDYTGEKARNAPFNLKPIGTGPYKVADFKPGDVVIYEINQDYWQEGKPYFDRVELKGGGDATSAARAVLQTGEVDWAWNLQVEAQVLLQLEKAGQGKLIITPGPSTERIMVNFADPWTEKDGARAEPDVPHPFLTNKNIRQAIALAIRRDVIAEQLYGPAGQVTANNLNAPARFKHPELKWEFNLEKAAQLLDEAGAKDTNGDGVREYNGKPLQILYQTSINSIRQRTQEIVKAEMEKIGFKVELKSIDASVFFSSDPGNPDTYGHFYADLEMYTNGPSNPFPLNWARRYHSQEVARKANNWSGVNITRYQNPEMDKVLDQLATEMNPDKQTELFRQVNWISVTDVVEIPLVHRNSVSAATKNLTGYKPSTWASDVWDIGDWRRE
SIO_010081: TRD_RS01075
subclass of: SO_0000673
so part of: TRD_RS01075
location: 234320..236191
location: region:234320-236191:1
so has part: feature:234320-236191:1:exon

WP_012641636.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:234320-236191:1:exon

TRD_RS01080
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01080
old locus tag: trd_0224
so part of: sequence
location: complement(236244..236945)
location: region:236244-236945:-1
so has part: feature:236244-236945:-1:exon
subclass of: SO_0000010

position:236244:-1
position: 236244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:236945:-1
position: 236945
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:236244-236945:-1:exon

TRD_RS01080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01080
old locus tag: trd_0224
inference: COORDINATES: protein motif:HMM:NF012235.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter ATP-binding protein
translation: MSHPPLVRLDCISKVYRDGQREIVALDQVTLDITAGEWVAIVGPSGCGKSTLLNLIAGIDRPTSGRVIIAGTDLAQLDEEALARWRRSHVGIVFQFFQLLPTLTALENVQLPLVLAGRRDAPQRARELLERVGLAYRAHRLPSELSGGEQQRVAIARALANDPPLLLADEPTGNLDSASGETVLELFRTAWHHGTTILLVTHDREVAARAQRIVELRDGRVVADSASRVSPAR
SIO_010081: TRD_RS01080
subclass of: SO_0000673
so part of: TRD_RS01080
location: complement(236244..236945)
location: region:236244-236945:-1
so has part: feature:236244-236945:-1:exon

WP_012641637.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:236244-236945:-1:exon

TRD_RS01085
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01085
old locus tag: trd_0225
so part of: sequence
location: complement(236968..237228)
location: region:236968-237228:-1
so has part: feature:236968-237228:-1:exon
subclass of: SO_0000010

position:236968:-1
position: 236968
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:237228:-1
position: 237228
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:236968-237228:-1:exon

TRD_RS01085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01085
old locus tag: trd_0225
inference: COORDINATES: protein motif:HMM:NF016141.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GlsB/YeaQ/YmgE family stress response membrane protein
translation: MLPAEPRSLLGWLVIGFLAGWLAGLLTRGRGFGCLGNIAIGLLGAVVGGYLFQLLGVRGPAGFLGSLLVALVGAGVLLLVVNLMRR
SIO_010081: TRD_RS01085
subclass of: SO_0000673
so part of: TRD_RS01085
location: complement(236968..237228)
location: region:236968-237228:-1
so has part: feature:236968-237228:-1:exon

WP_012641638.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:236968-237228:-1:exon

TRD_RS01090
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: trmD
locus tag: TRD_RS01090
old locus tag: trd_0226
so part of: sequence
location: complement(237215..238021)
location: region:237215-238021:-1
so has part: feature:237215-238021:-1:exon
subclass of: SO_0000010

position:237215:-1
position: 237215
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:238021:-1
position: 238021
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:237215-238021:-1:exon

TRD_RS01090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: trmD
locus tag: TRD_RS01090
old locus tag: trd_0226
EC number: 2.1.1.228
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012641639.1
GO function: GO:0052906 - tRNA (guanine(37)-N(1))-methyltransferase activity [Evidence IEA]
GO process: GO:0008033 - tRNA processing [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tRNA (guanosine(37)-N1)-methyltransferase TrmD
translation: MRFDVFTIFPGMFTGFLTESILKRAQQAGLIEIAIHNIRDWTTDKHRTVDDTPYGGGPGMVMMAPPIVHAVESVLGQEQNSTPIIIMSPSGELFTQDIARQLACFPRLALICGRYEGIDDRVRIILRARELSIGDYVLTGGELAAAVVIDVVSRLVPGVIDPESLAEESHNSGLLEYPQYTRPPIFRGLGVPEILLSGNHAKIAEWRRMMALCRTAARRPDLLARAALTPRDHELLQRCPPDPFAHQGPVYEGDQLERPEGGEQGASR
SIO_010081: TRD_RS01090
subclass of: SO_0000673
so part of: TRD_RS01090
location: complement(237215..238021)
location: region:237215-238021:-1
so has part: feature:237215-238021:-1:exon

WP_012641639.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:237215-238021:-1:exon

TRD_RS01095
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01095
old locus tag: trd_0227
so part of: sequence
location: complement(238078..239394)
location: region:238078-239394:-1
so has part: feature:238078-239394:-1:exon
subclass of: SO_0000010

position:238078:-1
position: 238078
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:239394:-1
position: 239394
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:238078-239394:-1:exon

TRD_RS01095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01095
old locus tag: trd_0227
inference: COORDINATES: protein motif:HMM:NF014069.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HD-GYP domain-containing protein
translation: MTVQRATVDLRRLLPILIPLSAANLAAWVYLTRLWPPDLTPRTLFTAVIFVALIVLAEQLAIDLPIPHARITVSVSSAITFAGVLTLGPTLGILVAVVGTFLDDLIDRREPLKILANANNFALQGVVAGPLYFTLADEGSPLASMRNFLAMLLAAVVSSSFQTVLLALVLSLASGTSAWYLWRGMARGLLVEFLALPALGSLFPILAREHPLALVLMVIPLVGPYLAFRDYRQLHHETQSTFELLADLLDRRDPYTASHSQRVAHLTMLILDEFPELSADERDAIIAAARIHDLGKVATSDLILRKPGRLTDDEFAVIQRHPVDGSEILRHLTPYRHIVEIVRHHHERWDGRGYPDGLAGEAIPFGARVIAVADTYDAMTTDRPYRRALSHEEALAELQRGAGTQFDPVVVAAFERALARAREAVREKTAPSMSAPVS
SIO_010081: TRD_RS01095
subclass of: SO_0000673
so part of: TRD_RS01095
location: complement(238078..239394)
location: region:238078-239394:-1
so has part: feature:238078-239394:-1:exon

WP_012641640.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:238078-239394:-1:exon

TRD_RS01100
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: rfbB
locus tag: TRD_RS01100
old locus tag: trd_0229
so part of: sequence
location: 240059..241093
location: region:240059-241093:1
so has part: feature:240059-241093:1:exon
subclass of: SO_0000010

position:240059:1
position: 240059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:241093:1
position: 241093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:240059-241093:1:exon

TRD_RS01100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: rfbB
locus tag: TRD_RS01100
old locus tag: trd_0229
EC number: 4.2.1.46
inference: COORDINATES: protein motif:HMM:TIGR01181.1
GO function: GO:0008460 - dTDP-glucose 4,6-dehydratase activity [Evidence IEA]
GO process: GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: dTDP-glucose 4,6-dehydratase
translation: MSDAVFRRILITGGAGFIGSHFVRLALAAGIPSVVVLDKLTYAGSLLNLEEVLDDPRVRFLEGDIADPAAVAEAMAGCDAVVNFAAETHVDRSLLEPAAFIRTNVWGTMVLLEQALRLGVGRFLHVSTDEVYGEVLSGSVSEDEPLRPRNPYAASKAAAEHFVFAYWTSYGLPVLVTRGCNTYGPYQHPEKFIPLAITNLLTGRPIPLYGDGLHERDWLYVEDHCRAIWTVLVRGEPGQAYNIGAGQHRPNIAVARALVRLLGADPSAIVHVADRPGHDRRYAVDWSRLRALGWRPMVDFEDGLARTVAWYRARTDWWSARRDAAFAAYYARNYQGREGYRNQP
SIO_010081: TRD_RS01100
subclass of: SO_0000673
so part of: TRD_RS01100
location: 240059..241093
location: region:240059-241093:1
so has part: feature:240059-241093:1:exon

WP_012641642.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:240059-241093:1:exon

TRD_RS01105
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01105
old locus tag: trd_0230
so part of: sequence
location: 241090..241803
location: region:241090-241803:1
so has part: feature:241090-241803:1:exon
subclass of: SO_0000010

position:241090:1
position: 241090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:241803:1
position: 241803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:241090-241803:1:exon

TRD_RS01105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01105
old locus tag: trd_0230
EC number: 3.1.3.16
inference: COORDINATES: protein motif:HMM:NF018884.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PP2C family protein-serine/threonine phosphatase
translation: MTLTIELAVAKTHRAGNRESGDTVELIERPGGGLSVVLVDAQGSGMAAKLLSLQVAGRVLTLLNEGVRDGAAARAAHDFLFTLRGGRVSAELDIVSVDLASRTLVVTRNSEAPLVLIRDSDVEIVASTGGRIGLYRHTRPSVTEWTLEPGLTVIVVSDGVAHAGAHAGKTIDLATLARQESVACETAQQLADRVLSAALAADRGHPRDDMTVVVLRLQAGGVRQPVRRLSLTFPLTE
SIO_010081: TRD_RS01105
subclass of: SO_0000673
so part of: TRD_RS01105
location: 241090..241803
location: region:241090-241803:1
so has part: feature:241090-241803:1:exon

WP_012641643.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:241090-241803:1:exon

TRD_RS01110
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01110
old locus tag: trd_0231
so part of: sequence
location: 241858..242208
location: region:241858-242208:1
so has part: feature:241858-242208:1:exon
subclass of: SO_0000010

position:241858:1
position: 241858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:242208:1
position: 242208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:241858-242208:1:exon

TRD_RS01110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01110
old locus tag: trd_0231
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRVVLVGPCGAGKSTIAAELAARGVEAIAVGQEHSIIRDLWRRPAADLVVFLDASLETVRERRGADWPAWLYEEEQRRLSEARAHADLVLDTGRLTVGEVVERILRALEKAGQHGT
SIO_010081: TRD_RS01110
subclass of: SO_0000673
so part of: TRD_RS01110
location: 241858..242208
location: region:241858-242208:1
so has part: feature:241858-242208:1:exon

WP_012641644.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:241858-242208:1:exon

TRD_RS01115
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01115
old locus tag: trd_0232
so part of: sequence
location: 242198..243919
location: region:242198-243919:1
so has part: feature:242198-243919:1:exon
subclass of: SO_0000010

position:242198:1
position: 242198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:243919:1
position: 243919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:242198-243919:1:exon

TRD_RS01115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01115
old locus tag: trd_0232
inference: COORDINATES: protein motif:HMM:NF012706.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: peptide ABC transporter substrate-binding protein
translation: MGRERLLSLLLAITVLLTGCRFSLPLSRSATPTPDFVLPVEASPTPPAPATLSVTATLLPGAVLTAPPVPTPPSSSAEQVLILAGTPEGPLTLDPALVRDVESAFVVQQLFRGLVRFDRALVPVPELAERIEIGPDGRSYTVRLRADARFHDGDPITAADVKYSLERACDPALADGDGRALPAWGFLRDLVGAQARMLGRRSDVPGIEVVDERTLRLHLVEPSPTFLLRLALPVASVVKRDAVERGPDWWRQPVGSGPFRLVRWTDEEIVLGRHPQYRPAPAYLREVRIRIGPAALSPLNQYERGQLDVAAVPVWAVDRLTAPESPYRDQLIAQPLLGGTYVFFNPGVPPLDDLVVRRALIQAFPRAKVAGVTLQGKVPLAQGLIPEGMPGGPWEATVLPYDPGEARRVLTGRSLRVEVASAGSDVAIMLGQVWRRELGIEVEVLQYDWPDYLTELDARRLPIFVFSWVADYPDPEAVIDALFAEESPNRPIDYRNAAVQELLAAARRATDPQERHALLLAAQQQILDDVVVLPLTFDVEYLLVAPRVRDLPVTPLGILGLERVWIAPERAAR
SIO_010081: TRD_RS01115
subclass of: SO_0000673
so part of: TRD_RS01115
location: 242198..243919
location: region:242198-243919:1
so has part: feature:242198-243919:1:exon

WP_012641645.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:242198-243919:1:exon

TRD_RS01120
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01120
old locus tag: trd_0233
so part of: sequence
location: 243949..244833
location: region:243949-244833:1
so has part: feature:243949-244833:1:exon
subclass of: SO_0000010

position:243949:1
position: 243949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:244833:1
position: 244833
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:243949-244833:1:exon

TRD_RS01120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01120
old locus tag: trd_0233
inference: COORDINATES: protein motif:HMM:NF012792.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GNAT family N-acetyltransferase
translation: MVGSTLIVPLEPEDLPRLRLKWGTRYGLRDVAHLVREAPGLCLWAPTTGEYVLAGPWRHREEIVALLEVTTGNLTDQLIESLARAATEQGKQLLVATEQEERRSGSFYQRLGFELIEEILVYEMVLYSTPPGPARLRFERVVLEDPFAMGELLDLDHDAFAWLWWNSEQEFDAYMSDPRVDVYLGRERDGTPVSYVGITRLRGWGHLDRLAVAPAFQGRGYGYESLIWAAQVLAARGAHRIALSTQASNQRSRQLYERFGFRRIPELDYRLYGRWLADPIEAWDRRSWRGNGGA
SIO_010081: TRD_RS01120
subclass of: SO_0000673
so part of: TRD_RS01120
location: 243949..244833
location: region:243949-244833:1
so has part: feature:243949-244833:1:exon

WP_226980705.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:243949-244833:1:exon

TRD_RS01125
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: aroC
locus tag: TRD_RS01125
old locus tag: trd_0234
so part of: sequence
location: 244839..245906
location: region:244839-245906:1
so has part: feature:244839-245906:1:exon
subclass of: SO_0000010

position:244839:1
position: 244839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:245906:1
position: 245906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:244839-245906:1:exon

TRD_RS01125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: aroC
locus tag: TRD_RS01125
old locus tag: trd_0234
EC number: 4.2.3.5
inference: COORDINATES: protein motif:HMM:TIGR00033.1
GO function: GO:0004107 - chorismate synthase activity [Evidence IEA]
GO process: GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chorismate synthase
translation: MGSTFGRLFRVTTWGESHGPALGVVVDGCPAGLELNEEIIQRDLDRRRVGQSEVTSPRQERDRVTILSGVFEGKTTGAPISLITYNADADSSKYEPLRDVFRPGHADYTYWVKYGHRDHRGGGRSSARETWGRVAAGAIARQLLRTVAGVEVYGFVRELGGITIETFDRDEIDRNPVRCPDPVAAQKMVAAILEAKEQKTSVGGIVEVRARNVPPGLGEPTMDKLDALIGYAMLSIPAVKGVEIGDGFAAARLRGHEHNDPFILDNGRVRTLTNHAGGMLGGISTGEEIIVRLAVKPTSSIARPQRTVDIHGNERTIVVEGRHDPSICPRVVPVAEAMLLLVLADCYLMNRAARV
SIO_010081: TRD_RS01125
subclass of: SO_0000673
so part of: TRD_RS01125
location: 244839..245906
location: region:244839-245906:1
so has part: feature:244839-245906:1:exon

WP_012641647.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:244839-245906:1:exon

TRD_RS01130
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: aroA
locus tag: TRD_RS01130
old locus tag: trd_0235
so part of: sequence
location: complement(245911..247215)
location: region:245911-247215:-1
so has part: feature:245911-247215:-1:exon
subclass of: SO_0000010

position:245911:-1
position: 245911
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:247215:-1
position: 247215
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:245911-247215:-1:exon

TRD_RS01130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: aroA
locus tag: TRD_RS01130
old locus tag: trd_0235
EC number: 2.5.1.19
inference: COORDINATES: protein motif:HMM:NF012497.2
GO function: GO:0003866 - 3-phosphoshikimate 1-carboxyvinyltransferase activity [Evidence IEA]
GO process: GO:0009423 - chorismate biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 3-phosphoshikimate 1-carboxyvinyltransferase
translation: MTLHRTYPPRLPIRPAEQPVDAIVRLPGSKSLTNRALVLAALADGVSVLEGALLSEDSWVMVDSLRRLGIPVDVDEPAERMIVQGKGGTLPATRAELFVGNSGTTARFLTAMTALGHGEYLIDGVPRMRERPIQPLLDALAQLGVQAESLLGTGCPPVRVRSYGLAGGTIRLRGDISSQYLSALLMIGPCTRDGLRIELESPLVSVPYVEMTLAVMADFGAIATHEHAQVFHVPGNQRYRSRTYAIEPDASAASYFFALAAATAGRIRVVNLGTRSRQGDVQFVDLLERMGCTVIREPDALTVIGKRPLRGIEADMNAISDTVPTLAALAPLADGPVIIRNVQHIRYKETDRIAAVANELRRLGITVEEFPDGLRIEPGPVQPAVIRTYGDHRMAMSFAILGCAVPGLEIDDPGCVAKTFPDFFERLEAALGRR
SIO_010081: TRD_RS01130
subclass of: SO_0000673
so part of: TRD_RS01130
location: complement(245911..247215)
location: region:245911-247215:-1
so has part: feature:245911-247215:-1:exon

WP_012641648.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:245911-247215:-1:exon

TRD_RS01135
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01135
old locus tag: trd_0236
so part of: sequence
location: complement(247226..247681)
location: region:247226-247681:-1
so has part: feature:247226-247681:-1:exon
subclass of: SO_0000010

position:247226:-1
position: 247226
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:247681:-1
position: 247681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:247226-247681:-1:exon

TRD_RS01135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01135
old locus tag: trd_0236
inference: COORDINATES: protein motif:HMM:NF013103.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: dTDP-4-dehydrorhamnose 3,5-epimerase family protein
translation: MIHGVEIKRLVTHVDERGSLTELIRCDDPFFEKFGQCYVSVSWPGVIRAWHWHKKQTDYFVCIRGMIKVPLFDLRPESPTYRELNEFFLGDDNRIVLKIPPGVAHGFKNIGTEPCYLLNFPTEPYDADDPDEYRLPYDTPEIPYSWEIKYR
SIO_010081: TRD_RS01135
subclass of: SO_0000673
so part of: TRD_RS01135
location: complement(247226..247681)
location: region:247226-247681:-1
so has part: feature:247226-247681:-1:exon

WP_012641649.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:247226-247681:-1:exon

TRD_RS01140
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01140
old locus tag: trd_0237
so part of: sequence
location: complement(247703..248512)
location: region:247703-248512:-1
so has part: feature:247703-248512:-1:exon
subclass of: SO_0000010

position:247703:-1
position: 247703
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:248512:-1
position: 248512
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:247703-248512:-1:exon

TRD_RS01140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01140
old locus tag: trd_0237
EC number: 2.1.-.-
inference: COORDINATES: protein motif:HMM:NF024880.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: class I SAM-dependent methyltransferase
translation: MGETIDAYEIIADYYDLEFARFSDDIEVYLAFAQRTGDPILEIGCGTGRLLAPLARSGYTVHGVDRSPAMLARARERLRAEGLEHVQLFQADAVDLRPLADGFYRLAIIALNGFLHLLDRTAQQRALAELHRVMTTGGLLLLDLLHPTPAQLQALEQPLSWDGNWRLPDGSRLDRFASRSVHPSEQTITTTLFYDRTDAHSGQVTRRVVSYKLRFVHRFELELLLEQAGFAVEAIYGSYDLDPLTDESPQMFVVAQRQLSPAILAPRRA
SIO_010081: TRD_RS01140
subclass of: SO_0000673
so part of: TRD_RS01140
location: complement(247703..248512)
location: region:247703-248512:-1
so has part: feature:247703-248512:-1:exon

WP_012641650.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:247703-248512:-1:exon

TRD_RS01145
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: smpB
locus tag: TRD_RS01145
old locus tag: trd_0238
so part of: sequence
location: 248683..249165
location: region:248683-249165:1
so has part: feature:248683-249165:1:exon
subclass of: SO_0000010

position:248683:1
position: 248683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:249165:1
position: 249165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:248683-249165:1:exon

TRD_RS01145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: smpB
locus tag: TRD_RS01145
old locus tag: trd_0238
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006189841.1
GO function: GO:0003723 - RNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SsrA-binding protein SmpB
translation: MSKGTAKSREGEKVIAVNRKAYHDYFIEEELEAGIQLTGSEIKSIRAGRVNLRDAYARIEDGELWLIGMHVSPYPGASGKHQHDPTRPRKLLVHKRELDYLRGKLEKRGYTLVPLRLVIRRGLAKIDLGLARGKKQYDKREAIAEREARREIERAISPRW
SIO_010081: TRD_RS01145
subclass of: SO_0000673
so part of: TRD_RS01145
location: 248683..249165
location: region:248683-249165:1
so has part: feature:248683-249165:1:exon

WP_012641651.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:248683-249165:1:exon

TRD_RS14035
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: ssrA
locus tag: TRD_RS14035
old locus tag: trd_0239
so part of: sequence
location: 249350..249702
location: region:249350-249702:1
so has part: feature:249350-249702:1:exon
subclass of: SO_0000659

position:249350:1
position: 249350
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:249702:1
position: 249702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:249350-249702:1:exon

TRD_RS14035
type: Transfer Messenger RNA
subclass of: SO_0000584
RO_0002162: 309801
gene: ssrA
locus tag: TRD_RS14035
old locus tag: trd_0239
product: transfer-messenger RNA
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF00023
inference: COORDINATES: profile:INFERNAL:1.1.4
note: Derived by automated computational analysis using gene prediction method: cmsearch.
SIO_010081: TRD_RS14035
subclass of: SO_0000673
so part of: TRD_RS14035
location: 249350..249702
location: region:249350-249702:1
so has part: feature:249350-249702:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:249350-249702:1:exon

TRD_RS14560
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS14560
old locus tag: trd_0240
so part of: sequence
location: complement(250101..250325)
location: region:250101-250325:-1
so has part: feature:250101-250325:-1:exon
subclass of: SO_0000010

position:250101:-1
position: 250101
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:250325:-1
position: 250325
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:250101-250325:-1:exon

TRD_RS14560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS14560
old locus tag: trd_0240
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGYCPRCGEHTPYREEDRERTMELLPIRIPVHSRIVPIPPDVPDGTTIRYAGCLFSVRRVGEAYELTLLRVGHV
SIO_010081: TRD_RS14560
subclass of: SO_0000673
so part of: TRD_RS14560
location: complement(250101..250325)
location: region:250101-250325:-1
so has part: feature:250101-250325:-1:exon

WP_143714585.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:250101-250325:-1:exon

TRD_RS01150
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01150
old locus tag: trd_0241
so part of: sequence
location: complement(250340..250693)
location: region:250340-250693:-1
so has part: feature:250340-250693:-1:exon
subclass of: SO_0000010

position:250340:-1
position: 250340
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:250693:-1
position: 250693
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:250340-250693:-1:exon

TRD_RS01150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01150
old locus tag: trd_0241
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTRTVWRLIKGLGVALAVMVLSILPPGLHLVLGPLSPLIGGFAAGVVGELRAGEAFVLGLVEATAAGLVVGFILPVLAHLELGTATLWFFGVGAAIYAGTLSGVAAYFGGQQGQRAR
SIO_010081: TRD_RS01150
subclass of: SO_0000673
so part of: TRD_RS01150
location: complement(250340..250693)
location: region:250340-250693:-1
so has part: feature:250340-250693:-1:exon

WP_012641653.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:250340-250693:-1:exon

TRD_RS01155
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01155
old locus tag: trd_0242
so part of: sequence
location: complement(250690..251166)
location: region:250690-251166:-1
so has part: feature:250690-251166:-1:exon
subclass of: SO_0000010

position:250690:-1
position: 250690
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:251166:-1
position: 251166
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:250690-251166:-1:exon

TRD_RS01155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01155
old locus tag: trd_0242
inference: COORDINATES: protein motif:HMM:NF013995.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: EVE domain-containing protein
translation: MAEPQYWILVGSAENLEATQAHGFTVQGFKSRHRKKAEAMRPGDRLVYYVTGIQGFAAIARVTSDAFEDHTPIWKSKDPKKAAEDYPWRVQIEPEIALPPGVYLPAEDIALQLHHVQKWPKDHWRLAFQGQLHRIDEHDYELIRTALVQAANRQSVAP
SIO_010081: TRD_RS01155
subclass of: SO_0000673
so part of: TRD_RS01155
location: complement(250690..251166)
location: region:250690-251166:-1
so has part: feature:250690-251166:-1:exon

WP_012641654.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:250690-251166:-1:exon

TRD_RS01160
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01160
old locus tag: trd_0244
so part of: sequence
location: complement(251598..251990)
location: region:251598-251990:-1
so has part: feature:251598-251990:-1:exon
subclass of: SO_0000010

position:251598:-1
position: 251598
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:251990:-1
position: 251990
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:251598-251990:-1:exon

TRD_RS01160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01160
old locus tag: trd_0244
inference: COORDINATES: protein motif:HMM:NF021536.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2267 domain-containing protein
translation: MQFDEFIGKVQHRARLASRGEAERVTRAVLETLAERLAGGEAKDLAAQLPMIVKDYILEYPHAGEGRHMSLKEFYERVAERLHAPMPEAAFWARAVMSVVQEAVSAGEIEDVKHQLGPDYAPLFEWEGPR
SIO_010081: TRD_RS01160
subclass of: SO_0000673
so part of: TRD_RS01160
location: complement(251598..251990)
location: region:251598-251990:-1
so has part: feature:251598-251990:-1:exon

WP_041435889.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:251598-251990:-1:exon

TRD_RS01165
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01165
old locus tag: trd_0245
so part of: sequence
location: complement(252176..253030)
location: region:252176-253030:-1
so has part: feature:252176-253030:-1:exon
subclass of: SO_0000010

position:252176:-1
position: 252176
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:253030:-1
position: 253030
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:252176-253030:-1:exon

TRD_RS01165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01165
old locus tag: trd_0245
inference: COORDINATES: protein motif:HMM:NF016777.2
GO function: GO:0016787 - hydrolase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: amidohydrolase family protein
translation: MPIAGVPITDTHVHFWDIERSDLYWMTPDLVEQLRPLRRSFTPDDLDPQRLAAGVDRIVIVQAARSEWDHQWWFSLAERYPWIVAVVGWVDLAAPEVDQQLDRLASHPAFRGVRATAENVPDPDWLASPAVQRGIAAVAERGLTLDLLVRVEHLPHVPRLAERFPDLTLVVDHLAKPPIASGDLQLWRERMAALVPYPTIWCKLSGLLTEAGPRPTVETLRPVVDFALDRFGPQRLLWGSDWPVATLAADYLSTFRTYEALTAGLTTEERAAIFGGNAQRVYRL
SIO_010081: TRD_RS01165
subclass of: SO_0000673
so part of: TRD_RS01165
location: complement(252176..253030)
location: region:252176-253030:-1
so has part: feature:252176-253030:-1:exon

WP_012641657.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:252176-253030:-1:exon

TRD_RS01170
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01170
old locus tag: trd_0246
so part of: sequence
location: complement(253002..254018)
location: region:253002-254018:-1
so has part: feature:253002-254018:-1:exon
subclass of: SO_0000010

position:253002:-1
position: 253002
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:254018:-1
position: 254018
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:253002-254018:-1:exon

TRD_RS01170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01170
old locus tag: trd_0246
inference: COORDINATES: protein motif:HMM:NF012472.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: aldo/keto reductase
translation: MMSLPRRVLGRTGLEVSSVCAGCAPLGDMPEAFGYRVPEEQALATLRAIFSSPITFLDTAAAYGDGESERRIGIVLRELGGLPPGYVLATKADRDLATGRFDAEQVRRSVQRSLRLLGLERLQLVYFHDPEHAGLSVAEAMAPGGPVEALLALRDAGVIEHVGVAAGPIDMLIAYIETGVFEVVITHNRYTLLNRTAEPLIQRANELGVAVVNAAPYGSGLLAKGPSAFPRYAYREARPDEIERARTIEAVCAHYGVPLAAAALQFSLRDPRISATIVGMSRPERVTQTIQFATWPIPDALWDELNQVEPLPYDPQTGQLVATGEGGSEDADRRRADH
SIO_010081: TRD_RS01170
subclass of: SO_0000673
so part of: TRD_RS01170
location: complement(253002..254018)
location: region:253002-254018:-1
so has part: feature:253002-254018:-1:exon

WP_012641658.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:253002-254018:-1:exon

TRD_RS01175
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01175
old locus tag: trd_0247
so part of: sequence
location: complement(254015..254395)
location: region:254015-254395:-1
so has part: feature:254015-254395:-1:exon
subclass of: SO_0000010

position:254015:-1
position: 254015
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:254395:-1
position: 254395
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:254015-254395:-1:exon

TRD_RS01175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01175
old locus tag: trd_0247
inference: COORDINATES: protein motif:HMM:NF017174.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: L-rhamnose mutarotase
translation: MKCYGLTLCLRDDPDAIAAYIQYHQAVWPQVCARIREVGIHTMRIFLRGRRLFMYIETDDAFDLARDFSRVNEDPVSAEWNRLMATLQERAPEANPDEWWAPMELVFDLDWPQHRHGLAQEREPRS
SIO_010081: TRD_RS01175
subclass of: SO_0000673
so part of: TRD_RS01175
location: complement(254015..254395)
location: region:254015-254395:-1
so has part: feature:254015-254395:-1:exon

WP_012641659.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:254015-254395:-1:exon

TRD_RS01180
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01180
old locus tag: trd_0248
so part of: sequence
location: complement(254409..255161)
location: region:254409-255161:-1
so has part: feature:254409-255161:-1:exon
subclass of: SO_0000010

position:254409:-1
position: 254409
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:255161:-1
position: 255161
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:254409-255161:-1:exon

TRD_RS01180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01180
old locus tag: trd_0248
EC number: 1.1.1.47
inference: COORDINATES: protein motif:HMM:NF005559.1
GO function: GO:0016491 - oxidoreductase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glucose 1-dehydrogenase
translation: MQLHDRIALVTGAGSGIGRAIAERFASAGALVIAADLDATAAEETARRAPERIVPDHVDVRDEASVRTLMERTLDRFGRLDILVNNAGIGTTKDLVETDLAEWENVFAVNVRGVFLCCKYALPSMLARRSGVIINIGSVAGLIGIPKRAAYCASKGAVVTLTKQIAIAYVREGIRCNCICPGTVDSPWVERLVAREPDPVAARRALEARQPMGRLVQPEEVAAAALYLASDEAAAVTGSILVIDGGWLAQ
SIO_010081: TRD_RS01180
subclass of: SO_0000673
so part of: TRD_RS01180
location: complement(254409..255161)
location: region:254409-255161:-1
so has part: feature:254409-255161:-1:exon

WP_012641660.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:254409-255161:-1:exon

TRD_RS01185
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01185
old locus tag: trd_0249
so part of: sequence
location: complement(255181..256206)
location: region:255181-256206:-1
so has part: feature:255181-256206:-1:exon
subclass of: SO_0000010

position:255181:-1
position: 255181
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:256206:-1
position: 256206
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:255181-256206:-1:exon

TRD_RS01185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01185
old locus tag: trd_0249
inference: COORDINATES: protein motif:HMM:NF012738.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: carbohydrate ABC transporter permease
translation: MALRWQTSPTRPGPLAALVSYAILSLWAAVVLFPLYWLAITAFKLPVHVNEGPTYLPFVDFQPSLHAWHYILVDLGNDTLRPYLNTVIVGGTSSILTLLLGAAATYGLSRFTYRVRLASVVVFLAGAILAGIGIQLGLPWPLAVAGALGAFVLARATALRRAAGPQLGNADIAFWMISQRMLPPVAIVIPIYILFQRLGMLDTRTALVVSYVAANLPIAVWLLRDYFHTIPIELEESAAIDGANRYQILWRIVLPLALPGLVATFLFIFVLAWNEYLLALFLSSAKAQTMPLLVAAQNATRGPQWWYMSVLILLMIAPVIALALVLERYIARGLLLGAVRG
SIO_010081: TRD_RS01185
subclass of: SO_0000673
so part of: TRD_RS01185
location: complement(255181..256206)
location: region:255181-256206:-1
so has part: feature:255181-256206:-1:exon

WP_012641661.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:255181-256206:-1:exon

TRD_RS01190
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01190
old locus tag: trd_0250
so part of: sequence
location: complement(256217..257395)
location: region:256217-257395:-1
so has part: feature:256217-257395:-1:exon
subclass of: SO_0000010

position:256217:-1
position: 256217
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:257395:-1
position: 257395
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:256217-257395:-1:exon

TRD_RS01190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01190
old locus tag: trd_0250
inference: COORDINATES: protein motif:HMM:NF012738.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: sugar ABC transporter permease
translation: MRQTRPSVLPPRTGDAVAAPTRRIPLSRERVVSWADQQAGAVLVLPAVLVILVLSIFPLLFSLYLSLSRFQPVSGGFEIHFRGLANYRKLFVGSEQQHFLGQLARLDTAGWLFFLATGALTVFLLGRALRSGPLTFPRLLGHGTVALGLLLALWLISRTVVSGGRPGTLVVTWVYVFGGVALQFLVGLLLAALCAQQLPGRRFFRVVFLLPMMITPVGVAYTFRMLTDTGKGPFAPIANWLGYANVSWVNDPWGARIAVMIGDLWQWTPFMFIVLLAALESQSPEPIEAAIVDGANRWQIFWHITLPQIAPVASTVILIRLIEAFKIFDMPNVLTGGGPGTATESLTLHAYVLWRSLDYGTSAAVAYTLLFVVTFVGIAYVRLLHRRVSEAL
SIO_010081: TRD_RS01190
subclass of: SO_0000673
so part of: TRD_RS01190
location: complement(256217..257395)
location: region:256217-257395:-1
so has part: feature:256217-257395:-1:exon

WP_012641662.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:256217-257395:-1:exon

TRD_RS01195
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01195
old locus tag: trd_0251
so part of: sequence
location: complement(257418..258953)
location: region:257418-258953:-1
so has part: feature:257418-258953:-1:exon
subclass of: SO_0000010

position:257418:-1
position: 257418
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:258953:-1
position: 258953
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:257418-258953:-1:exon

TRD_RS01195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01195
old locus tag: trd_0251
inference: COORDINATES: protein motif:HMM:NF024808.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: extracellular solute-binding protein
translation: MTRKLSRRQFLGTMLVAGGSALLAACRRGEATPTPAPSAGTPAAGKQFEGVEVNVITFTGPQIAEPLQRRAPEFQKLTGAKINVITVPFADLYQKILTDFTTGTNSYHVIVFAPQWMADYVEPGYLEDLTPRIEADPALQWDDIAPFFRNFSATYGGRIYTIPLDGDFQMVYYRTDLLEAEGLKPPETWEDYLAIAQKFHGKDLNGDGVPDFGSGIAKRRGAQSYWMFWSIAASFLQSQGTQQGAFFDVDTMEPLTMNEAFERALEIYKETGKYGPPDELNWDVGDSRAAFVTGRCALTLDWGDIGTLAIDPEQSKVKDKVGAVILPGTKEVLDRKAGKLVACDQNTCPHAINGVNHAPYAAFGGWSGAINKNAPAKVKDAGYAFLSYMSQPAQSNVDVTIGKTGFNPYRISQFENIDLWVKAGMSEAAAKNYLGAIKASLNSPNMVLDLRIPGAQRYQGVVLDTVLSRYLAGELTTKQAMEELTKGWNEITDELGREKQKQAYRASLSIR
SIO_010081: TRD_RS01195
subclass of: SO_0000673
so part of: TRD_RS01195
location: complement(257418..258953)
location: region:257418-258953:-1
so has part: feature:257418-258953:-1:exon

WP_012641663.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:257418-258953:-1:exon

TRD_RS01200
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01200
old locus tag: trd_0252
so part of: sequence
location: complement(258950..259771)
location: region:258950-259771:-1
so has part: feature:258950-259771:-1:exon
subclass of: SO_0000010

position:258950:-1
position: 258950
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:259771:-1
position: 259771
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:258950-259771:-1:exon

TRD_RS01200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01200
old locus tag: trd_0252
inference: COORDINATES: protein motif:HMM:NF013757.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IclR family transcriptional regulator
translation: MPVQSPAVWRAVASLDAVARASDGLTLSEVARAIGEPKSTLHAVLATLVEAGLLIREETSKRYRLGPHILALAGAYARQSDLIRAFTEVARPLARELGETIQLAILQGREVLYIGKQEGTQWVRLASEVGTRLPAHATSLGKCLLAWLPENELGCLLAEGPLVALTPRTITDPDALRAELAQVRAQGFAIDRGETLPDVWCFGAPVRDAHGVVVAALSISVPVTRIGVERVEELVRAARAAADELSRQLGFSGVDDRVIDRMGIPSSRRRVAP
SIO_010081: TRD_RS01200
subclass of: SO_0000673
so part of: TRD_RS01200
location: complement(258950..259771)
location: region:258950-259771:-1
so has part: feature:258950-259771:-1:exon

WP_052294027.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:258950-259771:-1:exon

TRD_RS13420
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS13420
old locus tag: trd_0254
so part of: sequence
location: complement(260372..261127)
location: region:260372-261127:-1
so has part: feature:260372-261127:-1:exon
subclass of: SO_0000010

position:260372:-1
position: 260372
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:261127:-1
position: 261127
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:260372-261127:-1:exon

TRD_RS13420
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS13420
old locus tag: trd_0254
inference: COORDINATES: protein motif:HMM:NF023899.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: E3 ubiquitin ligase family protein
translation: MIFVTLCFLITAGVGLVCLIGYRRTRQQLRLLRLVATCPIAELHERIPGEMVEITGTVHCATPLRSEYTGQPCVYYRTVTERVVERHGRSKKGGRLSEVVAQNEQRIAFEVDDGTGRVAVDPVGAEIDGRKLLDRFEPVENGEGATLRIAGMSVEVRAAEWRTLGYRKIEEAVLVGYPVYVLGVLQDDGSIGRPPEGSRLREFLISARSEEELATSLRRRSYLFLAGAITSFVVAGMLLIALLVQSVISIS
SIO_010081: TRD_RS13420
subclass of: SO_0000673
so part of: TRD_RS13420
location: complement(260372..261127)
location: region:260372-261127:-1
so has part: feature:260372-261127:-1:exon

WP_012641666.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:260372-261127:-1:exon

TRD_RS14565
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS14565
old locus tag: trd_0255
so part of: sequence
location: complement(261743..261919)
location: region:261743-261919:-1
so has part: feature:261743-261919:-1:exon
subclass of: SO_0000010

position:261743:-1
position: 261743
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:261919:-1
position: 261919
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:261743-261919:-1:exon

TRD_RS14565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS14565
old locus tag: trd_0255
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLDRLRTAAKFFTWGLALGLLFAPASGRELRRRLLRWVMARLEACVARVRERLTGQPT
SIO_010081: TRD_RS14565
subclass of: SO_0000673
so part of: TRD_RS14565
location: complement(261743..261919)
location: region:261743-261919:-1
so has part: feature:261743-261919:-1:exon

WP_012641667.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:261743-261919:-1:exon

TRD_RS01210
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01210
old locus tag: trd_0256
so part of: sequence
location: complement(261926..262222)
location: region:261926-262222:-1
so has part: feature:261926-262222:-1:exon
subclass of: SO_0000010

position:261926:-1
position: 261926
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:262222:-1
position: 262222
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:261926-262222:-1:exon

TRD_RS01210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01210
old locus tag: trd_0256
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRRGFIRSFLSGFLIGTAIGALAIWLSSSERRAGSVAWRQRASQLAQQARSQGEQIAALARERLASARGLLETRFSAGEQSASAVRSATSEVTVSTES
SIO_010081: TRD_RS01210
subclass of: SO_0000673
so part of: TRD_RS01210
location: complement(261926..262222)
location: region:261926-262222:-1
so has part: feature:261926-262222:-1:exon

WP_012641668.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:261926-262222:-1:exon

TRD_RS01220
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01220
pseudo: true
so part of: sequence
location: 262858..263964
location: region:262858-263964:1
so has part: feature:262858-263964:1:exon
subclass of: SO_0000010

position:262858:1
position: 262858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:263964:1
position: 263964
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:262858-263964:1:exon

TRD_RS01220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01220
inference: COORDINATES: protein motif:HMM:NF024850.2
note: internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: ABC transporter substrate-binding protein
SIO_010081: TRD_RS01220
subclass of: SO_0000673
so part of: TRD_RS01220
location: 262858..263964
location: region:262858-263964:1
so has part: feature:262858-263964:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:262858-263964:1:exon

TRD_RS01225
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01225
old locus tag: trd_0260
so part of: sequence
location: 264320..265780
location: region:264320-265780:1
so has part: feature:264320-265780:1:exon
subclass of: SO_0000010

position:264320:1
position: 264320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:265780:1
position: 265780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:264320-265780:1:exon

TRD_RS01225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01225
old locus tag: trd_0260
inference: COORDINATES: protein motif:HMM:NF014910.2
GO function: GO:0003824 - catalytic activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: FAD-linked oxidase C-terminal domain-containing protein
translation: MDRATIRSRLVEIVGSDGVLDDPEELLVYEYDASDEVFAGHHRPDFAVLPRTAEQVSAVVRLANEFGIPVVPRGAGTGLAGGALALRGGIVVVVTRMNRILEVNEQDGYAIVEPGVINLELTQALQPRGYFFAPDPASQRACTIGGNVGNNSGGPHCLKYGVTTNHILGLEVVLPDGERIWTGGPVPETPGVDLTGVLVGSEGTLGIVTKVMVRLTRLPEAVSVLLAAFPNIESASHATSAIIAAGMLPAALEMMDQLTIKAVEDAFHAGYPREAGAVLLVELDGLQEIVAENTSRVAELCRQHGAWEVRVARTKEERDLLWLGRKSAFGAMGRLAPNYYLVDTTVPRTKLPATMRRVEELSREYRLSIANVFHAGDGNLHPLVLFDRQRPGEVERVLECTTEILRYCVDAGGTLSGEHGIGFEKRDYMTLVFTTEDLCAMAGLKRSFDPRELFNPEKVLPTGFRCGEVAALRQQAIAQRLGLEYV
SIO_010081: TRD_RS01225
subclass of: SO_0000673
so part of: TRD_RS01225
location: 264320..265780
location: region:264320-265780:1
so has part: feature:264320-265780:1:exon

WP_012641672.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:264320-265780:1:exon

TRD_RS01230
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01230
old locus tag: trd_0261
so part of: sequence
location: 265790..267085
location: region:265790-267085:1
so has part: feature:265790-267085:1:exon
subclass of: SO_0000010

position:265790:1
position: 265790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:267085:1
position: 267085
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:265790-267085:1:exon

TRD_RS01230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01230
old locus tag: trd_0261
inference: COORDINATES: protein motif:HMM:NF013714.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: FAD-binding oxidoreductase
translation: MTGTTRLAPGVAMERLAELGAPHDPRAYRVDGLEPLVALAPETPEAVAEALAVCAAAGLVVIPWGGGRQMGLGNLPERYDVALDVRSLSAITHYEPDDLTIAVQAGRSIASLSSELAAHGQMLPIEAADPERVTIGGLVATGIGCPRRFGYGSLRDLIIGITVALPDGTLARGGGIVVKNVSGYDMMRLHFGALGSLGVIIQANFKVLPAPEAQRTLLLSFRESDQSAAAALTLRTSQLAPTALVVLAPPVAKRLADLERWVLAARCEGPEGAVERQVERLRASVETASGESVVLDDRKTLAFWSSVQGELEATPFDRELRVRIGELPSRLGELAAQLERRYGSALRSLVLDSGSGLAYVTVSGEPVELRAFWGELRELGRHATLLGAPIEVKAGEDVFGRHPEGIPVMRRLKETFDPERILNRGRFIAHL
SIO_010081: TRD_RS01230
subclass of: SO_0000673
so part of: TRD_RS01230
location: 265790..267085
location: region:265790-267085:1
so has part: feature:265790-267085:1:exon

WP_012641673.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:265790-267085:1:exon

TRD_RS01235
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01235
old locus tag: trd_0262
so part of: sequence
location: 267107..268456
location: region:267107-268456:1
so has part: feature:267107-268456:1:exon
subclass of: SO_0000010

position:267107:1
position: 267107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:268456:1
position: 268456
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:267107-268456:1:exon

TRD_RS01235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01235
old locus tag: trd_0262
inference: COORDINATES: protein motif:HMM:NF014774.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: heterodisulfide reductase-related iron-sulfur binding cluster
translation: MTTASAPARLRGFSGRDAPSYDAIRKCVHCGFCLPSCPTYRVTWRERSSPRGRIWLMKSVAEGRLDLLDPVFAEEMQLCLNCRACEAVCPSGVHYGEILEASRAQLVQHREQSWRERLFRLAGFRILLGDMRRFRAANALLRWYQRSPLRPLVRRSGVLRLLGLEQAEALLPAIADRFVVADGRFVPAQGERRGRVALFTGCVMSTAYAHVHEATIRVLTRNGFDVVLVSGQQCCGALHVHSGEPELGRRLARQNIEALESPYLDAIIVNAAGCGAMLKEYPALLRQDHDYAERARQLAGKVRDVLEFLVERGLTAQPGPLPWTVTYQEPCHLAHAQRITQQPRVLLRTIPQLRLVEMAESALCCGSAGIYNLLQPDMASTLLARKLDNALATGADVIVSANPGCMLQLEAGLRARGVRLPVLHLVEVLDRAYAAAEGRPADILAAVAD
SIO_010081: TRD_RS01235
subclass of: SO_0000673
so part of: TRD_RS01235
location: 267107..268456
location: region:267107-268456:1
so has part: feature:267107-268456:1:exon

WP_012641674.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:267107-268456:1:exon

TRD_RS01240
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01240
old locus tag: trd_0263
so part of: sequence
location: 268496..269674
location: region:268496-269674:1
so has part: feature:268496-269674:1:exon
subclass of: SO_0000010

position:268496:1
position: 268496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:269674:1
position: 269674
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:268496-269674:1:exon

TRD_RS01240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01240
old locus tag: trd_0263
inference: COORDINATES: protein motif:HMM:NF025006.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: carboxypeptidase-like regulatory domain-containing protein
translation: MVRRGLGRSFLFVWLAFMLSALPAHAQEGNGAISGRVQNGTAGGGPVSSLTVTLRHFAGMQLAEERQTQTGPDGSFRFDGLPTSPQDAYLVVVRYAGVDYVSGMVQLHQQPEQTVDLTVYETTTDPSAMRIASRSLVIAGASPELRAVDIMDILIVENSGDRTYLGDRSGVVLRIPLPRGAQEISPQPGFDYGQPRLEDGVLLTTGPLPPGSQTVVLSYTVPYEGTRATLSIGTAMPTSTLRVLVRDGTYRLSSRSLIDTGTVEVSGVTYRVLAVDAPVVGDMHVVQVSGLPRTGLLFDLPTGPIIALVVGLAGLVAAAVLTVIVLRRRRVGTETSRAAIDERLQLAAELNRLDEARAAGELDETAYQEQRSAVLARLRQLVAREQGVERSG
SIO_010081: TRD_RS01240
subclass of: SO_0000673
so part of: TRD_RS01240
location: 268496..269674
location: region:268496-269674:1
so has part: feature:268496-269674:1:exon

WP_012641675.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:268496-269674:1:exon

TRD_RS01245
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01245
old locus tag: trd_0264
so part of: sequence
location: 269677..271650
location: region:269677-271650:1
so has part: feature:269677-271650:1:exon
subclass of: SO_0000010

position:269677:1
position: 269677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:271650:1
position: 271650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:269677-271650:1:exon

TRD_RS01245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01245
old locus tag: trd_0264
inference: COORDINATES: protein motif:HMM:NF012546.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: S9 family peptidase
translation: MKRSVRAEDLALLQLASDAQIAPDASAVAYVVTTMDLEADRYRSAIWLARTDGSPPRRFTSGTHRDTMPRWSPSGEELAFLSDRTGSDQLWVIPRNGGEARQLTNFVEPVTGFAWSPDGQRIAVVTRAQQAEGKVDPETDVVRLTRLRYRFDGQRGFLHERRSHIWVVDLRTGTLERATDGDWDDDWPAWSPDGSQLVFTSNRTEEREWNAASELWLLRFDAAGRTVDLSCVTGGPSAAFGRPSWSPDGRLIAAVGHFESWAGSARHKRLWVMTPDGNERWNLSADFDATLEDSLLTDAFGPSKPGLLWSPDGRWIFTQVSEQGAVRLYRFPVSGGAPECIIGGARRVLDFSLSADGRWIAAVIAGPVDPGSVWLMAADGSSSRCLADPNAAWKEEVEILGPEEMWVSSPVDGRPIHAWVLRPANAGDERVPLVLSIHGGPHGMYGWAYCHEFQVLAAEGYGVVYANPRGSQGYGETFLACTRGAWGEADMPDLMAVVDAVLAQGWADPGRLGVCGGSYGGYMTNWIIGHTDRFRAAVSMRCVSELVSMYGTSDIGVYFSEWEIGATPWDDPERYRRLSPLTYAPNIRTPLLLLHAEEDWRCPIAQAEQLFTWLRRLGRTVELVRFPGEGHNLTRSGRPRHRLEHLEHELRWFRTYL
SIO_010081: TRD_RS01245
subclass of: SO_0000673
so part of: TRD_RS01245
location: 269677..271650
location: region:269677-271650:1
so has part: feature:269677-271650:1:exon

WP_012641676.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:269677-271650:1:exon

TRD_RS01250
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01250
old locus tag: trd_0265
so part of: sequence
location: complement(271657..272916)
location: region:271657-272916:-1
so has part: feature:271657-272916:-1:exon
subclass of: SO_0000010

position:271657:-1
position: 271657
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:272916:-1
position: 272916
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:271657-272916:-1:exon

TRD_RS01250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01250
old locus tag: trd_0265
inference: COORDINATES: protein motif:HMM:TIGR00619.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: exonuclease SbcCD subunit D
translation: MLRLIHFADLHLGVETHGQFRPDLGHSSRIQDFLDAFDQIIDAAIEERFDAVLFAGDAFKHAEPSPTLQRRFAERIQRLLAAGIPIVLLVGNHDRPRSVVRSTPIDIYAALRLPGVIVANRPERFTIATPSGPLQVVALPWIPPRLLLADDALREAGTPELERRYKEVIASALAPLLAALDAATPAVFLGHLSMEGGRFGSERSVILGNDPLFGLDELGLNSAPIDYVALGHLHSHQVLHERPPVVYAGSVERIDFGEEREDKGYVAVRIAAGPYPRDVSWEFRPLRTRPMRTFRLDILTDTPMDEIRRALERHATLIPEAIVRVTITTTPERAAAIRPLEVRRWLSELGAAHVAGITVQTERVARPRVELERSSRHDPVSLLERWVNLHRLSDQLAKAVIQRGREIIERVESRSSEPR
SIO_010081: TRD_RS01250
subclass of: SO_0000673
so part of: TRD_RS01250
location: complement(271657..272916)
location: region:271657-272916:-1
so has part: feature:271657-272916:-1:exon

WP_012641677.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:271657-272916:-1:exon

TRD_RS01255
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01255
old locus tag: trd_0266
so part of: sequence
location: complement(272933..274558)
location: region:272933-274558:-1
so has part: feature:272933-274558:-1:exon
subclass of: SO_0000010

position:272933:-1
position: 272933
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:274558:-1
position: 274558
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:272933-274558:-1:exon

TRD_RS01255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01255
old locus tag: trd_0266
inference: COORDINATES: protein motif:HMM:NF014044.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-binding protein
translation: MSLDGQHNAHVTDHVSDNAFLGVVTDGRFSQGLRVRLLDPAAVERLRVGSFVVIEGIERRYFGMITDLSLDTTDAALLADPPIRSPFLSRIVRGTHAYATAEIRPSLVLEPESDQPQPARSIPPHFARLRQATADDFALVFGQEDSTHFALGTPPAMEIPVPLDLAELVKRSNGVFGQSGSGKSVLTRLLLVGLVLADQVSILLFDMHNEYARAPTDQPELVGLLELFGPSRVQIYTLDDRTERSASARTIQIGLDQIEPDDIELLAEELNLNPTFATVAHHLRARYGPQWIRQTLEFDTEAVKEFCASTGVAEASVNALRAKLDRLAKRPYICETLDTSVIDEIIGKLQRGTHIIVQFGRCDSFLDYMLVANLLTRRIHDRYTEDVLEAQQAGGQSNLRPLVIVLEEAHKFLTPEAARQSIFGTIAREMRKYRVTLLIVDQRPSSIDREILSQLGTKVIGPLSDQHDIEAVLTGVADRSGLRSLLANLSPRQECVIVGHAVRMPVAIRTRQYRREEILALVRGWGKTMDDERHLRLLLGQ
SIO_010081: TRD_RS01255
subclass of: SO_0000673
so part of: TRD_RS01255
location: complement(272933..274558)
location: region:272933-274558:-1
so has part: feature:272933-274558:-1:exon

WP_012641678.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:272933-274558:-1:exon

TRD_RS01260
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01260
old locus tag: trd_0267
so part of: sequence
location: 274641..276347
location: region:274641-276347:1
so has part: feature:274641-276347:1:exon
subclass of: SO_0000010

position:274641:1
position: 274641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:276347:1
position: 276347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:274641-276347:1:exon

TRD_RS01260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01260
old locus tag: trd_0267
inference: COORDINATES: protein motif:HMM:NF024883.2
GO function: GO:0005515 - protein binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GAF domain-containing protein
translation: MLDNEWETLAELLKAPVDPSRRVLAGPVGRLQALHWITRAATSSLDLDEMLSTVTRVLRETMRVDSCGVFLYDESSGTLTLRAVDGVAPDRPGGFTLPLGVGITGQAALTRRLQIAFDAPRHPAYVDYPHVDDRPFASQVSVPLIARQPGRLLGVLNVLTLEPREFWPEEIDFLETAAGEIAIAIENALLYQETDAELRRRIAQLELLQQLWRAVASTLDLDELLGTIADRALELSGARGVAIFRQSRASGGELELLRAAPVELATRLTEGLETVFRQVVQEVLDSGAAVWRDPLADQLALYALPMITGRRAVGALCLVYSAGRPRPIQTGLLHAFTDTAAIAIENAELYEEARRGLTRASALLRELHHRVRNNLQTVAALLSLQARRAGPEARAVLQDAVSRIRSLTVVHDLLSGRELPEVSLTELARIVVTQAVHSLYGDELAVEWSVEGEEVTVSSRQTTVLALLLNEFVTNAVRHGFADGPGHLVVRIQREGDRALLEVEDDGRGLPSDFDPLRGRGLGLQIARTLVEVDLRGDLEMRSGARGGTVVRVRFVPEGRVAATQPVS
SIO_010081: TRD_RS01260
subclass of: SO_0000673
so part of: TRD_RS01260
location: 274641..276347
location: region:274641-276347:1
so has part: feature:274641-276347:1:exon

WP_012641679.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:274641-276347:1:exon

TRD_RS01265
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01265
old locus tag: trd_0268
so part of: sequence
location: 276414..277205
location: region:276414-277205:1
so has part: feature:276414-277205:1:exon
subclass of: SO_0000010

position:276414:1
position: 276414
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:277205:1
position: 277205
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:276414-277205:1:exon

TRD_RS01265
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01265
old locus tag: trd_0268
inference: COORDINATES: protein motif:HMM:NF024950.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SDR family oxidoreductase
translation: MGNEGFTGYWAVILGASSGFGAATARELARAGMHICGVHLDRRATLPMAEAVKADVEAAGVEALFVNANAADAETRRQVASALRERGARVRVLMHSLAFGTLRPYIDEDAAQEVTQKQLEMTLDVMANSLVYWTQDLFHAGLFAPDARIYAMTSEGSTRVWRGYGPVSAAKAALEAHVRQLAVELARYGIAVNAIQAGVTPTPAQAKIPGAEEMLREAERRNPSGRLTSPEDVARAIRALSAPGLGWITGNVIRVDGGEALVP
SIO_010081: TRD_RS01265
subclass of: SO_0000673
so part of: TRD_RS01265
location: 276414..277205
location: region:276414-277205:1
so has part: feature:276414-277205:1:exon

WP_041435903.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:276414-277205:1:exon

TRD_RS01270
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01270
old locus tag: trd_0269
so part of: sequence
location: complement(277218..278267)
location: region:277218-278267:-1
so has part: feature:277218-278267:-1:exon
subclass of: SO_0000010

position:277218:-1
position: 277218
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:278267:-1
position: 278267
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:277218-278267:-1:exon

TRD_RS01270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01270
old locus tag: trd_0269
inference: COORDINATES: protein motif:HMM:NF017181.2
GO function: GO:0016787 - hydrolase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: M20/M25/M40 family metallo-hydrolase
translation: MRERIAEVLTELMALPGPTGREEPVLAWLERAWAPHVKRLWRSRIGNLLAYVGGAGPRLLLTAHADELSFVVRSIDSSGLLWLTTGQVRGEPQERFPVGQPALVLGRDVAIEGMFVLATGHVVPEERRSKPVTFADLFVDIGANSKQEVLERGITVGSSVVWNPPTRRLGSRLYGKAIDDRVGLALLTLLVRQIDAQQLDCALYLAATVQEENGLLGASSLRADLDVDWAIALDVGLVGDLPTIGEQWMPATLGGGPQLVHKDAATHYDQRLLWRLADLADRNGLPVQHVVFDRYGSDGAALIRQGIPTALVAVGARHTHAPFEAVDLADVEATLHLLEHVVYEGPTDQ
SIO_010081: TRD_RS01270
subclass of: SO_0000673
so part of: TRD_RS01270
location: complement(277218..278267)
location: region:277218-278267:-1
so has part: feature:277218-278267:-1:exon

WP_012641681.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:277218-278267:-1:exon

TRD_RS01275
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01275
old locus tag: trd_0270
so part of: sequence
location: 278471..278995
location: region:278471-278995:1
so has part: feature:278471-278995:1:exon
subclass of: SO_0000010

position:278471:1
position: 278471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:278995:1
position: 278995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:278471-278995:1:exon

TRD_RS01275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01275
old locus tag: trd_0270
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGRERTRSDRTLIVRRSRLRGLLIAALALAFFVAAVWFAWHAGSWLERLFAVSMAVFLGLVTVVSTLIALDRNPVLEIDEEGLTDRGSPVRAGRVPWQSIRRIEAKSVGTRRYLVVQVYRPQRFIADLDPERRKAAEELIQRHGTPIVIPWEALDQPLDAVVEQAEALRQSTAT
SIO_010081: TRD_RS01275
subclass of: SO_0000673
so part of: TRD_RS01275
location: 278471..278995
location: region:278471-278995:1
so has part: feature:278471-278995:1:exon

WP_012641682.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:278471-278995:1:exon

TRD_RS01280
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01280
old locus tag: trd_0272
so part of: sequence
location: 279277..280035
location: region:279277-280035:1
so has part: feature:279277-280035:1:exon
subclass of: SO_0000010

position:279277:1
position: 279277
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:280035:1
position: 280035
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:279277-280035:1:exon

TRD_RS01280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01280
old locus tag: trd_0272
inference: COORDINATES: protein motif:HMM:NF012235.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter ATP-binding protein
translation: METVARTMGTTREQERTPIVEATNVVKIYDTGRVKVPALRGVSLTVYGGEMVAIMGPSGSGKTTLLNCLSGLDTIDEGMILIAGKELARLPDDVRSEFRARHMGFVFQLFNLIPVLSALENVELPALLAGIRPSEARRRAWAVLEQVGLADRAGHKPAELSGGQQQRVAIARALVNQPDIIWADEPTGNLDTETADEVMALLRRLNRENGQTFVIVTHDPRIGSMCDRVIQMRDGLIIDDGLASFRAAAGGE
SIO_010081: TRD_RS01280
subclass of: SO_0000673
so part of: TRD_RS01280
location: 279277..280035
location: region:279277-280035:1
so has part: feature:279277-280035:1:exon

WP_143714586.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:279277-280035:1:exon

TRD_RS01285
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01285
old locus tag: trd_0273
so part of: sequence
location: 280042..283005
location: region:280042-283005:1
so has part: feature:280042-283005:1:exon
subclass of: SO_0000010

position:280042:1
position: 280042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:283005:1
position: 283005
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:280042-283005:1:exon

TRD_RS01285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01285
old locus tag: trd_0273
inference: COORDINATES: protein motif:HMM:NF024116.2
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter permease
translation: MNEIFGVSLALVLRILLVAFGVILALTLGLWIWRPVLGRMALRNIPRRPIQTALIVIGLMLSTLIFSASLTTGTTLQHSITGQVLRLAGPADELVVQASGDARFAGPQPGVYLPSELVDRLDALQASEPRLRAVIPALWQPVAVIDLRTKQSEPALNLIGVPPDRLAQVGGLTDRDGRAVDLGTLGDDEVVLGQEAAKRLDAEVGDRLQVFIQGRPVELRVAAIAPDSFFTGTLNVGDAGGLTVSLARAQELLGLADRVSFVALNNRGGLADSQAVTDAVNAALEGTPYRAVAVKQRAVEQAERAGETFTNLFLLSGLFSVAAGILLIFLIFALLAAERKTEMGTMRALGMKRWHLVALFALEGMGYNLVAAAVGAVAGVAVAFTIAGFMGQLVGEFFTIEPSWRPRDLVLAYLLGVVVTFVTVVIAAWRVSRLNIVTAIRDLPEPRLPRASRRWLIAGLAGLLLGGGLTWLGLREESLAWFALGVSLLPLSAAAVLRRFGVPARPLYSVASLIVLAYWLLPDHWHERLFGPMSGGFEMFVLSGLMMVAALTVFLVWNIEVAVGLVGRLGRAFRRWLPAVRIAIAYPMASRGRTGLTVAMFSLILFALVVMSTIYANVVALFAGPLASAGWDVEVTVVGGRAIPDLEGVLKEGGVDVSAIVASGGTMSVPWTRASVRVAGTEKEWARYPVRGIDGDFASAVEAPLQLRSPDYATDREAWEAVARDPSLAIVDANVLQQRGGDPANLYLPDLREGFRPLELEIRDNTSGQSGTVRVIGVIDGRVSSLQGVFVAEQAVSTIFGRPTTVDYYVRLTDAADARSFARAVEAALLPYGAQAEATADLIGRATGIIRGFIRIIQGFMALGLVVGIAALGVVSYRAVIERRQQIGALRAIGYRRAMVALGFLLESALVTSAGIAGGTALGVLLARNVVTGQEDLAGRFEQFSLVIPWGQLALFAGLALGIALLMAYAPARQASRVSIVEALRYE
SIO_010081: TRD_RS01285
subclass of: SO_0000673
so part of: TRD_RS01285
location: 280042..283005
location: region:280042-283005:1
so has part: feature:280042-283005:1:exon

WP_012641685.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:280042-283005:1:exon

TRD_RS01290
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01290
old locus tag: trd_0274
so part of: sequence
location: 283014..284168
location: region:283014-284168:1
so has part: feature:283014-284168:1:exon
subclass of: SO_0000010

position:283014:1
position: 283014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:284168:1
position: 284168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:283014-284168:1:exon

TRD_RS01290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01290
old locus tag: trd_0274
inference: COORDINATES: protein motif:HMM:NF019522.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: YibE/F family protein
translation: MLVRFVLVTVAVSVLVAAAQSVAAQEPARQAQTHTVSARVLSILEEGVTQVGPVTQPYQRLLVELTSEPEKGRTVEVSIGVRDLNTAGQRFVPGDRIFLSVSTGPDGRQAYTLLDRDRTTPLAVLAVLFAGAIVALGRWKGLRALLGLVFTFVMLVWVLIPLILRGYPPVAVAIIVSFVVFAVTLVVTHGLGRMALAALAGTSLSLILTGALAALFVAAAGLTGLADEEASFLQVVLGDRAMNPRGLLLAGMLVGALGVLDDITVSQSSLVFELRRANPFWSGWELFAAGVRVGRDHIAATVNTLVLAYAGAALPLLLLFSQLDEPLLWVLNREIIAQEVVQTLVGSLGLIAAVPLTTGFAAWLAVRTPVEALSELDHGHWHHH
SIO_010081: TRD_RS01290
subclass of: SO_0000673
so part of: TRD_RS01290
location: 283014..284168
location: region:283014-284168:1
so has part: feature:283014-284168:1:exon

WP_012641686.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:283014-284168:1:exon

TRD_RS01305
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01305
old locus tag: trd_0277
so part of: sequence
location: complement(284720..285475)
location: region:284720-285475:-1
so has part: feature:284720-285475:-1:exon
subclass of: SO_0000010

position:284720:-1
position: 284720
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:285475:-1
position: 285475
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:284720-285475:-1:exon

TRD_RS01305
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01305
old locus tag: trd_0277
EC number: 3.4.21.-
inference: COORDINATES: protein motif:HMM:NF013827.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: rhomboid family intramembrane serine protease
translation: MFPIGDDNSGRQSFPIVNTILIALNVLVFLYQLLLLAQSPLALENFVFKYGAIPYELTRGVDLPPTVGFPIYLTIFTSMFLHGGFAHLIGNMWYLYIFGDNVEDSMGHFRYLIFYLLGGIAAAWAQTLLDPASRIPMIGASGAISAVMGAYLVLYPGGLIRTVAFFGFIPFFFYLPALILIGLWFVFQFFAGIASLGVPTAPTGGVAYWAHIGGFVAGLVLVWFFRDPERVERQRLARRAHRAFQRLERGW
SIO_010081: TRD_RS01305
subclass of: SO_0000673
so part of: TRD_RS01305
location: complement(284720..285475)
location: region:284720-285475:-1
so has part: feature:284720-285475:-1:exon

WP_012641689.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:284720-285475:-1:exon

TRD_RS01310
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01310
old locus tag: trd_0278
so part of: sequence
location: complement(285545..285820)
location: region:285545-285820:-1
so has part: feature:285545-285820:-1:exon
subclass of: SO_0000010

position:285545:-1
position: 285545
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:285820:-1
position: 285820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:285545-285820:-1:exon

TRD_RS01310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01310
old locus tag: trd_0278
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAETHPFRLHPDEVARRAREYFTDQLGIPLVRDMAGYMRFEDVHGFVELDIRGDANNQSRVTFQYQGYEREVHEFRRLLAEQAQEETRQGE
SIO_010081: TRD_RS01310
subclass of: SO_0000673
so part of: TRD_RS01310
location: complement(285545..285820)
location: region:285545-285820:-1
so has part: feature:285545-285820:-1:exon

WP_012641690.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:285545-285820:-1:exon

TRD_RS01315
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01315
old locus tag: trd_0280
so part of: sequence
location: complement(286116..286829)
location: region:286116-286829:-1
so has part: feature:286116-286829:-1:exon
subclass of: SO_0000010

position:286116:-1
position: 286116
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:286829:-1
position: 286829
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:286116-286829:-1:exon

TRD_RS01315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01315
old locus tag: trd_0280
inference: COORDINATES: protein motif:HMM:NF024811.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: haloacid dehalogenase-like hydrolase
translation: MPLLVLFDIDGTLLRAGDPLHAQAMREALHEIVGEPVPLDGIPLAGMLDRQIARLALLRHDLDETAISELLPRIMERTGALYATRLRPGERQDWVLPGVRPLLLQLAARGHLTGVLTGNVELVARAKLAAAGLAEHLPFGAYGDQADERHQLVALARATVRERYRLVIPPEQTILVGDTPRDIAAAQASGVRILAVATGRFGVAELAACLADAVLPDLADTAAVLRTLEALAGTHPR
SIO_010081: TRD_RS01315
subclass of: SO_0000673
so part of: TRD_RS01315
location: complement(286116..286829)
location: region:286116-286829:-1
so has part: feature:286116-286829:-1:exon

WP_012641692.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:286116-286829:-1:exon

TRD_RS01320
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01320
old locus tag: trd_0281
so part of: sequence
location: complement(286829..288175)
location: region:286829-288175:-1
so has part: feature:286829-288175:-1:exon
subclass of: SO_0000010

position:288175:-1
position: 288175
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:286829-288175:-1:exon

TRD_RS01320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01320
old locus tag: trd_0281
inference: COORDINATES: protein motif:HMM:NF013696.2
GO function: GO:0016787 - hydrolase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: M20/M25/M40 family metallo-hydrolase
translation: MTDCGIDWNALQDEVTRHLQALIRFETVNPPGNETPFAEYLAGVLRREGIAAEVVESAPGRGNLVARLRGRGHGRPLLLMAHSDVVSVERDKWTRDPFGGELVDGRVWGRGAVDTKGLVACELGVMLTIQRLGLPLERDLIFAVFADEEAGGQYGACWMWEHRRDLIDAEFAINEGGGMALTLGGQRFYLCQTGEKGAARLRLTARGQPGHASMPIPDTAMQHAARAILTLSTHTFPTVLTPTVTRFLHEIGRALGGSVRQQIESALADPTWERLAALPLGPGERRLLYAMTRNTAVPTIVRGGHRINVIPSEVVVEVDGRILPGQEPEAFAAEVQRLVGPHVEVELTTRGRGLEADPDSPLFRTISETMAELDPGARVVPYLIPGGTDAKCLPGITVYGFMPMRDHPEEFELAHAHDERISVSTLGFATRALFEIVTRFCAPRSRSR
SIO_010081: TRD_RS01320
subclass of: SO_0000673
so part of: TRD_RS01320
location: complement(286829..288175)
location: region:286829-288175:-1
so has part: feature:286829-288175:-1:exon

WP_012641693.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:286829-288175:-1:exon

TRD_RS01325
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01325
old locus tag: trd_0282
so part of: sequence
location: complement(288172..289101)
location: region:288172-289101:-1
so has part: feature:288172-289101:-1:exon
subclass of: SO_0000010

position:288172:-1
position: 288172
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:289101:-1
position: 289101
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:288172-289101:-1:exon

TRD_RS01325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01325
old locus tag: trd_0282
inference: COORDINATES: protein motif:HMM:NF013088.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DMT family transporter
translation: MTAGWRARVERRWLVGIDRIGAGAVVLSALGFGTLATLTKLAYGASVPVPTLIAWRFGIAALLVIMALPLEQWRRGQLFGRQPWTDRRRLATAAAVACFVGNTILYLVALQRVSVATAAILFYVYPLVVLALRLVGWREVPTRRQLAALLAGFSGVTLTLGWRWHTIDLTGSLLMLASASLYAAYIVFGHRGFRDASPVLATACTFSATAVVALALLSVERAPLLIDRSALLPVLGIVVLATVLPVQLFLIGTLRLGPTPAAILGTLEPVASVFVAMMVLSEQLTLVQLVGGLLVLTAAAVISGQGGKP
SIO_010081: TRD_RS01325
subclass of: SO_0000673
so part of: TRD_RS01325
location: complement(288172..289101)
location: region:288172-289101:-1
so has part: feature:288172-289101:-1:exon

WP_012641694.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:288172-289101:-1:exon

TRD_RS15235
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS15235
old locus tag: trd_0284
so part of: sequence
location: 289333..289791
location: region:289333-289791:1
so has part: feature:289333-289791:1:exon
subclass of: SO_0000010

position:289333:1
position: 289333
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:289791:1
position: 289791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:289333-289791:1:exon

TRD_RS15235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS15235
old locus tag: trd_0284
inference: COORDINATES: protein motif:HMM:NF012451.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: J domain-containing protein
translation: MTRVHDFDPTMDYYQILGVPVTATSDEIRRAYRQLIRHCHPDRIRDPDKRRIAEERAKLLNAAYAVLSDPARRRAYDERLRQRAVADLLFQRYIAPAPSPFRPAPTRRARAWFAADVAAFVQLLAVTIIFVAVLVLLLVASSALTTLLQGLS
SIO_010081: TRD_RS15235
subclass of: SO_0000673
so part of: TRD_RS15235
location: 289333..289791
location: region:289333-289791:1
so has part: feature:289333-289791:1:exon

WP_012641695.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:289333-289791:1:exon

TRD_RS13425
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS13425
old locus tag: trd_0283
so part of: sequence
location: complement(289788..290636)
location: region:289788-290636:-1
so has part: feature:289788-290636:-1:exon
subclass of: SO_0000010

position:289788:-1
position: 289788
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:290636:-1
position: 290636
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:289788-290636:-1:exon

TRD_RS13425
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS13425
old locus tag: trd_0283
inference: COORDINATES: protein motif:HMM:NF012955.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MBL fold metallo-hydrolase
translation: MPVTLAGYTVEPLVDVEGAFFPLAIVFPDVPLESWEPYRDRFPDTFAREDMLYTRVTCYLIRGHGRTVLVDAGIGAGPDPLFGHQRGRLLQELAQRGLAPGDIDTVILTHLHPDHIGWAAQSGQPTFPRARYLVHARELETFQREDVRAAMHQIAPGYLDRCLDPLQQAGVLATVDDDTEIAPGLHLTISPGHTPGMMRVVLRGTPGSLWLVADTFTHPAQVTEPTWCSAFDMDRSQAIATRFEVLGRAHEEDALVMASHFPTIPGRIRQENGSFRWEPISD
SIO_010081: TRD_RS13425
subclass of: SO_0000673
so part of: TRD_RS13425
location: complement(289788..290636)
location: region:289788-290636:-1
so has part: feature:289788-290636:-1:exon

WP_012641696.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:289788-290636:-1:exon

TRD_RS01340
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01340
old locus tag: trd_0286
so part of: sequence
location: 290780..291568
location: region:290780-291568:1
so has part: feature:290780-291568:1:exon
subclass of: SO_0000010

position:290780:1
position: 290780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:291568:1
position: 291568
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:290780-291568:1:exon

TRD_RS01340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01340
old locus tag: trd_0286
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSVSSFFTLVMLFAGLALAACGAATNASDRGATGGPPNPGSPAVMEPTADPVATTERRGIFFRHVTLRDAPYSNQTELVIDLTLPDACTELHHAVTIDGKRIRVEVWGVGPSDQMCAQVLREETLVIPLGVVVSDDWIVELNRVEIDVNSVAREEPGSGSHEYGYAMIEQVEVRVGDERPRQVVADVQGALPDACAELVESPEITFDGAKVTVTLQWQRPRDLMCAQVLRPFTTSVDLGELEPGTYTLVVNDLETTFTVETN
SIO_010081: TRD_RS01340
subclass of: SO_0000673
so part of: TRD_RS01340
location: 290780..291568
location: region:290780-291568:1
so has part: feature:290780-291568:1:exon

WP_143714589.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:290780-291568:1:exon

TRD_RS14785
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS14785
old locus tag: trd_0285
so part of: sequence
location: complement(291565..292341)
location: region:291565-292341:-1
so has part: feature:291565-292341:-1:exon
subclass of: SO_0000010

position:291565:-1
position: 291565
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:292341:-1
position: 292341
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:291565-292341:-1:exon

TRD_RS14785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS14785
old locus tag: trd_0285
inference: COORDINATES: protein motif:HMM:NF012596.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: enoyl-CoA hydratase/isomerase family protein
translation: MEQPVLLVAHHAGIVTLTLNRPTVRNALDLALARAIATTAQELAQDASLRLVVLRGTPPAFCAGADLTERSKMSPRERTAHTDAIAAAVEAIAELPVPTIAAISGACLAGGAELALACDLRFADTTARIGFPEVRRGIFPGAGGVLRLPQLVGRGRAADLLFSGRTLDAQEAFRIGLIDQLCEPGHLDTMLDHWITELRQAAPGAVRAVKAALQRVLTTDAVTLADIRSLRRALDESPEYEEGLRAFAERRPPSWANG
SIO_010081: TRD_RS14785
subclass of: SO_0000673
so part of: TRD_RS14785
location: complement(291565..292341)
location: region:291565-292341:-1
so has part: feature:291565-292341:-1:exon

WP_041435906.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:291565-292341:-1:exon

TRD_RS14790
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS14790
old locus tag: trd_0287
so part of: sequence
location: 292603..293775
location: region:292603-293775:1
so has part: feature:292603-293775:1:exon
subclass of: SO_0000010

position:292603:1
position: 292603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:293775:1
position: 293775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:292603-293775:1:exon

TRD_RS14790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS14790
old locus tag: trd_0287
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIDFGKLVMAGQAAPMAIWLRDRGTERPTMLAELFAAAEDWRHSGKRLDLGRALAQVDPSLVDPLTGLPRGSPFGLYRELLGIHFFQDIIDQLRPLSETQGAIALASMLGLEPWYVFATVYPRRVRREEQDPTELDVPEEVIQWIGNWALGLQMIDVAGQAVLPEYIGRPVTAEPMVWPALLALRERIPHPLLIDEPERTDFIAAVEQWDRRIDERMFLIERASLAWVERYGEPPRSFARLRSGRPWRPWHYPDTFDPADGVLPQLLRAAVALVKGWGDQTPTLFSSAKVLEIWESSRAALGPLVESAYARTVARVLDIEWALRPSRTSQSVSDDLVWRLVLLEAILRESAGAVRALVAEPLEWIAEYRDVMEQFVEWTARFLRIGTQSG
SIO_010081: TRD_RS14790
subclass of: SO_0000673
so part of: TRD_RS14790
location: 292603..293775
location: region:292603-293775:1
so has part: feature:292603-293775:1:exon

WP_012641699.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:292603-293775:1:exon

TRD_RS01355
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01355
old locus tag: trd_0288
so part of: sequence
location: 293821..295017
location: region:293821-295017:1
so has part: feature:293821-295017:1:exon
subclass of: SO_0000010

position:293821:1
position: 293821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:295017:1
position: 295017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:293821-295017:1:exon

TRD_RS01355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01355
old locus tag: trd_0288
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSESERTFQIAQRVHRAFVESTMADARRDRLIGEYARAARAWQARGQSLGLEVAMQRSGLDARIRESWLDAVAFDFFRAVVTELQPLLETQLALRLAGLVGIEPWVVIALREREEGGLPGTRRARVPWEVVRRFSRWSLGSISVALAVLELEDHVRGRCDADRFSLDWPLLWHLRDRIPHPFGLDGQATAEFASACARSRGELPISDCFLEQLRRDTTASWRAMATREVDERSLAGRSMAPRGSTGQLDDYPRDEVASAVLTAAALAAWFDSDTIAAELADRVATMFAKQSDEPLPPVFHLLGIGTQERWHQAAGPLTALLPTTYARTCAVGLGLPGVPERDAGWLDGSLAVGGKLLLFEGVLREACGALYALAIDPLDHLERTRDYAHALLGSLDPL
SIO_010081: TRD_RS01355
subclass of: SO_0000673
so part of: TRD_RS01355
location: 293821..295017
location: region:293821-295017:1
so has part: feature:293821-295017:1:exon

WP_012641700.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:293821-295017:1:exon

TRD_RS01365
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01365
old locus tag: trd_0290
so part of: sequence
location: complement(295421..295493)
location: region:295421-295493:-1
so has part: feature:295421-295493:-1:exon
subclass of: SO_0000663

position:295421:-1
position: 295421
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:295493:-1
position: 295493
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:295421-295493:-1:exon

TRD_RS01365
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 309801
locus tag: TRD_RS01365
old locus tag: trd_0290
product: tRNA-Gly
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(295458..295460),aa:Gly,seq:ccc)
SIO_010081: TRD_RS01365
subclass of: SO_0000673
so part of: TRD_RS01365
location: complement(295421..295493)
location: region:295421-295493:-1
so has part: feature:295421-295493:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:295421-295493:-1:exon

TRD_RS01370
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01370
old locus tag: trd_0291
so part of: sequence
location: 295993..296068
location: region:295993-296068:1
so has part: feature:295993-296068:1:exon
subclass of: SO_0000663

position:295993:1
position: 295993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:296068:1
position: 296068
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:295993-296068:1:exon

TRD_RS01370
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 309801
locus tag: TRD_RS01370
old locus tag: trd_0291
product: tRNA-Ala
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:296026..296028,aa:Ala,seq:cgc)
SIO_010081: TRD_RS01370
subclass of: SO_0000673
so part of: TRD_RS01370
location: 295993..296068
location: region:295993-296068:1
so has part: feature:295993-296068:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:295993-296068:1:exon

TRD_RS01375
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01375
old locus tag: trd_0292
so part of: sequence
location: 296156..296428
location: region:296156-296428:1
so has part: feature:296156-296428:1:exon
subclass of: SO_0000010

position:296156:1
position: 296156
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:296428:1
position: 296428
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:296156-296428:1:exon

TRD_RS01375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01375
old locus tag: trd_0292
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKTRTFQLIGRRSSQPDVLLVRDQEGRYYLRPGCNGRLVRVTARDAERLLRNYEYRPILSATWLSFEELIRTDCPLPAESTPSLTSHERA
SIO_010081: TRD_RS01375
subclass of: SO_0000673
so part of: TRD_RS01375
location: 296156..296428
location: region:296156-296428:1
so has part: feature:296156-296428:1:exon

WP_012641702.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:296156-296428:1:exon

TRD_RS01380
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: ftsH
locus tag: TRD_RS01380
old locus tag: trd_0293
so part of: sequence
location: complement(296495..298453)
location: region:296495-298453:-1
so has part: feature:296495-298453:-1:exon
subclass of: SO_0000010

position:296495:-1
position: 296495
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:298453:-1
position: 298453
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:296495-298453:-1:exon

TRD_RS01380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: ftsH
locus tag: TRD_RS01380
old locus tag: trd_0293
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012641703.1
GO function: GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO process: GO:0051301 - cell division [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-dependent zinc metalloprotease FtsH
translation: MSDNKWLRNGFVWMILIIAAIAVWVTFVQGGRGGATITTQEMAADIKAGKVERLVMTSGSDEIQVQYIGTNEVRTLRLPPNVDIFELLKTFGIDPQQVDIQTHRASQWGNVLGTLTFLLPTLFLIGVIIFMMRQAQGTNNQALSFGKSRARVFTSNRPTVTFDDVAGVDEAKEELQEIVEFLKYPEKFAALGARIPRGVLLVGPPGTGKTLLSRAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFDQAKRNAPCIVFIDEIDAVGRQRGAGLGGSHDEREQTLNQILVEMDGFDSSTNVIVIAATNRPDVLDPALLRPGRFDRQVVLDRPDLHGRLAILKVHTRGKPLESDVDLEDLARQTPGFSGADLENLVNEAAILAARRNKKTIGRRELYEAIDRVVAGPERKSRRISEREKLMTAYHEAGHALVARMLPHADPVHKVSIVARGMMGGYTRVLPEEDRFFWTKKQFEAQLAVFMAGLVAEELVFQEVSTGAANDIERATTLARRMVTEFGMSERLGPLAFGRKEELVFLGREIAEQRNYSDQVAYEIDQEVRRLIDQAYQTAKQILLDHMDKLEKIATLLVEKETLDGHEIEALFDEPRPRPELVGPPLTRPAALIATPETARPDSPSEARPAAPVPHIKPQPAS
SIO_010081: TRD_RS01380
subclass of: SO_0000673
so part of: TRD_RS01380
location: complement(296495..298453)
location: region:296495-298453:-1
so has part: feature:296495-298453:-1:exon

WP_012641703.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:296495-298453:-1:exon

TRD_RS15040
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: hpt
locus tag: TRD_RS15040
so part of: sequence
location: complement(298788..299345)
location: region:298788-299345:-1
so has part: feature:298788-299345:-1:exon
subclass of: SO_0000010

position:298788:-1
position: 298788
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:299345:-1
position: 299345
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:298788-299345:-1:exon

TRD_RS15040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: hpt
locus tag: TRD_RS15040
EC number: 2.4.2.8
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006680773.1
GO process: GO:0006166 - purine ribonucleoside salvage [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypoxanthine phosphoribosyltransferase
translation: MSETAQAPSGELERVLIDEATLQRRVAELGEEIARAYQGKRPVLIGVLTGAFVFMADLVRHLPIDLDIDFMAVSSYGQATVTSGVVRIIKDLDRPIEGRDVLLVEDIIDSGLTLQYLLDVLQRRNPRSLRVVVLLRKQKPGAVSVRADWVGFDIPDEFVVGYGLDAAGRFRNLPFIAVYRNAAQG
SIO_010081: TRD_RS15040
subclass of: SO_0000673
so part of: TRD_RS15040
location: complement(298788..299345)
location: region:298788-299345:-1
so has part: feature:298788-299345:-1:exon

WP_041436224.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:298788-299345:-1:exon

TRD_RS14055
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: tilS
locus tag: TRD_RS14055
old locus tag: trd_0295
pseudo: true
so part of: sequence
location: complement(<299418..300674)
location: region:299418-300674:-1
so has part: feature:299418-300674:-1:exon
subclass of: SO_0000010

position:299418:-1
position: 299418
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:300674:-1
position: 300674
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:299418-300674:-1:exon

TRD_RS14055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: tilS
locus tag: TRD_RS14055
old locus tag: trd_0295
inference: COORDINATES: protein motif:HMM:TIGR02432.1
GO function: GO:0016879 - ligase activity, forming carbon-nitrogen bonds [Evidence IEA]
GO process: GO:0006400 - tRNA modification [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: tRNA lysidine(34) synthetase TilS
SIO_010081: TRD_RS14055
subclass of: SO_0000673
so part of: TRD_RS14055
location: complement(<299418..300674)
location: region:299418-300674:-1
so has part: feature:299418-300674:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:299418-300674:-1:exon

TRD_RS01390
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01390
old locus tag: trd_0296
so part of: sequence
location: complement(300852..300923)
location: region:300852-300923:-1
so has part: feature:300852-300923:-1:exon
subclass of: SO_0000663

position:300852:-1
position: 300852
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:300923:-1
position: 300923
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:300852-300923:-1:exon

TRD_RS01390
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 309801
locus tag: TRD_RS01390
old locus tag: trd_0296
product: tRNA-Met
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(300889..300891),aa:Met,seq:cat)
SIO_010081: TRD_RS01390
subclass of: SO_0000673
so part of: TRD_RS01390
location: complement(300852..300923)
location: region:300852-300923:-1
so has part: feature:300852-300923:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:300852-300923:-1:exon

TRD_RS01395
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01395
old locus tag: trd_0297
so part of: sequence
location: complement(301208..302023)
location: region:301208-302023:-1
so has part: feature:301208-302023:-1:exon
subclass of: SO_0000010

position:301208:-1
position: 301208
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:302023:-1
position: 302023
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:301208-302023:-1:exon

TRD_RS01395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01395
old locus tag: trd_0297
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012643179.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SDR family NAD(P)-dependent oxidoreductase
translation: MGRLTGLVALVTGAGGGEMGGGGAGIARVLAREGAIVAVNDLHEDYARATVDQITRNGGQSFALAGDVSDPRQANELVSSVIARCGRLDILVNDAARLGRTPAVERMSDEEWHSYIAVNLSGPFYMSRAAIPHMMQREYGRIINIASLAALRASLNGGAGYTSSKRGLLGLTRQLAAEFYTYNITVNAVLPAGILSGRLRAEMGEHAEALVATRRWALPDDIGQICAYLASPEAHLISASVIVVPGVNATGLGDFAQYRAMARQIGKDIGE
SIO_010081: TRD_RS01395
subclass of: SO_0000673
so part of: TRD_RS01395
location: complement(301208..302023)
location: region:301208-302023:-1
so has part: feature:301208-302023:-1:exon

WP_012641706.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:301208-302023:-1:exon

TRD_RS01400
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01400
old locus tag: trd_0298
so part of: sequence
location: complement(302041..302862)
location: region:302041-302862:-1
so has part: feature:302041-302862:-1:exon
subclass of: SO_0000010

position:302041:-1
position: 302041
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:302862:-1
position: 302862
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:302041-302862:-1:exon

TRD_RS01400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01400
old locus tag: trd_0298
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012642513.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SDR family NAD(P)-dependent oxidoreductase
translation: MQRQQRFDLNGMVALVTGAGGGSRGGLGPLIARALAESGSRIAINDRTPERARETVAELRAAGYDAVEAFPADVANSAQVDRLIAQVVERFGQLDILVNKAEAHGSGRRSDQVSDDEWESLLAVNTHAPFYLSRAAVRHMRQRRFGRIIHVSHITASRTSALNGVAYVAAKEALYGLIRHLSIEVAQHGITVNAILPGFIVTPKLLHGWEEERVQRLAETIPIRRAGTPEEVAALVVFLASHEASYITGAAIPIDGAVSVVPGGRTDPASAFA
SIO_010081: TRD_RS01400
subclass of: SO_0000673
so part of: TRD_RS01400
location: complement(302041..302862)
location: region:302041-302862:-1
so has part: feature:302041-302862:-1:exon

WP_012641707.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:302041-302862:-1:exon

TRD_RS01405
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01405
old locus tag: trd_0299
so part of: sequence
location: complement(303248..304294)
location: region:303248-304294:-1
so has part: feature:303248-304294:-1:exon
subclass of: SO_0000010

position:303248:-1
position: 303248
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:304294:-1
position: 304294
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:303248-304294:-1:exon

TRD_RS01405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01405
old locus tag: trd_0299
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSVHQMAEPTLEAVRHAREAIEYCYERGWTDGLPVVPPAEEFVAEFLAQTDRDPEEVVIEQEHLGRKCTVRLAAANAVMAGCKPDYFPVVLAALEALDRVPGSRGLLQSTTGQAVFVVVNGPIRHRLGFNARDNVFSPGDRPNATIGRAIRLVIMNALGIRPHEFDQSTHGQPGKFSLCIAENEEESPWEPLHVERGFAQDESTVTVGLVRGTIQVEQRDSQHPEVILETIADSMSYAGTYFPTPRGHAGIVVMGPEHAQLIAAAGWSKTRARQYLWEHFGRPAGVLRRLAKDALLDASLPDDAFVRFAHSPETILIVVAGARNAGISTVCPTFIGQQITIPIRTKSS
SIO_010081: TRD_RS01405
subclass of: SO_0000673
so part of: TRD_RS01405
location: complement(303248..304294)
location: region:303248-304294:-1
so has part: feature:303248-304294:-1:exon

WP_012641708.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:303248-304294:-1:exon

TRD_RS15240
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS15240
old locus tag: trd_0300
so part of: sequence
location: complement(304272..304841)
location: region:304272-304841:-1
so has part: feature:304272-304841:-1:exon
subclass of: SO_0000010

position:304272:-1
position: 304272
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:304841:-1
position: 304841
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:304272-304841:-1:exon

TRD_RS15240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS15240
old locus tag: trd_0300
inference: COORDINATES: similar to AA sequence:RefSeq:WP_273701388.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl except: (pos:complement(304557..304559),aa:Sec)
transl table: 11
product: UGSC family (seleno)protein
translation: MPILVDPTGQTGLVTKAKAPRVRRSLHGARVCLIDNGKKNADLLLRNIGEILQEQHGVAELITYRKQSISVPVDPAAISELRKRCDFAIAAIGDUGSCSAASVADAIRFEEQGIPSAAIITEAFRTTADAMAQAQGMPDYPYAVIPHPVSSLSPEEVRQRAEQVVPELLRLLGVEDAAAEGRHERASDG
SIO_010081: TRD_RS15240
subclass of: SO_0000673
so part of: TRD_RS15240
location: complement(304272..304841)
location: region:304272-304841:-1
so has part: feature:304272-304841:-1:exon

WP_273701388.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:304272-304841:-1:exon

TRD_RS01415
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01415
old locus tag: trd_0301
so part of: sequence
location: complement(304841..305113)
location: region:304841-305113:-1
so has part: feature:304841-305113:-1:exon
subclass of: SO_0000010

position:305113:-1
position: 305113
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:304841-305113:-1:exon

TRD_RS01415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01415
old locus tag: trd_0301
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSASPTVLRAIDRALDRIREGLAPDGFELRVERVTDEGIVELVLQALPDACLDCLVPDQLLDAMLRQAIAPVYPALREVRLEKRLPEEGR
SIO_010081: TRD_RS01415
subclass of: SO_0000673
so part of: TRD_RS01415
location: complement(304841..305113)
location: region:304841-305113:-1
so has part: feature:304841-305113:-1:exon

WP_012641709.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:304841-305113:-1:exon

TRD_RS01420
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01420
old locus tag: trd_0302
so part of: sequence
location: complement(305169..305861)
location: region:305169-305861:-1
so has part: feature:305169-305861:-1:exon
subclass of: SO_0000010

position:305169:-1
position: 305169
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:305861:-1
position: 305861
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:305169-305861:-1:exon

TRD_RS01420
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01420
old locus tag: trd_0302
inference: COORDINATES: protein motif:HMM:TIGR02428.1
GO function: GO:0008410 - CoA-transferase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 3-oxoacid CoA-transferase subunit B
translation: MPLTREGIAYRIAHDLPDGSFVNLGFGMPSLVTHFLPLGKTVLIHSENGILGAGPKAPPGQEDPDLVNANGDFVTLVPGASLFDHALSFTIVRGGHLTHAVLGALQVSRRGDLANWRIPGARVPGVGGAMDIAVGAQRVWVAMTHTTDHGEPKIVEECTYPLTAPRCVQRIYTDLAVLSVVGGELLLEEVAPGVTVQDVTARTGASLTIPSRVPTMDIPAELAGIQLVTV
SIO_010081: TRD_RS01420
subclass of: SO_0000673
so part of: TRD_RS01420
location: complement(305169..305861)
location: region:305169-305861:-1
so has part: feature:305169-305861:-1:exon

WP_012641710.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:305169-305861:-1:exon

TRD_RS01425
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01425
old locus tag: trd_0303
so part of: sequence
location: complement(305873..306571)
location: region:305873-306571:-1
so has part: feature:305873-306571:-1:exon
subclass of: SO_0000010

position:305873:-1
position: 305873
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:306571:-1
position: 306571
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:305873-306571:-1:exon

TRD_RS01425
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01425
old locus tag: trd_0303
inference: COORDINATES: protein motif:HMM:TIGR02429.1
GO function: GO:0008410 - CoA-transferase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 3-oxoacid CoA-transferase subunit A
translation: MDRVVASCDEAVADIPNGASIMIGGFGPPGVPVNLVRALRQRGLHDLVLIYCGGGTEEDGIGGLIADGAVRKLITSFPVHPGAHAVRERYLQGEIELEVVPQGTFVERIRAAGAGLGGFYSPTGVGTELAAGKEVRLIDGRAFVLELPLPADYALIKAFRADQWGNLVYRRTMRNFNPIMATAARMVIAEVDEVVPVGSLSPEEIETPCLFVDRVVEVPRDWFRHATSAERR
SIO_010081: TRD_RS01425
subclass of: SO_0000673
so part of: TRD_RS01425
location: complement(305873..306571)
location: region:305873-306571:-1
so has part: feature:305873-306571:-1:exon

WP_012641711.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:305873-306571:-1:exon

TRD_RS01430
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01430
old locus tag: trd_0305
so part of: sequence
location: 306839..309154
location: region:306839-309154:1
so has part: feature:306839-309154:1:exon
subclass of: SO_0000010

position:306839:1
position: 306839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:309154:1
position: 309154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:306839-309154:1:exon

TRD_RS01430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01430
old locus tag: trd_0305
inference: COORDINATES: protein motif:HMM:NF024754.2
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: UvrD-helicase domain-containing protein
translation: MLEERGNARGEPGSEDRSVTGEPERGGPFQMAGERLVPFSGMERILIGLDADQCVAVTTTEGPVLVVAGPGSGKTRVLTHRVAYLIGSGRARPWQIVAVTFTNKAAREIRERLGGLLGTESAQLVQAGTFHSLCVRILRRDGYRIGLEPAFTIYDEEDQLALVKQALRDLGLDPQRFSPRMLLGRLSRAKNDQHSPSDLQSMAQSYWDEVAARVYERYAQYLQRAQAVDFDDLLLRTVELFTEYPDVLAHYQDRWRYLQVDEYQDTNRLQYQLVRQLASGHRNLCVVGDPDQSIYSWRQADIRNILEFQRDFPDATVIRLGRNYRSTPQIVAAADAVIRVNRQRIERPLWTENPPGPPIRLLACWDEQQEAEMVVSEIDRLVRTGNARYRDIAVLYRINAQSRSVEEALVRRQIPYQVIGGVRFYERKEIKDALALLRVLVNPRDWLSLRRVLSETAFGRGIGEKTLLQLEQWGQRQQCSPADVLLLLVEEREEAPALAAATVRRLRELGGELVRLRAAMVEHPASQLFDLALERSGLAARYRDASDPTERERWENLVQLRSVLERYDTVPAAEGLPLFLEEAALVAAIDEAEMSGDQVTLLTLHAAKGLEFPVVFLIGVEEGLLPHARALESEAELEEERRLFYVGITRAKERLYLSYCSSRNRFGLRERCLPSHFLDDLPPDVVEAGSRASERVPRVAPPAGGHAGPVESSAPVVPRLRAGQRVFHPAFGDGFVVAVREQAGDQEVTVQFKRHGTKTLLASLAKLVVEE
SIO_010081: TRD_RS01430
subclass of: SO_0000673
so part of: TRD_RS01430
location: 306839..309154
location: region:306839-309154:1
so has part: feature:306839-309154:1:exon

WP_012641713.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:306839-309154:1:exon

TRD_RS01435
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: ppdK
locus tag: TRD_RS01435
old locus tag: trd_0306
so part of: sequence
location: 309221..311869
location: region:309221-311869:1
so has part: feature:309221-311869:1:exon
subclass of: SO_0000010

position:309221:1
position: 309221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:311869:1
position: 311869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:309221-311869:1:exon

TRD_RS01435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: ppdK
locus tag: TRD_RS01435
old locus tag: trd_0306
EC number: 2.7.9.1
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018003339.1
GO function: GO:0050242 - pyruvate, phosphate dikinase activity [Evidence IEA]
GO process: GO:0015976 - carbon utilization [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: pyruvate, phosphate dikinase
translation: MVSVATGRRWVFLFREGNAQLRDLLGGKGANLAEMTRIGLPVPPGFTVSTRACVAYLQGGRRMPEGLWEEVLEGLRDIEQQIGRRFGDPVQPLLVSVRSGAKFSMPGMMDTILNVGLTDETVLGLAAMTANERFAYDCYRRLIQMFGKVVLDIPSERFEDALDELKRELGVIHDYEIPAEHLQRLVQAYKEIVQQATGTPFPQDPFEQLRRAILAVFESWNNRRAIDYRNAHGIPHDLGTAANVQAMVFGNLGPDSATGVAFTRNPSTGEKGIFGEYLTNAQGEDVVAGIRTPQPIQEMAKDPLLRGAYEQLLDVADRLERHYRDMQDLEFTVERGKLWMLQTRTGKRTGRAAVKIAVDMVHEGLIDPREAVLRVSPDHLDQLLHPMLDPSWKGEPLAKGLPASPGAASGKVVFDADEAKVLGDRGEAVILVRLETSPDDFHGMLAARGILTARGGMTSHAAVVARGIGKPAVVGCSALVVDYERQEFRVGDVVVRRGDVITIDGSTGAVLLGEVPTIPPSVGGDLAELLDWADQFRRLRVRANADTPEDAAKARELGAEGIGLCRTEHMFFQGDRIWAMREMIMATTPEERRAALAKLEPMQREDFVGIFKAMAGFPVTIRTLDPPLHEFLPKHEEEIQAMAERLGVSPEAIRAKVQALTEANPMLGHRGCRLGITAPEITEMQARAIFTAALQCAAEGIEVHPEIMVPLVSDVRELMVQREIIDRVARQLFAEAGREIPYSIGTMIEVPRAALTASEIAREAEFFSFGTNDLTQMTYGISRDDAGRFLPYYLEHGIYPADPFQTLDRAGVGRLIEIARDGGRATRPAIKLGICGEHGGDPASIRFCHEVGLDYVSASPYRVPIARLAAAQAALGLREGDV
SIO_010081: TRD_RS01435
subclass of: SO_0000673
so part of: TRD_RS01435
location: 309221..311869
location: region:309221-311869:1
so has part: feature:309221-311869:1:exon

WP_012641714.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:309221-311869:1:exon

TRD_RS01440
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01440
old locus tag: trd_0307
so part of: sequence
location: 312107..313069
location: region:312107-313069:1
so has part: feature:312107-313069:1:exon
subclass of: SO_0000010

position:312107:1
position: 312107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:313069:1
position: 313069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:312107-313069:1:exon

TRD_RS01440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01440
old locus tag: trd_0307
inference: COORDINATES: protein motif:HMM:NF013098.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ring-cleaving dioxygenase
translation: MPEREILGIHHVTAVTGRATENVRFYTRVLGLRLVKKTVNQDDVSAYHLFYADAVGSPGTDVTFFDWPNLPPHRSGSGEIARIALRVDNAAALEWWVEWLQQHGVPGVEWGNYAGRQAVFFRDFEGQRLALVDDGGTVGGTPRDRSPVPPAYQIKGIFAVSLVVRSLEPTARVLTEVLGFRLRQEERSHARTALFEVGPGGPGALIVVEERPDQPRAQLGTGGVHHVAFRVSDDAAHQAWRARIAQAGIPVTPQIDRFYFRSLYFREPGGILFELATDGPGFAIDEDLEHLGERLSLPPFLEPRRAEIEANLRPLEPIEA
SIO_010081: TRD_RS01440
subclass of: SO_0000673
so part of: TRD_RS01440
location: 312107..313069
location: region:312107-313069:1
so has part: feature:312107-313069:1:exon

WP_012641715.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:312107-313069:1:exon

TRD_RS01445
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01445
old locus tag: trd_0308
so part of: sequence
location: complement(313147..313764)
location: region:313147-313764:-1
so has part: feature:313147-313764:-1:exon
subclass of: SO_0000010

position:313147:-1
position: 313147
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:313764:-1
position: 313764
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:313147-313764:-1:exon

TRD_RS01445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01445
old locus tag: trd_0308
EC number: 1.15.1.1
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013352894.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: superoxide dismutase
translation: MPYELPPLPYPYDALEPYIDARTMEIHHTGHHGAYVRNVNAALEKHPEIPGMPIEELLRRINEVPEDIRTAVRNNGGGHANHTIFWQIMGPNAGGEPTGELAQAIAETFGSFQQFKEQFSAAAAGVFGSGWAWLVLDQNGKLQIITRPNQDSPYMDNLYPVMGLDVWEHAYYLKYQNRRPEYIANWWNVVNWDAVAQRYREGLKR
SIO_010081: TRD_RS01445
subclass of: SO_0000673
so part of: TRD_RS01445
location: complement(313147..313764)
location: region:313147-313764:-1
so has part: feature:313147-313764:-1:exon

WP_012641716.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:313147-313764:-1:exon

TRD_RS01450
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01450
old locus tag: trd_0309
so part of: sequence
location: complement(314011..315609)
location: region:314011-315609:-1
so has part: feature:314011-315609:-1:exon
subclass of: SO_0000010

position:314011:-1
position: 314011
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:315609:-1
position: 315609
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:314011-315609:-1:exon

TRD_RS01450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01450
old locus tag: trd_0309
inference: COORDINATES: protein motif:HMM:NF013584.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: amidase
translation: MDDTASVALARQNLAALGIPVSDEDLEKAHAAGFFSTAQVFQVMVQRDSEVDDLPDFLTDRLPAPRSWAATGEESPSAAPEILELARALRNGETSSRALVERALEQITRRDQELNAFQLLLPEQALADAEARDAELARGIDRGPLHGLPVALKDLIDLAGTPTTAGSAILANAVASRDATVVQRLRAAGAVIVGKTRLPEFAYSGASNNPHYGPVPNPRDRRRDSGGSSSGSAAAVAAGLVVMAVGSDTGGSIRIPAAYCGIVGLKPTFGRVSARGVYPLAWSLDHIGPLTRTVTDAAVSLEAMAGPDEDDPRTRAVPLPDLVSATQVERLELRVGVVRSTGGDQPLAAPDAVAACERAVAALADAGADLIPLVLPELETLRIVSAAIAQLEAAALHAPTARERWTHYGEFFRLRLLGCFAYPCWGYVAAQRLAKKARARVTSLLEEHDIALLALPTTPTTAPPLGQWTARASWLTAPFNLLGWPALSVPAGLGDDGLPIGLQLVARPWREDLVIAAGALVERAARSSRGSN
SIO_010081: TRD_RS01450
subclass of: SO_0000673
so part of: TRD_RS01450
location: complement(314011..315609)
location: region:314011-315609:-1
so has part: feature:314011-315609:-1:exon

WP_012641717.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:314011-315609:-1:exon

TRD_RS01455
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01455
old locus tag: trd_0311
so part of: sequence
location: 315748..316428
location: region:315748-316428:1
so has part: feature:315748-316428:1:exon
subclass of: SO_0000010

position:315748:1
position: 315748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:316428:1
position: 316428
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:315748-316428:1:exon

TRD_RS01455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01455
old locus tag: trd_0311
inference: COORDINATES: protein motif:HMM:NF015682.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RraA family protein
translation: MPQAPLAPEVLRALQTLTTPTVANAIETFDVRPRNVGFMDTSIKCMFPHLGTMVGYAVTAKIRAAQPPRPGESVPRRAMWEYILTIPEPRIVVIEDLDDPPIGSFWGEVNANIHRALGCIGTVTNGGVRDLDEVERLGFHFFASQVQVSHAYVHVVEFGTPVTVGGLTVHPGDLLHGDKHGVIQIPLEIAPELYRAAKEVEARERRIIEACQAPGFTIDRLAELYG
SIO_010081: TRD_RS01455
subclass of: SO_0000673
so part of: TRD_RS01455
location: 315748..316428
location: region:315748-316428:1
so has part: feature:315748-316428:1:exon

WP_041435909.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:315748-316428:1:exon

TRD_RS01460
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01460
old locus tag: trd_0310
so part of: sequence
location: complement(316419..316853)
location: region:316419-316853:-1
so has part: feature:316419-316853:-1:exon
subclass of: SO_0000010

position:316419:-1
position: 316419
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:316853:-1
position: 316853
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:316419-316853:-1:exon

TRD_RS01460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01460
old locus tag: trd_0310
EC number: 1.11.1.-
inference: COORDINATES: protein motif:HMM:NF014608.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: OsmC family protein
translation: MARQQDSPLRCMVETTGGTIVSEAHPGVGGPGTASCSGDLLLAALAACAQITCQMVATALGIPLTRVSATAEGDLDLRGTLGVSREVPVGFGAIRLFIDIEAPDATPEQLASLREKTEQFCVIFHTLRQPPELSVQWSSSNAQP
SIO_010081: TRD_RS01460
subclass of: SO_0000673
so part of: TRD_RS01460
location: complement(316419..316853)
location: region:316419-316853:-1
so has part: feature:316419-316853:-1:exon

WP_226980724.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:316419-316853:-1:exon

TRD_RS01465
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01465
old locus tag: trd_0312
so part of: sequence
location: complement(316986..317900)
location: region:316986-317900:-1
so has part: feature:316986-317900:-1:exon
subclass of: SO_0000010

position:316986:-1
position: 316986
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:317900:-1
position: 317900
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:316986-317900:-1:exon

TRD_RS01465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01465
old locus tag: trd_0312
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: halocarboxylic acid dehydrogenase DehI family protein
translation: MRVASERSGDDVLEQLSEIWPKAAPARVQPVFEDLRTALRVPDIPFPFRLLAHWPPYLAFAVRQFSPFIRSLAFEAAADALRARAATSIGSPPRSERLAAARALILREHELAPKIVLILTAFAVGLRGRARESAPPLGTTLPAQEPITVRPAELPRTVDERIAPLPDLSTVLERGRVLLADLAALRGSPALDDFSRALAVSEPAAFAELLALRRSIEADRLAQVRSELLAQAERAVRRFTLPGARVLPDFMVPEPALAAIDAVVDRLRTIAAEAFLDVTLARVALDGFDAASSAPYPVHVAVDQ
SIO_010081: TRD_RS01465
subclass of: SO_0000673
so part of: TRD_RS01465
location: complement(316986..317900)
location: region:316986-317900:-1
so has part: feature:316986-317900:-1:exon

WP_012641720.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:316986-317900:-1:exon

TRD_RS13440
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS13440
old locus tag: trd_0313
so part of: sequence
location: 318000..319172
location: region:318000-319172:1
so has part: feature:318000-319172:1:exon
subclass of: SO_0000010

position:318000:1
position: 318000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:319172:1
position: 319172
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:318000-319172:1:exon

TRD_RS13440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS13440
old locus tag: trd_0313
inference: COORDINATES: protein motif:HMM:NF024760.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PrsW family intramembrane metalloprotease
translation: MQHRVQSAHSPVWPLTIGCLVVASSLGLCCVLSLALLETSPTAFLVGLVLAGILAPVYAAYLLFLDPLEHEPPWLLGLALAWGAGVATLSGGAATALLEAMTGTVLALDSDVSDTLGTIIFAPLTEEAAKGAFVFALFLLARHEFDDVLDGIVYGGLVGLGFAVVEDLIYYAAAFLEEGLSGVGLPFLVRGVLTGFGHPLFTAVTGLGLGLAVQARSSALRWLAPFAGLVGAILLHALWNGGVTLAQYDESGLLALLMLLGYPLLVLLPGAIGLAVLAVAQARRRARDVRRYLAEAVQLGLADTEDLAVLTSPWRRRARQLRYLTRYGGRAFWLRRRMDIALVDWAYRHWHRERGERLPRYLATFEAEAIAARIRRWRLELSTLLAAGTG
SIO_010081: TRD_RS13440
subclass of: SO_0000673
so part of: TRD_RS13440
location: 318000..319172
location: region:318000-319172:1
so has part: feature:318000-319172:1:exon

WP_081433373.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:318000-319172:1:exon

TRD_RS01475
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: rlmN
locus tag: TRD_RS01475
old locus tag: trd_0314
so part of: sequence
location: 319193..320332
location: region:319193-320332:1
so has part: feature:319193-320332:1:exon
subclass of: SO_0000010

position:319193:1
position: 319193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:320332:1
position: 320332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:319193-320332:1:exon

TRD_RS01475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: rlmN
locus tag: TRD_RS01475
old locus tag: trd_0314
EC number: 2.1.1.192
inference: COORDINATES: protein motif:HMM:TIGR00048.1
GO function: GO:0016433 - rRNA (adenine) methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO process: GO:0031167 - rRNA methylation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN
translation: MKSSGSITMMTVTEWTTPRPTGRVQRETLHDYTLGELEAWVEGRGLPRYRARQLFHWAYQQLVLEYESMSVLPKAVRSELSETLPISGLVPVRQRVSDDRETIKLLFRTRDDHFVETVVMFYPDRTTVCVSCQIGCAIGCSFCATGLSGLIRNLSAGEMVSQVVHAARLARERERRISNIVVMGMGEPFHNYDAVMRFVAIVNDRQGLGIGARHITLSTAGVVPFIDRLAEEPYQVKLAVSLHAPNDALRSQLVPINRRWPIDELLAACRRYVARTGRRVTFEYVLIEDVNDDERTAAELARRLRGLLCHVNLIPYNPTPAAPLFRRPGPERIERFRAVLERYGIPATVRYSRGVEIAAACGQLRAQEEARSRRRRATS
SIO_010081: TRD_RS01475
subclass of: SO_0000673
so part of: TRD_RS01475
location: 319193..320332
location: region:319193-320332:1
so has part: feature:319193-320332:1:exon

WP_012641722.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:319193-320332:1:exon

TRD_RS01480
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: larC
locus tag: TRD_RS01480
old locus tag: trd_0315
so part of: sequence
location: 320345..321565
location: region:320345-321565:1
so has part: feature:320345-321565:1:exon
subclass of: SO_0000010

position:320345:1
position: 320345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:321565:1
position: 321565
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:320345-321565:1:exon

TRD_RS01480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: larC
locus tag: TRD_RS01480
old locus tag: trd_0315
inference: COORDINATES: protein motif:HMM:TIGR00299.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: nickel pincer cofactor biosynthesis protein LarC
translation: MRVAYVDPFSGASGDMLLGALVDAGVPPEELADRLASALDVDGYRLVVERVVRRGLAGTQVRVIVEAAQPARDWAEIRDLLSASALPPRVKERALAVFRRLAEAEASVHSVPLESVHFHEVGAVDSIVDVVGVVWGFELLGVEEITCGPLPLSRGWVETAHGRLPVPAPATALLLAQAGAPLVPLDIEAELVTPTGAALLVELARFVRPAFLPERVGYGFGTRELPWPNALRLWIGEAFAVPSRLDEAELLLEANLDDMNPQFIEPLVDQLFAAGALDVYLTPIVMKRSRPAVIVSAICRAKDRPVLERVLFEHSTTFGVRGIPIERTKLARRSVAVATRWGEVAVKLKIVQDRIVDAVPEYRDCLAIHQRTGLPIREIWNEAARLAAVWIGQRVGEEDQEATLPE
SIO_010081: TRD_RS01480
subclass of: SO_0000673
so part of: TRD_RS01480
location: 320345..321565
location: region:320345-321565:1
so has part: feature:320345-321565:1:exon

WP_012641723.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:320345-321565:1:exon

TRD_RS01485
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01485
old locus tag: trd_0316
so part of: sequence
location: 321726..322550
location: region:321726-322550:1
so has part: feature:321726-322550:1:exon
subclass of: SO_0000010

position:321726:1
position: 321726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:322550:1
position: 322550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:321726-322550:1:exon

TRD_RS01485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01485
old locus tag: trd_0316
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003054657.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ZIP family metal transporter
translation: MLDWFWSLDPILQALLGGLLTWGATAAAAALVLLGRSIPRWLLDAMLGFAAGVMIAASVWSLLIPAMEVTERNGGIAWIPAATGLVAGALALRIVDRFLPHLHLFLPREAAEGVSTTWRRTTLLILAITLHNVPEGLAVGVAFGAAARVTDPLLALSLASGATALAIGIALQNVPEGLAIAVPLRREGFSPFRAFWYGQLSAIVEPLAALLGAAAVLFVEPLLPYALAFAAGAMLYVVVEELIPESQRGDHGDLATSGTIIGFTVMMVLDVALA
SIO_010081: TRD_RS01485
subclass of: SO_0000673
so part of: TRD_RS01485
location: 321726..322550
location: region:321726-322550:1
so has part: feature:321726-322550:1:exon

WP_012641724.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:321726-322550:1:exon

TRD_RS01490
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01490
old locus tag: trd_0317
so part of: sequence
location: 323276..324049
location: region:323276-324049:1
so has part: feature:323276-324049:1:exon
subclass of: SO_0000010

position:323276:1
position: 323276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:324049:1
position: 324049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:323276-324049:1:exon

TRD_RS01490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01490
old locus tag: trd_0317
inference: COORDINATES: protein motif:HMM:NF012235.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter ATP-binding protein
translation: MVRVSDVIKHFVHGKRQLRALDGVSFELPEGRFLVVVGPSGCGKTTLLRILAGLEQQDSGEVWMRPSRDGHPPFAMVFQEQSVFPWLTVRDNVAYGLKLRRVRGRQVEERASHWIRKVGLSGFERAYPHQLSGGMKQRVSIARAFAVDPDVLLMDEPFSALDEQMRTILQQEVSSLCEEQQKTVIFVTHSIDEALTLGDEVLVMTHRPGRVKRVIPVPFPRPRDVVEVRADPRYGELYEEIWGLIAEEVRRGPQEHR
SIO_010081: TRD_RS01490
subclass of: SO_0000673
so part of: TRD_RS01490
location: 323276..324049
location: region:323276-324049:1
so has part: feature:323276-324049:1:exon

WP_226980706.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:323276-324049:1:exon

TRD_RS01495
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01495
old locus tag: trd_0318
so part of: sequence
location: 324046..324879
location: region:324046-324879:1
so has part: feature:324046-324879:1:exon
subclass of: SO_0000010

position:324046:1
position: 324046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:324879:1
position: 324879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:324046-324879:1:exon

TRD_RS01495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01495
old locus tag: trd_0318
inference: COORDINATES: protein motif:HMM:NF012738.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter permease
translation: MMVEGGASVERTTMQRGRWLPQAGVKTEAAIQLLSPVALLALWEAAARAGWVDQRFFPAPSTIVGAFWDAITTGVLLHHLKITLWRVLLGTVIGGVPAVLIGLAMGMWRWLRLTLDPIIAATYPLPKSALFPLLLLIFGLGEGSKVSMVAIGVFYLAVTNAMEGVLAINPVYFDVAKTFGARRWDVIRTVALPGAMPLVLAGLRLGVGTGLILGVLAEMLGARDGLGYLLWSAWQTFSVSLLWATLFVTAILGFASVQLVDFLRRVLVPWQRGTARR
SIO_010081: TRD_RS01495
subclass of: SO_0000673
so part of: TRD_RS01495
location: 324046..324879
location: region:324046-324879:1
so has part: feature:324046-324879:1:exon

WP_012641726.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:324046-324879:1:exon

TRD_RS01500
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01500
old locus tag: trd_0321
so part of: sequence
location: complement(326254..326460)
location: region:326254-326460:-1
so has part: feature:326254-326460:-1:exon
subclass of: SO_0000010

position:326254:-1
position: 326254
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:326460:-1
position: 326460
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:326254-326460:-1:exon

TRD_RS01500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01500
old locus tag: trd_0321
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPMLEIVVARKEPLTTDQKRAFAREAVEIFHRVLGTPPGRLRLAFYELRPEESLDLLTDESSEDAHRH
SIO_010081: TRD_RS01500
subclass of: SO_0000673
so part of: TRD_RS01500
location: complement(326254..326460)
location: region:326254-326460:-1
so has part: feature:326254-326460:-1:exon

WP_012641729.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:326254-326460:-1:exon

TRD_RS01505
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01505
old locus tag: trd_0322
so part of: sequence
location: complement(326592..327587)
location: region:326592-327587:-1
so has part: feature:326592-327587:-1:exon
subclass of: SO_0000010

position:326592:-1
position: 326592
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:327587:-1
position: 327587
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:326592-327587:-1:exon

TRD_RS01505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01505
old locus tag: trd_0322
EC number: 1.13.11.2
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012642284.1
GO function: GO:0018577 - catechol 2,3-dioxygenase activity [Evidence IEA]
GO process: GO:0009712 - catechol-containing compound metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: catechol 2,3-dioxygenase
translation: MSTNGHAEPLFEVAQLAHVEIYTPDLDGTLWFFKELLGLEETERVGDSVYLRAYEDWYHHTLKVTKREKPGLGHVAWRTTSPQALERRVRALEEAGFGEGWIEGDRGHGRAYRFHTPDGHPMELLWEVEYYKTPAEAKTKLINRPQRRPLRGVPVRRIDHVNLLASDVTQNKQFLMDLLGFRLRENIQLNNGREAGAWLSVSPLVHEIAFMMDQSGAKGRLHHVCYWYGYPQHLNDIADVFSEVGIKIEAGPGKHGISQAMFMYVIEPGGNRVELFGDAGYLIFDPAWQPITWREEELDKGIIWFGSPLPAEFFLYGTPPVEAAEPARADD
SIO_010081: TRD_RS01505
subclass of: SO_0000673
so part of: TRD_RS01505
location: complement(326592..327587)
location: region:326592-327587:-1
so has part: feature:326592-327587:-1:exon

WP_012641730.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:326592-327587:-1:exon

TRD_RS15180
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS15180
old locus tag: trd_0323
so part of: sequence
location: complement(327744..329018)
location: region:327744-329018:-1
so has part: feature:327744-329018:-1:exon
subclass of: SO_0000010

position:327744:-1
position: 327744
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:329018:-1
position: 329018
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:327744-329018:-1:exon

TRD_RS15180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS15180
old locus tag: trd_0323
inference: COORDINATES: protein motif:HMM:NF015214.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 4-hydroxyphenylacetate 3-hydroxylase N-terminal domain-containing protein
translation: MAEWARMTYGWLGRSPDYKASFLGTLGANAPFYEPFSANARRWYQLGQERVLYWNHAIVNPPVDRNRPPDEVGDVYMHVERETDGGIYVSGAKVVATGSVLTHYNFIAHYGPLPIKDKKFALIFTVPMDAPGVKLISRPSYEYTAAVMGSPFDYPLSSRLDENDAVFIFDNVFVPWENVFVYGDVDKVNNFFPASGFIPRFTFHSCTRFAVKLDFIAGVLLKAVAATGTKDYRGVQAQVGEVIAWRNLFWAITDAMARNPIPWTDGYVHPNLEYGMAYRVLAPTAWSRVRQIILDNVASGLIYIPSHALDFQNPAERPYLEKYVRGAGGMDAHDRVKLMKLLYDATISEFAGRHELYERNYAGNHENIRLETLIVAEAVGTAERMRGFAEQCMAEYDLEGWLTPDLVNNEDVSFVLRRFRETQG
SIO_010081: TRD_RS15180
subclass of: SO_0000673
so part of: TRD_RS15180
location: complement(327744..329018)
location: region:327744-329018:-1
so has part: feature:327744-329018:-1:exon

WP_264353690.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:327744-329018:-1:exon

TRD_RS15185
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS15185
old locus tag: trd_0324
so part of: sequence
location: complement(328997..329305)
location: region:328997-329305:-1
so has part: feature:328997-329305:-1:exon
subclass of: SO_0000010

position:328997:-1
position: 328997
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:329305:-1
position: 329305
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:328997-329305:-1:exon

TRD_RS15185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS15185
old locus tag: trd_0324
inference: COORDINATES: protein motif:HMM:NF023222.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 4-hydroxyphenylacetate 3-hydroxylase N-terminal domain-containing protein
translation: MAQAVATRPFTGEEYLESLRDGREVYVYGERVTDVTTHPAFRNAARMVARLYDALHDPAKKDILTVETDTGNGGFTHPFFRAPPARSRTSSAPATPSPNGRV
SIO_010081: TRD_RS15185
subclass of: SO_0000673
so part of: TRD_RS15185
location: complement(328997..329305)
location: region:328997-329305:-1
so has part: feature:328997-329305:-1:exon

WP_012641732.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:328997-329305:-1:exon

TRD_RS15190
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS15190
old locus tag: trd_0326
so part of: sequence
location: complement(329563..329862)
location: region:329563-329862:-1
so has part: feature:329563-329862:-1:exon
subclass of: SO_0000010

position:329563:-1
position: 329563
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:329862:-1
position: 329862
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:329563-329862:-1:exon

TRD_RS15190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS15190
old locus tag: trd_0326
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: FAD-dependent oxidoreductase
translation: MADRTPDSTASYHWQPFPDGHFHTIPYRSLLSPELTNLLAIGRCTDAEPAALSSARVMGPCIAMGVAAAHAADLASIAQFSFRNTDLPHLQERLQPNLS
SIO_010081: TRD_RS15190
subclass of: SO_0000673
so part of: TRD_RS15190
location: complement(329563..329862)
location: region:329563-329862:-1
so has part: feature:329563-329862:-1:exon

WP_081433374.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:329563-329862:-1:exon

TRD_RS01520
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01520
old locus tag: trd_0328
so part of: sequence
location: 330454..331647
location: region:330454-331647:1
so has part: feature:330454-331647:1:exon
subclass of: SO_0000010

position:330454:1
position: 330454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:331647:1
position: 331647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:330454-331647:1:exon

TRD_RS01520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01520
old locus tag: trd_0328
inference: COORDINATES: protein motif:HMM:NF033788.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: metalloregulator ArsR/SmtB family transcription factor
translation: MGELLIGRPALKLEVAISVPLDLTSVISLVFRATDARRFERWLVEARKALGAEWEHDLDTLLGFSGRLLYYVEELLMSFDPFRPEHREAGFEDYIAHLKRLPAWAYRSMAIQAVLRVALDRGVLEAPPESEDAAAWRSFIEPGLTRADADEVVRLVLAPEQLKERTVRLLERFWRELYAAEFERALPAMRRALRQAKATTFASVAAAFEELSGHRLPDEVQLALPRVERVTFCPSYYLGNFVQFILYPPELILYFNCQRTSAATQPEVESVISPDLLPGLRALGDGTRLRIIELLRNGERYAQEIVGMLGISQSAVSRHLAMLEAAGIVTVRPANGMKYYAINSQRLRQIAEELERIGSVESFSTEHDKSNGLRAGFSRASGRSLLAEEKPPHSTVG
SIO_010081: TRD_RS01520
subclass of: SO_0000673
so part of: TRD_RS01520
location: 330454..331647
location: region:330454-331647:1
so has part: feature:330454-331647:1:exon

WP_012641736.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:330454-331647:1:exon

TRD_RS14070
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: ffs
locus tag: TRD_RS14070
so part of: sequence
location: 332349..332612
location: region:332349-332612:1
so has part: feature:332349-332612:1:exon
subclass of: SO_0000642

position:332349:1
position: 332349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:332612:1
position: 332612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:332349-332612:1:exon

TRD_RS14070
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 309801
nc RNA class: SRP_RNA
gene: ffs
locus tag: TRD_RS14070
product: signal recognition particle sRNA large type
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF01854
inference: COORDINATES: profile:INFERNAL:1.1.4
note: Derived by automated computational analysis using gene prediction method: cmsearch.
SIO_010081: TRD_RS14070
subclass of: SO_0000673
so part of: TRD_RS14070
location: 332349..332612
location: region:332349-332612:1
so has part: feature:332349-332612:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:332349-332612:1:exon

TRD_RS01525
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01525
old locus tag: trd_0329
so part of: sequence
location: complement(332689..333156)
location: region:332689-333156:-1
so has part: feature:332689-333156:-1:exon
subclass of: SO_0000010

position:332689:-1
position: 332689
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:333156:-1
position: 333156
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:332689-333156:-1:exon

TRD_RS01525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01525
old locus tag: trd_0329
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRNPFDWDYLTAPLWQMPTWGPLSITYVVVFSLGFLTCLWIYNDPRRLIRKRDPLLADFLQRIAGWGLIVFGIGLFFFLFRLGRISAFDLYKRIWLYLSALLVLVWTAYAAHLLLRVYPPLARQRAEELRRKQYAMTPKRAARRATSAASPRKPR
SIO_010081: TRD_RS01525
subclass of: SO_0000673
so part of: TRD_RS01525
location: complement(332689..333156)
location: region:332689-333156:-1
so has part: feature:332689-333156:-1:exon

WP_012641737.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:332689-333156:-1:exon

TRD_RS01530
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01530
old locus tag: trd_0330
so part of: sequence
location: complement(333169..333864)
location: region:333169-333864:-1
so has part: feature:333169-333864:-1:exon
subclass of: SO_0000010

position:333169:-1
position: 333169
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:333864:-1
position: 333864
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:333169-333864:-1:exon

TRD_RS01530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01530
old locus tag: trd_0330
EC number: 1.3.5.1
inference: COORDINATES: protein motif:HMM:NF004616.0
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: succinate dehydrogenase iron-sulfur subunit
translation: MQVTLRIQRFNPETDTKPYYREYTVEVEPTDRVLDALNYVKWYQDGSLTFRRSCAHGVCGSDAMRINGRNRLACKVLIKDLGPKITIEPLLGFRIIRDLVVDMEPFFAQYRTVMPYLINEEPPPVRERLQSPEERALYDDTTKCILCACCTSACPIFWTNEWLGPAAIVNAHRFLFDSRDRATEERLAILNQRFGVWRCRTIFNCTEACPRGIQVTNAIEQVKRRILFEQS
SIO_010081: TRD_RS01530
subclass of: SO_0000673
so part of: TRD_RS01530
location: complement(333169..333864)
location: region:333169-333864:-1
so has part: feature:333169-333864:-1:exon

WP_012641738.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:333169-333864:-1:exon

TRD_RS01535
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: sdhA
locus tag: TRD_RS01535
old locus tag: trd_0331
so part of: sequence
location: complement(333866..335596)
location: region:333866-335596:-1
so has part: feature:333866-335596:-1:exon
subclass of: SO_0000010

position:333866:-1
position: 333866
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:335596:-1
position: 335596
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:333866-335596:-1:exon

TRD_RS01535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: sdhA
locus tag: TRD_RS01535
old locus tag: trd_0331
inference: COORDINATES: protein motif:HMM:TIGR01816.1
GO function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
GO process: GO:0022900 - electron transport chain [Evidence IEA]; GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: succinate dehydrogenase flavoprotein subunit
translation: MVFHRFDAVIVGAGGAGLMAAAQLAGKCNVAVVSKLYPVRSHTGAAQGGIAAALGNVEEDHWIWHMFDTVKGGDYLVDQDAAEVLAREAIDAIIELEHWGFPFNRTPDGRIDQRRFGGHTRNFGEGPVRRACYAADRTGHMILQTLYQTALKRQVTFFDEFMMLDLLLTDDGVCTGIVAMDIETGDIHVFHAKAVLLATGGFGRVFKVTSNALAATGDGVAIAFRRGIPLEDMEFYQFHPTGIYKMGILLSEACRGEGGILRNGLGERFMERYAPTLLDLAPRDMVSRAIYQEIRAGRGVDGKDYVWLDLTHLPAEVIETKLPDITDFVRTYLGLDPVKDLIPIQPTAHYAMGGIPTDVDGRVTIDAQNTPIPGLYAAGECACVSVHGANRLGTNSLVDLVVFGRRAGRHMARFVQENDFHPLPKDPAYRARAEIEWIRENDGTERVAQIRAELQEAMMTDAGVFRTGDGLKRLQQKLGELRNRYTQIRIDDKSRTFNMELMEAIELGFLLDCAEAIAASALAREESRGAHYREDFPARDDANWLKHTLIARTSGGLQLFYKPVVITRFEPKERVY
SIO_010081: TRD_RS01535
subclass of: SO_0000673
so part of: TRD_RS01535
location: complement(333866..335596)
location: region:333866-335596:-1
so has part: feature:333866-335596:-1:exon

WP_012641739.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:333866-335596:-1:exon

TRD_RS01540
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01540
old locus tag: trd_0332
so part of: sequence
location: complement(335600..336013)
location: region:335600-336013:-1
so has part: feature:335600-336013:-1:exon
subclass of: SO_0000010

position:335600:-1
position: 335600
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:336013:-1
position: 336013
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:335600-336013:-1:exon

TRD_RS01540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01540
old locus tag: trd_0332
inference: COORDINATES: protein motif:HMM:NF013307.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: succinate dehydrogenase hydrophobic membrane anchor subunit
translation: MTIARPHLGRERPSGGFELYSWYYFRISGLLLILLAVGHVVIMHVVNTVDEIDWQFVADRWNSPFWRVYDWLLLFLALTHGLNGARLAIDDYVRPHGWRVFAHSVLWTLALLFLVIGSIAIVTFDPSKFEVVAQAGG
SIO_010081: TRD_RS01540
subclass of: SO_0000673
so part of: TRD_RS01540
location: complement(335600..336013)
location: region:335600-336013:-1
so has part: feature:335600-336013:-1:exon

WP_012641740.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:335600-336013:-1:exon

TRD_RS01545
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: sdhC
locus tag: TRD_RS01545
old locus tag: trd_0333
so part of: sequence
location: complement(336032..336451)
location: region:336032-336451:-1
so has part: feature:336032-336451:-1:exon
subclass of: SO_0000010

position:336032:-1
position: 336032
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:336451:-1
position: 336451
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:336032-336451:-1:exon

TRD_RS01545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: sdhC
locus tag: TRD_RS01545
old locus tag: trd_0333
inference: COORDINATES: protein motif:HMM:TIGR02970.1
GO component: GO:0045282 - plasma membrane succinate dehydrogenase complex [Evidence IEA]
GO function: GO:0000104 - succinate dehydrogenase activity [Evidence IEA]
GO process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: succinate dehydrogenase, cytochrome b556 subunit
translation: MTVTRAQESRSATTRGISAYRGYRPPPGMISWAFHRITGLGVLLFLLLHIVDIFLVNYGPEVFNELLFLYRHPVFRIGEIILVGAVYYHAANGVRIMLIDFWPAAYRYERQLFYGVMAVFLLAFIPTAFLMIRAIIQAG
SIO_010081: TRD_RS01545
subclass of: SO_0000673
so part of: TRD_RS01545
location: complement(336032..336451)
location: region:336032-336451:-1
so has part: feature:336032-336451:-1:exon

WP_012641741.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:336032-336451:-1:exon

TRD_RS01550
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01550
old locus tag: trd_0334
so part of: sequence
location: 336641..337762
location: region:336641-337762:1
so has part: feature:336641-337762:1:exon
subclass of: SO_0000010

position:336641:1
position: 336641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:337762:1
position: 337762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:336641-337762:1:exon

TRD_RS01550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01550
old locus tag: trd_0334
inference: COORDINATES: protein motif:HMM:NF013696.2
GO function: GO:0016787 - hydrolase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: M20/M25/M40 family metallo-hydrolase
translation: MLLSKEDSVIREACVRTINVACQIALVPAPTFEEGERAELVCELFRERGASPFIDDVGNVVVRRRGEGEKRALLLAAHLDTVFPRTTPLTIERGEGWVRGPGIGDNALGVAALLTLWDFLESFGVVLPGDLVLAANVGEEGLGNLRGMRALVDQFGRELGAAVAVEGHNLGRVTHIAVGSIRLRLIVRGPGGHSWGNFGTPSAIHELARIICALTELPVPRSPKTTYNVGMIDGGVSVNTIAPFAQAVIDLRSIDPRELQRLSRAVEELAARQRAAGVEVELELLGERPAGETPVDAPVVRTALQVLRALGIEPVLDASSTDANAAIAAGIPAICIGLTRGRGSHTLEETIEIAPLELGLRQLLQLVRAFPVI
SIO_010081: TRD_RS01550
subclass of: SO_0000673
so part of: TRD_RS01550
location: 336641..337762
location: region:336641-337762:1
so has part: feature:336641-337762:1:exon

WP_012641742.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:336641-337762:1:exon

TRD_RS01555
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01555
old locus tag: trd_0335
so part of: sequence
location: 337789..340737
location: region:337789-340737:1
so has part: feature:337789-340737:1:exon
subclass of: SO_0000010

position:337789:1
position: 337789
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:340737:1
position: 340737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:337789-340737:1:exon

TRD_RS01555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01555
old locus tag: trd_0335
inference: COORDINATES: protein motif:HMM:NF024703.2
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
GO process: GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helicase C-terminal domain-containing protein
translation: MPRIYVALDIEATGMDPERDEIIEVAAIKFREEEVLERFETLVQPRRPVPLAVASLTGLTMRDLRRAPSFQQIAPRLRQFVRNYPIVGQSPDYDLQMLSAHGLELRNPVYDTFRLATILLPDLPAYSLAGIAARLGISVAQQHRAMADVETTMAVFLGLCDLLRAYDPETLRRLADYSAQAGLPEAEVFEAIYHELVTQGIGQLGDALAERVRSSVPGANHAAELVFLLPSDRPPRLEPTGEAPVFDLDWIGRLYGPEGPFARSLPGYEFRAGQVRMAQAVTNVLNQGGQLLVEAGTGTGKSLAYLLPAVLHAVARGETVVVSTDTLALQDQLFAKDLPLLRRALEAAAEHDPRLADAARFRATVLKGRSNYLCLRRWFLRQREPFTSRAEALLAAKITAWLAQTETGDRAELHLSNEEQLAWAQVAESEGACLPSRCLFHRRNQCFLYRARATAEGAHIVIVNHALLLSDLLAESRVLPSYRHLIIDEAHHLVDEATQQFGFQIAHEDMRELVRRVLGLDHLGRYTGVLGELWSVLAQRPDGSARAVARELGQRLTDLWPRVETLHQHTEMLFHLLAEVAQRHPVENGGYDRQIRITGALRQETIWGTVEELGQTVTSHLRTVLSALQWVSHRLEDLPAAIRDELSELVTELDVLERRARELHGRLQEILFSPRVERVYWLTWRAQPLSVSLNMAPLDVAPLLQEMLFSRVDTLVLTSATLTVDRSFDYIRQQLGLADADELVVESPFDYASSTLLCLAEDMAEPGEPGYQRQVNEALLALLRVTRGRALVLFTSHSALQAAYRAIKRPLEQEGILVLGQRLDGSPRQLVERLKARPATVVLGTNAVWEGVDVPGEALSVLVIAKLPFAVPSDPVFAARCESYSDPFQEYAVPQAVLRFKQGFGRLIRSTRDYGVCVVLDRRVTTRRYGQLFVQSLPPCTVKRVPVAQIPRLAQDWLVRQQDRLAARVPAEGGSGDGSAGS
SIO_010081: TRD_RS01555
subclass of: SO_0000673
so part of: TRD_RS01555
location: 337789..340737
location: region:337789-340737:1
so has part: feature:337789-340737:1:exon

WP_012641743.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:337789-340737:1:exon

TRD_RS01560
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: glpX
locus tag: TRD_RS01560
old locus tag: trd_0336
so part of: sequence
location: 340727..341725
location: region:340727-341725:1
so has part: feature:340727-341725:1:exon
subclass of: SO_0000010

position:340727:1
position: 340727
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:341725:1
position: 341725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:340727-341725:1:exon

TRD_RS01560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: glpX
locus tag: TRD_RS01560
old locus tag: trd_0336
EC number: 3.1.3.11
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020059785.1
GO function: GO:0042132 - fructose 1,6-bisphosphate 1-phosphatase activity [Evidence IEA]
GO process: GO:0006094 - gluconeogenesis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: class II fructose-bisphosphatase
translation: MDRNLAMELVRTTEAAALAAAQWVGRGDKNAADAAAVQAMRRMLSTVHMKGIVVIGEGEKDQAPMLYIGEEVGTGEPPESDLAVDPIDGTRLCANGMPGAVSVVALAERGSMYYPPGIVYMNKIAVGPEAAHAIDIRLSPTENLHRIAEAKRMSVRLLTVVVLDRPRHQALIEEIRRAGARIRLITDGDVAGAVMTAFPESGVDVLMGIGGSPEAVVAAAALKCVGGAIQCTLYPRDEEERQRARELGLELEKVFTADDLVRSDNVFFAMTGITTGDLVEGVRFTRHGAETHSIVMRSRTGTIRRIAAEHRLAKVQEYQTIAFDTDGRVMVE
SIO_010081: TRD_RS01560
subclass of: SO_0000673
so part of: TRD_RS01560
location: 340727..341725
location: region:340727-341725:1
so has part: feature:340727-341725:1:exon

WP_226980726.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:340727-341725:1:exon

TRD_RS01565
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: rho
locus tag: TRD_RS01565
old locus tag: trd_0337
so part of: sequence
location: 342050..343354
location: region:342050-343354:1
so has part: feature:342050-343354:1:exon
subclass of: SO_0000010

position:342050:1
position: 342050
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:343354:1
position: 343354
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:342050-343354:1:exon

TRD_RS01565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: rho
locus tag: TRD_RS01565
old locus tag: trd_0337
EC number: 3.6.4.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017492510.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0008186 - ATP-dependent activity, acting on RNA [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
GO process: GO:0006353 - DNA-templated transcription termination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transcription termination factor Rho
translation: MDPVAPTTTTVEEVKETPTLTAAELQDKSLEELQTIARDFGIPNAQRLRKMELVNKILRAQIEREGGIFGEGVLEITEDGFGFLRGERYLPGPNDVYVSQSQIRRFGLRQGDWVAGQVRPPKENEKYYSLLRVDAVNGMDPELARRRPSFDTLTPIFPMELINLETEPHILSTRLVNLVAPIGRGQRGLIVSPPKAGKTVLLKHIANGITTNYKDIHLIVLLIGERPEEVTDMRRSVDGEVISSTFDEPVEDHIRVAEMTLERAKRLVECGMDVVILLDSITRLARAYNLSVPPSGRTLSGGIDPVALYPPKRFFGAARNIEGGGSLTIIATCLVDTGSRMDDVIYEEFKGTGNMELHLDRKLAERRIFPAIDIQRSGTRREELLLDEQTLRQVWTMRRMVSMLGGTDGTELVLGRLARTQNNAEFLATLHKDL
SIO_010081: TRD_RS01565
subclass of: SO_0000673
so part of: TRD_RS01565
location: 342050..343354
location: region:342050-343354:1
so has part: feature:342050-343354:1:exon

WP_012641745.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:342050-343354:1:exon

TRD_RS01570
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01570
old locus tag: trd_0338
so part of: sequence
location: 343376..343816
location: region:343376-343816:1
so has part: feature:343376-343816:1:exon
subclass of: SO_0000010

position:343376:1
position: 343376
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:343816:1
position: 343816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:343376-343816:1:exon

TRD_RS01570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01570
old locus tag: trd_0338
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVREPLVRSPEREWSDRDILMLVAVAATAVLWPIGLLLTWASVRWRLRDKLIATILPLAGLILSLVILPAGARGIGLSGPSGLAWTVEVGHYAGLVGAPLLAALYLGIRARLPARLLGGLVLLALAILALGQLAFFLGGRLHPGGA
SIO_010081: TRD_RS01570
subclass of: SO_0000673
so part of: TRD_RS01570
location: 343376..343816
location: region:343376-343816:1
so has part: feature:343376-343816:1:exon

WP_052294032.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:343376-343816:1:exon

TRD_RS15060
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS15060
old locus tag: trd_0339
so part of: sequence
location: complement(343822..344580)
location: region:343822-344580:-1
so has part: feature:343822-344580:-1:exon
subclass of: SO_0000010

position:343822:-1
position: 343822
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:344580:-1
position: 344580
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:343822-344580:-1:exon

TRD_RS15060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS15060
old locus tag: trd_0339
inference: COORDINATES: protein motif:HMM:NF024109.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: alpha/beta hydrolase
translation: MPFCDLSHVRLYYSRAGTGPPVILLHQYFGTSESWLAIFDTLRRSFDVIAPDLRAHGRSSDPGGRLTLPGFTTDIAELVRRLGIESAHLVGASLGAMVATRLAVEGAIHPRSLVLIGPPNFAAPSTAAYTRQIIEEQFPSNEAEYAHLHRAHGPHHARDRLLANFIRDSKEQPPEMREWQAGVESLTCPVLLMSGDNDPVAPAPWLVDIASRLPAGELCLLPRAGHFPHRLLPHIAGLVLLDFLLRAERASS
SIO_010081: TRD_RS15060
subclass of: SO_0000673
so part of: TRD_RS15060
location: complement(343822..344580)
location: region:343822-344580:-1
so has part: feature:343822-344580:-1:exon

WP_012641747.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:343822-344580:-1:exon

TRD_RS15195
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS15195
old locus tag: trd_0340
so part of: sequence
location: 344668..344865
location: region:344668-344865:1
so has part: feature:344668-344865:1:exon
subclass of: SO_0000010

position:344668:1
position: 344668
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:344865:1
position: 344865
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:344668-344865:1:exon

TRD_RS15195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS15195
old locus tag: trd_0340
inference: COORDINATES: protein motif:HMM:NF021347.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC-ATPase domain-containing protein
translation: MRDVSALRTILRRIDRRGYKAYEELRGFFRLGDIILAIDHVQGDPYAPPSRVRVIVERSRLVFPP
SIO_010081: TRD_RS15195
subclass of: SO_0000673
so part of: TRD_RS15195
location: 344668..344865
location: region:344668-344865:1
so has part: feature:344668-344865:1:exon

WP_012641748.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:344668-344865:1:exon

TRD_RS01580
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01580
old locus tag: trd_0342
so part of: sequence
location: 344889..346388
location: region:344889-346388:1
so has part: feature:344889-346388:1:exon
subclass of: SO_0000010

position:344889:1
position: 344889
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:346388:1
position: 346388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:344889-346388:1:exon

TRD_RS01580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01580
old locus tag: trd_0342
inference: COORDINATES: protein motif:HMM:NF021347.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC-ATPase domain-containing protein
translation: MEDFLARRARRAIDRVGRRRTGTGRSGIIQVDAGGQEVLERTACRISDDRVELRLSVGLPAAGRTVLGDVAEDLLTAALPEIARYALWLDRTALQEAERFIAVVEDAEALREQLPRAGLVAFIGRGAILPRRSGVSQEPLTDGVVPFEPPPSLEVELATPHSGRLRGMGIPEGVTLIVGGGFHGKSTLLEALARGVYNHIPGDGRERVVTRADAVVIRAEDGRRVVGVDLSPFIRDLPLGRSTTCFTSEDASGSTSQASNILEALEAGARVLLMDEDTCATNFMIRDHLMRELVPAEAEPIVPFIDRVRQLHREAGVSTILVMGGAGDYLHVADTVIWMHAYHPRDVTARAHELARQHGNGVFAPPNPWPGVVQRVPIPESIDPRRRERTRIKAHGTEEVTFGYESIDLRHVEQLVDPSQVRAIGLALAYAVEHDIIDGKRALSAILDLVDEIVDREGLDILSPYRGHPGDLARPRRYELAAALNRLRSLEVRQVRLAP
SIO_010081: TRD_RS01580
subclass of: SO_0000673
so part of: TRD_RS01580
location: 344889..346388
location: region:344889-346388:1
so has part: feature:344889-346388:1:exon

WP_012641749.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:344889-346388:1:exon

TRD_RS01585
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01585
old locus tag: trd_0341
so part of: sequence
location: complement(346339..347136)
location: region:346339-347136:-1
so has part: feature:346339-347136:-1:exon
subclass of: SO_0000010

position:346339:-1
position: 346339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:347136:-1
position: 347136
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:346339-347136:-1:exon

TRD_RS01585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01585
old locus tag: trd_0341
EC number: 2.1.1.193
inference: COORDINATES: protein motif:HMM:NF008692.0
GO function: GO:0008168 - methyltransferase activity [Evidence IEA]
GO process: GO:0006364 - rRNA processing [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 16S rRNA (uracil(1498)-N(3))-methyltransferase
translation: MSRRGHRFFVTEHLELGARVTLPRRVSHQLVRVLRLRPGDRVLLCDGRAIDFVAELIELDPERTVAVLVDAQPARPLPPPPIVLLQALLRHDHFDLVVEKATELGIVRIVPLHTQRTVVHLALRDVTQRLARWQRIAMEASEQCGRGTLPEIDTPSTLDRALATVRTARLLVFWEAPEAEAIAHASFSPDQTVTVAVGPEGGWTAEEIALFRRHGAEFRSLGPLILRAETAAISGIAAVQARTRPTRPQFREPGEPAAPPGSSAG
SIO_010081: TRD_RS01585
subclass of: SO_0000673
so part of: TRD_RS01585
location: complement(346339..347136)
location: region:346339-347136:-1
so has part: feature:346339-347136:-1:exon

WP_012641750.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:346339-347136:-1:exon

TRD_RS01590
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: prmA
locus tag: TRD_RS01590
old locus tag: trd_0343
so part of: sequence
location: complement(347133..348053)
location: region:347133-348053:-1
so has part: feature:347133-348053:-1:exon
subclass of: SO_0000010

position:347133:-1
position: 347133
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:348053:-1
position: 348053
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:347133-348053:-1:exon

TRD_RS01590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: prmA
locus tag: TRD_RS01590
old locus tag: trd_0343
inference: COORDINATES: protein motif:HMM:NF018076.2
GO function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO process: GO:0036211 - protein modification process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 50S ribosomal protein L11 methyltransferase
translation: MPARWLEVAVETDAEVADAVAELFARFGYQQGAAVFHPVAQDPDGENATIDPATPVLIATYLPLDEQVDATVERLRHGLWHLSQLGRIGELRLRTLAEEEWAEAWKSHFPVTRIGHRIVIRPSWIPYESRDDEIVVHLDPGMAFGTGLHPTTQHCLLWLERLVTPGMSVLDAGAGSGILSIAALALGARSVTAWEIDPVAGEVLRENLERNGVADRATVRIGDVTEDLTDREAYDLVVANIVARVLIEAGPRLVRAARPGAHLVLSGIIDTAEEGVRRRYHDLGTELVERRQDGDWVSLLLRRNRP
SIO_010081: TRD_RS01590
subclass of: SO_0000673
so part of: TRD_RS01590
location: complement(347133..348053)
location: region:347133-348053:-1
so has part: feature:347133-348053:-1:exon

WP_012641751.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:347133-348053:-1:exon

TRD_RS01595
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01595
old locus tag: trd_0344
so part of: sequence
location: complement(348058..349050)
location: region:348058-349050:-1
so has part: feature:348058-349050:-1:exon
subclass of: SO_0000010

position:348058:-1
position: 348058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:349050:-1
position: 349050
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:348058-349050:-1:exon

TRD_RS01595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01595
old locus tag: trd_0344
inference: COORDINATES: protein motif:HMM:NF012695.2
GO function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
GO process: GO:0009058 - biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: sugar phosphate nucleotidyltransferase
translation: MHVVIPVAGLGTRLRPHTWSKPKPLVTVAGKPILGHVLDRLNRLPLQRVVFVTGYLGEQIEEYVRTHYRFDAVFVEQPEPLGQSHALLQAKGLVHGPTLVVFPDLVFDANLEAVLTCPWDGIVFVKEVDDPRRFGVVIVEDGRIAQLVEKPAQPVSRLAVVGVYYFRDFGDLIAAIEQQIAEGRKRGNEYYLAEAIQILIDRGRTIVAQPVSVWEDCGTVEALLETNRFLLDRQAGPQPSFPTAVVVPPVVIDPTARIEHAVIGPYVSIGPGAVVSHAIVTDSIIDEEATINGVMLHRSIVGRRARVLGDFVRVNVGDSSEITFSGRDGA
SIO_010081: TRD_RS01595
subclass of: SO_0000673
so part of: TRD_RS01595
location: complement(348058..349050)
location: region:348058-349050:-1
so has part: feature:348058-349050:-1:exon

WP_012641752.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:348058-349050:-1:exon

TRD_RS01600
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01600
old locus tag: trd_0345
so part of: sequence
location: complement(349228..349301)
location: region:349228-349301:-1
so has part: feature:349228-349301:-1:exon
subclass of: SO_0000663

position:349228:-1
position: 349228
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:349301:-1
position: 349301
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:349228-349301:-1:exon

TRD_RS01600
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 309801
locus tag: TRD_RS01600
old locus tag: trd_0345
product: tRNA-Glu
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(349265..349267),aa:Glu,seq:ttc)
SIO_010081: TRD_RS01600
subclass of: SO_0000673
so part of: TRD_RS01600
location: complement(349228..349301)
location: region:349228-349301:-1
so has part: feature:349228-349301:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:349228-349301:-1:exon

TRD_RS13455
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS13455
old locus tag: trd_0346
so part of: sequence
location: 349381..349992
location: region:349381-349992:1
so has part: feature:349381-349992:1:exon
subclass of: SO_0000010

position:349381:1
position: 349381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:349992:1
position: 349992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:349381-349992:1:exon

TRD_RS13455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS13455
old locus tag: trd_0346
inference: COORDINATES: protein motif:HMM:NF021384.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2085 domain-containing protein
translation: MDHPHFAPTPTAVVRADRVEAVVNRSVAFWARHWLAGLNLLAGVFAFLPLLAPWLLAQGHTTLAYGIYFAYRFVCHQKPERSFFLFGHQMAYCQRDLAIYLGVFALGMVYAVVRRWLRPLSWRGAFLLSMPMAIDGLTQLVGLRESTWQLRVFTGVSFALATVWFVYPRLESGFAEVRAVLAARSLQIERGAEGTSCGQGAGE
SIO_010081: TRD_RS13455
subclass of: SO_0000673
so part of: TRD_RS13455
location: 349381..349992
location: region:349381-349992:1
so has part: feature:349381-349992:1:exon

WP_012641753.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:349381-349992:1:exon

TRD_RS01610
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: coaBC
locus tag: TRD_RS01610
old locus tag: trd_0347
so part of: sequence
location: 349979..351181
location: region:349979-351181:1
so has part: feature:349979-351181:1:exon
subclass of: SO_0000010

position:349979:1
position: 349979
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:351181:1
position: 351181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:349979-351181:1:exon

TRD_RS01610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: coaBC
locus tag: TRD_RS01610
old locus tag: trd_0347
EC number: 4.1.1.36
EC number: 6.3.2.5
inference: COORDINATES: protein motif:HMM:TIGR00521.1
GO function: GO:0004632 - phosphopantothenate--cysteine ligase activity [Evidence IEA]; GO:0004633 - phosphopantothenoylcysteine decarboxylase activity [Evidence IEA]
GO process: GO:0015937 - coenzyme A biosynthetic process [Evidence IEA]; GO:0015939 - pantothenate metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC
translation: MLANKRVVVGVTGGIAAYKTVELVRRLIQGGAIVDVVMTEAATAFVGSLTFQAITRRPVQVTTVGVWEGEQAGHVTLGAAADVMIIAPATADALAKLAHGLADDAVTLTALACPAPLIVAPAMDQYMYLHPATQENLERLRRRGVTVIGPHRGPLASGMVGEGRMAEPEELFGAVRAVLGRAGPLAGCRVVVTAGPTREAIDPVRFLSNHSSGKMGYALAEVARDRGAGTTLISGPTCLPAPFGVRFVAVESAAEMAAAVEEAISDADVLVMCAAVADFRPRQVSAEKIKKRTASLLLELEPTPDILASVARPGLLKVGFAAETERLLEHGHEKLVQKGIDLLVINDARRTMGAETARVTLLRRGREPEGLPDLPKEEVAERIWDAIQELLAERERVAQG
SIO_010081: TRD_RS01610
subclass of: SO_0000673
so part of: TRD_RS01610
location: 349979..351181
location: region:349979-351181:1
so has part: feature:349979-351181:1:exon

WP_041436256.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:349979-351181:1:exon

TRD_RS01615
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01615
old locus tag: trd_0348
so part of: sequence
location: 351178..351519
location: region:351178-351519:1
so has part: feature:351178-351519:1:exon
subclass of: SO_0000010

position:351178:1
position: 351178
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:351519:1
position: 351519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:351178-351519:1:exon

TRD_RS01615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01615
old locus tag: trd_0348
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSDRPPLRARRVRRRGTVAVQLANWIPVLISVYWSILLARWFVWVLANAVGGQFTQLLVLHRWLAWPFTDLPGASRWPLLADIAAVVLSGVAALGLLGVAAGWWREAERRRPS
SIO_010081: TRD_RS01615
subclass of: SO_0000673
so part of: TRD_RS01615
location: 351178..351519
location: region:351178-351519:1
so has part: feature:351178-351519:1:exon

WP_012641755.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:351178-351519:1:exon

TRD_RS15200
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS15200
old locus tag: trd_0349
so part of: sequence
location: 351648..351770
location: region:351648-351770:1
so has part: feature:351648-351770:1:exon
subclass of: SO_0000010

position:351648:1
position: 351648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:351770:1
position: 351770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:351648-351770:1:exon

TRD_RS15200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS15200
old locus tag: trd_0349
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVRNLVRGVLNLVLAAVATWLANYLVERLFGPEEAVSEHS
SIO_010081: TRD_RS15200
subclass of: SO_0000673
so part of: TRD_RS15200
location: 351648..351770
location: region:351648-351770:1
so has part: feature:351648-351770:1:exon

WP_012641756.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:351648-351770:1:exon

TRD_RS01620
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01620
old locus tag: trd_0350
so part of: sequence
location: 351819..352988
location: region:351819-352988:1
so has part: feature:351819-352988:1:exon
subclass of: SO_0000010

position:351819:1
position: 351819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:352988:1
position: 352988
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:351819-352988:1:exon

TRD_RS01620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01620
old locus tag: trd_0350
inference: COORDINATES: protein motif:HMM:NF037429.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Vms1/Ankzf1 family peptidyl-tRNA hydrolase
translation: MEITRREVEGLGALRSDEWPIISLYLRVDKEHITDDHYSIRLKNLLKELERAREQIGLNRAQSQAVDEDVERIRAFFRDHGDEFGQGVALFASSRAGLWRVYHVPREVGNEADLDFRPVIGRLVRVVELFEPICTCVISRDRARIFRGHLVNFQEVAVRLDEEVPGQHGQGGWSQARFARHIEDHVRQHFQRVGQVLFQLFEQDPFRFLVVAGPDEVVADFVDGLHPYLRERYVGSFNCLMEATAKEIREETKRIVTAWQEQERQRYVDLVLEEALSQDMAVVGLDRVVEVVQMQNVNSLVVDDQLSAPGRYCLRCGALQPIGSEASECVFCGGLTRMRENIVPEVYAEAYRQNANLVFLSERDLRARLEPFGGIGAILRYRIGAPATS
SIO_010081: TRD_RS01620
subclass of: SO_0000673
so part of: TRD_RS01620
location: 351819..352988
location: region:351819-352988:1
so has part: feature:351819-352988:1:exon

WP_012641757.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:351819-352988:1:exon

TRD_RS01625
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01625
old locus tag: trd_0351
so part of: sequence
location: 352985..353893
location: region:352985-353893:1
so has part: feature:352985-353893:1:exon
subclass of: SO_0000010

position:352985:1
position: 352985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:353893:1
position: 353893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:352985-353893:1:exon

TRD_RS01625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01625
old locus tag: trd_0351
inference: COORDINATES: protein motif:HMM:NF039905.1
GO function: GO:0016301 - kinase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: diacylglycerol kinase family protein
translation: MKAFPTLALIVNSGAGRVRPSSVARVREELARRFRVTVHVGSSPDEVARLARQAAREAEVVVAFGGDGTASRVAAGVVGSDAVFSALPGGSTNHVARLLGFPADPVRAARLLAGPARFRFLDVGRVDAERILLFLGGTGIDGTIVRDAPPSAKRFFAWRTYLVPGLRHLLDGPWPFTVEVDGIQHVVRARSVLLANGSFLVHPYFRLGPAIDPSDGLLDVLILHPPHLVGWLELFAWTALGRLWRSRYVASYRGRRVVVRAATPVPAEIDGDSWIGITELAVTVEPRALRALVPAFVRGVGE
SIO_010081: TRD_RS01625
subclass of: SO_0000673
so part of: TRD_RS01625
location: 352985..353893
location: region:352985-353893:1
so has part: feature:352985-353893:1:exon

WP_012641758.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:352985-353893:1:exon

TRD_RS01630
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01630
old locus tag: trd_0352
so part of: sequence
location: complement(353916..354782)
location: region:353916-354782:-1
so has part: feature:353916-354782:-1:exon
subclass of: SO_0000010

position:353916:-1
position: 353916
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:354782:-1
position: 354782
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:353916-354782:-1:exon

TRD_RS01630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01630
old locus tag: trd_0352
inference: COORDINATES: protein motif:HMM:NF024855.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF4115 domain-containing protein
translation: MSEFGELLRNARAYRGVTLLDAERATRINRRYLAALEQEAFEQLPPLTYARGIVRLYAQYLGLDPVTVLAKFEEAHGQRSMGFRVVPSVQPVREPLMHWAPNFAVIVFMLALSAIVFALVYTTYLVPRETSPTPEASSVATSAEAVMPTVTGVVSAPAATATTVPTAPPGTVPVNPAANATASPASAASTEAKPEHSPTPGTSGTPAPAGPATTEHTFEIVTMGRVWVQVTVDGRTVLAEVLNEGDRRSFRGKTMTVSSGNAPLVRIIVDGQDRGPLGQRWDATASYP
SIO_010081: TRD_RS01630
subclass of: SO_0000673
so part of: TRD_RS01630
location: complement(353916..354782)
location: region:353916-354782:-1
so has part: feature:353916-354782:-1:exon

WP_012641759.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:353916-354782:-1:exon

TRD_RS01635
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01635
old locus tag: trd_0353
so part of: sequence
location: complement(354793..355554)
location: region:354793-355554:-1
so has part: feature:354793-355554:-1:exon
subclass of: SO_0000010

position:354793:-1
position: 354793
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:355554:-1
position: 355554
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:354793-355554:-1:exon

TRD_RS01635
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01635
old locus tag: trd_0353
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQRRCGTCRYFEEGGLAGSGWCRHPQRQGLQHVVFVRRGELACRTNWDQDLWEPREAGNRPALSVIAGSWVERADSPSPALHPEATPVSPPSVSAASAGPVHHQRTRPASQSYRTNGQSGETEPFPTVEEHAAPEPTEPSHLIEPQLDDVQPAAHASLAALPRICRTCRDFRPVGDGRHGWCANRYAFPERTLVAAETLGCHSTLGSWWLPTDDWWLQEVDISHHGQPTPLVDELLRQLLSMRQQERRRRASS
SIO_010081: TRD_RS01635
subclass of: SO_0000673
so part of: TRD_RS01635
location: complement(354793..355554)
location: region:354793-355554:-1
so has part: feature:354793-355554:-1:exon

WP_012641760.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:354793-355554:-1:exon

TRD_RS01640
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: miaB
locus tag: TRD_RS01640
old locus tag: trd_0354
so part of: sequence
location: 355758..357134
location: region:355758-357134:1
so has part: feature:355758-357134:1:exon
subclass of: SO_0000010

position:355758:1
position: 355758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:357134:1
position: 357134
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:355758-357134:1:exon

TRD_RS01640
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: miaB
locus tag: TRD_RS01640
old locus tag: trd_0354
EC number: 2.8.4.3
inference: COORDINATES: protein motif:HMM:TIGR01574.1
GO function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]; GO:0016782 - transferase activity, transferring sulphur-containing groups [Evidence IEA]
GO process: GO:0006400 - tRNA modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB
translation: MQLIQLQPAPASIVDAVPGVKRFHIWTIGCQMNEAESAKAAALLRQAGYVPAVREWDADIVIVNTCVVRQQAEDKALGYIGALARLKRRRPDVRIAVTGCLVTGQERRLAERFPWVDLWYGPSEFERLVSLVPELADVDIDLVELPHYYDEGQADPEVTAFVPVIYGCNFVCSYCIVPYRRGRERSRPVEQVVAEVEKLAARGVREVTLLGQTVNAYGHDLPGQPDLADLLERVHDVPGIERIRFLTSHPKYFSDKLIRAVADLPKVCEHVNLPVQSGDNEVLRRMRRHYTVEEYRERIARIRELIPDVTLSTDIIVGFPGETEEQFLNTYRLLEEIRFDKVHVAMYSPRPGTLSARWPDDVPREEKRRRHRAVEQLQERIARERNERYVGRTVEILVDGLARGRWRGRTRGNTLVFFEAPGDWRGRFVEVRVTQASPWYLLGEPVTVGAAEPAILTR
SIO_010081: TRD_RS01640
subclass of: SO_0000673
so part of: TRD_RS01640
location: 355758..357134
location: region:355758-357134:1
so has part: feature:355758-357134:1:exon

WP_012641761.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:355758-357134:1:exon

TRD_RS01645
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01645
old locus tag: trd_0355
so part of: sequence
location: 357159..358052
location: region:357159-358052:1
so has part: feature:357159-358052:1:exon
subclass of: SO_0000010

position:357159:1
position: 357159
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:358052:1
position: 358052
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:357159-358052:1:exon

TRD_RS01645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01645
old locus tag: trd_0355
inference: COORDINATES: protein motif:HMM:NF024824.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tetratricopeptide repeat protein
translation: MSMLTNQGSHERRLLRRLTQAAKQAAFQGNWERAVQLNQRITELSPRDVAAWNRLGHALAELGRVADARAAYQRVLEIEPGNAIAQRNVTRLEWLVSQTSDGTIPVPVRRPAPRADVFMEEMGRTYVTDLLRPAAPAVLAQLFPGQEVFLDIRDDAVIVLDADGTRLGQLEGRLARRVARLTREGNQYRAFVIQLTGDTLRVILREVFRTPHLLDTPSFPPQPKIAPPRPYLPEAFGRGEEIIEEEEFFPEEEEAEALEVEEEELVESEEEITEEPLSAVDEEALVVEFDIDETISE
SIO_010081: TRD_RS01645
subclass of: SO_0000673
so part of: TRD_RS01645
location: 357159..358052
location: region:357159-358052:1
so has part: feature:357159-358052:1:exon

WP_012641762.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:357159-358052:1:exon

TRD_RS01650
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01650
old locus tag: trd_0356
so part of: sequence
location: complement(358117..358383)
location: region:358117-358383:-1
so has part: feature:358117-358383:-1:exon
subclass of: SO_0000010

position:358117:-1
position: 358117
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:358383:-1
position: 358383
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:358117-358383:-1:exon

TRD_RS01650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01650
old locus tag: trd_0356
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGRVNTTKARRKTSKRTARASAPVPAGSVSPSPDKPSGSRSATQPQGIISPWGRVDEEYALIKADLTRLLWVTALLLGLLLLLAIVLR
SIO_010081: TRD_RS01650
subclass of: SO_0000673
so part of: TRD_RS01650
location: complement(358117..358383)
location: region:358117-358383:-1
so has part: feature:358117-358383:-1:exon

WP_012641763.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:358117-358383:-1:exon

TRD_RS01655
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01655
old locus tag: trd_0357
so part of: sequence
location: complement(358425..359237)
location: region:358425-359237:-1
so has part: feature:358425-359237:-1:exon
subclass of: SO_0000010

position:358425:-1
position: 358425
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:359237:-1
position: 359237
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:358425-359237:-1:exon

TRD_RS01655
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01655
old locus tag: trd_0357
inference: COORDINATES: protein motif:HMM:NF014003.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SAM-dependent chlorinase/fluorinase
translation: MLTTWRPSGIVTFTSDYGVRDSYVAQVKGVILERAPTSTIIDVTHEIAAQDILEGAFQLATAWRAFPVGTIHLAVVDPGVGSERRAVSILADGHAFVLPDNGLATFVLAEAHQVAAWSLDRSEWFRQPVAPTFHGRDIFGPICGLLASGMSLAEVGTPLDPASLVKLPIQPVIASGGSVVGPIVSIDRFGNCRTLIRREQLPDESETLCIRCGQLELLGIVRTFADVAPGMPLAYFGSHGGLEIAVRDGNAAATWHLERGMLVEVRRAVK
SIO_010081: TRD_RS01655
subclass of: SO_0000673
so part of: TRD_RS01655
location: complement(358425..359237)
location: region:358425-359237:-1
so has part: feature:358425-359237:-1:exon

WP_012641764.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:358425-359237:-1:exon

TRD_RS01660
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: ggt
locus tag: TRD_RS01660
old locus tag: trd_0358
so part of: sequence
location: complement(359250..360881)
location: region:359250-360881:-1
so has part: feature:359250-360881:-1:exon
subclass of: SO_0000010

position:359250:-1
position: 359250
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:360881:-1
position: 360881
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:359250-360881:-1:exon

TRD_RS01660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: ggt
locus tag: TRD_RS01660
old locus tag: trd_0358
EC number: 2.3.2.2
inference: COORDINATES: protein motif:HMM:TIGR00066.1
GO process: GO:0006750 - glutathione biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: gamma-glutamyltransferase
translation: MTARAIATFAERAGRPLLMGRCWAVSSGHSLASWAGARVLERGGSAADAAVAVAAALNVVEPQMSGIGGDLFALVYEAGTSTVWAVNGTGPAPLDATPERFRDGIPERGPLAASVPAAARAWDLLVQRWGRLPLSITLAPAIELARDGFPVSHNLATYIETYADVLASYPETARTFLPTGSPPCPGDVLRQPDLARTLETVAAEGVNALYEGDLAERLTRAVLAAGGLLTRESLRLARATIVEPLQLAYRDWTICVPPPNSSAHTLLEMLGILQYFPLARWRPLSPELLHVMIEAKKLAFLDRERFTGDPDFVGPFPPDVLAPERLQRLAAAIDLTRAKPVLTTRPAREDHTTSFSVMDHEGNLVVVTASLNMAFGSAFIAGDTGILLNNRMTYWHLEPKHPNQLQPGKRVRHTLSPVLLTRPGERLGLGTPGSDAQVQILVHVLVHWLEYGFDLQTAIELPRWRHRGPGHESNWPHGSLDLVQVEGRLPNATIEGLQARGHRVERLARWGPIGSCQGIHWRDAERVVEAAADPRSDAYALAW
SIO_010081: TRD_RS01660
subclass of: SO_0000673
so part of: TRD_RS01660
location: complement(359250..360881)
location: region:359250-360881:-1
so has part: feature:359250-360881:-1:exon

WP_012641765.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:359250-360881:-1:exon

TRD_RS01665
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01665
old locus tag: trd_0359
so part of: sequence
location: complement(360878..361528)
location: region:360878-361528:-1
so has part: feature:360878-361528:-1:exon
subclass of: SO_0000010

position:360878:-1
position: 360878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:361528:-1
position: 361528
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:360878-361528:-1:exon

TRD_RS01665
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01665
old locus tag: trd_0359
inference: COORDINATES: protein motif:HMM:NF024214.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: molybdenum cofactor guanylyltransferase
translation: MEASIAVLAGGQSRRMGQDKALLDFCGEPLLARVLRRVRHLTDDLFVVASDRPAYAQFGVPIVPDRLPGSGPLGGIYSALLAARHEYCLVLSCDLPFVSPDLLAALLAVPRDYDVLVPTRAERTGQGGMLTYETLHAVYSKRCLRAIERQLAAGNLKIVSFFAEVRVVPVPESHLRTIDPELLSFANTNTPEAYRAALERAKGTEQCLESPVEGSA
SIO_010081: TRD_RS01665
subclass of: SO_0000673
so part of: TRD_RS01665
location: complement(360878..361528)
location: region:360878-361528:-1
so has part: feature:360878-361528:-1:exon

WP_012641766.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:360878-361528:-1:exon

TRD_RS01670
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01670
old locus tag: trd_0360
so part of: sequence
location: 361938..362201
location: region:361938-362201:1
so has part: feature:361938-362201:1:exon
subclass of: SO_0000010

position:361938:1
position: 361938
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:362201:1
position: 362201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:361938-362201:1:exon

TRD_RS01670
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01670
old locus tag: trd_0360
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNSSLIGKIEKARRYAAEPERVQVQSLHVRFRGEHDVYDVHFADGSWSCTCHSFEALGLGTCSHIMALERLLGPIAPQAVGQAERVS
SIO_010081: TRD_RS01670
subclass of: SO_0000673
so part of: TRD_RS01670
location: 361938..362201
location: region:361938-362201:1
so has part: feature:361938-362201:1:exon

WP_041436273.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:361938-362201:1:exon

TRD_RS01675
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01675
old locus tag: trd_0361
so part of: sequence
location: 362492..363154
location: region:362492-363154:1
so has part: feature:362492-363154:1:exon
subclass of: SO_0000010

position:362492:1
position: 362492
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:363154:1
position: 363154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:362492-363154:1:exon

TRD_RS01675
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01675
old locus tag: trd_0361
inference: COORDINATES: protein motif:HMM:NF024874.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MBL fold metallo-hydrolase
translation: MTFDVTWYAQSAFRIDVAGLRLYHDPFQIPDGEPTADVILISHEHFDHCSPPDIARIRDVHKTFVVANPTAANTRELEPPVHVIRPGGEVQYGRLSIRAVPAYNLNKFRSPGVPFHPREKEHVGFICRAEGVTWYFAGDTDAIPEMAQFGPVDYAFLPVSGTYVMTAEEAAEAVRMLQPRVVIPMHYGTVVGSVEDARRLAALVGDVAEVRILEPRGRPS
SIO_010081: TRD_RS01675
subclass of: SO_0000673
so part of: TRD_RS01675
location: 362492..363154
location: region:362492-363154:1
so has part: feature:362492-363154:1:exon

WP_012641768.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:362492-363154:1:exon

TRD_RS14800
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS14800
old locus tag: trd_0362
so part of: sequence
location: complement(363159..363821)
location: region:363159-363821:-1
so has part: feature:363159-363821:-1:exon
subclass of: SO_0000010

position:363159:-1
position: 363159
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:363821:-1
position: 363821
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:363159-363821:-1:exon

TRD_RS14800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS14800
old locus tag: trd_0362
inference: COORDINATES: protein motif:HMM:NF013672.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: polysaccharide deacetylase family protein
translation: MYHYIRPRPGPDDPIGRALSVEPAEFAAQIHWLSTHGYTPITLSELEAIRRGDQPAPAKPIVLTFDDGYRDFYEHAWPILRQYNFHATIFVITGLLDSPRYLTWEMVRELDRSGAIEIGAHTVHHVDLTQVSDAQLRAELTECATALREALGHPVLSFAYPAGKIDQRVKAATAAAGYRMAVTTQPGRAGADDDPLALPRLRVSGEMTLEQFAALLTVSS
SIO_010081: TRD_RS14800
subclass of: SO_0000673
so part of: TRD_RS14800
location: complement(363159..363821)
location: region:363159-363821:-1
so has part: feature:363159-363821:-1:exon

WP_169302276.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:363159-363821:-1:exon

TRD_RS01685
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01685
old locus tag: trd_0363
so part of: sequence
location: 364325..365935
location: region:364325-365935:1
so has part: feature:364325-365935:1:exon
subclass of: SO_0000010

position:364325:1
position: 364325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:365935:1
position: 365935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:364325-365935:1:exon

TRD_RS01685
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01685
old locus tag: trd_0363
inference: COORDINATES: protein motif:HMM:NF005712.0
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: thiamine pyrophosphate-binding protein
translation: MRVTGGEAVVRTLERLGVEVVFGIPGVHTLAIYDALYSSPIRHVLARHEQGAGFMADGYARVSGKPGVAIVITGPGVTNIATAIGEAYADSSPVVVIASNVEQAWQGQMLGHLHDCKDQLGIMRVVTKWADRARSVEDVPRLLRTAFAEAISGRRRPTHLEVPLDVLHGSGDIELAHLAPLSMERSQPRRSAIELAARMIEEAERVVLYCGGGVVASGATAELSALAERLGAAVITSLQGKGAIPEDHPRCLGNLWEPENAVERVLRESDLVIVIGSKLGAQDTANGRLPLPDRRIRIDIDAQEILRNYPPTLPIVADARETVRALLSELTSRGITKQGWPVDVLQATKREALATAWGAGQAEWLRAIRAVLPRDGILVSDMTMMAYVGNRHYPVYEPGTYLFPTGYGTLGFALPAAIGAKIARPEAAVVALVGDGGYQFTMQELATAVQFRIGIPIILFNDASYTAVKDEQARSFGGRFIAVDLVNPDFQKLAAAYGIPSEYVTSPQTLEGAIARALERDLPTLIEVPIDFPLGA
SIO_010081: TRD_RS01685
subclass of: SO_0000673
so part of: TRD_RS01685
location: 364325..365935
location: region:364325-365935:1
so has part: feature:364325-365935:1:exon

WP_012641770.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:364325-365935:1:exon

TRD_RS01690
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: cimA
locus tag: TRD_RS01690
old locus tag: trd_0365
so part of: sequence
location: 366254..367873
location: region:366254-367873:1
so has part: feature:366254-367873:1:exon
subclass of: SO_0000010

position:366254:1
position: 366254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:367873:1
position: 367873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:366254-367873:1:exon

TRD_RS01690
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: cimA
locus tag: TRD_RS01690
old locus tag: trd_0365
EC number: 2.3.3.21
inference: COORDINATES: protein motif:HMM:TIGR00977.1
GO function: GO:0043714 - (R)-citramalate synthase activity [Evidence IEA]
GO process: GO:0009097 - isoleucine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: citramalate synthase
translation: MSENGERRVVIYDTTLRDGTQGSGVSLTTEDKLKIARALDELGVAYIEGGWPGSNPKDMAFFERARHQQWRHARITAFGSTRRAGGTVEEDVNLRLLLEAETPAVTIVGKASPFQVRVILGTTLDENLRMVAESVAFLKAAGREVIFDAEHFFDGYAEDPDYALAVLRAACDAGADAVVLCDTNGGTLTDPLVRAVRHALSSVSCTVGIHTHNDCELAVANTIAAVLAGAMHVQGTMNGLGERIGNANLCSIIPILEYKLGYRCLPPGNLRKLTETSRYVAEVANLAHDPRLPFVGAFAFTHKAGLHVNAIAKHPSAYEHIPPEVVGNTRHVLVSELSGRSNIVVKARSFGIELGDKPEVVRRVLEQIKELEFHGYWFEDADASLELLIRRNLPDYRPPFEVLDYTVLTEYRNGRGMLAEAMVKLRIGQHVFHTAAEGNGPVNALDRATRKALQEFYPEIAAVDLEDYKVRVLDDHHGTGAKVRVWIRSGDAHGSWNTVGSSENIIEASWLALADSLAYPLVTRPELAARIPELVSAVS
SIO_010081: TRD_RS01690
subclass of: SO_0000673
so part of: TRD_RS01690
location: 366254..367873
location: region:366254-367873:1
so has part: feature:366254-367873:1:exon

WP_143714592.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:366254-367873:1:exon

TRD_RS01695
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: asd
locus tag: TRD_RS01695
old locus tag: trd_0366
so part of: sequence
location: complement(367919..368971)
location: region:367919-368971:-1
so has part: feature:367919-368971:-1:exon
subclass of: SO_0000010

position:367919:-1
position: 367919
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:368971:-1
position: 368971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:367919-368971:-1:exon

TRD_RS01695
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: asd
locus tag: TRD_RS01695
old locus tag: trd_0366
EC number: 1.2.1.11
inference: COORDINATES: protein motif:HMM:NF006416.0
GO function: GO:0004073 - aspartate-semialdehyde dehydrogenase activity [Evidence IEA]
GO process: GO:0009089 - lysine biosynthetic process via diaminopimelate [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: aspartate-semialdehyde dehydrogenase
translation: MSDRIDVAILAATGSVGQRFVQLLAGHPWFRIAELVASDRSAGKRYAEAVNWRISAAPPEEVRDLVVKHIEEPINSPIVFSALPGGVAGPIEEALAAEGKKVFTNARDHRMDPDVPLLIPEVNPDHARAIERQRQLRGWREGFIVANPNCSTIHLVLALKPIHDAFGIERGIVTTLQASSGAGYPGVPSLDLIDNVIPYIGGEEEKIEAESRKILGRWIDGTFEDAPIVLSAHCNRVPVRDGHLETVSLDLHRSATPAEVIDVLRAFRALPQELELPSAPRHPVIVLEEPDRPQPVLDRDAERGMASVVGRVRPCSVFDIRFVVLGHNTIRGAAGASVLNAELFYREGLL
SIO_010081: TRD_RS01695
subclass of: SO_0000673
so part of: TRD_RS01695
location: complement(367919..368971)
location: region:367919-368971:-1
so has part: feature:367919-368971:-1:exon

WP_012641773.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:367919-368971:-1:exon

TRD_RS01700
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01700
old locus tag: trd_0367
so part of: sequence
location: 369259..370257
location: region:369259-370257:1
so has part: feature:369259-370257:1:exon
subclass of: SO_0000010

position:369259:1
position: 369259
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:370257:1
position: 370257
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:369259-370257:1:exon

TRD_RS01700
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01700
old locus tag: trd_0367
EC number: 1.1.1.3
inference: COORDINATES: protein motif:HMM:NF004976.0
GO function: GO:0004412 - homoserine dehydrogenase activity [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
GO process: GO:0006520 - amino acid metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: homoserine dehydrogenase
translation: METVGIALLGVGTIGSAVLRMIREERERIAERTGLFLDVRWGLARHRERVVQAGLSERAATTSIEPILADPSVQVVVEVLGGEEPAAAYMKRALEAGKHVVTANKEALSKHFAELVAAAREHQRALLFEASVGAGIPLMVSLRQLLTTNRLHRIRGIVNGTTNFILTLMAEEGVPYQEALRQAQELGYAEPDPTADVEGYDAAYKLSILASLAAGRHIRPEVVERRGITTVTPDQILDARTRGGAMKLLAEAELADETWRLRVRPVFVPASDLLAHVRLNLNAIELTGDRVGTIVLYGPGAGPSPTASAVIADVLDAVRFGPALLPNLEPAT
SIO_010081: TRD_RS01700
subclass of: SO_0000673
so part of: TRD_RS01700
location: 369259..370257
location: region:369259-370257:1
so has part: feature:369259-370257:1:exon

WP_012641774.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:369259-370257:1:exon

TRD_RS01705
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01705
old locus tag: trd_0368
so part of: sequence
location: complement(370374..371486)
location: region:370374-371486:-1
so has part: feature:370374-371486:-1:exon
subclass of: SO_0000010

position:370374:-1
position: 370374
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:371486:-1
position: 371486
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:370374-371486:-1:exon

TRD_RS01705
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01705
old locus tag: trd_0368
EC number: 2.3.1.31
inference: COORDINATES: protein motif:HMM:NF001209.0
GO function: GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
GO process: GO:0009058 - biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: homoserine O-acetyltransferase
translation: MTSTLPVTYQIARIATPEQPFVTEHGDVLPVVDIAYETWGTLSPTGDNVVLICHALTGSSHVAPHGPGDQPGWWDPMVGPGRFIDTDRYFVICANVLGSCYGSTGPRSIDPRTSRRYNLRFPLITVRDIVRSQAMLLDQLGIERVYAVIGGSLGGMQVLEWAAMYSDRVERIVPIAAGASFSDQGIAYNEVQRRVIMLDPAWQNGEYEDGEGPRYGLAIARMLGMITYQSDELMSARFQRRTGARYTEWPEFLGRYDVEGYLHYQGDKLVRRFDANSYLYLTRAMDSHDLGRGRGGYHAGLSRIRARTLAIGIRSDILFWPNQVRSLAEDLRALGVDARYWELDSPNGHDAFLKDFDQIGPVIAAFLAEP
SIO_010081: TRD_RS01705
subclass of: SO_0000673
so part of: TRD_RS01705
location: complement(370374..371486)
location: region:370374-371486:-1
so has part: feature:370374-371486:-1:exon

WP_041435911.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:370374-371486:-1:exon

regulatory
type: Feature
subclass of: SO_0000001
RO_0002162: 309801
regulatory class: riboswitch
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF00162
inference: COORDINATES: profile:INFERNAL:1.1.4
note: SAM riboswitch class I; Derived by automated computational analysis using gene prediction method: cmsearch.
bound moiety: S-adenosylmethionine
so part of: sequence
location: complement(371625..371734)
location: region:371625-371734:-1
so has part: feature:371625-371734:-1:region

position:371625:-1
position: 371625
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:371734:-1
position: 371734
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:371625-371734:-1:region

TRD_RS01710
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01710
old locus tag: trd_0369
so part of: sequence
location: complement(371849..372949)
location: region:371849-372949:-1
so has part: feature:371849-372949:-1:exon
subclass of: SO_0000010

position:371849:-1
position: 371849
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:372949:-1
position: 372949
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:371849-372949:-1:exon

TRD_RS01710
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01710
old locus tag: trd_0369
inference: COORDINATES: protein motif:HMM:NF018805.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: lipocalin family protein
translation: MRRRAFLGTLALGLLACRSSNGPQSQEPMGPTPSASPRPASLFLTPPPAPGPVVFPRDFGSHDVLTEWWYDTGHLRSAAGERFGFEFVIFQVQRFGYPVVYAAHAALTLVDRQAFLWDERLIAVPQRQESWPLALAVGDWTLTSDGESDRITVRSGSFGFTLELQNLRPPLLHDEDGYFSWAPETGSYYYSRTRLATRGVVSVGGHDVSVSGVAWNDHQWGNFLLGGGGWDWFAIQLEDGTDLMLWQSRDAAQRVIQRSGTLLRADGSIRWLHDAEIGLHATGSWQSPHSGAIYPSGWQIELPPDMTLTVTPLVLDQELQTVRSTGVIYWEGAVSVIAAQAGVKTIGQGYVELTGYATPSVPVTPP
SIO_010081: TRD_RS01710
subclass of: SO_0000673
so part of: TRD_RS01710
location: complement(371849..372949)
location: region:371849-372949:-1
so has part: feature:371849-372949:-1:exon

WP_012641776.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:371849-372949:-1:exon

TRD_RS01715
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01715
old locus tag: trd_0370
so part of: sequence
location: complement(372950..375160)
location: region:372950-375160:-1
so has part: feature:372950-375160:-1:exon
subclass of: SO_0000010

position:372950:-1
position: 372950
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:375160:-1
position: 375160
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:372950-375160:-1:exon

TRD_RS01715
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01715
old locus tag: trd_0370
inference: COORDINATES: protein motif:HMM:NF015155.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MMPL family transporter
translation: MVFERIGRFSFRYRWFVLALWLVVVLAVLPTLPRATGRLEVGGFSSPHTEAARTRELLRERIPGYSPSSLLVLFSHPTLSPSDPAFVEQAQRALSAVPSIPHVTGIRWFTENPSQIAPDGSLAYAVIELDLQPEEAQRVLDEIQEAIIRTDLQVQLAGAPAFYADLERVTERDLRRAELIAFPFALAALLFVFGSAVAAAVPLFIGGVTVALVLGIVYGLTHLTELSIFTLNVASLLGLGLSIDYSLFLVSRFREELASHDLADAVARTTATAGRAVFFSGLTVLIGLSGLGFFEFLFMRSVGIAGMLVVLVAVSASLTLLPAVLGILGRRIDALRVIRRDTETGRFWHWITEFVMQRPWQVALPVVALLVLLGLPFRHVELSSPDATILPTSTPSRQALETFRRAFGDGELSPIVIAVETERPVNDPQTLAALYDFTRRLAADPRVTKVTSIVTIDPRISLAQYQLLYADPERIPEPLLQRVYRELAGDHLTAIYVYTDALPASDRAKALLHDIRAMDPGPGLKLWVDGGTAEIVDVVDRMYSEFPLAASTVILATYIVLFLLLRSVFLPLKAIILNVLSLTASYGALVFVFQEGHFSSLLRFSPLGFTEASLPIVMFCILFGVSMDYEVFLLSRMRESWDQTQDNRLAVATGLARSGRIITGAALILVVVAAAFVTADVVLIKALGLGIALAIALDASIVRTLLVPATMRLLGQWNWWVPRRLARTLDTVRIGH
SIO_010081: TRD_RS01715
subclass of: SO_0000673
so part of: TRD_RS01715
location: complement(372950..375160)
location: region:372950-375160:-1
so has part: feature:372950-375160:-1:exon

WP_012641777.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:372950-375160:-1:exon

TRD_RS01720
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01720
old locus tag: trd_0371
so part of: sequence
location: complement(375234..376826)
location: region:375234-376826:-1
so has part: feature:375234-376826:-1:exon
subclass of: SO_0000010

position:375234:-1
position: 375234
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:376826:-1
position: 376826
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:375234-376826:-1:exon

TRD_RS01720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01720
old locus tag: trd_0371
inference: COORDINATES: protein motif:HMM:NF013173.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: trehalose-6-phosphate synthase
translation: MAHQRAGQHRDGQLDVQLPDYARELLERSTLIIVSNRGPVEFHQTNDGEIATKRGTGGVITAMSAAARFADAIWVACAMTPTDRVIAEEMRQRREALLTIPDLPGFRLRFVVPDTEAYRGYYNRIANPLLWFLQHYLWDTPRAPDIDHETWQAWHEGYVAVNRLFAEEVVAAAAAAPRDPIVLLQDYHLYLAPTFIRELRPDLLLHHFVHIPWPDQDYWRLLPLPMRRAICEGLLANDIVGFQTPRHARSFLNTVDANLPEAEVDYRRREVTYRGHTTRVRVYPISIDPELVRAVAESEDARRHREHLEAFRNEYTIIRVDRAEPSKNVVRGFLAYDRLLEKHPELIGRVNFLAFLVPTRMEVAEYINYLDEINAVVGRINAKYANAAEIEGIHWEPVHLFVGDDYPRALAAMKFYDVLLVNAIFDGMNLVAKEGALLNERNGVLILSEGAGAYQQLGQWALTVSPTDIEGTAEALWQGLIMPAAERAWRAEQLRRHVVEHDLRRWLVDQLHDIADLRAERAPHRLIAPS
SIO_010081: TRD_RS01720
subclass of: SO_0000673
so part of: TRD_RS01720
location: complement(375234..376826)
location: region:375234-376826:-1
so has part: feature:375234-376826:-1:exon

WP_012641778.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:375234-376826:-1:exon

TRD_RS01725
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01725
old locus tag: trd_0373
so part of: sequence
location: complement(377108..377533)
location: region:377108-377533:-1
so has part: feature:377108-377533:-1:exon
subclass of: SO_0000010

position:377108:-1
position: 377108
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:377533:-1
position: 377533
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:377108-377533:-1:exon

TRD_RS01725
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01725
old locus tag: trd_0373
inference: COORDINATES: protein motif:HMM:NF012355.2
GO function: GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plastocyanin/azurin family copper-binding protein
translation: MRRDATERLTRRGFMRRAGAVAIAVPAVSALLAACGGGGGGGGTSGGGGGKLTIEMGEYYYKPATITVSPGASVTVTLKNAGTLQHDFHCDQINPTTSSLVDPGKSLDFTFTAPSQAGTYDFWCTVPGHKELGMVGKLEVK
SIO_010081: TRD_RS01725
subclass of: SO_0000673
so part of: TRD_RS01725
location: complement(377108..377533)
location: region:377108-377533:-1
so has part: feature:377108-377533:-1:exon

WP_226980707.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:377108-377533:-1:exon

TRD_RS14075
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS14075
old locus tag: trd_0374
so part of: sequence
location: complement(377712..378662)
location: region:377712-378662:-1
so has part: feature:377712-378662:-1:exon
subclass of: SO_0000010

position:377712:-1
position: 377712
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:378662:-1
position: 378662
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:377712-378662:-1:exon

TRD_RS14075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS14075
old locus tag: trd_0374
inference: COORDINATES: protein motif:HMM:NF013672.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: polysaccharide deacetylase family protein
translation: MIGRHPLLGLSGILISWLVVGLACRGPAIYPTVTEPTGTATPSPTESAPTAATTPIASPVPLPRPTPFPTPNPTPPPPTPPIEPTPLTTPTSPSLSSPTPTSLPVQSVARVITRLETTQAVIALTFDCGADRGYAEEILDELARHGIRATFGMTGAWARANPDLVARMLREGHRLINHSDTHPSFTGRSTGSPPLSVDQRAAEIRRAEQAVAAVSGSETTMRPYFRPPYGDYDEALLTLLPELGYSVVVMWTVDSLGWRGIPPEEVVTRVLAAAQPGAIVLLHVGAQSTDAAALPQLIAALQERGYGFVTTDAQLG
SIO_010081: TRD_RS14075
subclass of: SO_0000673
so part of: TRD_RS14075
location: complement(377712..378662)
location: region:377712-378662:-1
so has part: feature:377712-378662:-1:exon

WP_081433377.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:377712-378662:-1:exon

TRD_RS01740
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01740
old locus tag: trd_0376
so part of: sequence
location: complement(378659..378979)
location: region:378659-378979:-1
so has part: feature:378659-378979:-1:exon
subclass of: SO_0000010

position:378659:-1
position: 378659
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:378979:-1
position: 378979
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:378659-378979:-1:exon

TRD_RS01740
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01740
old locus tag: trd_0376
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002942999.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: metal-sulfur cluster assembly factor
translation: MAKFTEDDVRERLKQVIDPELGVDVVNLGLIYGIDLIDREDGKTDVLITMTLTTFGCPLGPILTEEVNYALRDLPDLGNVEVNLVWSPPWTPDMMSEEAKDALGIW
SIO_010081: TRD_RS01740
subclass of: SO_0000673
so part of: TRD_RS01740
location: complement(378659..378979)
location: region:378659-378979:-1
so has part: feature:378659-378979:-1:exon

WP_041436282.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:378659-378979:-1:exon

TRD_RS01745
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01745
old locus tag: trd_0377
so part of: sequence
location: complement(379069..379449)
location: region:379069-379449:-1
so has part: feature:379069-379449:-1:exon
subclass of: SO_0000010

position:379069:-1
position: 379069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:379449:-1
position: 379449
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:379069-379449:-1:exon

TRD_RS01745
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01745
old locus tag: trd_0377
inference: COORDINATES: protein motif:HMM:NF013738.2
GO function: GO:0005198 - structural molecule activity [Evidence IEA]
GO process: GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SUF system NifU family Fe-S cluster assembly protein
translation: MAELYREHILDHYQHPRNYGTLERPDRTFEDSNPLCGDRIRIDLKLENDRIADIRFTGRGCAISQAAASILTEMVKGKTLEEVKQLGAQDLLEELGVPISPARRKCALLSLKVLKAAAYGLNEWPT
SIO_010081: TRD_RS01745
subclass of: SO_0000673
so part of: TRD_RS01745
location: complement(379069..379449)
location: region:379069-379449:-1
so has part: feature:379069-379449:-1:exon

WP_012641784.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:379069-379449:-1:exon

TRD_RS01750
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01750
old locus tag: trd_0378
so part of: sequence
location: complement(379472..380731)
location: region:379472-380731:-1
so has part: feature:379472-380731:-1:exon
subclass of: SO_0000010

position:379472:-1
position: 379472
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:380731:-1
position: 380731
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:379472-380731:-1:exon

TRD_RS01750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01750
old locus tag: trd_0378
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004808737.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cysteine desulfurase
translation: MTSFTGTQPLDVERIRGDFPIFQRTVRGGRPLVYLDSAATSQKPASVIEALAGFYRTSNANIHRGIYELSEEASVLYEEARAKVARFIGASRAQEVVFVRNTTEAINLVARTWGTTALQPGDVVVTTILEHHSNIVPWHQLAVERGIIVRFVDIDEHGRLRLDQLEELLDAYPVKLVAVTHVSNALGTINPIPEIVRLAHRTGALVLVDGAQSVPHLPVNVRELGADFLAFSGHKMLAPFGIGVLWARYDLLTSLPPFLGGGGMIRTVTTDGFSPGDVPARFEAGTPSVADAVALGAAIDYLESIGMAAIRQHERALLAYALPRLEEIPGIRLYGPVGDDRSGVISFTIGDVHPHDVAAVLDQHGIAVRAGHHCTQPLMRRLGVVATTRASFYLYNAEDDVDRLIEALREVRRVFGVAG
SIO_010081: TRD_RS01750
subclass of: SO_0000673
so part of: TRD_RS01750
location: complement(379472..380731)
location: region:379472-380731:-1
so has part: feature:379472-380731:-1:exon

WP_012641785.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:379472-380731:-1:exon

TRD_RS01755
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: sufD
locus tag: TRD_RS01755
old locus tag: trd_0379
so part of: sequence
location: complement(380728..382065)
location: region:380728-382065:-1
so has part: feature:380728-382065:-1:exon
subclass of: SO_0000010

position:380728:-1
position: 380728
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:382065:-1
position: 382065
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:380728-382065:-1:exon

TRD_RS01755
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: sufD
locus tag: TRD_RS01755
old locus tag: trd_0379
inference: COORDINATES: protein motif:HMM:TIGR01981.1
GO function: GO:0005198 - structural molecule activity [Evidence IEA]
GO process: GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Fe-S cluster assembly protein SufD
translation: MSTRVAERTRGFTREAVEELSHLLDEPAWLRERRLAAWEIYERTPMPSRTDEEWRRTDIRRLPIDQVVPFAGVGQRVSGPDVLPSALFEILGDAALRSGLLVQVDSSVVFTQLDPQLAAEGVVFTDLLTAARDMPELLQRVFMTEAVKPEDNKFAALHGAFWSGGTFLYVPEGVEVALPLRSFVWAETPGSAIFAHTLLVAEPGASVVLIDTWASPTVEEPLIASNVVEIITGEGAQVRYIQLQDWGRSVWNFTTQRALLRQDVTVNTLNVSLGSRLSKAFIASNLVGPGATAEMLGLYFADDAQHLDHQTRQWHVAPYASSDLLYKGALKDRARTVFSGLIKVFPQAQRTDAYQANRNLILSPTARADTIPNLEIGANDVRCTHGATVGQVEEEYIFYLMSRGISRPEAVKLIVDGFFDEVIERVPVTEVQETVRAAIARKIGL
SIO_010081: TRD_RS01755
subclass of: SO_0000673
so part of: TRD_RS01755
location: complement(380728..382065)
location: region:380728-382065:-1
so has part: feature:380728-382065:-1:exon

WP_012641786.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:380728-382065:-1:exon

TRD_RS01760
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: sufB
locus tag: TRD_RS01760
old locus tag: trd_0380
so part of: sequence
location: complement(382121..383536)
location: region:382121-383536:-1
so has part: feature:382121-383536:-1:exon
subclass of: SO_0000010

position:382121:-1
position: 382121
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:383536:-1
position: 383536
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:382121-383536:-1:exon

TRD_RS01760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: sufB
locus tag: TRD_RS01760
old locus tag: trd_0380
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016623216.1
GO function: GO:0005198 - structural molecule activity [Evidence IEA]
GO process: GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Fe-S cluster assembly protein SufB
translation: MTTPEVELKRLGSEYAEKYGFRDPEQYVFKARKGLDREVVEQISWIKNEPEWMREFRLKALEYFLRRPMPTWGADLSELNFDEIVYYIKPTERQGTSWEELPEHIRRTFDRLGIPEAERRFLAGVGAQYESEVVYHSLREELKRLGVIFCDMDTAVREYPDLVKQYFGTIVPPNDNKFAALNSAVWSGGSFVYVPEGVRVDVPLQAYFRINAENVGQFERTLIIVEPGAYVHYVEGCTAPIYSAASLHSAVVEIIVKEGARCRYTTIQNWSKNVYNLVTKRAAAYRDATMEWVDGNLGSKVTMKYPAVWLMEPGARGEVLSVAFAGDGQHQDAGGKMVHVAPYTSSQIISKSISKGTGRASYRGLVKVHRGAHHVRANVVCDALLLDEQSRTDTYPYMEIEEEQVSIGHEATVSKVAEEQLFYLQSRGLTEAEAMSMIVNGFIEPITKELPLEYAVELNRLIALEMEGSVG
SIO_010081: TRD_RS01760
subclass of: SO_0000673
so part of: TRD_RS01760
location: complement(382121..383536)
location: region:382121-383536:-1
so has part: feature:382121-383536:-1:exon

WP_012641787.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:382121-383536:-1:exon

TRD_RS01765
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: sufC
locus tag: TRD_RS01765
old locus tag: trd_0381
so part of: sequence
location: complement(383566..384351)
location: region:383566-384351:-1
so has part: feature:383566-384351:-1:exon
subclass of: SO_0000010

position:383566:-1
position: 383566
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:384351:-1
position: 384351
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:383566-384351:-1:exon

TRD_RS01765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: sufC
locus tag: TRD_RS01765
old locus tag: trd_0381
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002503432.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
GO process: GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Fe-S cluster assembly ATPase SufC
translation: MTEHTPLFVIENLRAGIEGKEILRGVNLVIERGEIHALMGPNGSGKSTLAYVIAGHPNYEVYEGRILYKGENVLELPPDERARMGMFLAFQYPTAIPGVTMANFLRLAVNSVRKARLGEDKALSPREFRRLLREKLEMLRMDESFASRYLNEGFSGGEKKRAEILQMAMLEPEFAVLDETDSGLDIDALRTVSEGVNRLFNPNMALLVITHYQRILNYIRPHYVHVMLDGKIAVSGGPELAEELEEKGYDWVKEQFAEAAS
SIO_010081: TRD_RS01765
subclass of: SO_0000673
so part of: TRD_RS01765
location: complement(383566..384351)
location: region:383566-384351:-1
so has part: feature:383566-384351:-1:exon

WP_041436285.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:383566-384351:-1:exon

TRD_RS01770
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01770
old locus tag: trd_0382
so part of: sequence
location: complement(384466..384876)
location: region:384466-384876:-1
so has part: feature:384466-384876:-1:exon
subclass of: SO_0000010

position:384466:-1
position: 384466
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:384876:-1
position: 384876
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:384466-384876:-1:exon

TRD_RS01770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01770
old locus tag: trd_0382
inference: COORDINATES: protein motif:HMM:NF013629.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transcriptional repressor
translation: MTPQRMAILAEVQNAERHLTAAEIYERVRRKYPTIAYGTVYRTLHLLAKHGLIQEFPFGDNASRFDRRTDRHDHVHCVVCGELVDVEVPTALLARQVAAEKTGFEILDHQTVFAGICPSCQEKRDRTVQEARAGRR
SIO_010081: TRD_RS01770
subclass of: SO_0000673
so part of: TRD_RS01770
location: complement(384466..384876)
location: region:384466-384876:-1
so has part: feature:384466-384876:-1:exon

WP_264353689.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:384466-384876:-1:exon

TRD_RS01775
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01775
old locus tag: trd_0384
so part of: sequence
location: 384996..385484
location: region:384996-385484:1
so has part: feature:384996-385484:1:exon
subclass of: SO_0000010

position:384996:1
position: 384996
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:385484:1
position: 385484
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:384996-385484:1:exon

TRD_RS01775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01775
old locus tag: trd_0384
inference: COORDINATES: protein motif:HMM:NF013738.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: iron-sulfur cluster assembly scaffold protein
translation: MDKQELMEQIVEHYRRPRHRHALPDADVVMPGGNPGCGDIVTIYLKVDEQGHLIAEASFEGEGCTISQAAADILLDVVNEERWTLEQVLEADYHLMEELIGEEAVKLRPRCATLALGTLKAAVTKYLRDQLRREAGLEVVERENERFGIVTGELPSAEASHS
SIO_010081: TRD_RS01775
subclass of: SO_0000673
so part of: TRD_RS01775
location: 384996..385484
location: region:384996-385484:1
so has part: feature:384996-385484:1:exon

WP_041435913.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:384996-385484:1:exon

TRD_RS01780
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01780
old locus tag: trd_0383
so part of: sequence
location: complement(385481..385852)
location: region:385481-385852:-1
so has part: feature:385481-385852:-1:exon
subclass of: SO_0000010

position:385481:-1
position: 385481
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:385852:-1
position: 385852
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:385481-385852:-1:exon

TRD_RS01780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01780
old locus tag: trd_0383
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDEKQRDDAETATAREQLTVEMTRTTFQRRVATRASPDAVLERAIAYFTARGYRAGRTGRPNQVYVIGKREGVLPRVTAEILVQPNVGRGRATLVTVSGFGPQLREHLAAFVEELRRERRSTN
SIO_010081: TRD_RS01780
subclass of: SO_0000673
so part of: TRD_RS01780
location: complement(385481..385852)
location: region:385481-385852:-1
so has part: feature:385481-385852:-1:exon

WP_012641791.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:385481-385852:-1:exon

TRD_RS01785
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01785
old locus tag: trd_0385
so part of: sequence
location: complement(385915..386487)
location: region:385915-386487:-1
so has part: feature:385915-386487:-1:exon
subclass of: SO_0000010

position:385915:-1
position: 385915
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:386487:-1
position: 386487
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:385915-386487:-1:exon

TRD_RS01785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01785
old locus tag: trd_0385
inference: COORDINATES: protein motif:HMM:NF013122.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 3'-5' exonuclease
translation: MDRRRCAQAWARAICSSSGVVILDTETTGIRSQDQVIELAVLDTHGNVLLETLVKPSCPIDPAALRVHGLSEAHLAHAPEWPVVYRELRVIFDRARLIVTYNAPFDRRLIEQTCRCYGLSLPDLSWDCAMRRFAEYAGPPPTESWRNYHRLSEALQRLGIPHPGAHRAAADAEACRRLVRAMAAGQPLRF
SIO_010081: TRD_RS01785
subclass of: SO_0000673
so part of: TRD_RS01785
location: complement(385915..386487)
location: region:385915-386487:-1
so has part: feature:385915-386487:-1:exon

WP_012641792.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:385915-386487:-1:exon

TRD_RS01790
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01790
old locus tag: trd_0386
so part of: sequence
location: complement(386502..387188)
location: region:386502-387188:-1
so has part: feature:386502-387188:-1:exon
subclass of: SO_0000010

position:386502:-1
position: 386502
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:387188:-1
position: 387188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:386502-387188:-1:exon

TRD_RS01790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01790
old locus tag: trd_0386
inference: COORDINATES: protein motif:HMM:NF001911.0
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: metal-dependent hydrolase
translation: MAVTVRYLGHAAFAVEAEGKQVVIDPFLTGNPRAAAKPDELHPVAILLTHAHADHVGDALALSKRTKAPVIATFELASFLQQQGAEAIPANHGGTVRFDGGTVKLVPAWHTSSYGEQFLAPGVPAGLVVRMGGKTLYFAGDTCLFGDMALIGEEGLDLAALPIGDHFTMGPADAVKAVKLLAPKVVVPCHYNTFPLIEQDPHAFAKAVEEQTSARCVVLQPGEQLVLE
SIO_010081: TRD_RS01790
subclass of: SO_0000673
so part of: TRD_RS01790
location: complement(386502..387188)
location: region:386502-387188:-1
so has part: feature:386502-387188:-1:exon

WP_012641793.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:386502-387188:-1:exon

TRD_RS01795
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01795
old locus tag: trd_0387
so part of: sequence
location: complement(387231..388841)
location: region:387231-388841:-1
so has part: feature:387231-388841:-1:exon
subclass of: SO_0000010

position:387231:-1
position: 387231
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:388841:-1
position: 388841
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:387231-388841:-1:exon

TRD_RS01795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01795
old locus tag: trd_0387
EC number: 3.5.-.-
inference: COORDINATES: protein motif:HMM:NF019581.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: amidohydrolase
translation: MVCDLILHNANILTLDPAQPRARAVAMSHGRILAIGDDPEILGYRTAQTRVLDLGGATVLPGFDDAHCHPLGLGLSLEWVDVSPVAAPTLERLLDEIRKAAQELPPDRWLLARGYDDTRLDVQRHPTRWELDRVTGNRPTIVIRTCGHMLVANSAALARAGITRETPDPEGGRIVRDETGEPTGLLQERAQELVRRLVPEPTVRDLEQALRRAGDRFLALGITSVTEAGISRPEELLAYQNLHQRGELPVRARIMLLIDHLLEPAERLGLRSGFGDAWLRIGPFKLFQDGAGGARTAAMSIAYPEEPDNYGLAYYTQDQLDEAFRRVARLGAQAAAHAIGDRAIEMVLTAYERALQAHPIHDHRWRIEHCGMLRPDLLERMARLGVVAVPQPAFGYYLGDAYRRNFSEEWLALAYPTRAWLERGIAVAFSSDAPVISPDPWVGIRAAVLRQTLTGEPFGPEQRVTVLEAIRLYTAGGAYASFEEHQRGRITPGFLADLLVVDRDPLAIDPEELPTLRTLLTVVDGRIAWKAADAVF
SIO_010081: TRD_RS01795
subclass of: SO_0000673
so part of: TRD_RS01795
location: complement(387231..388841)
location: region:387231-388841:-1
so has part: feature:387231-388841:-1:exon

WP_012641794.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:387231-388841:-1:exon

TRD_RS01800
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01800
old locus tag: trd_0388
so part of: sequence
location: complement(388866..390470)
location: region:388866-390470:-1
so has part: feature:388866-390470:-1:exon
subclass of: SO_0000010

position:388866:-1
position: 388866
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:390470:-1
position: 390470
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:388866-390470:-1:exon

TRD_RS01800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01800
old locus tag: trd_0388
EC number: 3.5.-.-
inference: COORDINATES: protein motif:HMM:NF019581.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: amidohydrolase
translation: MHADIVLVNGTVLTASSHTPVAEAIALRGEWILAVGAERVVHHFVGPATEVIDLQGRTVTPGFNDAHCHPIALGMSLREVDARTPPNRSIEEIVQRIAQRAASQEPGTWIVARGYDQAHLAEGRHPTRDDLDRATQRHPVLLIRACGHIGVANSLALAIAGIGPETPDPPGGTIDRGPDGQPTGVVREAALQLVRARLPQPSVEDLAEAIRLAGETFLSFGVTSVQEAGIRRAEEFLAYQSLAQRGTLPVRTSLMILINDLLEPCRELGLRTGFGDAWLRIGPAKLFLDGSIGGRTARMSQPYLDRDTLGLWMDEPDTMKRKIVEAHCAGFQCCAHAIGDAAIELLLDAFEEALRRQPRPDHRHRIEHCSILRPDLVDRIARLGAVPIPGTTFLYDFQEVYLSGLGHERLRYAYALRTFLDRGIVAAASSDTPVCSPNAMLGIQTMVTRRNAAGNVLWPEESITLEEAIRVYTLNGAYASFEERIKGTLEPGKLADVVVLETDLRSVQPEELGRVRVDYTIVGGRIVYARPGAA
SIO_010081: TRD_RS01800
subclass of: SO_0000673
so part of: TRD_RS01800
location: complement(388866..390470)
location: region:388866-390470:-1
so has part: feature:388866-390470:-1:exon

WP_012641795.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:388866-390470:-1:exon

TRD_RS01805
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01805
old locus tag: trd_0390
so part of: sequence
location: complement(390688..391527)
location: region:390688-391527:-1
so has part: feature:390688-391527:-1:exon
subclass of: SO_0000010

position:390688:-1
position: 390688
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:391527:-1
position: 391527
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:390688-391527:-1:exon

TRD_RS01805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01805
old locus tag: trd_0390
inference: COORDINATES: protein motif:HMM:NF013672.2
GO function: GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
GO process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: polysaccharide deacetylase family protein
translation: MNERTPPTWPAGHRAALVVSIDVDGEYGVIAQHGASDWYWRTQAQYDLDAGLIRLLELLADYDIRATFCWVGRVAEERPDAVRSVSAAGHEIATHGWDHQIYTRMTREEQREDLIRTREYLATLTGTVPVGHKSPFWHSTPDTVPLLQELGFQWNMDVALGDLPVVQRPDPTREPIIQLPPSRWWDDYTFFIEQALPPRLVAEFWEEDFAVVRAEGKLMCLTVHPWITGRPGPSRALARFLDFVVTLGDVWIARADHVALWWRERERDLDQSATSSTES
SIO_010081: TRD_RS01805
subclass of: SO_0000673
so part of: TRD_RS01805
location: complement(390688..391527)
location: region:390688-391527:-1
so has part: feature:390688-391527:-1:exon

WP_012641797.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:390688-391527:-1:exon

TRD_RS01810
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01810
old locus tag: trd_0391
so part of: sequence
location: complement(391527..392723)
location: region:391527-392723:-1
so has part: feature:391527-392723:-1:exon
subclass of: SO_0000010

position:392723:-1
position: 392723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:391527-392723:-1:exon

TRD_RS01810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01810
old locus tag: trd_0391
inference: COORDINATES: protein motif:HMM:NF012488.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: aminotransferase class V-fold PLP-dependent enzyme
translation: MQESDKVAAIRAAMPAVREYVYLNTGTFGPLPTLVQEAMQREAEREFLHGRITSESYERATDLKRRAREEVARLLGCRPDQIALTRHTTDGINLAVMGLDWQPGDEIVTTDMEHPGAQGPVFNVARRYGVVVRTARLGTGAGDVAGTLARLIGRRTRMVVLSHLTWNTGAILPIAEIATLAHQHGALIVVDGAQSAGSIPTDVRALGADVYAIPGQKWLCGPEGTGAVYFSDEALDRLQLTIVGYASLAPNGLEPIGGYFLPKPTAERFEVGGVNVPAIAGQVAALRWLREDIGYSWIFQRVAALGRRAADRLASLDGVDVLTPPDRMAGLVSFTVRDGDPQALVAALAQRNVIVRWITHPYSLRVSTGFYNTEDDIERLVDALEDARRATAASRSMV
SIO_010081: TRD_RS01810
subclass of: SO_0000673
so part of: TRD_RS01810
location: complement(391527..392723)
location: region:391527-392723:-1
so has part: feature:391527-392723:-1:exon

WP_012641798.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:391527-392723:-1:exon

TRD_RS01815
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01815
old locus tag: trd_0392
so part of: sequence
location: complement(392910..394118)
location: region:392910-394118:-1
so has part: feature:392910-394118:-1:exon
subclass of: SO_0000010

position:392910:-1
position: 392910
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:394118:-1
position: 394118
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:392910-394118:-1:exon

TRD_RS01815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01815
old locus tag: trd_0392
inference: COORDINATES: protein motif:HMM:NF013237.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PLP-dependent aspartate aminotransferase family protein
translation: MDDQRRLHFRFATRAVHAGERPNPRDFIPTATPIYPTSTFLYQNIEQMDAALGGAVGVFVYGRYGNPTTEALETAVASLEEQEAALAFASGMAALHATILSCVEAGDRIVASRDLYGQTITLLRTIFGSLGVRVEFVDILDLAQVEAALRRGGVRLLLCETISNPLLRVTDLPSLAEIAHRYGARLAVDNTFATPYLVRPGTLGADYVIHSATKYLSGHGDVTAGIVATTADRRWELNEINKTIGSILGPFEAFLVLRGLKTLPLRMHRQCENASRIACWLAEHPLIERVHYPGLPTHPSHETAARLLPPGLYGAIVSFEIRHGTRERVTAFLERLRLILPATTLGDVYSEILYPVMASHRGLSPEERQAMGISDGLVRLSVGIEDPEDIIADLEQALASLA
SIO_010081: TRD_RS01815
subclass of: SO_0000673
so part of: TRD_RS01815
location: complement(392910..394118)
location: region:392910-394118:-1
so has part: feature:392910-394118:-1:exon

WP_012641799.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:392910-394118:-1:exon

TRD_RS01820
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01820
old locus tag: trd_0394
so part of: sequence
location: 394394..396139
location: region:394394-396139:1
so has part: feature:394394-396139:1:exon
subclass of: SO_0000010

position:394394:1
position: 394394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:396139:1
position: 396139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:394394-396139:1:exon

TRD_RS01820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01820
old locus tag: trd_0394
inference: COORDINATES: protein motif:HMM:NF012706.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: peptide ABC transporter substrate-binding protein
translation: MKRGRIRALLRLVSVLALALPILAACARGQATPTPAPSGATPTAGQTPAAVSSPTQAAVTTPTGEKVLRIHEYTYPDVFDPQKSSFSNEIAVLHMNYEGLTRLDKDLNTVPAAAESWEFNQDGTVVTFHLRAGLKYSDGTPLTAERFRYAVERTCDPKTAGEYQSILFDIVGCEEFAGTDPNDQAAYEAARQKLGVEAPDDRTLIVRLTHPAPYFPTIASLWVFYPARKELIEQGGENWWKDPKLQIGNGPFQMVEVVEDQRIRFVANTNYWEGRPKLDAVEIIYQKESSVALEAYKAGQLDMFSPDPSQLPAIKSDPELSKQLVTYPAATTIQLSFNLTKEPFTDKKVREAFAYAFDRKTYCEQIRNGDCTPTLEWIPPGIPGHIGTDKYGFDPAKAKQALAESKYGGPDKLPEIKLTFNSDDPAARPRVEWIAGQYRDILGVNITLEPVDGKTLVAMRKDPSTYPQMTMAGWIQDYPDPQNWLSVYWKCDATFAQRFGYCNKQFDELVTKADQELDQQKRIELYKQAHQILIDDVPGPFLYNPLNIWLVKPSVTGYSPTPSDDAFPGEFASLMTLDIKK
SIO_010081: TRD_RS01820
subclass of: SO_0000673
so part of: TRD_RS01820
location: 394394..396139
location: region:394394-396139:1
so has part: feature:394394-396139:1:exon

WP_143714595.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:394394-396139:1:exon

TRD_RS01825
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01825
old locus tag: trd_0395
so part of: sequence
location: 396199..397209
location: region:396199-397209:1
so has part: feature:396199-397209:1:exon
subclass of: SO_0000010

position:396199:1
position: 396199
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:397209:1
position: 397209
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:396199-397209:1:exon

TRD_RS01825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01825
old locus tag: trd_0395
inference: COORDINATES: protein motif:HMM:NF012738.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter permease
translation: MLLSFIVRRVLWLIPVVLAVTTITFFLMHQTPGGPWDREKPVAKATLEALNAKFGLNKPVWVNVAAVRERWNSGERNPLRLTLAFLDSQYFRYLWGLVRLDLGPSYRSKGTESVQSILWRKFPTTAKVGLVATAFAVVVGIPLGVLGALRQNSWIDYLSLTVATLGVSVPSFVIGVLVVIGLSQLFGVKPIRAPEEWRGFSAAYLAPGIVLGLGTMSYLTRLTRSSMLEVIRQDYVRTARAKGLSEFRVVTRHMIRNALIAVVTVLGPAVAGLVTGSFIIETIFNVPGMGREYVVAIAARDYSMIMGTTLLYALFVAIANIWVDVMYGFLDPRIRG
SIO_010081: TRD_RS01825
subclass of: SO_0000673
so part of: TRD_RS01825
location: 396199..397209
location: region:396199-397209:1
so has part: feature:396199-397209:1:exon

WP_012641802.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:396199-397209:1:exon

TRD_RS01830
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01830
old locus tag: trd_0396
so part of: sequence
location: 397223..398212
location: region:397223-398212:1
so has part: feature:397223-398212:1:exon
subclass of: SO_0000010

position:397223:1
position: 397223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:398212:1
position: 398212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:397223-398212:1:exon

TRD_RS01830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01830
old locus tag: trd_0396
inference: COORDINATES: protein motif:HMM:NF012738.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter permease
translation: MTTVTTPRQLDRDLALRRPPRSLWSDAWRRFRKNWLALLGLGYIAFLAVVAVAAPIIAPHNPVKSDVARAGVFRQAAWVRDPNPMRTGSWEYPLGTDSVGRDVFSRLVYGTRVSLVVGFVPMVFTVSIGMLIGLVAGYLGGRIDNLLMRFTDVVYAFPDLLLFIIMQVAFQDAWIGKLLNGLVLLFITLSLVSWVTVARLVRGEVLAVKQKEFVEAARAIGANGLQVVLRHIVPNTLGPVIVVAAYIVPGAIISEAILSYLGIGIRPSVRLDAPFPTSWGSMILEGSKAWESQPWMLIAPTLAVASITLAFTFIGDGLRDAFDPRQAER
SIO_010081: TRD_RS01830
subclass of: SO_0000673
so part of: TRD_RS01830
location: 397223..398212
location: region:397223-398212:1
so has part: feature:397223-398212:1:exon

WP_012641803.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:397223-398212:1:exon

regulatory
type: Feature
subclass of: SO_0000001
RO_0002162: 309801
regulatory class: riboswitch
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF00059
inference: COORDINATES: profile:INFERNAL:1.1.4
note: TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
bound moiety: thiamine pyrophosphate
so part of: sequence
location: 398251..398359
location: region:398251-398359:1
so has part: feature:398251-398359:1:region

position:398251:1
position: 398251
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:398359:1
position: 398359
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:398251-398359:1:region

TRD_RS01835
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: thiD
locus tag: TRD_RS01835
old locus tag: trd_0398
so part of: sequence
location: 398445..399278
location: region:398445-399278:1
so has part: feature:398445-399278:1:exon
subclass of: SO_0000010

position:398445:1
position: 398445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:399278:1
position: 399278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:398445-399278:1:exon

TRD_RS01835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: thiD
locus tag: TRD_RS01835
old locus tag: trd_0398
EC number: 2.7.1.49
EC number: 2.7.4.7
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006590957.1
GO function: GO:0008902 - hydroxymethylpyrimidine kinase activity [Evidence IEA]; GO:0008972 - phosphomethylpyrimidine kinase activity [Evidence IEA]
GO process: GO:0009228 - thiamine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase
translation: MSMRVPKALTIAGSDSGAGAGIQADLKTFSALGVYGSTVITAITAQNTLGVTAVHEIPTDIVAAQLDAVMEDIGADAAKTGMLSSAAIIETVASGVRRHRIDRLVVDPVMVAKSGDRLLREDAISALRETLLPLAFIVTPNAPEAEVLCGRPVRNEEEMREAARIIHGFGARYVVVKGGHVEGDQVVDLLFDGAHFERFALPRVATPHTHGTGCTFSAAIAAFLARGFDVPTAVWEAKQYLHRALEAAFAIGRGRSPVHHFHAWWAPAPETQEVRDG
SIO_010081: TRD_RS01835
subclass of: SO_0000673
so part of: TRD_RS01835
location: 398445..399278
location: region:398445-399278:1
so has part: feature:398445-399278:1:exon

WP_012641805.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:398445-399278:1:exon

TRD_RS01840
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01840
old locus tag: trd_0399
so part of: sequence
location: 399271..400080
location: region:399271-400080:1
so has part: feature:399271-400080:1:exon
subclass of: SO_0000010

position:399271:1
position: 399271
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:400080:1
position: 400080
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:399271-400080:1:exon

TRD_RS01840
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01840
old locus tag: trd_0399
inference: COORDINATES: protein motif:HMM:NF017501.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: thiazole synthase
translation: MAETAERAWTTIEDEPLKIADREFRSRLILGTGKWRSNEEMLAALEASGCEMVTVALRRIDFDDPKSRSILEVIDWTKYQILPNTAGCRTAEEAIRVARLARAMGLSNWVKLEVIPDPKYLLPDPIGTLEAAKVLVKEGFVVLPYINQDPVLAKQLEEIGCATVMPLASPIGSGQGLPDFRWIQIIVEQASVPVIVDAGIGAPSDAALAMELGADACLINTAIAQAGDPVKMARAMRLAIEAGRLCYLAGRIPKKPYASASSPLEGVVR
SIO_010081: TRD_RS01840
subclass of: SO_0000673
so part of: TRD_RS01840
location: 399271..400080
location: region:399271-400080:1
so has part: feature:399271-400080:1:exon

WP_012641806.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:399271-400080:1:exon

TRD_RS01845
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: thiE
locus tag: TRD_RS01845
old locus tag: trd_0400
so part of: sequence
location: 400091..400759
location: region:400091-400759:1
so has part: feature:400091-400759:1:exon
subclass of: SO_0000010

position:400091:1
position: 400091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:400759:1
position: 400759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:400091-400759:1:exon

TRD_RS01845
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: thiE
locus tag: TRD_RS01845
old locus tag: trd_0400
EC number: 2.5.1.3
inference: COORDINATES: protein motif:HMM:TIGR00693.1
GO function: GO:0004789 - thiamine-phosphate diphosphorylase activity [Evidence IEA]
GO process: GO:0009228 - thiamine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: thiamine phosphate synthase
translation: MTTWRGVRLREALRLYVITDRALARGRPDIEIAREAIAGGATALQLRWKAGPLSEALQVGHALRALCREAGVLFVVNDRVDLALALEADGVHVGVSDLPVPETRKLVGESMVVGFSPETLEQALAAEAAGADYLGVGPVYPTTTKPDAGPAVGLEHLAQIAGAVGIPVVGIGGITAVNAAAVIRAGAVGVAVISAVVGAEDVREAARQLREVVDAALAERGR
SIO_010081: TRD_RS01845
subclass of: SO_0000673
so part of: TRD_RS01845
location: 400091..400759
location: region:400091-400759:1
so has part: feature:400091-400759:1:exon

WP_012641807.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:400091-400759:1:exon

TRD_RS01850
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: thiE
locus tag: TRD_RS01850
old locus tag: trd_0401
so part of: sequence
location: 400763..401389
location: region:400763-401389:1
so has part: feature:400763-401389:1:exon
subclass of: SO_0000010

position:400763:1
position: 400763
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:401389:1
position: 401389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:400763-401389:1:exon

TRD_RS01850
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: thiE
locus tag: TRD_RS01850
old locus tag: trd_0401
EC number: 2.5.1.3
inference: COORDINATES: protein motif:HMM:TIGR00693.1
GO function: GO:0004789 - thiamine-phosphate diphosphorylase activity [Evidence IEA]
GO process: GO:0009228 - thiamine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: thiamine phosphate synthase
translation: MRVPRLHLVTDPEVCPFDRLLALLPALVAAGVDGVHLRAPDRAAAELLAVAQVARRVVVPPAVLLVNDRIDAALLSEADGVQLPERGLPPEGARRLLGRGRFIGCSVHSVTAAERAAQAGADFLLFGNVFETASKPGRAAAGLEALRAVTRAVPCPVIAIGGITPERVPEVVATGAHGVAVIRGILAAPDPVAAVHAFRAALDRVGAV
SIO_010081: TRD_RS01850
subclass of: SO_0000673
so part of: TRD_RS01850
location: 400763..401389
location: region:400763-401389:1
so has part: feature:400763-401389:1:exon

WP_012641808.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:400763-401389:1:exon

TRD_RS01855
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: thiS
locus tag: TRD_RS01855
old locus tag: trd_0402
so part of: sequence
location: 401386..401592
location: region:401386-401592:1
so has part: feature:401386-401592:1:exon
subclass of: SO_0000010

position:401386:1
position: 401386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:401592:1
position: 401592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:401386-401592:1:exon

TRD_RS01855
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: thiS
locus tag: TRD_RS01855
old locus tag: trd_0402
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003390495.1
GO function: GO:0003824 - catalytic activity [Evidence IEA]
GO process: GO:0009228 - thiamine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: sulfur carrier protein ThiS
translation: MTIRVILNGKRVELDGARTIFDLLRSRGLDPRLVAVERNGEIVPRDRYEECELRDGDVIEVVHFVGGG
SIO_010081: TRD_RS01855
subclass of: SO_0000673
so part of: TRD_RS01855
location: 401386..401592
location: region:401386-401592:1
so has part: feature:401386-401592:1:exon

WP_012641809.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:401386-401592:1:exon

TRD_RS01860
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01860
old locus tag: trd_0403
so part of: sequence
location: complement(401646..402005)
location: region:401646-402005:-1
so has part: feature:401646-402005:-1:exon
subclass of: SO_0000010

position:401646:-1
position: 401646
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:402005:-1
position: 402005
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:401646-402005:-1:exon

TRD_RS01860
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01860
old locus tag: trd_0403
inference: COORDINATES: protein motif:HMM:NF013222.2
GO function: GO:0003824 - catalytic activity [Evidence IEA]
GO process: GO:0006281 - DNA repair [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MGMT family protein
translation: MGTAKRSQQSSPFAERVYAIVRRIPPGRVTTYGRIARAAGLTRSARMVGWLLHEAPADVAAVAHRVVNRNGELTGGWAWGHPSVMRALLEEEGVTFVDEYRVDLERHLWEPEDEFSERS
SIO_010081: TRD_RS01860
subclass of: SO_0000673
so part of: TRD_RS01860
location: complement(401646..402005)
location: region:401646-402005:-1
so has part: feature:401646-402005:-1:exon

WP_012641810.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:401646-402005:-1:exon

TRD_RS01865
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01865
old locus tag: trd_0404
so part of: sequence
location: complement(402010..402396)
location: region:402010-402396:-1
so has part: feature:402010-402396:-1:exon
subclass of: SO_0000010

position:402010:-1
position: 402010
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:402396:-1
position: 402396
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:402010-402396:-1:exon

TRD_RS01865
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01865
old locus tag: trd_0404
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTESRSVLDRLLPLAHRSELIAAGLATHLAFNVVAALAFRLAAQSSSWLAFLLWQVVGNLAGFLTVVALTVLLRFVPLSVAYPITTGLSVIAVQVVAARLLLHEPLPLRVWFGAILIVLGILFVGGRI
SIO_010081: TRD_RS01865
subclass of: SO_0000673
so part of: TRD_RS01865
location: complement(402010..402396)
location: region:402010-402396:-1
so has part: feature:402010-402396:-1:exon

WP_012641811.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:402010-402396:-1:exon

TRD_RS01870
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: secA
locus tag: TRD_RS01870
old locus tag: trd_0405
so part of: sequence
location: 402472..405117
location: region:402472-405117:1
so has part: feature:402472-405117:1:exon
subclass of: SO_0000010

position:402472:1
position: 402472
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:405117:1
position: 405117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:402472-405117:1:exon

TRD_RS01870
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: secA
locus tag: TRD_RS01870
old locus tag: trd_0405
inference: COORDINATES: protein motif:HMM:NF006630.0
GO function: GO:0005524 - ATP binding [Evidence IEA]
GO process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO:0017038 - protein import [Evidence IEA]; GO:0006605 - protein targeting [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: preprotein translocase subunit SecA
translation: MGTGAVNASARPIVGDESMRNVLKKILGDPNERELKRLRRIVDEINALEPDYQRLSDEQLRAKTDEFKARLEYGETLDDILVEAFATVREAARRTLNMRHFDVQLMAGIVLHEGKIAEMKTGEGKTLVATLPLYLNALLGRGCHLVTPNDYLSRVGGGWMGPIYHFLGVSVGVITHEFAGIYDPTYIQPDPSPDDRLNHWRPVSRREAYLADITYGTNHEFGFDYLRDNLVYRPEDIVQRELYYAIVDEVDNILIDEARTPLIISGQARETVDRYYQFAQIARQLRRDVHYTVDLKHRTVTLTEAGIDRVERLLGIPEGHSLYDDRYSDAVHYLEQALKAKELYLRDRDYIVRDGEVIIVDEFTGRMMPGRRYSEGLHQAIEAKEGLRVRQETVTQATITYQNYFRMYEKLAGMTGTAATEAEEFQTIYNLEVVVIPTHKPMIRIDYPDVIYRTEEGKFRAVVREIEEMHAIGRPVLVGTTSIEKSEYLSDLLKRKGIPHEVLNAKHHEREALIVAKAGQRGAVTIATNMAGRGTDIVLGPGVAELGGLHVIGTERHEARRIDNQLRGRAGRQGDPGSSRFYVSLEDELLKRVGTERIQGLLEKLGMDDEHPIESPLVSRMIEEAQKKIEGYNFDLRKHLVEYDSVINKQREVIYGDRRKIVMGENMREHVLGMVRRQLEKAVKQAFESADEPDPESVLRAFAGIVGDSDGLTPRDLEERDENELTELLWQRALARYERREQEFGPETMRVIERLVLLQVMDRLWIEHLTEMEHMRHEVGLQAYGQLDPLVVYKREGYRMFQQLLENIEYDVARLIYRVQLAPALQRPVMQIGTPNRGGDGAGPARKKQKVGRNDPCPCGSGKKYKHCCMKAESGVRAGAG
SIO_010081: TRD_RS01870
subclass of: SO_0000673
so part of: TRD_RS01870
location: 402472..405117
location: region:402472-405117:1
so has part: feature:402472-405117:1:exon

WP_012641812.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:402472-405117:1:exon

TRD_RS01875
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01875
old locus tag: trd_0406
so part of: sequence
location: 405428..406129
location: region:405428-406129:1
so has part: feature:405428-406129:1:exon
subclass of: SO_0000010

position:405428:1
position: 405428
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:406129:1
position: 406129
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:405428-406129:1:exon

TRD_RS01875
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01875
old locus tag: trd_0406
inference: COORDINATES: protein motif:HMM:NF012455.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MIP/aquaporin family protein
translation: MRELTAEFIGTMLLVLLTDGTVATARLARSHGVGGNWLTIAVGSAIAVSIAVGLAGPISGGHVNPAVTFALAAWGLFPAERVAAYVGAQLAGGFSGAVLVWLLFWRHWEATSDPAVKRGVFCTGPAIRYWPANLATECVGTAVLALGVGAAVAGRVPGAVVPWWIGGLVLAIGLALGGTTGFALNPARDAAPRLAYTLLPIAGRGDADWRYGWIPIVGPVLGALLGIGVWRLL
SIO_010081: TRD_RS01875
subclass of: SO_0000673
so part of: TRD_RS01875
location: 405428..406129
location: region:405428-406129:1
so has part: feature:405428-406129:1:exon

WP_012641813.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:405428-406129:1:exon

TRD_RS13460
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS13460
old locus tag: trd_0407
so part of: sequence
location: complement(406434..407867)
location: region:406434-407867:-1
so has part: feature:406434-407867:-1:exon
subclass of: SO_0000010

position:406434:-1
position: 406434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:407867:-1
position: 407867
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:406434-407867:-1:exon

TRD_RS13460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS13460
old locus tag: trd_0407
inference: COORDINATES: protein motif:HMM:NF039815.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: thrombospondin type 3 repeat-containing protein
translation: MHVGPRHRQRPPVSWLILGLLLLAACNRAVTTTPTQSPQPAIAQRWVATGPVAPVDAGSSSVVLTIRAPAETSVSEIELRITPPEGQPQTLGPYSVQPGQTIQVEVDLTQLSGTATAGEWRAEWIDRAQPDRVLAVVSFTTRSARTITWQSSVPRTSIPAGDCRTNRTIVELGIRARGADSDESFMVYAVIESPSGQKLSLPPIEISGDQWSTLRASLCSVVPRAEQLSGTWTVRWYRSDQPTRPILSDSFGVVPAPTPTATPMPTLEWRVPTEPVQPYDCGAAVDIQVRNTAPGNQVTPVIVQAIPPGKGPVDLARVELRGNEWVTVSLVYCQAAGGAEIAGSWAVRAVDAAARQVEFGRATFEVRAIPAPTQPPAPKPQPQPQPAPPPPPPPRASVDTDGDGLPDDEELSFGTDPYNSDSDGDGLSDGSEVYVYGTDPRKRDTDVDGYTDFEEILQGSDPWDPCSPNQFAYNCQL
SIO_010081: TRD_RS13460
subclass of: SO_0000673
so part of: TRD_RS13460
location: complement(406434..407867)
location: region:406434-407867:-1
so has part: feature:406434-407867:-1:exon

WP_143714596.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:406434-407867:-1:exon

TRD_RS14080
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS14080
old locus tag: trd_0408
so part of: sequence
location: complement(408270..408932)
location: region:408270-408932:-1
so has part: feature:408270-408932:-1:exon
subclass of: SO_0000010

position:408270:-1
position: 408270
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:408932:-1
position: 408932
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:408270-408932:-1:exon

TRD_RS14080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS14080
old locus tag: trd_0408
inference: COORDINATES: protein motif:HMM:NF016221.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: copper chaperone PCu(A)C
translation: MRTVLDRIRGWFVLALTVVLASLVVSACRGTEPTPTPAPSPTPAAAVQPSPTPQPTPTATPTPTPMPTPTPMAATPTMGHGMSGHGMGSAMPGVSNEFRAGTLVIRNVWARAASQADALSAVYMVIENTGDQPDRLLHAHCDVAGTVELHETKMEGGVMKMQPVDGIDIPAKGTVELKPGGLHIMLIGLTRDLNPGDEIELELHFDKAGHVPVKAVVQKP
SIO_010081: TRD_RS14080
subclass of: SO_0000673
so part of: TRD_RS14080
location: complement(408270..408932)
location: region:408270-408932:-1
so has part: feature:408270-408932:-1:exon

WP_041436305.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:408270-408932:-1:exon

TRD_RS01890
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01890
old locus tag: trd_0409
so part of: sequence
location: complement(408977..409597)
location: region:408977-409597:-1
so has part: feature:408977-409597:-1:exon
subclass of: SO_0000010

position:408977:-1
position: 408977
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:409597:-1
position: 409597
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:408977-409597:-1:exon

TRD_RS01890
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01890
old locus tag: trd_0409
inference: COORDINATES: protein motif:HMM:NF012787.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SCO family protein
translation: MPTRPWLRRLVVAELAAIAIVLAVVGWYVWQSRAAPSLNGMLLDPPQEIPAIQLTGSDGQPHALTDFQGKVTVVFFGYTHCPDVCPMTASTMARARAMLGNQADRVQLVFVSVDPERDSPERLASYLAKYDPTFLGLTGDEDRIRELATVFGVHYAKVESTSALGYLVEHTSSSFVLDTQGKLRAVLPFGLTPEQVASDLRALLRR
SIO_010081: TRD_RS01890
subclass of: SO_0000673
so part of: TRD_RS01890
location: complement(408977..409597)
location: region:408977-409597:-1
so has part: feature:408977-409597:-1:exon

WP_012641816.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:408977-409597:-1:exon

TRD_RS01895
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01895
old locus tag: trd_0410
so part of: sequence
location: complement(409609..410256)
location: region:409609-410256:-1
so has part: feature:409609-410256:-1:exon
subclass of: SO_0000010

position:409609:-1
position: 409609
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:410256:-1
position: 410256
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:409609-410256:-1:exon

TRD_RS01895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01895
old locus tag: trd_0410
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFVDRGWFIMVRRLALIVVLLLATLSIVWSALAAPRVLPRLRLAPGFGLEDPSGKLVSSDSLRGQILVVTFGSAECGTDCASRGQLLATAVAGTETTGRVELIWIASEPVSREQLAVLSETLAQHGHPWRVLGSSDRRELDLTLSGFRVPRHPDGTVDPIIVIVDPLGIVRAEYRIAPSPEMLTRDLEALEREIRESQGMRRYLYEAAHLFRCYV
SIO_010081: TRD_RS01895
subclass of: SO_0000673
so part of: TRD_RS01895
location: complement(409609..410256)
location: region:409609-410256:-1
so has part: feature:409609-410256:-1:exon

WP_012641817.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:409609-410256:-1:exon

TRD_RS01900
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01900
old locus tag: trd_0411
so part of: sequence
location: complement(410304..410660)
location: region:410304-410660:-1
so has part: feature:410304-410660:-1:exon
subclass of: SO_0000010

position:410304:-1
position: 410304
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:410660:-1
position: 410660
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:410304-410660:-1:exon

TRD_RS01900
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01900
old locus tag: trd_0411
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFRGFASLVTIAVLFGAALAATVVPTTCTCGAAAPHPHALFELPGHYHGSPAEHASTSDLPDGPVVTAPAMPFALGTLVPVVATAILTLQLGIRRSPLFVTGTIPPGVDHRPPIPPPR
SIO_010081: TRD_RS01900
subclass of: SO_0000673
so part of: TRD_RS01900
location: complement(410304..410660)
location: region:410304-410660:-1
so has part: feature:410304-410660:-1:exon

WP_012641818.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:410304-410660:-1:exon

TRD_RS01905
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01905
old locus tag: trd_0412
so part of: sequence
location: complement(410967..411905)
location: region:410967-411905:-1
so has part: feature:410967-411905:-1:exon
subclass of: SO_0000010

position:410967:-1
position: 410967
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:411905:-1
position: 411905
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:410967-411905:-1:exon

TRD_RS01905
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01905
old locus tag: trd_0412
inference: COORDINATES: protein motif:HMM:NF012517.2
GO function: GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LLM class flavin-dependent oxidoreductase
translation: MPGMQFGIHVGPQNTTTDELRQLWRFADAHGFSWFSVWDHFYARTSDRIPHYEAVALLAALACDTQRIRFGCMVFAVQFRNIGLLAKSIVTIDHLSNGRLEVGLGAGWHEPEYRAFGYPFLSDRERLDQLEEGITALRRLLQEDAVTFEGRWIQLREARVYPKPLQPRLPLWIGGAGERRTARIAARHADGWNIPYVSPEGFRQKRAALEHWCEVEGRDPATLQIAVQVGLYMATEDDERTVSRLRERLVEQVGPQALEQPGWLIGGPDRISALLAEYHAAGADWINVTVRPPVDFEALQAFVERVMPHFAS
SIO_010081: TRD_RS01905
subclass of: SO_0000673
so part of: TRD_RS01905
location: complement(410967..411905)
location: region:410967-411905:-1
so has part: feature:410967-411905:-1:exon

WP_012641819.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:410967-411905:-1:exon

TRD_RS01910
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: dapB
locus tag: TRD_RS01910
old locus tag: trd_0413
so part of: sequence
location: complement(412021..412797)
location: region:412021-412797:-1
so has part: feature:412021-412797:-1:exon
subclass of: SO_0000010

position:412021:-1
position: 412021
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:412797:-1
position: 412797
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:412021-412797:-1:exon

TRD_RS01910
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: dapB
locus tag: TRD_RS01910
old locus tag: trd_0413
EC number: 1.17.1.8
inference: COORDINATES: protein motif:HMM:TIGR00036.1
GO function: GO:0008839 - 4-hydroxy-tetrahydrodipicolinate reductase [Evidence IEA]
GO process: GO:0009089 - lysine biosynthetic process via diaminopimelate [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 4-hydroxy-tetrahydrodipicolinate reductase
translation: MLRLALTGVTGRMGRAVLELAASAPDIQLVCGLIRPARDPHEVAAQLPAPLALTSRVAELVQGADVVVDFSHPAVTVAVAEAAAHAGIPLVSGTTGLSEHDQAVILRAAQHVPVVQAANFSLGIALLHWLLPELVARLPTWDVELIERHHRHKRDAPSGTALALARTLLAAREPAPSPLVYGRGPGTAPRQPGEVGIHAVRAGGEVGRHTVLLATDDEAIEVTHWVQSRRAYAQGALEAARRLIGRPPGLYSLQDLVT
SIO_010081: TRD_RS01910
subclass of: SO_0000673
so part of: TRD_RS01910
location: complement(412021..412797)
location: region:412021-412797:-1
so has part: feature:412021-412797:-1:exon

WP_012641820.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:412021-412797:-1:exon

TRD_RS01915
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: dapA
locus tag: TRD_RS01915
old locus tag: trd_0414
so part of: sequence
location: complement(412797..413705)
location: region:412797-413705:-1
so has part: feature:412797-413705:-1:exon
subclass of: SO_0000010

position:413705:-1
position: 413705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:412797-413705:-1:exon

TRD_RS01915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: dapA
locus tag: TRD_RS01915
old locus tag: trd_0414
EC number: 4.3.3.7
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012641821.1
GO function: GO:0008840 - 4-hydroxy-tetrahydrodipicolinate synthase activity [Evidence IEA]
GO process: GO:0009089 - lysine biosynthetic process via diaminopimelate [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 4-hydroxy-tetrahydrodipicolinate synthase
translation: MLRGTFVALITPFAGEEIDEPRLRDLVDWLIANRVDGLVPCGTTGETPSLSDTEWQRVAAVVIEQAAGRVPVIVGTGTNSTMVTIQRTRVARELGATAAMVVTPYYNKPQQDGLYRHVAAIADAVDLPLVIYNVPSRTGVNLAPETARRLLDIAPVIAFKDSSGSLDQVSELVLAVGDRSSVLSGDDSLTLPIIAVGGQGVVSVLANIAPAATATMVRAALDGDLARARQLHGELFPLARALFIETNPVPVKTAAELLGLCSATVRLPLAPLAPANRERLLAALASCPHTASLLARPMGEAA
SIO_010081: TRD_RS01915
subclass of: SO_0000673
so part of: TRD_RS01915
location: complement(412797..413705)
location: region:412797-413705:-1
so has part: feature:412797-413705:-1:exon

WP_012641821.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:412797-413705:-1:exon

TRD_RS01920
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01920
old locus tag: trd_0417
so part of: sequence
location: complement(414082..414807)
location: region:414082-414807:-1
so has part: feature:414082-414807:-1:exon
subclass of: SO_0000010

position:414082:-1
position: 414082
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:414807:-1
position: 414807
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:414082-414807:-1:exon

TRD_RS01920
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01920
old locus tag: trd_0417
inference: COORDINATES: protein motif:HMM:NF015448.2
GO function: GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phenylalanine--tRNA ligase beta subunit-related protein
translation: MAVFCVSSEVFEQFPDYLVIVLVADRVENRRHVERARTLLAESARLACERWRAIDPKALPEIDVWRRAFRRLGWSASTYQSSVEALVRRTLKGNPPPSINPAVDLANAASLRFLVPIGAHDLATAPNGLTVRASLPGDRFLPLGDGAPEEPEVGEIVYVHDHDVRTRRWVWRQSRTGLVTPDSRTILFPIDAFQGVTAAAAVAAADWLSEQLQSLLGATVQRGLVDLNQPVFDSALGDAIS
SIO_010081: TRD_RS01920
subclass of: SO_0000673
so part of: TRD_RS01920
location: complement(414082..414807)
location: region:414082-414807:-1
so has part: feature:414082-414807:-1:exon

WP_012641824.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:414082-414807:-1:exon

TRD_RS01925
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01925
old locus tag: trd_0418
so part of: sequence
location: complement(414826..416133)
location: region:414826-416133:-1
so has part: feature:414826-416133:-1:exon
subclass of: SO_0000010

position:414826:-1
position: 414826
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:416133:-1
position: 416133
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:414826-416133:-1:exon

TRD_RS01925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01925
old locus tag: trd_0418
EC number: 2.4.-.-
inference: COORDINATES: protein motif:HMM:NF012744.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycosyltransferase
translation: MEPTREHREFFPAPGIQRVAMLSVHTSPLAQPGIGSAGGMNVYIRELSRHLAQRGVAVDIYTRRDHPAVPPLVEPFPGVRVYALDAGPATALPKEQLFCYLPTFVSELAYLVHRQQLSYDIVHAHYWLSGWAAHLLQRYWDVPFVHMFHTLAVLKNSVQASPPESVLRLQVEQGLARVADAIIAANPDERETIVNELGAPPSRLCTVPPGVDAEHFRPLDRAAARSRLGIPLDRPVALFIGRIDPVKGIDVLLRAWQRIAQELAPRQPLLLFLGGGFDSSAGLRPDAALSRVIADARELGIAETVRFLGSRPQGELPLFYNAADVCLIPSHYESFGLVAVESMACGTPVVASQVGGLRFSVEHEVSGLHVPPNDPAALATATVRVLTDHQFRTRLQVGARQAALRFSWHRVTTVVARLYEQVARRGILQPCGTTG
SIO_010081: TRD_RS01925
subclass of: SO_0000673
so part of: TRD_RS01925
location: complement(414826..416133)
location: region:414826-416133:-1
so has part: feature:414826-416133:-1:exon

WP_012641825.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:414826-416133:-1:exon

TRD_RS01930
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01930
old locus tag: trd_0419
so part of: sequence
location: complement(416218..416291)
location: region:416218-416291:-1
so has part: feature:416218-416291:-1:exon
subclass of: SO_0000663

position:416218:-1
position: 416218
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:416291:-1
position: 416291
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:416218-416291:-1:exon

TRD_RS01930
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 309801
locus tag: TRD_RS01930
old locus tag: trd_0419
product: tRNA-Arg
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(416256..416258),aa:Arg,seq:cct)
SIO_010081: TRD_RS01930
subclass of: SO_0000673
so part of: TRD_RS01930
location: complement(416218..416291)
location: region:416218-416291:-1
so has part: feature:416218-416291:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:416218-416291:-1:exon

TRD_RS01935
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01935
old locus tag: trd_0420
so part of: sequence
location: 416393..416467
location: region:416393-416467:1
so has part: feature:416393-416467:1:exon
subclass of: SO_0000663

position:416393:1
position: 416393
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:416467:1
position: 416467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:416393-416467:1:exon

TRD_RS01935
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 309801
locus tag: TRD_RS01935
old locus tag: trd_0420
product: tRNA-Pro
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:416428..416430,aa:Pro,seq:cgg)
SIO_010081: TRD_RS01935
subclass of: SO_0000673
so part of: TRD_RS01935
location: 416393..416467
location: region:416393-416467:1
so has part: feature:416393-416467:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:416393-416467:1:exon

TRD_RS01940
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: selA
locus tag: TRD_RS01940
old locus tag: trd_0422
so part of: sequence
location: 416518..417936
location: region:416518-417936:1
so has part: feature:416518-417936:1:exon
subclass of: SO_0000010

position:416518:1
position: 416518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:417936:1
position: 417936
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:416518-417936:1:exon

TRD_RS01940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: selA
locus tag: TRD_RS01940
old locus tag: trd_0422
EC number: 2.9.1.1
inference: COORDINATES: protein motif:HMM:TIGR00474.1
GO function: GO:0004125 - L-seryl-tRNASec selenium transferase activity [Evidence IEA]
GO process: GO:0016260 - selenocysteine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: L-seryl-tRNA(Sec) selenium transferase
translation: MGDEKSAPTRVEQQRLRALPSVSSLIQHPAIAPYAREVGARSLTRLAQLVLEEARQAILAGRATGDVVAVLQRRLQKLSQPRLRSVINATGVIIHTNLGRAPVSDEAARAMAEVAGRYTALEIELESGRRGGRMSELSQLLSLLTGAEAGLVVNNNAAAVLLVLSTFCAGRAVLVSRSQAVEIGGGFRIPDVLRQSGARLVEVGTTNRTYVRDYAEAISDDTAAILSVHWSNFRIIGFTVQPELGELAELAHARGLLLIEDLGSGALLDTAAYGLAHEPTVQEAIAAGADLVCFSGDKLLGGPQAGIIVGRRELIEQVERHPLARALRADKTALAGTAVTLRHYLRGEAIDKIPVWRMIATPLAALEARCQTWQSALRDLVETEIVATDATVGGGSLPGETLPSRALALGAEAIAEVVPGLTVEELARRLRTGQPPVVGRVEADRLLLDARTVLPEQDEALVEALRRSLAIS
SIO_010081: TRD_RS01940
subclass of: SO_0000673
so part of: TRD_RS01940
location: 416518..417936
location: region:416518-417936:1
so has part: feature:416518-417936:1:exon

WP_012641826.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:416518-417936:1:exon

TRD_RS01945
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: dnaG
locus tag: TRD_RS01945
old locus tag: trd_0421
so part of: sequence
location: complement(417929..419779)
location: region:417929-419779:-1
so has part: feature:417929-419779:-1:exon
subclass of: SO_0000010

position:417929:-1
position: 417929
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:419779:-1
position: 419779
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:417929-419779:-1:exon

TRD_RS01945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: dnaG
locus tag: TRD_RS01945
old locus tag: trd_0421
inference: COORDINATES: protein motif:HMM:TIGR01391.1
GO function: GO:0003896 - DNA primase activity [Evidence IEA]
GO process: GO:0006269 - DNA replication, synthesis of RNA primer [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA primase
translation: MGRQDVERVREAIDIVDLIGGYIQLRKAGKNFKALCPFHQEKTPSFYVFPETQSFYCFGCGASGDAISFLMRIEQLDFRDALERLAERAGITLSPPRPEERAEDEQRRRLAELNRLAAAWFAHVLWGTSFGEAARSYLERRGIDRPTAERFGLGYAPDAPSALARYLSQHGAGPEELVTAGLVVRRDDGSLVDRFRNRLIFPIRDRHGTILGFGGRTLGEAQPKYLNSPQTPLFDKGSVLYAIDLAEESIRQQRTAIVVEGYLDAITAHQFGYSNTVASLGTALTERQGRHLRRLAERILLALDADVAGRQATLRGLELLRHALAEGERAVVDPRQLIRFERTLDVELAVVVLPEGLDPDDLIRQDRTRWDEALAHAVPLVDYYLDVLLGEQPPANPRAATALLQRIAPLLLELGDLVQVDLYTRSVAARLRLPEETVRRLLASLRRQPTREPSPKTTAAAILRPLSTEQQFVGLLLRYPEAAAHLVGEIDLESITDARYRELVSLLLAGQPLDDAALAEDLRDDIGQLRQRFATQPDLPVPLARQAIREAFRRLRRERHDERLRSLLSEVRDAEERGDRDELRRALELIEALKQRFPEFYPERSPYFRDTRDPVN
SIO_010081: TRD_RS01945
subclass of: SO_0000673
so part of: TRD_RS01945
location: complement(417929..419779)
location: region:417929-419779:-1
so has part: feature:417929-419779:-1:exon

WP_012641827.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:417929-419779:-1:exon

TRD_RS01950
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01950
old locus tag: trd_0423
so part of: sequence
location: complement(419784..420854)
location: region:419784-420854:-1
so has part: feature:419784-420854:-1:exon
subclass of: SO_0000010

position:419784:-1
position: 419784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:420854:-1
position: 420854
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:419784-420854:-1:exon

TRD_RS01950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01950
old locus tag: trd_0423
inference: COORDINATES: protein motif:HMM:NF002327.0
GO function: GO:0016793 - triphosphoric monoester hydrolase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: deoxyguanosinetriphosphate triphosphohydrolase
translation: MEETALPTIRFLLEEREAKWLHPRATSSRHAKRQQPEPECPFRTPYQRDRDRVIHSKAFRRLKHKTQVFIAPPGDHYRTRLTHTLEVTQIARTIGRALRLNEDLIEAIGLAHDLGHTPFGHTGERALAAVFPGFRHNEQSLRVVDRLERDGQGLNLTEQVRDGILRHSKTIESISSPIAGWPSTPEGQVVKISDGIAYINHDLDDALRAGMITLTDAPADVLDTLGRTHGERIHRLVADVVATSAPLLDECTPGQPVIRLSPEMERAANQLRRFLFERVYEPLNRLEETRKAERIIQFLFEHFVTHPDEMPATFRQMLENESVERIAADYVASMTDRYALACFEAIWLPRFWTFLG
SIO_010081: TRD_RS01950
subclass of: SO_0000673
so part of: TRD_RS01950
location: complement(419784..420854)
location: region:419784-420854:-1
so has part: feature:419784-420854:-1:exon

WP_041435914.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:419784-420854:-1:exon

TRD_RS01955
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01955
old locus tag: trd_0424
so part of: sequence
location: complement(420997..422406)
location: region:420997-422406:-1
so has part: feature:420997-422406:-1:exon
subclass of: SO_0000010

position:420997:-1
position: 420997
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:422406:-1
position: 422406
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:420997-422406:-1:exon

TRD_RS01955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01955
old locus tag: trd_0424
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012642279.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: aminomethyltransferase family protein
translation: MTSETPRTLQEVLERAPSVQELLYHNPTGARVYPVVPPEFTNWRDEQHAWRDTVCLFDLSYHMTDLFLRGPDAFALLRQLGINSFEGFQPGQAKQYVPVSPEGYVIGDVILFYLEDGTFQLVGRPSVHNWVQFHAATSGAAVSFERDEWSVTDPHKPRKTFRFQIQGPNAPMLLEKLLGGPPPDLPFFHFTRVSIAGKRVSLLHHGMSGVAGAEFFGDFADGPAVKAAILEAGKEFGIRHVGSRAYATNTLESGWIPNPLPAIYTSPALEAYRRWLPATAYEAIGSLGGSFVSPRIEDYYLTPWDLGYGRLIKFDHDFVGRAALERLKDQPHRKKVTLVWDPDEAARVISSLVTHPKGQRYKYFDLPLAQYATWMYDAVLNDAGEVVGFAMFTGFSSNEERVLSLATVRSEYAQEGTRLRVVWGEPNGGSRKPSVERHVQTEVWVTVGPAPYAEPARRYREQVARARRS
SIO_010081: TRD_RS01955
subclass of: SO_0000673
so part of: TRD_RS01955
location: complement(420997..422406)
location: region:420997-422406:-1
so has part: feature:420997-422406:-1:exon

WP_012641829.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:420997-422406:-1:exon

TRD_RS14805
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS14805
old locus tag: trd_0426
so part of: sequence
location: 422860..423045
location: region:422860-423045:1
so has part: feature:422860-423045:1:exon
subclass of: SO_0000010

position:422860:1
position: 422860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:423045:1
position: 423045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:422860-423045:1:exon

TRD_RS14805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS14805
old locus tag: trd_0426
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MHGVRWNLSPPWGLEQVIRGETQYYKRQAVRDGEENAFEKRRDDRRKRKFRHFLEEFLEFD
SIO_010081: TRD_RS14805
subclass of: SO_0000673
so part of: TRD_RS14805
location: 422860..423045
location: region:422860-423045:1
so has part: feature:422860-423045:1:exon

WP_169302271.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:422860-423045:1:exon

TRD_RS01965
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: uvrC
locus tag: TRD_RS01965
old locus tag: trd_0427
so part of: sequence
location: 423066..424919
location: region:423066-424919:1
so has part: feature:423066-424919:1:exon
subclass of: SO_0000010

position:423066:1
position: 423066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:424919:1
position: 424919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:423066-424919:1:exon

TRD_RS01965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: uvrC
locus tag: TRD_RS01965
old locus tag: trd_0427
EC number: 3.1.25.-
inference: COORDINATES: protein motif:HMM:NF001824.0
GO component: GO:0009380 - excinuclease repair complex [Evidence IEA]
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0009381 - excinuclease ABC activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO process: GO:0006289 - nucleotide-excision repair [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: excinuclease ABC subunit UvrC
translation: MRKTSEQVIQERLAALEPAPGVYLMKDAQGRVIYVGKASSLRQRLRSYFSSHSSMDAKTRELVSQIADFEVIRTDTPTEALILENELIKRYRPRFNIMLRDDKTYPFIRITNEPFPRVIATRRIVRDGSRYFGPYPSAGAVHRTLDLLKRLFPYRACDIEITGTASRACLYYHIGRCAGPCIGAVSQEEYRGIIDNVVLFLEGRAEAVVARLQAAMEEAAERLEFERAARIRDELRAIQHVLQQQKIVTGTDESFDVLAVAQSAGGDACVQIGFVRNGKLLGSEHYLMVGARIDDPPGAILTSFVQQYYAQASTVPPELVLQHPLDDGETIAAWLAARRDGPVRLTVPDDGFRRELVEMIAKSAVQNLEQHRVRWLNDEQRTTLALEELADALGMDRLPRRIECFDVSQLQGTNVVASMVVFEHGKPKKSDYRKFQIKTVEGQDDYAALREAVLRRYRRALSAEQTEAWQALPDLVLIDGGKGQLSAAREALVELGLDLPIAALAKEHEELYIPDQSEPIVLPRDSQALFLVQRVRDEAHRFAVTFHRARRTRSTIRSLLDEIPGIGPRRRRELLRRFGSVEGIRQASIEEIAAVPGISRALAERIKKELDEARAPR
SIO_010081: TRD_RS01965
subclass of: SO_0000673
so part of: TRD_RS01965
location: 423066..424919
location: region:423066-424919:1
so has part: feature:423066-424919:1:exon

WP_041436313.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:423066-424919:1:exon

TRD_RS01970
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01970
old locus tag: trd_0428
so part of: sequence
location: 424916..425545
location: region:424916-425545:1
so has part: feature:424916-425545:1:exon
subclass of: SO_0000010

position:424916:1
position: 424916
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:425545:1
position: 425545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:424916-425545:1:exon

TRD_RS01970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01970
old locus tag: trd_0428
EC number: 2.7.7.87
inference: COORDINATES: protein motif:HMM:TIGR00057.1
GO function: GO:0061710 - L-threonylcarbamoyladenylate synthase [Evidence IEA]
GO process: GO:0006400 - tRNA modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: L-threonylcarbamoyladenylate synthase
translation: MKVLRADEPGSVEIAAQVLREGGLVVFPTDTVYGVGAVVDRPDAVARLYVAKGRPLDKPIPVLIADLDQLEKLAREVTPEVQLLAQHFWPGALTIVVPAQPWLPREIVRETGAVGLRMPDHPVALGIISGAGGAVATTSANRSGEREACTVEEAIGALGDAVDLYIDGGRTPGGIPSTVVAFEGSRLVVLRRGALPVEVIEEVLRSRSH
SIO_010081: TRD_RS01970
subclass of: SO_0000673
so part of: TRD_RS01970
location: 424916..425545
location: region:424916-425545:1
so has part: feature:424916-425545:1:exon

WP_012641833.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:424916-425545:1:exon

TRD_RS01975
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01975
old locus tag: trd_0429
so part of: sequence
location: 425631..426896
location: region:425631-426896:1
so has part: feature:425631-426896:1:exon
subclass of: SO_0000010

position:425631:1
position: 425631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:426896:1
position: 426896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:425631-426896:1:exon

TRD_RS01975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01975
old locus tag: trd_0429
EC number: 2.4.-.-
inference: COORDINATES: protein motif:HMM:NF018613.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycosyltransferase
translation: MVLSEWLLVGVASTFAAAGGVAQRQQRLRHLQRVTRSLSFPDGAPRVLILSASIGGGHNAAAAVLRHDLERLGSHACILDGFALATPLLSRCFASAYPLQLRYTPWLYELQFRSSHLRTWTRMWRRIYAGLGGVAFRRLIEELHPDVVVSTYPLVTQALGVLRSTGRLLTPVAATVTDYGVHRLWIAPGVDLHLVPSRVSAEQVEDATGEVRVMQPLVREAFRQSRNRAAVRQRYGFAADDFVALVVAGAWGIGHVELIVRDVVECGVRVVVVCGKNQELAEQLRREYAGCSTVQVWGWTDQLPELMTAADCLIQNAGGLTCLEAIACGLPVLMYRPIAGHGVFNAAAMERAGAARWIRSADELRMVLRGAAAGRIQLPVPKIDEDAVPAAEAILTLVAGRGARIGTGRTFAAQLVRSGSS
SIO_010081: TRD_RS01975
subclass of: SO_0000673
so part of: TRD_RS01975
location: 425631..426896
location: region:425631-426896:1
so has part: feature:425631-426896:1:exon

WP_012641834.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:425631-426896:1:exon

TRD_RS01980
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01980
old locus tag: trd_0430
so part of: sequence
location: 426893..427753
location: region:426893-427753:1
so has part: feature:426893-427753:1:exon
subclass of: SO_0000010

position:426893:1
position: 426893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:427753:1
position: 427753
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:426893-427753:1:exon

TRD_RS01980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01980
old locus tag: trd_0430
inference: COORDINATES: protein motif:HMM:NF040134.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIATRALATRIILASLLGAAMLAALAVLAVKTQPPVGLVPLIAREGRSFWLAGLAVCLLGALIFQVVDRLPELARATALQRGVRYDPVPEWPTAWILPFVTLASGTLLLCAYHSLIVALAVTLFGFISLVIGQFARLALYSAEERIRSLGRLVHTLLLYGVGFVSYAMIYVHKLRSLYSATAIFLLAVLLLLQLTEGADVQLDRRVLYAMTGALVLAEATWVLNYWPATGWLGGAVLLAVFHVLAGLTLARVERALSWRTIAEYGIMASLAIIVIVWGTIRTRGGP
SIO_010081: TRD_RS01980
subclass of: SO_0000673
so part of: TRD_RS01980
location: 426893..427753
location: region:426893-427753:1
so has part: feature:426893-427753:1:exon

WP_012641835.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:426893-427753:1:exon

TRD_RS01985
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01985
old locus tag: trd_0431
so part of: sequence
location: 427750..428031
location: region:427750-428031:1
so has part: feature:427750-428031:1:exon
subclass of: SO_0000010

position:427750:1
position: 427750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:428031:1
position: 428031
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:427750-428031:1:exon

TRD_RS01985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01985
old locus tag: trd_0431
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSEPEQHELYQLLLAMDVLEELLEDLEESGLTSLEDLASRLASDAEATDLLELIAQLIARGIRTSEDLAGFLSELEQRIEEPEVMDSDWVNPN
SIO_010081: TRD_RS01985
subclass of: SO_0000673
so part of: TRD_RS01985
location: 427750..428031
location: region:427750-428031:1
so has part: feature:427750-428031:1:exon

WP_012641836.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:427750-428031:1:exon

TRD_RS01990
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS01990
old locus tag: trd_0432
so part of: sequence
location: 428047..429399
location: region:428047-429399:1
so has part: feature:428047-429399:1:exon
subclass of: SO_0000010

position:428047:1
position: 428047
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:429399:1
position: 429399
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:428047-429399:1:exon

TRD_RS01990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS01990
old locus tag: trd_0432
inference: COORDINATES: protein motif:HMM:NF023428.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication-associated recombination protein A
translation: MENLFESHRRSLRERCAPLAERMRPRTLDEVVGQEHVLGPGALLRSLIERDQLVSLILWGPPGCGKTTLARLIAKHTRSAFVPLSAVSASVADIRRVVQEASDRFAQHGQRTIVFIDEIHRFNRAQQDALLPAVEDGTIVLIGATTENPSFEINAPLLSRCRVVVLEPLSDQAIQTLVERALVDRERGLGELGLRIEPEALRLLVGLANGDARMALNTLEVAAAGAQEGTITVELVHQAAMRRGSVYDRAGDAHYDTISALHKAIRGSDPDAALYWLARMLEHGDDPLYVARRLVRAASEDIGLADPHALVVAVAAQQAVHFLGMPEGALALAEATVYLALAPKSNAVYRAYEAARRDVVQTRNEPVPLHLRNAPTTLLRQLGWGVGYRYPHDEPDGIGRQDYFPPLLRGRRYYEPSDRGWEVRLRERLAAIRAARGQRAGPTESGGGSG
SIO_010081: TRD_RS01990
subclass of: SO_0000673
so part of: TRD_RS01990
location: 428047..429399
location: region:428047-429399:1
so has part: feature:428047-429399:1:exon

WP_012641837.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:428047-429399:1:exon

TRD_RS01995
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: rph
locus tag: TRD_RS01995
old locus tag: trd_0433
so part of: sequence
location: 429396..430127
location: region:429396-430127:1
so has part: feature:429396-430127:1:exon
subclass of: SO_0000010

position:429396:1
position: 429396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:430127:1
position: 430127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:429396-430127:1:exon

TRD_RS01995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: rph
locus tag: TRD_RS01995
old locus tag: trd_0433
inference: COORDINATES: protein motif:HMM:TIGR01966.1
GO function: GO:0004549 - tRNA-specific ribonuclease activity [Evidence IEA]
GO process: GO:0008033 - tRNA processing [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribonuclease PH
translation: MNELAIPVRHGRANDELRPVEIVPHYIPYAEGSALIMLGNTHVLCAATVEERVPSFLVGSGQGWITAEYGMLPRSGRERIPRERMGPGGRTAEIQRLIGRSLRAAVDLAALGERTIIIDCDVLRADGGTRTAAITGGWVALHLALQHLLAEGRIESLPVVRQVAAVSVGVVAGQPRLDLEYAEDSCAEVDMNIVMTDRGEFVELQGTAEGQPFGREVLEQLLRLAERGISELMLVQRRALGLS
SIO_010081: TRD_RS01995
subclass of: SO_0000673
so part of: TRD_RS01995
location: 429396..430127
location: region:429396-430127:1
so has part: feature:429396-430127:1:exon

WP_012641838.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:429396-430127:1:exon

TRD_RS02000
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: hisB
locus tag: TRD_RS02000
old locus tag: trd_0434
so part of: sequence
location: complement(430134..430742)
location: region:430134-430742:-1
so has part: feature:430134-430742:-1:exon
subclass of: SO_0000010

position:430134:-1
position: 430134
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:430742:-1
position: 430742
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:430134-430742:-1:exon

TRD_RS02000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: hisB
locus tag: TRD_RS02000
old locus tag: trd_0434
EC number: 4.2.1.19
inference: COORDINATES: protein motif:HMM:NF002111.0
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: imidazoleglycerol-phosphate dehydratase HisB
translation: MTEIRRASIRRTTTETDVSVDLIIDGTGRSSVATGIGALDHFLTLFARHGRFDIDIQARGDLHVDAHHTVEDVALCLGQALRRALGDWRGIRRMADAAVPMDEALAQVAVDLSGRGSFHYRDPWPGGAVGQLEADLVRHFLETLAREARITIHVVTLYGSNVHHQIEAIFKALARALDAATELDTRIAGQLPSTKEHLEIQG
SIO_010081: TRD_RS02000
subclass of: SO_0000673
so part of: TRD_RS02000
location: complement(430134..430742)
location: region:430134-430742:-1
so has part: feature:430134-430742:-1:exon

WP_012641839.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:430134-430742:-1:exon

TRD_RS02005
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: hisC
locus tag: TRD_RS02005
old locus tag: trd_0435
so part of: sequence
location: complement(430766..431848)
location: region:430766-431848:-1
so has part: feature:430766-431848:-1:exon
subclass of: SO_0000010

position:430766:-1
position: 430766
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:431848:-1
position: 431848
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:430766-431848:-1:exon

TRD_RS02005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: hisC
locus tag: TRD_RS02005
old locus tag: trd_0435
EC number: 2.6.1.9
inference: COORDINATES: protein motif:HMM:TIGR01141.1
GO function: GO:0004400 - histidinol-phosphate transaminase activity [Evidence IEA]
GO process: GO:0000105 - histidine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: histidinol-phosphate transaminase
translation: MAARRAVRASIENAVEYLPVESRETIAERLGVPPEQVAKLDANENPYGPPPAVIAALASLPDLHLYPDPDQRRARAALADYTGMPAERILLGNGSDELIDLLLLVTIEPGDEVVVPVPSFGVYLSRPPLFGARVITVPRREDFDLDLETIEDAITPRTKLLFLASPNNPTGNLVTPQQLSRLLRTGILVVLDEAYYEFAGQTLAPFAREFENLVILRTFSKWAGLAGLRIGYGIFPPHLAAALWRVKQPFNVSTAAQAAVEAALADRTWLMQRVLHVRLERGRLYRALRRYPFLTPYPSHGNFILCRVHDGRAHQLHAHLLQHAIVVRRYDDEWLRDYLRITVGTPEQTDRILAALDTFR
SIO_010081: TRD_RS02005
subclass of: SO_0000673
so part of: TRD_RS02005
location: complement(430766..431848)
location: region:430766-431848:-1
so has part: feature:430766-431848:-1:exon

WP_012641840.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:430766-431848:-1:exon

TRD_RS13465
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS13465
old locus tag: trd_0436
so part of: sequence
location: 431933..433027
location: region:431933-433027:1
so has part: feature:431933-433027:1:exon
subclass of: SO_0000010

position:431933:1
position: 431933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:433027:1
position: 433027
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:431933-433027:1:exon

TRD_RS13465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS13465
old locus tag: trd_0436
inference: COORDINATES: protein motif:HMM:NF012970.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: serine hydrolase
translation: MASVLMLALLGTTTRAVAVVPEVSSRPAPSSAYQPAERPTLTARASFAVDITAGVELWAQEADRPLPPASTTKLMTALVVRRWLRPDESITIRSDDLVDPAVYANAGFQPGDRVTVTDLLAAMLIASAGDAALALARVAGERIDPEHDVPRTAFIDAMNQEAARLGLRHSWFATPDGRDVPGQTVSARDLAIIAAAVLSDPLLAELVATRTREIEIAGPQSRRITVVNTNQFLTEPDALGVKTGTSVAAGQCLVAAVRRGNDIVVLVLLSSRDRYADARALLTYLDRQYRWFTLDGRSFAELARLAREGIVPALVPTVVVANETADQVRVIIDRQHSSADVVGTVRLRIGTSDLFIVPLLRVER
SIO_010081: TRD_RS13465
subclass of: SO_0000673
so part of: TRD_RS13465
location: 431933..433027
location: region:431933-433027:1
so has part: feature:431933-433027:1:exon

WP_012641841.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:431933-433027:1:exon

TRD_RS02015
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02015
old locus tag: trd_0437
so part of: sequence
location: 433028..433876
location: region:433028-433876:1
so has part: feature:433028-433876:1:exon
subclass of: SO_0000010

position:433028:1
position: 433028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:433876:1
position: 433876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:433028-433876:1:exon

TRD_RS02015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02015
old locus tag: trd_0437
EC number: 5.4.99.-
inference: COORDINATES: protein motif:HMM:TIGR00093.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: pseudouridine synthase
translation: MSVTMTEQRLQRVLAAHGVASRRKAEELILAGRVTVDGVVVRELGRKVDPERQEICVDGKPLHSEPRRYIVLHKPVGYITTTADEYGRKTVLDLVQVPERVVPVGRLDRDSSGLLLLTNDGDLIYRITHPRYELEKEYEVLVDGFPPPEVEEALRRGVPVDGRPVRIRRLEAIRVEPQGTVYRVVIHEGRNRIIRRVFERVGYPVLRLQRVRVGPLRLGDLPPGRWRDLTASEVAALRRAVGLPEFPEGAVGRERKARGGRGMPARRGDRRPSGVRKEHRRR
SIO_010081: TRD_RS02015
subclass of: SO_0000673
so part of: TRD_RS02015
location: 433028..433876
location: region:433028-433876:1
so has part: feature:433028-433876:1:exon

WP_012641842.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:433028-433876:1:exon

TRD_RS02020
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: cmk
locus tag: TRD_RS02020
old locus tag: trd_0438
so part of: sequence
location: 433800..434546
location: region:433800-434546:1
so has part: feature:433800-434546:1:exon
subclass of: SO_0000010

position:433800:1
position: 433800
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:434546:1
position: 434546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:433800-434546:1:exon

TRD_RS02020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: cmk
locus tag: TRD_RS02020
old locus tag: trd_0438
EC number: 2.7.4.25
inference: COORDINATES: protein motif:HMM:NF014300.2
GO function: GO:0004127 - cytidylate kinase activity [Evidence IEA]
GO process: GO:0015949 - nucleobase-containing small molecule interconversion [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: (d)CMP kinase
translation: MVAGACQLVVAIDGPAGSGKSTVGAEVAKRLGALYFDTGVVYRVLALLALERGIAPDDAERLAQLAQNLSIRVGPPSIQDGRLYDVWLDGRDVTWAIRTPEIDRLASLVSAHPPVRRALLRLQRELARNGRVVIAGRDIGTVVMPEAPVKIWLHASLEERARRRQRDLARRGIVRSLEEIVAELADRDRRDATRAIAPMRPAEDAVIIDTDDRTIEEVVETVLAVVRERCECANHGSDSAGVAPLAAP
SIO_010081: TRD_RS02020
subclass of: SO_0000673
so part of: TRD_RS02020
location: 433800..434546
location: region:433800-434546:1
so has part: feature:433800-434546:1:exon

WP_012641843.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:433800-434546:1:exon

TRD_RS02025
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02025
old locus tag: trd_0439
so part of: sequence
location: 434503..435264
location: region:434503-435264:1
so has part: feature:434503-435264:1:exon
subclass of: SO_0000010

position:434503:1
position: 434503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:435264:1
position: 435264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:434503-435264:1:exon

TRD_RS02025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02025
old locus tag: trd_0439
inference: COORDINATES: protein motif:HMM:NF013702.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: lysophospholipid acyltransferase family protein
translation: MDRIPPEWRLSRRRKIKTWIFLTARVFVVPLLRLLIRFRIEGLEHVPRVGPALVAANHLHNADPVLIIAAFPRPVLFMAKRELFGVPVIRWFVRQSGAFPVDRGRPDRQALRHAERLLHEGMLVGIFPEGTRSVTGTLQPPHPGVGLLIRRNPSVPVLPVAIWGTEVLPFNGAKGRRPLRGWPRVTVRIGPPVTIALQAPEGRERSPEELADEVMLAIARLLPDQYRGVYRERLVREPSSLVGVPTGDPGRVG
SIO_010081: TRD_RS02025
subclass of: SO_0000673
so part of: TRD_RS02025
location: 434503..435264
location: region:434503-435264:1
so has part: feature:434503-435264:1:exon

WP_012641844.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:434503-435264:1:exon

TRD_RS02030
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02030
old locus tag: trd_0440
so part of: sequence
location: complement(435753..436961)
location: region:435753-436961:-1
so has part: feature:435753-436961:-1:exon
subclass of: SO_0000010

position:435753:-1
position: 435753
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:436961:-1
position: 436961
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:435753-436961:-1:exon

TRD_RS02030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02030
old locus tag: trd_0440
inference: COORDINATES: protein motif:HMM:NF015948.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF362 domain-containing protein
translation: MADFPGKGKVAVLRTTPETVLADIGRAMLMAGYREALPRDRETILKINITWDTWYPGCSTTPWQLEGVIRRLKADGYGHLIAAHNRTVVVDAYKGERNNKHKYVVDKYGVENVHLYEPHVEWVPYEPKSELLVLHKIFPEGIRIPKLFIGRNIIHLPTVKTHVFTTITGAMKNAFGGLLNERRHWTHAVIHETLVDLLTIQQEIHPGIFAVMDGTFAGDGPGPRAMRPHEKDIILASADQVAIDAISAKLQGFDPLSIPFIRIAHERGLGIGDPRKIEVIGEDISNESWGFVAGDTFASRGQKLIYHGPLKPLENLLLRSPLVPWSYVASNVYHNVYWYPVHGRRRVKEALQTKWGQLFLSYDDGKVVLPGPDPLGTAIVVGGLAALVAGTISVARWLRRDH
SIO_010081: TRD_RS02030
subclass of: SO_0000673
so part of: TRD_RS02030
location: complement(435753..436961)
location: region:435753-436961:-1
so has part: feature:435753-436961:-1:exon

WP_012641845.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:435753-436961:-1:exon

TRD_RS13470
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS13470
old locus tag: trd_0441
so part of: sequence
location: 437118..438695
location: region:437118-438695:1
so has part: feature:437118-438695:1:exon
subclass of: SO_0000010

position:437118:1
position: 437118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:438695:1
position: 438695
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:437118-438695:1:exon

TRD_RS13470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS13470
old locus tag: trd_0441
EC number: 3.4.-.-
inference: COORDINATES: protein motif:HMM:NF012970.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: D-alanyl-D-alanine carboxypeptidase family protein
translation: MARVWFCLAVILSGWFAAPAGAVQAETETPSIVAAAAIAIEAESGRVLYAKEPDAPRAPASLTKLATALTAVELAPRDTVLTVQAQDLVGESSMGLRPGEQITLEAALYGLLLASGNDAAMTIARNLSGLPGDTPEAAVNRFVKQMNLLAQRLGLERTTFRNPHGLDQEGHVTTARDLALLTRAVLQRPELRRILQTPSYDDGVHAVQTTNRLLGRYPGLIGGKTGITEAAGYSLIEAAERDGTTVIVVVLGSTRDAWYADAVQLLDYAFAQLAPAPAAGLAGSAAEASARDISASRPIGDAAMTVGGPRALILEAPTPLPASNELWFWPASAVTTAVAAGVLASGFPAIMAVVIARRRAGRRATLDRGQRRGRRPGPHSVRPARVRTDRRRSAVLPARDEGTQDASGRIVPFDPAVHVAQRAVRAARRGDIAVAEHEFLHALRLNPNFDLTRAPEFWTLSPAGVIAAAQAYRRVGRLRDARTLLTVARLSFGDLPAIRTALAELSAATNSPQLVIGRFSQRFET
SIO_010081: TRD_RS13470
subclass of: SO_0000673
so part of: TRD_RS13470
location: 437118..438695
location: region:437118-438695:1
so has part: feature:437118-438695:1:exon

WP_169302277.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:437118-438695:1:exon

TRD_RS02040
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02040
old locus tag: trd_0442
so part of: sequence
location: 438760..439116
location: region:438760-439116:1
so has part: feature:438760-439116:1:exon
subclass of: SO_0000010

position:438760:1
position: 438760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:439116:1
position: 439116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:438760-439116:1:exon

TRD_RS02040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02040
old locus tag: trd_0442
inference: COORDINATES: protein motif:HMM:NF024803.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MerR family transcriptional regulator
translation: MRRSEPLYVISVAARLLELHPQTLRKYEREGFVTPSRTRGNLRLYSAEDLERLRQVKYLVEERGVNLAGVQLALALTEQLQRLRERCLAISEQYDRVFDSVVAEIDSMLQLLGSTPES
SIO_010081: TRD_RS02040
subclass of: SO_0000673
so part of: TRD_RS02040
location: 438760..439116
location: region:438760-439116:1
so has part: feature:438760-439116:1:exon

WP_012641847.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:438760-439116:1:exon

TRD_RS02045
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: clpB
locus tag: TRD_RS02045
old locus tag: trd_0443
so part of: sequence
location: 439167..441779
location: region:439167-441779:1
so has part: feature:439167-441779:1:exon
subclass of: SO_0000010

position:439167:1
position: 439167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:441779:1
position: 441779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:439167-441779:1:exon

TRD_RS02045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: clpB
locus tag: TRD_RS02045
old locus tag: trd_0443
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016636114.1
GO function: GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO process: GO:0006457 - protein folding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-dependent chaperone ClpB
translation: MGRPQFTEKAQEALVTAQRTAAERQNSQLDVEHLLYALVTQHDGVVPQVLLRLQLDPRRVAQELERVLETLPRLQYAAEPTISPVLRRVLERAQSEAQSFGDQYISTEHLLLAALDAAPRSPAVQALARLGVQRERVLEALSQIRGAQRVTSPNPESTYQALERYGRDLTALARQGKLDPVIGRDDEIRRVIQVLLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVRGDVPEGLRDKRIVQLDLAAMLAGAKYRGEFEERLKAVLDEIRASEGEIIVFIDEVHTVVGAGAAEGAMDAANMLKPMLARGELHAIGATTLDEYRKHIEKDPALERRFQPVFVDEPSVEDTISILRGLRERYELHHKVRILDSALVAAAVLSHRYITNRFLPDKAIDLVDEAAARLRMEITSMPAELDELTRRITQLEIEREALRKERDEASRQRLAELERELANLREQEQVLRSQWEQERQALERINALKEQIEQTRIEIEQALRAADYTRASELQYGRLVELERQLREEERRLADVQRQGRLLKEEVDADDIAEIVSKWTGIPVAKLMEGEMEKLVHMEERLHERVVGQDEAVRAVSNAIRRARAGLQDPNRPLGSFIFLGPTGVGKTELARALAEFLFDDERAMVRIDMSEYQERHTVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVVLFDEIEKAHPEVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSEYIQALLPHREEEAYERVMQAVRAHFRPEFLNRIDEIIMFRPLTREQLSQIVDIQLRQVRQRLKQRNITLQVTLRAKEWLAERGYDPVYGARPLKRVIQRELLDPLANMLLRGEVRDGETVLVDVDEHGNLSIRSMLAEAEVVA
SIO_010081: TRD_RS02045
subclass of: SO_0000673
so part of: TRD_RS02045
location: 439167..441779
location: region:439167-441779:1
so has part: feature:439167-441779:1:exon

WP_012641848.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:439167-441779:1:exon

TRD_RS15205
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS15205
old locus tag: trd_0444
so part of: sequence
location: 441842..441970
location: region:441842-441970:1
so has part: feature:441842-441970:1:exon
subclass of: SO_0000010

position:441842:1
position: 441842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:441970:1
position: 441970
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:441842-441970:1:exon

TRD_RS15205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS15205
old locus tag: trd_0444
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDAVAEIAKLIVIAALIVFVPFLFMLIFDLAAHLGELFGRRS
SIO_010081: TRD_RS15205
subclass of: SO_0000673
so part of: TRD_RS15205
location: 441842..441970
location: region:441842-441970:1
so has part: feature:441842-441970:1:exon

WP_012641849.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:441842-441970:1:exon

TRD_RS02050
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02050
old locus tag: trd_0445
so part of: sequence
location: 441988..442212
location: region:441988-442212:1
so has part: feature:441988-442212:1:exon
subclass of: SO_0000010

position:441988:1
position: 441988
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:442212:1
position: 442212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:441988-442212:1:exon

TRD_RS02050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02050
old locus tag: trd_0445
inference: COORDINATES: protein motif:HMM:NF022596.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2905 domain-containing protein
translation: MESLQAFGRLLIVMGLLLAILGVLLVLAGRIPFIGRLPGDIVYQRGNFTLYIPLMSMLILSLLLTILLNLLFRR
SIO_010081: TRD_RS02050
subclass of: SO_0000673
so part of: TRD_RS02050
location: 441988..442212
location: region:441988-442212:1
so has part: feature:441988-442212:1:exon

WP_012641850.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:441988-442212:1:exon

TRD_RS02055
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02055
old locus tag: trd_0446
so part of: sequence
location: 442267..443244
location: region:442267-443244:1
so has part: feature:442267-443244:1:exon
subclass of: SO_0000010

position:442267:1
position: 442267
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:443244:1
position: 443244
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:442267-443244:1:exon

TRD_RS02055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02055
old locus tag: trd_0446
inference: COORDINATES: protein motif:HMM:NF025616.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF4349 domain-containing protein
translation: MRLRAAFEWLLAAFVGLVALFLGIQGLSRSRWRLDTGQHFRRTGEPEDEDDDRAFARAPFLSESSRERLLYFLPAERPLEPREAPEMLEHTRAIRYEARVRLLVTDVDAVAVRIQEFAASVGGYTIDADVSSGTCSPSGRITVAVPAAQLSAFLDQLASFPGVRAVEERSLRGQDVTGEVIDVEARLRAARTAEQRYLSLVERAERVQDVLRVEEELRRIRAEIERLESQQRFLQERVSFAVVTVALRSARSLGQRVESAFRAGWDRGIGVMVDLANLGGRLAALGSVIVPAGVVLVAFLRWFVSRLVMERQGVSSDRISEQPRD
SIO_010081: TRD_RS02055
subclass of: SO_0000673
so part of: TRD_RS02055
location: 442267..443244
location: region:442267-443244:1
so has part: feature:442267-443244:1:exon

WP_012641851.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:442267-443244:1:exon

TRD_RS02060
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02060
old locus tag: trd_0447
so part of: sequence
location: complement(443334..444425)
location: region:443334-444425:-1
so has part: feature:443334-444425:-1:exon
subclass of: SO_0000010

position:443334:-1
position: 443334
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:444425:-1
position: 444425
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:443334-444425:-1:exon

TRD_RS02060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02060
old locus tag: trd_0447
inference: COORDINATES: protein motif:HMM:NF013847.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cobalamin-independent methionine synthase II family protein
translation: MYYRSDVVGSLLRPAYLIEARQQYEAGQLSAAEFKRLEDRAVDEAIQLQEEVGLEVVTDGEQRRYAFFGHLVEAIEGFDKFGGWAIPFRDEEGRENLVRRPIVVEKLRWKRNMCAEEFTYLRARTNRVGKVTLVSTMQAAVYWDKNKSTSAYPTIDSYLADIVDITRREIEELIRLGCTYIQIDAPQYAALLDPKIREGYRIRGIDPDRIVDQTIELDNAVLDGFDKQGIVFGLHICRGNNQSMFYASGGYDPIAEKVFRKTKFHRFLLEYDDERSGTFEPLRFVPEDRIVVLGLVTTKKMRLESQEELIQRIKEAAKYVPLERLALSPQCGFASTWEGNRITPEVQRQKLELVARTARLVWG
SIO_010081: TRD_RS02060
subclass of: SO_0000673
so part of: TRD_RS02060
location: complement(443334..444425)
location: region:443334-444425:-1
so has part: feature:443334-444425:-1:exon

WP_012641852.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:443334-444425:-1:exon

TRD_RS02065
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02065
old locus tag: trd_0448
so part of: sequence
location: 444837..445871
location: region:444837-445871:1
so has part: feature:444837-445871:1:exon
subclass of: SO_0000010

position:444837:1
position: 444837
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:445871:1
position: 445871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:444837-445871:1:exon

TRD_RS02065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02065
old locus tag: trd_0448
EC number: 1.1.99.36
inference: COORDINATES: protein motif:HMM:TIGR03989.1
GO function: GO:0051287 - NAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NDMA-dependent alcohol dehydrogenase
translation: MKVLVKLVATGLCHSDWHFAKGEAPVRFPMVVGHEGAGIVEKVGPGVSEVQPGDHVVLCYIPACGKCRWCLSGLAAICDRGILIGQGTQLDGTFRLHNQRGEDVAQFALVSAFSEYTVCPVDSVIKIDPDLPLDRACLVGCAVPTGWGAAVNRARVRPGETVAIFGTGGVGMNAVQGAAMAGAEKVIAIDLVDWKLEKAKEFGATHTINPTREDPVQRVLDITHGVGADVVLLTVSLVTADIIGQGVRATRKAGRTVIVGASDRRMDRMNITPYDFMLLAKEIVGTIFGHNVPRVDIPRLLELYRDGKLKLDELVTKRYRLDEINQAFLDLEEGRLLRGVLVFD
SIO_010081: TRD_RS02065
subclass of: SO_0000673
so part of: TRD_RS02065
location: 444837..445871
location: region:444837-445871:1
so has part: feature:444837-445871:1:exon

WP_012641853.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:444837-445871:1:exon

TRD_RS02070
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: aroF
locus tag: TRD_RS02070
old locus tag: trd_0449
so part of: sequence
location: 446227..447270
location: region:446227-447270:1
so has part: feature:446227-447270:1:exon
subclass of: SO_0000010

position:446227:1
position: 446227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:447270:1
position: 447270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:446227-447270:1:exon

TRD_RS02070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: aroF
locus tag: TRD_RS02070
old locus tag: trd_0449
EC number: 2.5.1.54
inference: COORDINATES: protein motif:HMM:NF006421.0
GO function: GO:0003849 - 3-deoxy-7-phosphoheptulonate synthase activity [Evidence IEA]
GO process: GO:0009423 - chorismate biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 3-deoxy-7-phosphoheptulonate synthase
translation: MGREDRAMIVRLRPETDEQESEALAAALRRAGLDVTLLTLGGTPLLSVNGRAVPPEVEQELLRHPAVEKLLRPDRPYCLAARSSRPDGTVVRVGPVEIGAKQPVIIAGPCTVENRDQLLRIAEAVRDAGASMLRGGAFKPRTSPYSFQGLGERGLELLAEAREETGLPIVTEVLDTEQVELVARYADMLQIGSRNMMNFALLRKVAATGKPVLLKRGFAATIEEWLLAAEYLLAGGNDQVVLCERGVRSFEPATRFMLDLNAVPLVRQLSHLPIIVDPSHGTGLRELVPPMSFAAIAAGAHGIIVEVHTSPEAALVDGRQSIDPTTLASIVRRVRMLRDMVEELVAV
SIO_010081: TRD_RS02070
subclass of: SO_0000673
so part of: TRD_RS02070
location: 446227..447270
location: region:446227-447270:1
so has part: feature:446227-447270:1:exon

WP_012641854.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:446227-447270:1:exon

TRD_RS02075
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02075
old locus tag: trd_0450
so part of: sequence
location: complement(447272..448252)
location: region:447272-448252:-1
so has part: feature:447272-448252:-1:exon
subclass of: SO_0000010

position:447272:-1
position: 447272
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:448252:-1
position: 448252
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:447272-448252:-1:exon

TRD_RS02075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02075
old locus tag: trd_0450
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSAQSSPLWPLLERALAQLYPGRRVRLVRMSAQPHVHRGFWHLEAHLSPTHEQLAFAVLVLDREGTDRAAPERYAAVAANALPAPVLLATAADPDRLVLLFQVPQGTNLDDELRRAAAPWRVSAAAISLARFFARLHSTPVHAFEPITTLQPASPTDEQRLSQLAAMAHDFDDPLRSSVERALDWIDQELDHSPALVPTVGCLRLPTLYEDSGEIATAFCWEHLALRPAAVDLACLLPELRFLPAEGRAHFLAVCLAAYADVAPVAIDDVAPRALLDLIERVLIVQSARASAATTSRDRAPDQEAVAFLDRAMRAARDGLPALALL
SIO_010081: TRD_RS02075
subclass of: SO_0000673
so part of: TRD_RS02075
location: complement(447272..448252)
location: region:447272-448252:-1
so has part: feature:447272-448252:-1:exon

WP_012641855.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:447272-448252:-1:exon

TRD_RS02080
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02080
old locus tag: trd_0452
so part of: sequence
location: 448375..449580
location: region:448375-449580:1
so has part: feature:448375-449580:1:exon
subclass of: SO_0000010

position:448375:1
position: 448375
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:449580:1
position: 449580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:448375-449580:1:exon

TRD_RS02080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02080
old locus tag: trd_0452
EC number: 2.4.-.-
inference: COORDINATES: protein motif:HMM:NF024831.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycosyltransferase
translation: MRILVVSPVLPYPDRSGGAIRIAQLLRALAREHELTLLASKPARVDPEEARAALDPITLIPVSAGWVIGEGPTTAKRLWQARSLVSSRSALYWILAGPLLDALRRLDWQRFDIVQVEYSLLGLLPFPRSLPLVVDAHNLEYRVLERISQRSGWLRGLWVRRECQRVRREEITAWRQAALCLAVSRVDAEEMRRFAARRVAVIPNGVDVRQTPFLPLDAAEPDHIVFVGNLRYWPNVDGVLWFVRKVWPAVRARIPSARFSIVGYDPPSALGMLSAIEGVRLVGTVPAVTPWLARASVIVVPLLAGSGTRLKILEAFAAGRPVVTTSLGLEGIDAEPGRHVMVADDAASFASAVVDLLASSQRRAALAEAARRLVEQLYDWDRIGEQLRAVYRAFVGEERIG
SIO_010081: TRD_RS02080
subclass of: SO_0000673
so part of: TRD_RS02080
location: 448375..449580
location: region:448375-449580:1
so has part: feature:448375-449580:1:exon

WP_012641856.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:448375-449580:1:exon

TRD_RS02085
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02085
old locus tag: trd_0451
so part of: sequence
location: complement(449544..450350)
location: region:449544-450350:-1
so has part: feature:449544-450350:-1:exon
subclass of: SO_0000010

position:449544:-1
position: 449544
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:450350:-1
position: 450350
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:449544-450350:-1:exon

TRD_RS02085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02085
old locus tag: trd_0451
inference: COORDINATES: protein motif:HMM:NF016163.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF429 domain-containing protein
translation: MGIDFSAARDASRKIWLAFGNAVSDQLHIETLAPLETLADRPLANASAVLARIIASSGPSIIACDACFGLPVPSSAAPWHTWLLSYPSRFADAEQLRQEGRDAHGRERKRLTDRVARAPFAPTNLRIYRQTDSWLRSVLHPLVAADAVAVAPFERLREDRPCLLEVCPSVSLREFGLPNLRYKGSDHLRRQCRCDILTGLTRLGLDLPSSLASRALDDPGGDALDALIAAITAWLVVRQDLLACPLPAEAFIEGWIYYPILSSPTNAR
SIO_010081: TRD_RS02085
subclass of: SO_0000673
so part of: TRD_RS02085
location: complement(449544..450350)
location: region:449544-450350:-1
so has part: feature:449544-450350:-1:exon

WP_041435916.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:449544-450350:-1:exon

TRD_RS14810
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS14810
old locus tag: trd_0453
so part of: sequence
location: complement(450364..450756)
location: region:450364-450756:-1
so has part: feature:450364-450756:-1:exon
subclass of: SO_0000010

position:450364:-1
position: 450364
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:450756:-1
position: 450756
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:450364-450756:-1:exon

TRD_RS14810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS14810
old locus tag: trd_0453
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNQWEALASDFADRVAEMTGQHLDFTLASLAILDDLLDEWLHLSQVYGSERPDDLSRLVLPLVSYVGETLRHAYGGTWIERPSGPVLCIAQTIELDLRPLVQATLAQQHPPAFARLAAALDRELEDRLGE
SIO_010081: TRD_RS14810
subclass of: SO_0000673
so part of: TRD_RS14810
location: complement(450364..450756)
location: region:450364-450756:-1
so has part: feature:450364-450756:-1:exon

WP_012641858.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:450364-450756:-1:exon

TRD_RS02095
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02095
old locus tag: trd_0455
so part of: sequence
location: 451014..451928
location: region:451014-451928:1
so has part: feature:451014-451928:1:exon
subclass of: SO_0000010

position:451014:1
position: 451014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:451928:1
position: 451928
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:451014-451928:1:exon

TRD_RS02095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02095
old locus tag: trd_0455
inference: COORDINATES: protein motif:HMM:NF015297.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CoA ester lyase
translation: MHPERSVLSVPGGRPELFEKALRSDADLVFLDLEDSVVETAKAEARRNVVRAVNELDWRGRPRAVRINAVDSPYCYRDLMDLLEGAGNRIDLIIVPKVERPEQVHALDILLDQLEAAGGIGHRVQLEVQLETASGILHAGSIAGACERLRALVFGPGDYAASVGMPMSAIGMEDEWDAAYGAPRLQYPMHQLLVAARAYGLRAIDGPYADYRDNEGLRRAARRARALGYDGKWCIHPAQIPIVNEVFTPTEAEIAWAKEVLKAYHEAERQRRGALAIGSTMIDAASVRMAESTLSRARAAGRGF
SIO_010081: TRD_RS02095
subclass of: SO_0000673
so part of: TRD_RS02095
location: 451014..451928
location: region:451014-451928:1
so has part: feature:451014-451928:1:exon

WP_012641860.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:451014-451928:1:exon

TRD_RS02100
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02100
old locus tag: trd_0458
so part of: sequence
location: 452280..452738
location: region:452280-452738:1
so has part: feature:452280-452738:1:exon
subclass of: SO_0000010

position:452280:1
position: 452280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:452738:1
position: 452738
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:452280-452738:1:exon

TRD_RS02100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02100
old locus tag: trd_0458
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSFDLWLWLLVLVSALLLVTIELTEDYLEQGWPRIRRPADGWASSDSVHLLWTAVGMLVFPGIVLLLMNLAVIVWRELGMTLVLLLGSILLAFGWAAYLLLISQIGGVDQYLESIGITLPLAIVAVLLVGDLLLLVSLISVLPDVSLRGIVP
SIO_010081: TRD_RS02100
subclass of: SO_0000673
so part of: TRD_RS02100
location: 452280..452738
location: region:452280-452738:1
so has part: feature:452280-452738:1:exon

WP_012641862.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:452280-452738:1:exon

TRD_RS02105
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02105
old locus tag: trd_0457
so part of: sequence
location: complement(452695..453408)
location: region:452695-453408:-1
so has part: feature:452695-453408:-1:exon
subclass of: SO_0000010

position:452695:-1
position: 452695
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:453408:-1
position: 453408
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:452695-453408:-1:exon

TRD_RS02105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02105
old locus tag: trd_0457
inference: COORDINATES: protein motif:HMM:NF003992.0
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: redox-sensing transcriptional repressor Rex
translation: MRNGPVPDIVVRRLPLYLRTLRQLQREGHRTISSEELAQLLGVTAAQIRRDLSYFGRFGKQGYGYAVAALIHELEVILHLDRLWNVALVGYGKLGQAIAHYGEFEPNGFRITAIFAKSPEHIGQIVNGIVVLPETEIDRVVREQGIRIGIIAVPPDAAQEVADKLVAGGVRAILNYAPTVLHVPPGITVREIDPISALQSMTFYLHDRHDASGNGQDEQSFADIMERSPVGKRPAAH
SIO_010081: TRD_RS02105
subclass of: SO_0000673
so part of: TRD_RS02105
location: complement(452695..453408)
location: region:452695-453408:-1
so has part: feature:452695-453408:-1:exon

WP_012641863.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:452695-453408:-1:exon

TRD_RS02110
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02110
old locus tag: trd_0459
so part of: sequence
location: complement(453510..455258)
location: region:453510-455258:-1
so has part: feature:453510-455258:-1:exon
subclass of: SO_0000010

position:453510:-1
position: 453510
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:455258:-1
position: 455258
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:453510-455258:-1:exon

TRD_RS02110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02110
old locus tag: trd_0459
EC number: 6.3.5.1
inference: COORDINATES: protein motif:HMM:NF010588.0
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0003952 - NAD+ synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO process: GO:0009435 - NAD biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NAD+ synthase
translation: MTRDTWRIALAQIDPTVGDFSGNVRLIRERAREAAQLGAHIVAFPELVITGYPPEDLLLKVSFIDAARRALHLLLDAIPDRVLIVGVPWVESGILYNGAAILARGEIVAVVPKHHLPTYGVFDEDRYFARGSHTFRFLWGNLRFGVTICEDIWYPIGPASSLATRGIDLLVNINGSPYHRGKWIQRQVMLQTRAADAGCYLAYVNMVGGQDELVFDGNSIVLDPNGTILARGTSFEEDLIVVDLPITRVLSSWLHDPRRRWLARAESQPALPVVDREIPLPVPGEQLPPLPESVQRPRTPLEGVAEVYQALVTGVRDYVRKTGFRTAVIGLSGGIDSSLTACIAADALGPENVTGLSMPSRYSSRHSIEDAEELARNLGIRFLIVPIEPVHRVFREVLAPLGNQPEEPDVADENLQARIRGTILMTYSNRFGPIVLTTGNKSEMACGYATLYGDMAGGFAVLKDVPKLLVYQLARYRNSISPVIPERVFVKPPSAELRPNQKDVDTLPPFEILDPLLELYVEQDLSREELIRHGFDPEIVDRVIMMVDRAEYKRRQAAPGVKLTPRAFGRDRRLPIANWFHG
SIO_010081: TRD_RS02110
subclass of: SO_0000673
so part of: TRD_RS02110
location: complement(453510..455258)
location: region:453510-455258:-1
so has part: feature:453510-455258:-1:exon

WP_041436330.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:453510-455258:-1:exon

TRD_RS02115
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: recN
locus tag: TRD_RS02115
old locus tag: trd_0460
so part of: sequence
location: 455377..457146
location: region:455377-457146:1
so has part: feature:455377-457146:1:exon
subclass of: SO_0000010

position:455377:1
position: 455377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:457146:1
position: 457146
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:455377-457146:1:exon

TRD_RS02115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: recN
locus tag: TRD_RS02115
old locus tag: trd_0460
inference: COORDINATES: protein motif:HMM:TIGR00634.1
GO component: GO:0005737 - cytoplasm [Evidence IEA]
GO function: GO:0005524 - ATP binding [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA repair protein RecN
translation: MRLRWNETTMLLQLTIRNIAIIREVQLEFGPGLTALTGETGAGKSILIDALGLVLGARASSDLVRSGTPRAWVEAIFDLTGLEQATDLQAMLSAHGIDLEDGQLILSREIQANGRSVARVNGQAIPASVLAVLGARLVDIHGQSDHLSLLRADRQLELLDRFAGVLPLRNELARLVREFRAVRRELEQLRMRTREREHRRDLLRYQVDEIARARLRVGEEEELVAERARLQNAERLASLATEVASSLDGDEFAPLDALRRAVLRLEELGRLDPEQRGLAEQLREALYTVEEVVRTVRTYAESIEADPDRLTVIEERLDLLRRLKRKYGATVEEILAYAEEAQRELAALETGEETIAELERRADELARAVVEHARELSARRRAAARALEQAMSAAMRDLRLGQGAFAVAFEQPDETGNEQERAAVCGETGWDRIEFLIAPNPGQELRPLARVASGGEMARLMLALKSSLSEVDETPTLVFDEVDVGIGSRSAHVVGERLWQLSRAHQVIVISHLPQIAAFADRHYKINKTVVNGQTETAVHHLEGEARLEELAAMLDGIPVTPESLANARAMVERLERRKLQLVGAGTGT
SIO_010081: TRD_RS02115
subclass of: SO_0000673
so part of: TRD_RS02115
location: 455377..457146
location: region:455377-457146:1
so has part: feature:455377-457146:1:exon

WP_226980708.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:455377-457146:1:exon

TRD_RS02120
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02120
old locus tag: trd_0461
so part of: sequence
location: 457207..457512
location: region:457207-457512:1
so has part: feature:457207-457512:1:exon
subclass of: SO_0000010

position:457207:1
position: 457207
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:457512:1
position: 457512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:457207-457512:1:exon

TRD_RS02120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02120
old locus tag: trd_0461
inference: COORDINATES: protein motif:HMM:NF014616.2
GO component: GO:0005737 - cytoplasm [Evidence IEA]
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0008150 - biological_process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: YbaB/EbfC family nucleoid-associated protein
translation: MQPNMRLLKQVQEQLAKMQAELAELVVEGSAGGGAVRVELDGLRHVRRVSIDPTLVEAGDIEMLEDLVAAAVNDALRRVEEAVTTKMGALAGGLGLPLSGL
SIO_010081: TRD_RS02120
subclass of: SO_0000673
so part of: TRD_RS02120
location: 457207..457512
location: region:457207-457512:1
so has part: feature:457207-457512:1:exon

WP_012641866.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:457207-457512:1:exon

TRD_RS02125
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02125
old locus tag: trd_0462
so part of: sequence
location: 457522..458490
location: region:457522-458490:1
so has part: feature:457522-458490:1:exon
subclass of: SO_0000010

position:457522:1
position: 457522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:458490:1
position: 458490
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:457522-458490:1:exon

TRD_RS02125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02125
old locus tag: trd_0462
inference: COORDINATES: protein motif:HMM:NF012517.2
GO function: GO:0070967 - coenzyme F420 binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO process: GO:0008150 - biological_process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TIGR03560 family F420-dependent LLM class oxidoreductase
translation: MRIGLMIEGQEDVTWERWLRGIELAERLGFESLWRSDHLFSVLGVPERETLALWPSLTVVALRTQCITFGQLVSPVSFRHPVELAQHAVALDHASGGRYVLGIGAGWYEREHQAFGFPLLSVRERMDRLAEALEVIQLLWTGEEVSYEGQYFRLECAQLRPRPQRGDRVPIVIGGRGEQRTLRLAARFADEWNVTNVDLDDHRRKIGLLREYCREQGRDPDSIVCSWMVAHIIGRDQTELFERARRLAAWFPQWGDWPPEAILAEARRRNWLVGKPEEVVEQIRARARIGVQRIMLQTFDLDDTDALALFASEIVPAVADAA
SIO_010081: TRD_RS02125
subclass of: SO_0000673
so part of: TRD_RS02125
location: 457522..458490
location: region:457522-458490:1
so has part: feature:457522-458490:1:exon

WP_012641867.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:457522-458490:1:exon

TRD_RS02130
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02130
old locus tag: trd_0463
so part of: sequence
location: complement(458554..460119)
location: region:458554-460119:-1
so has part: feature:458554-460119:-1:exon
subclass of: SO_0000010

position:458554:-1
position: 458554
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:460119:-1
position: 460119
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:458554-460119:-1:exon

TRD_RS02130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02130
old locus tag: trd_0463
inference: COORDINATES: protein motif:HMM:NF013434.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NAD(P)/FAD-dependent oxidoreductase
translation: MTGPQYDAIVIGSGHNGLIAAGYLAKAGKQVLVLERRPIIGGATVTEEHFPGYRLSTCSYVCSLLLPEVVRDLEMPKYGYEVRPFDPQYFVPFPDGRYLMVYLDERRTHAELAKFSRRDAERWHDYWAMWNRMIARFRPFILRPAPTLGELEQAFAGPDGLEDLRTLLLKSIAEVLDTFFESEEIKAPLCTGGVIGVNLGPKSPGTAYVKFHHLLGNLNGHQGAWGFVRGGMGSIAEALAGFCRDHGVTILTDAEVAEIDVSDGAARGVRLTDGRRFSARVILSNADPQRTFLQMVPANALPASFRDAITRMKVKGSVVKVLLGLNQLPNFRCLPGTEIGPQHTGGIVINPSIDYLERAWEDCKHGRPSARPFMDCYIQSATEDGLAPPGKHVMSLYVQYAPYDLAEGTWEERKDEIGRNIIDTLAEYAPNMWDAIEHMSVLGPRDIEDVIGITGGNIFHGEITPDQMFVFRPAPGFSGYESPIERLYLCGSGAWPGGAVFGAPGRNCALQVLADLERRGG
SIO_010081: TRD_RS02130
subclass of: SO_0000673
so part of: TRD_RS02130
location: complement(458554..460119)
location: region:458554-460119:-1
so has part: feature:458554-460119:-1:exon

WP_012641868.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:458554-460119:-1:exon

TRD_RS02135
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02135
old locus tag: trd_0464
so part of: sequence
location: complement(460476..461069)
location: region:460476-461069:-1
so has part: feature:460476-461069:-1:exon
subclass of: SO_0000010

position:460476:-1
position: 460476
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:461069:-1
position: 461069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:460476-461069:-1:exon

TRD_RS02135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02135
old locus tag: trd_0464
inference: COORDINATES: protein motif:HMM:NF012264.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cytochrome c
translation: MARSPIRSKTARRLVLGLLAGTALALLGSACVSSNTYPIDFFSEMHYQKSFRAQEPPRLDVPAGVVPITGGEPQYTLEEARNLQNPLANDPQAAARGQQLYAVNCVACHGPQGDGKGPLSVYWGLVQGAVPPSNLKDPAVVSRTDGELYWILTNGYTSPQNQVQYPHNLTNMPAFGKLLTPEQRWALVSYIRQLQKQ
SIO_010081: TRD_RS02135
subclass of: SO_0000673
so part of: TRD_RS02135
location: complement(460476..461069)
location: region:460476-461069:-1
so has part: feature:460476-461069:-1:exon

WP_012641869.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:460476-461069:-1:exon

TRD_RS02140
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02140
old locus tag: trd_0465
so part of: sequence
location: complement(461093..461632)
location: region:461093-461632:-1
so has part: feature:461093-461632:-1:exon
subclass of: SO_0000010

position:461093:-1
position: 461093
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:461632:-1
position: 461632
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:461093-461632:-1:exon

TRD_RS02140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02140
old locus tag: trd_0465
inference: COORDINATES: protein motif:HMM:NF023249.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF3341 domain-containing protein
translation: MAIREVLGLYRDLDSAVAAADALRDAGFSRSEFEVLSNAPYPEGTFGEESGIHRLFVFPLIGAACGFAAGLLITGGTQLSYPLLTGGKPLLSIPPMIIIMYEGTMLGALIFTVLGVLFESRLPWIGRALYDPRITQGYIGILVRTAPEREARAIEALRKANPEDILTESGNAGRQPARS
SIO_010081: TRD_RS02140
subclass of: SO_0000673
so part of: TRD_RS02140
location: complement(461093..461632)
location: region:461093-461632:-1
so has part: feature:461093-461632:-1:exon

WP_012641870.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:461093-461632:-1:exon

TRD_RS02145
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: nrfD
locus tag: TRD_RS02145
old locus tag: trd_0466
so part of: sequence
location: complement(461666..463039)
location: region:461666-463039:-1
so has part: feature:461666-463039:-1:exon
subclass of: SO_0000010

position:461666:-1
position: 461666
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:463039:-1
position: 463039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:461666-463039:-1:exon

TRD_RS02145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: nrfD
locus tag: TRD_RS02145
old locus tag: trd_0466
inference: COORDINATES: protein motif:HMM:NF015851.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: polysulfide reductase NrfD
translation: MQERHRLGEEEITRELLRPLMTTPAMMWVGFIGLGAVLAIFVFAVSWMFYWGLGVTGLQRPNMWGFMIVNFVFWIGISHAGVMISAILRLTQAEWRRPVTRAAEVMTIFSLMTAMLHPVIHTGRPWRTLYWVFPYDFWRNLWPDVRGPLVWDPSAILTYLTGSTLFLYTTMIPDMALARDRTTGWRRVLYTILALGWRGNERQWKMQTIAGFLLSGLILPVFVSVHSIVSWDFAVSLVPTWHATVFAPYFVIGAIHSGVSAVVTLMALMRWLFRFENYIRLEHFDAIGRLLIAVGTGWLWFFLLDIFFAIYPQEARELEIMQFRLFEWPFNVLTALIFIFGYFIPVPIWVFQRFRRNVKIMFWTSILVNVGMWAERYWLIKPGLMRKYEFTFDWNWYRPSIVEISIVLGSFALVGFLLLVFSKIFPPISVWEEKEGQHFAQQLRVGKRVVNAIVREF
SIO_010081: TRD_RS02145
subclass of: SO_0000673
so part of: TRD_RS02145
location: complement(461666..463039)
location: region:461666-463039:-1
so has part: feature:461666-463039:-1:exon

WP_012641871.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:461666-463039:-1:exon

TRD_RS02150
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02150
old locus tag: trd_0467
so part of: sequence
location: complement(463085..464479)
location: region:463085-464479:-1
so has part: feature:463085-464479:-1:exon
subclass of: SO_0000010

position:463085:-1
position: 463085
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:464479:-1
position: 464479
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:463085-464479:-1:exon

TRD_RS02150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02150
old locus tag: trd_0467
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MATHGHAHGHELQRTWELAPADVLGSALRWMRSTAAALRRPLVIAAILFVIGIVAIVAFPLRQGFANRQAWTYVAAAFLYLMSTAAAAPALSTALRVARSHWRRPVNRASEIWAVTLVIPFLLYLLLLPTFPGTEDRLSVWFGWPLSPWLWGAILLLTLTGAGYLFAWFSSLPDLAIVRDHGEPAQRGLAAWLSRGWVGSHRQWRIYEKVVNNIGVLYVLIYVPVMTVLASDFIIALIPGYFTAVFPAYFTITSFQAGIALTIVTMAVLRRWGGQADYLGREQFWALGKMLLAFSLLWFYFWWSEFIIFWYGRTPREIDILRFLMFETYLWPFILSFAMNFALPLLILMWNPIRRSIAGPTVVAAIVLLGNLIDRIRLASAAFSQPDKALLGHAHALKAIPPAYIPGIGDMLILIGMLAGALALVLWTARYLPFPSVAEVVGGLWLRAHQPFKHARLIVIGKTE
SIO_010081: TRD_RS02150
subclass of: SO_0000673
so part of: TRD_RS02150
location: complement(463085..464479)
location: region:463085-464479:-1
so has part: feature:463085-464479:-1:exon

WP_012641872.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:463085-464479:-1:exon

TRD_RS02155
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02155
old locus tag: trd_0468
so part of: sequence
location: complement(464509..465234)
location: region:464509-465234:-1
so has part: feature:464509-465234:-1:exon
subclass of: SO_0000010

position:464509:-1
position: 464509
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:465234:-1
position: 465234
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:464509-465234:-1:exon

TRD_RS02155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02155
old locus tag: trd_0468
inference: COORDINATES: protein motif:HMM:NF024247.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 4Fe-4S dicluster domain-containing protein
translation: MPRWGMVIDLDRCIGCGACVVACQAENNVPINTEDVYHQRRAIAWIRLERYWEGEYPNIKARYIPVPCMQCTNAPCEPVCPVYATYHTNEGINMQVYNRCIGTRYCAVNCHWHVRFFNFWEPKWPDSLKNQLNPDVTVRSRGVMEKCNFCVHRLVKAEQKAKTEKRSLRTDEVTTACAQACPTSAIVFGDLDDPNSAVSKLLAQAEQEGRVYRLLEDLGTDPKVYYLKKIDLEAAEHAATH
SIO_010081: TRD_RS02155
subclass of: SO_0000673
so part of: TRD_RS02155
location: complement(464509..465234)
location: region:464509-465234:-1
so has part: feature:464509-465234:-1:exon

WP_012641873.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:464509-465234:-1:exon

TRD_RS02160
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02160
old locus tag: trd_0469
so part of: sequence
location: complement(465271..467514)
location: region:465271-467514:-1
so has part: feature:465271-467514:-1:exon
subclass of: SO_0000010

position:465271:-1
position: 465271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:467514:-1
position: 467514
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:465271-467514:-1:exon

TRD_RS02160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02160
old locus tag: trd_0469
inference: COORDINATES: protein motif:HMM:NF012602.2
GO function: GO:0016491 - oxidoreductase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: molybdopterin-dependent oxidoreductase
translation: MRRRDFLKVAATSATGAVLFAGCGRIGDGVPESEFKIAQPVFNTNDWVYGRDAWFATAAPPDQGGYGLIVRVFEGRAKKVDGNPDFPGIHGKSDARAQALVQELYHPDRLSGARRATSRGSGQFQTIPWDSALQEVAQILREVGGEHAVLITGRLNASQAAIVAAFRKATGIRQAVLEPDEFVVLRTAIRRLFGVSTLPIPDLANARFLLNFSADFLHGWIAPVALAHAYGEFRQGKPGQRGLYYHVGPRLSGTAANADRWFPIIPGSEGLVALAIAQVLSTEGKAPQDRLDPYLTALGLDATRLASDYAPERVAPATGLSAEQIRELAHALVEHQPAVVIAGTSAAAATNGLFNLVATFGLNWILGSVNQPGGLLLNPEPPLPDLRVPDDAILSLRGWTELFEQIRSGTISTVLVYRANPVYALPSASGAREALQAAKHVVSFSPFLDETTTLADLVLPDQAWLEQWGLSVPDPGPGFAAVAIQQPVVAPFLDARAFGDVLLDLLRLLGQDQPWSTQEQATKALALQLRSLGRGSVTATNDKEFLVTLQARGGWWDEQSRATGSAPSTAAVQPREPAFAGEQNQFPYVLHPYPLPSLGYGELAHLPWLQGLPEPISTNVWQTWIEVSQATADELGLQTGDLVRVLTPQGVAELPVYVNPATQPGIIAIPFGQGHTAYTRYAEGRGVNPATLVAPETEPDTGTFAWAATRCRIEKTGRRARLARFEGMVPAFQLEEFPIVRVMAPKA
SIO_010081: TRD_RS02160
subclass of: SO_0000673
so part of: TRD_RS02160
location: complement(465271..467514)
location: region:465271-467514:-1
so has part: feature:465271-467514:-1:exon

WP_041436333.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:465271-467514:-1:exon

TRD_RS02165
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02165
old locus tag: trd_0470
so part of: sequence
location: complement(467567..468100)
location: region:467567-468100:-1
so has part: feature:467567-468100:-1:exon
subclass of: SO_0000010

position:467567:-1
position: 467567
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:468100:-1
position: 468100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:467567-468100:-1:exon

TRD_RS02165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02165
old locus tag: trd_0470
inference: COORDINATES: protein motif:HMM:NF025875.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cytochrome c3 family protein
translation: MRYVRLILFVLIVLVVMAVPLALVLARSYFLAPTAQPVKAQPIQFPHSVHVQAVGLDCTYCHRNATTSAQATLPPLELCMQCHKIIPTQGRPELEKLVAAFQQGQPILWNKVHQLPDHTHFVHSVHLSFGFQCSTCHGDVGAMGKPGVKQVRDLRMGDCITCHQQNGARTDCSVCHY
SIO_010081: TRD_RS02165
subclass of: SO_0000673
so part of: TRD_RS02165
location: complement(467567..468100)
location: region:467567-468100:-1
so has part: feature:467567-468100:-1:exon

WP_012641875.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:467567-468100:-1:exon

TRD_RS02170
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02170
old locus tag: trd_0471
so part of: sequence
location: complement(468159..468449)
location: region:468159-468449:-1
so has part: feature:468159-468449:-1:exon
subclass of: SO_0000010

position:468159:-1
position: 468159
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:468449:-1
position: 468449
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:468159-468449:-1:exon

TRD_RS02170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02170
old locus tag: trd_0471
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTPAVVTAEQWQQIHQTLIWFWAFLGCIVVFAANMLVAYAIIPSLVSTRDLPAKVAAIRPVLFALAAIFLIAAVFAFVNVVNGIQVLYEIWPQRWI
SIO_010081: TRD_RS02170
subclass of: SO_0000673
so part of: TRD_RS02170
location: complement(468159..468449)
location: region:468159-468449:-1
so has part: feature:468159-468449:-1:exon

WP_012641876.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:468159-468449:-1:exon

TRD_RS02175
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02175
old locus tag: trd_0472
so part of: sequence
location: 468663..469055
location: region:468663-469055:1
so has part: feature:468663-469055:1:exon
subclass of: SO_0000010

position:468663:1
position: 468663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:469055:1
position: 469055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:468663-469055:1:exon

TRD_RS02175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02175
old locus tag: trd_0472
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MARPSDAYVTICARYARWLGKGLQPEPGDWLVNQEGHPHAVTLVTSPQRAAGEEEILVPSLERLLAELAKECASFVIDYSGGEFACVAFDEQGRSLANVVASDASAAVAQALVFIRAERAAQERATRSPQ
SIO_010081: TRD_RS02175
subclass of: SO_0000673
so part of: TRD_RS02175
location: 468663..469055
location: region:468663-469055:1
so has part: feature:468663-469055:1:exon

WP_012641877.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:468663-469055:1:exon

TRD_RS02180
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02180
old locus tag: trd_0473
so part of: sequence
location: complement(469082..471022)
location: region:469082-471022:-1
so has part: feature:469082-471022:-1:exon
subclass of: SO_0000010

position:469082:-1
position: 469082
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:471022:-1
position: 471022
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:469082-471022:-1:exon

TRD_RS02180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02180
old locus tag: trd_0473
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRPLLVVLHDRPLQSLRAAGRFWEIAPTESAAELTGLLYPILTDAWQVALALERLGELAEAALCILAERRLPLSPNEIARALGRDEGATIAVLRQLYVAGLLASEPSGEGPRVFLPNEVARVIQRLEHERSDPIGPDGPLPALFGQLTDHELLELAERYGLAVIPSVTSRDQALGYLVSRLVDPTVLYRICTGLSPRARQLLTHLESRRAPIPLSELLRDRRWTFGELRRTVSELARYGLVWRTFEGSARCLMVLPTLTLGTSSTPTPQPIDDVSVTTQAPPQAAVLDLLLLLACSLRSGTAWPRESRPPRPLVAAIARQHWFWEDASDSLAYFIFLRRCAGSLGLLTPQGELARPRLAAWLRASFAEQGRRLFRVWSATSDPRDRELLPALVRQLRTLRVGAWYAWNEVVRESLGGTSSEREEARLQELEWLGIVQRGRTADGTRAIRLTSWGSWALGILRSVPQIDMRALFQTENGLTLELPVLTPEITWIASQLGTLQSSRPVPTWLLSARTVEDFVRTELRSGSFSLSLTDLPTAVIELLERALGSPLPSSWQESVRAWLAHSRPAVVRPALAVRFASTSDRDQAWALLEKVVESITPLDDTTLVAWLPETRVRRTIESVLRKGGFLVELQDHAGTDHRTKR
SIO_010081: TRD_RS02180
subclass of: SO_0000673
so part of: TRD_RS02180
location: complement(469082..471022)
location: region:469082-471022:-1
so has part: feature:469082-471022:-1:exon

WP_012641878.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:469082-471022:-1:exon

TRD_RS02185
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02185
old locus tag: trd_0474
so part of: sequence
location: complement(471206..472201)
location: region:471206-472201:-1
so has part: feature:471206-472201:-1:exon
subclass of: SO_0000010

position:471206:-1
position: 471206
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:472201:-1
position: 472201
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:471206-472201:-1:exon

TRD_RS02185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02185
old locus tag: trd_0474
inference: COORDINATES: protein motif:HMM:NF015651.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: lysylphosphatidylglycerol synthase transmembrane domain-containing protein
translation: MRRGVLVFVIAGVFSFVAWSFRDPEMVTGTLERLSPRVVLALLLVLSANEAIKAIRWAWYLRAAQLPLRFRDSITSYLAAQAASALPGGSILSARLAEEHAKGRIGLRHTAPPLIAQGLGDVFAVALLALIGIAASPQPNAQLVAPVAALILALLLITIARSERSGTALVGVLRRWRLTRRLVPVEEDARRTLVALLNGRALIPGTMTSIASSLCAVAILIMLANALTVRGLAPLEGLYVHGMSMLAHLFLPVPNGFGTTEISLVGLLNWIGIGFGRATAIAITYRALGIGFRTLIGLAVLLLRYHHLIQLRSPAQPVPTTLLDVASEASD
SIO_010081: TRD_RS02185
subclass of: SO_0000673
so part of: TRD_RS02185
location: complement(471206..472201)
location: region:471206-472201:-1
so has part: feature:471206-472201:-1:exon

WP_169302278.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:471206-472201:-1:exon

TRD_RS02190
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02190
old locus tag: trd_0475
so part of: sequence
location: complement(472399..473826)
location: region:472399-473826:-1
so has part: feature:472399-473826:-1:exon
subclass of: SO_0000010

position:472399:-1
position: 472399
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:473826:-1
position: 473826
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:472399-473826:-1:exon

TRD_RS02190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02190
old locus tag: trd_0475
inference: COORDINATES: protein motif:HMM:NF019844.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SH3 domain-containing protein
translation: MRERTRPFLHCVCAVLLLIMLPIQSVRAVSTLTVGQPATVMGTNGDGLNLREGPGYDFTVIVVMPEGATVRVIGGPQPDARGNLWWNVQWGEKSGWALANYLAPSNDENRPSSSFQMRATFRIFAHSLGLVGERTANGHVIQPNDFFVTLPCTCALSSRGGHEFQVLVEYKGRSLVLPVWDVGPWNVDDDFWNPPEVRRWKGLPQGVPAAQAAYFHGYNGGKDGWGRPVRSPAAMDIADGAFAALGMTQSDWVTVTFLWLVKDPPSPLPAPPRGYEEIVTVHPGERPPLDPVAAADPARYIYMPETGHNVPVFLHTAWQQGGGWQRYGLPISEFFREVGIDGTVRFVQYFERAVLLYDPASGNVSELPVGYYAAAPFEAWQPVELFPDSTDRLYFRETRHSLSNGFKAYWSANGGRAVFGLPITEEFRVDLPDGRWYIAQLFERARLEWWPDRIGQPDEITRGRIVAEIVAAQYP
SIO_010081: TRD_RS02190
subclass of: SO_0000673
so part of: TRD_RS02190
location: complement(472399..473826)
location: region:472399-473826:-1
so has part: feature:472399-473826:-1:exon

WP_012641880.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:472399-473826:-1:exon

TRD_RS02195
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02195
old locus tag: trd_0476
so part of: sequence
location: 474162..475004
location: region:474162-475004:1
so has part: feature:474162-475004:1:exon
subclass of: SO_0000010

position:474162:1
position: 474162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:475004:1
position: 475004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:474162-475004:1:exon

TRD_RS02195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02195
old locus tag: trd_0476
inference: COORDINATES: protein motif:HMM:NF012670.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transketolase
translation: MTVIETRLTPDRLEELESLARRLRRTVLIMTTEAGSGHPTSSLSAVEIMVALYFGGLLRYDPARPDWPDRDRFILSKGHAAPILYAVLAEAGYFAKDLLRTLRKLGSPLEGHPNMRRLPGVEASTGSLGQGLSIGLGHALAARLDGRDYHVFVLLGDGEIEEGQVWEAAMAAAHWRVSNLVAIVDHNGYQQTGPVAAVTDPREYAMKWRAFGWHVEEVNGHDLEAVHEVLRFARAYRDGPVCIIAHTVKGKGVSFLERDFTWHGRAVPRDRLERALEELA
SIO_010081: TRD_RS02195
subclass of: SO_0000673
so part of: TRD_RS02195
location: 474162..475004
location: region:474162-475004:1
so has part: feature:474162-475004:1:exon

WP_012641881.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:474162-475004:1:exon

TRD_RS02200
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02200
old locus tag: trd_0477
so part of: sequence
location: 475001..475963
location: region:475001-475963:1
so has part: feature:475001-475963:1:exon
subclass of: SO_0000010

position:475001:1
position: 475001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:475963:1
position: 475963
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:475001-475963:1:exon

TRD_RS02200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02200
old locus tag: trd_0477
inference: COORDINATES: protein motif:HMM:NF014798.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transketolase C-terminal domain-containing protein
translation: MNIGTRAGLRMGKATRDAFGEALRDLGGVYPDLVVVDGDVSNSTRTEYFAQAFPQRFFNVGIAESNLIGVASGLAASGKRVVAASFACFLLCNAFDQIRMGVAYPRLNVKLVGSHAGISIGEDGPSQMGIEDVALALSLPGVAVLVPADEHATRAATRAMLEWEGPTYLRLGRPPVPVIYEPPVDFVIGRAFRLREGNDVTIIANGLMVAMALDAAEELAARGVQARVLDMATVRPLDVDAVIAAARETRGIVVAEEHLHYGGLGSVVAMAVSQHHPCPMRFVDLDDRYAESGAPDDLLRAYGLTSERIVAAALELTERI
SIO_010081: TRD_RS02200
subclass of: SO_0000673
so part of: TRD_RS02200
location: 475001..475963
location: region:475001-475963:1
so has part: feature:475001-475963:1:exon

WP_012641882.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:475001-475963:1:exon

TRD_RS02205
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: rpiA
locus tag: TRD_RS02205
old locus tag: trd_0478
so part of: sequence
location: 475966..476679
location: region:475966-476679:1
so has part: feature:475966-476679:1:exon
subclass of: SO_0000010

position:475966:1
position: 475966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:476679:1
position: 476679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:475966-476679:1:exon

TRD_RS02205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: rpiA
locus tag: TRD_RS02205
old locus tag: trd_0478
EC number: 5.3.1.6
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012641883.1
GO function: GO:0004751 - ribose-5-phosphate isomerase activity [Evidence IEA]
GO process: GO:0009052 - pentose-phosphate shunt, non-oxidative branch [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribose-5-phosphate isomerase RpiA
translation: MGTERAKERAARFAASLVEDGMIVGLGSGSTAELAVRALGERLHDGLRLIGVATSQRTAALARRVGIELRDPDSVDRIDLAIDGADEVEERSLGLLKGRGGALVREKLVARMARRLVIIIDDSKLVAALGARFPLPVEVVPFGWRWCARWLEDLGGRPTLRCRPTGHPFRSDNGNLILDVAFGAIADPAWLDRTIKMLPGVIDHGLFLDMADLVIVGSETGIRLLERSRTVSETSKS
SIO_010081: TRD_RS02205
subclass of: SO_0000673
so part of: TRD_RS02205
location: 475966..476679
location: region:475966-476679:1
so has part: feature:475966-476679:1:exon

WP_012641883.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:475966-476679:1:exon

TRD_RS13475
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS13475
old locus tag: trd_0480
so part of: sequence
location: 476967..478361
location: region:476967-478361:1
so has part: feature:476967-478361:1:exon
subclass of: SO_0000010

position:476967:1
position: 476967
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:478361:1
position: 478361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:476967-478361:1:exon

TRD_RS13475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS13475
old locus tag: trd_0480
inference: COORDINATES: protein motif:HMM:NF024919.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LysM peptidoglycan-binding domain-containing protein
translation: MPSRAIPQLFLRRDCQVSLAPLRALRYSVRTQCPFTVAEKGEAVTMGLVERYVERERWRRRLQLEMAPAQDPEPLVRFGRSALPRARGGRRRWLAGLGVIAALAAERADATTLHVVQPGETLSQIATRYGVSVPDLARANELSNPDRILVGAVLRIPASLLVSERVHRVRPGERLTSIAQRYGVSVESIRQANRLPDPDRILVGQMLVIPSVPETAMDTSASSSARRYVVQPGDTLSALAVRFGVPLSTLVKANGITDPDRLLAGQTLVIPRRELGAGVLLAGVPAYRQSLPLSCESAAVSMVTAYWGKPVSEWVFIENLPSHPNPHRGFRGNMSGTFGGTDDYGVYAEPFIPILERYGFRAQAVYARGDVSVLREELSLGRPVVVWMTNLASVQPRLIGEADGERFILVPQEHAFVVYGYDEERVYVVDPGDGQYRSFGWEDFLRSWGYFDGMLLRILPAPWG
SIO_010081: TRD_RS13475
subclass of: SO_0000673
so part of: TRD_RS13475
location: 476967..478361
location: region:476967-478361:1
so has part: feature:476967-478361:1:exon

WP_012641884.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:476967-478361:1:exon

TRD_RS02215
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02215
old locus tag: trd_0479
so part of: sequence
location: complement(478358..478855)
location: region:478358-478855:-1
so has part: feature:478358-478855:-1:exon
subclass of: SO_0000010

position:478358:-1
position: 478358
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:478855:-1
position: 478855
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:478358-478855:-1:exon

TRD_RS02215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02215
old locus tag: trd_0479
inference: COORDINATES: protein motif:HMM:NF025046.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF4149 domain-containing protein
translation: MSEWVWALVRWVHLVAMAIWLGGQLFLFLVVRPVLRSQLDRPTQTQLTAAFGRRYSPLAWISLIVAILTGFAIGEHRGVAWSALVSFPSAYGTLLIMKMTLVALILVLTLLHGRFIGPQLTELARSLDPRDRQRYRQLLDLSVLISTANLLLTLLIVLLSARLVA
SIO_010081: TRD_RS02215
subclass of: SO_0000673
so part of: TRD_RS02215
location: complement(478358..478855)
location: region:478358-478855:-1
so has part: feature:478358-478855:-1:exon

WP_012641885.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:478358-478855:-1:exon

TRD_RS02220
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02220
old locus tag: trd_0482
so part of: sequence
location: 479213..480406
location: region:479213-480406:1
so has part: feature:479213-480406:1:exon
subclass of: SO_0000010

position:479213:1
position: 479213
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:480406:1
position: 480406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:479213-480406:1:exon

TRD_RS02220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02220
old locus tag: trd_0482
EC number: 1.6.1.2
inference: COORDINATES: protein motif:HMM:NF006942.0
GO function: GO:0008746 - NAD(P)+ transhydrogenase activity [Evidence IEA]
GO process: GO:1902600 - proton transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha
translation: MLYERAAVVQQASSGPGLVIGVPRERAPRERRVAATPETVARYLKRGFRVIVEQEAGLAAGFPDEEYRQAGAEIVAEPGDLYRRASVIIKVQRPLPEEIEFLQPGHVIIAFLQPLIAPELVAVLAERGVVAVSMDTIPRITRAQPMDALSSMSTVAGYKAVLLAANELPKFFPLMMTAAGTIRPAKVLVLGAGVAGLQAIATARRLGALVEAFDTRPVVKEQVESLGAKFLELDVTTEEVGGYAKELAEEHLRREQELIHRHCLEADVVITTALVPGRRAPLLVRETTVREMRPRSVIVDLAAEMGGNCELTVPGETVVRYGVTIMGPLNLPSEMAYTASQMYARNVATLLEHLAPKGEFVWNLEDEITRGVVLTKDGTILHGPTLERLKEIKEEVR
SIO_010081: TRD_RS02220
subclass of: SO_0000673
so part of: TRD_RS02220
location: 479213..480406
location: region:479213-480406:1
so has part: feature:479213-480406:1:exon

WP_012641887.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:479213-480406:1:exon

TRD_RS02225
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02225
old locus tag: trd_0483
so part of: sequence
location: 480403..480756
location: region:480403-480756:1
so has part: feature:480403-480756:1:exon
subclass of: SO_0000010

position:480403:1
position: 480403
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:480756:1
position: 480756
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:480403-480756:1:exon

TRD_RS02225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02225
old locus tag: trd_0483
inference: COORDINATES: protein motif:HMM:NF024179.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NAD(P) transhydrogenase subunit alpha
translation: MNQEFLLGLYVLILTIFLGFEVISRVPTLLHTPLMSGTNAIHGIVLLGGILVAGTAENPLTLLLGFLGCLFGAGNLFGGIVVTDRMLEMFKKKEPAARQAGERSTAKAPEKEVVGQR
SIO_010081: TRD_RS02225
subclass of: SO_0000673
so part of: TRD_RS02225
location: 480403..480756
location: region:480403-480756:1
so has part: feature:480403-480756:1:exon

WP_012641888.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:480403-480756:1:exon

TRD_RS02230
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02230
old locus tag: trd_0484
so part of: sequence
location: 480753..482156
location: region:480753-482156:1
so has part: feature:480753-482156:1:exon
subclass of: SO_0000010

position:480753:1
position: 480753
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:482156:1
position: 482156
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:480753-482156:1:exon

TRD_RS02230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02230
old locus tag: trd_0484
inference: COORDINATES: protein motif:HMM:NF014307.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta
translation: MIENLRDAVVDLVYLVCAVVIILGLKRLSSPRTARSGNKLVAAGLLVAVGVTLLDPHIHWRPANIAVMLIGTVVGAAGSIYLARVVPMTAMPQMVALFNGMGGATAALVAVAEFQRFVASGAVTAGERVSVAFGTTVGSVAFTGSVIAFLKLQELMTGRPVRFPLQIPLNVAVVAGIVAMWAWLLGFAGSSASVWIMFGLALLFGILLVLPVGGADMPVVISVLNSMTGLAAAAAGFVLENQILVVAGALVGASGSLLTILMSRAMNRSLANVLFGAYRTRAAGAAVAEAKPIRETTVEDTAVLLAYANLVIIVPGYGLAVAQAQHELAELANELEKRGVEVKFAIHPVAGRMPGHMNVLLAEANIPYDKLYEMEQINEEFQRADVALVVGANDVVNPAARTDPSSPLYGMPILNADQAKNVIVLKRSMRPGFAGVENELFHMPQTRMLFGDAKETLKRLVEAVKSV
SIO_010081: TRD_RS02230
subclass of: SO_0000673
so part of: TRD_RS02230
location: 480753..482156
location: region:480753-482156:1
so has part: feature:480753-482156:1:exon

WP_012641889.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:480753-482156:1:exon

TRD_RS02240
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02240
old locus tag: trd_0486
so part of: sequence
location: 482637..483002
location: region:482637-483002:1
so has part: feature:482637-483002:1:exon
subclass of: SO_0000010

position:482637:1
position: 482637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:483002:1
position: 483002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:482637-483002:1:exon

TRD_RS02240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02240
old locus tag: trd_0486
inference: COORDINATES: protein motif:HMM:NF014664.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: carboxymuconolactone decarboxylase family protein
translation: MTQQSRLEQFRAYRARMNQRIGEIGHREINRFFALDSATYRDGALDARTKELLGLVASLVLRCNDCVDYHLDRCVALGWSDAELYDAMQVALMVGGSIVIPHLRHAVETLDLLRAERHERD
SIO_010081: TRD_RS02240
subclass of: SO_0000673
so part of: TRD_RS02240
location: 482637..483002
location: region:482637-483002:1
so has part: feature:482637-483002:1:exon

WP_041435919.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:482637-483002:1:exon

TRD_RS02245
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02245
old locus tag: trd_0487
so part of: sequence
location: 483080..484351
location: region:483080-484351:1
so has part: feature:483080-484351:1:exon
subclass of: SO_0000010

position:483080:1
position: 483080
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:484351:1
position: 484351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:483080-484351:1:exon

TRD_RS02245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02245
old locus tag: trd_0487
inference: COORDINATES: protein motif:HMM:TIGR00225.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: S41 family peptidase
translation: MRAETRPKRNSGSSRGPWVLLSLALFLAGFAIGQEWPRPLATPTPAIMPTAAVMPTPVAVFSEAWSLLHEHYVDPAALDDQRLLAGALRGLADAVGDNGHTRYLTAEELAQHSEQLSGEYSGVGIEISEQDNTIVVRDVFAGSPAARAGIQPGDVLVAVDGIPVSELGLDGVVQRVRGPEGTVVTLVIQQVGKASPLEVRLVRSKVRFSGVRWAVLAERVGLLRVSSFAAGTAEDARQGLSELAAAGARGVILDLRGNPGGLVDQAVDVAGLFLPPDTVVLRSRDRSGKETVYRTKPDAQPVTLPLVVLVNRETASAAEIVAGALQDHRRAVIIGERTFGTGTVLAEFRLRDGSALLIGTQVWVTPNGRVIWRNGIEPDITVAPAAEDVTIVPRRGEILPAEQIRSDSQLLAAWEYLLERDRA
SIO_010081: TRD_RS02245
subclass of: SO_0000673
so part of: TRD_RS02245
location: 483080..484351
location: region:483080-484351:1
so has part: feature:483080-484351:1:exon

WP_012641892.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:483080-484351:1:exon

TRD_RS13480
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS13480
old locus tag: trd_0488
so part of: sequence
location: 484372..484782
location: region:484372-484782:1
so has part: feature:484372-484782:1:exon
subclass of: SO_0000010

position:484372:1
position: 484372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:484782:1
position: 484782
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:484372-484782:1:exon

TRD_RS13480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS13480
old locus tag: trd_0488
inference: COORDINATES: protein motif:HMM:NF015690.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF309 domain-containing protein
translation: MSVREPDVSGNRASPPDAWRVASELYQAGDLFGCHEILEHVWRATEGSLREFYRGLIQVVVGLYHAQRGNRVGARAVLARGLARIEQYPEDCLGMDWGPFRRSARCYLEWLESGMEGAEPARPVWPRERYLDPTVQ
SIO_010081: TRD_RS13480
subclass of: SO_0000673
so part of: TRD_RS13480
location: 484372..484782
location: region:484372-484782:1
so has part: feature:484372-484782:1:exon

WP_052294040.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:484372-484782:1:exon

TRD_RS02255
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02255
old locus tag: trd_0489
so part of: sequence
location: 484795..485535
location: region:484795-485535:1
so has part: feature:484795-485535:1:exon
subclass of: SO_0000010

position:484795:1
position: 484795
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:485535:1
position: 485535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:484795-485535:1:exon

TRD_RS02255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02255
old locus tag: trd_0489
inference: COORDINATES: protein motif:HMM:NF014625.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PIG-L family deacetylase
translation: MVRVPERPESVLVIMAHPDDAEFICAGTVARWASQGSQVIYVLVTSGDKGSNDPTMTPERLAALREAEQREAARILGVEHVEFLRYRDAEVVADLGLRREIVRMVRRFRPSAVICQDPTARYYGQSYIQHPDHIAVGEATLAAVFPSARDRLTFPELLAEGLEPHIVAHVYLAGAREPDVFVDITPFFEKKLAALKAHRSQLGDWDPEPMLRLWAQDTAAEARRRGWPGSEEMLLAEAFKYFAIGE
SIO_010081: TRD_RS02255
subclass of: SO_0000673
so part of: TRD_RS02255
location: 484795..485535
location: region:484795-485535:1
so has part: feature:484795-485535:1:exon

WP_012641894.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:484795-485535:1:exon

TRD_RS02260
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02260
old locus tag: trd_0490
so part of: sequence
location: 485878..486864
location: region:485878-486864:1
so has part: feature:485878-486864:1:exon
subclass of: SO_0000010

position:485878:1
position: 485878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:486864:1
position: 486864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:485878-486864:1:exon

TRD_RS02260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02260
old locus tag: trd_0490
inference: COORDINATES: protein motif:HMM:NF015651.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: lysylphosphatidylglycerol synthase transmembrane domain-containing protein
translation: MRRVVLGIIVSLVFLGLALRGQDFPALGAALRAADYWWLLPAIAVYFCGVVVRALRWATLLAPVRRLTWRQLFPVVAVGYMANNVLPFRTGEVVRAYAVSRQFGVSKTATLATIVLERLLDGLTMLAFILVAASAVALNSALRHVAIVAAAIFVPAFGLLVLSARSGRVVRFVYWIVRLVPRGVRQRTERSVESGFQGVAVFRSSAALGRVAGLSVLAWLAEAAMYAAVARAFGLELSAAIVLLTTAVANLATLIPSSPGYLGPFEAGVLLVLAGLAGVPRTIAFSYAIVLHAALYFPITLVGLLYWSKLQLDWVAIRRAESEEAVRL
SIO_010081: TRD_RS02260
subclass of: SO_0000673
so part of: TRD_RS02260
location: 485878..486864
location: region:485878-486864:1
so has part: feature:485878-486864:1:exon

WP_012641895.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:485878-486864:1:exon

TRD_RS02265
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: uppP
locus tag: TRD_RS02265
old locus tag: trd_0491
so part of: sequence
location: 486861..487697
location: region:486861-487697:1
so has part: feature:486861-487697:1:exon
subclass of: SO_0000010

position:486861:1
position: 486861
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:487697:1
position: 487697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:486861-487697:1:exon

TRD_RS02265
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: uppP
locus tag: TRD_RS02265
old locus tag: trd_0491
EC number: 3.6.1.27
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012641896.1
GO component: GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO function: GO:0050380 - undecaprenyl-diphosphatase activity [Evidence IEA]
GO process: GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]; GO:0046677 - response to antibiotic [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: undecaprenyl-diphosphatase UppP
translation: MNVWQAAVLGIVQGTTEFLPISSSAHLIVLPWLFDWPEPGLAFNVALHLGTLSAVLAYFWRDLIQIGRAWFAGLIRLRPLEDSASRLGWAVIIGSLPAGLAGFFLNDVIDHFFHSGGGGDTAIVFTSLLLIVLGFVLWLAERYGTRWRSLGELGLRDGLVVGLAQALALLPGVSRSGSTITASLFLGFARPAAARFSFILGIPAIAGAGLLETLKLVETGLPAEQRVLFVTGVASAAITGFLAIAFLLRFLQRYSTSIFIVYRIALGLVLLLVVSFAR
SIO_010081: TRD_RS02265
subclass of: SO_0000673
so part of: TRD_RS02265
location: 486861..487697
location: region:486861-487697:1
so has part: feature:486861-487697:1:exon

WP_012641896.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:486861-487697:1:exon

TRD_RS02270
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02270
old locus tag: trd_0492
so part of: sequence
location: complement(487703..489337)
location: region:487703-489337:-1
so has part: feature:487703-489337:-1:exon
subclass of: SO_0000010

position:487703:-1
position: 487703
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:489337:-1
position: 489337
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:487703-489337:-1:exon

TRD_RS02270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02270
old locus tag: trd_0492
inference: COORDINATES: protein motif:HMM:TIGR00711.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MFS transporter
translation: MTAAPRTRWLGLASLALGLAMIIVDATIVNVAIPSIIEDLGLQLTDAEWVNTVYSLVFAALLVTVGRLGDLYGRKRIYLGGLALFVGASLLCASAPSGTLLIAARALQGIGAACILPSTLSSVNAMFRGRERALAFGIWGSVIGGMAALGPLVGGWLTTDFSWRWAFYINLPIGLVAGTIALLTVPETRDPSAAPGIDLIGIVTSAIGFAALVFGLIEGERYGWWRPTDTFRIGSWEWPFATLSPVPVALALAALFLPTFALYELRRVRANRPVLLDLRLFRYRTFRWGNLAALIVSLGEFGIVFVLPLYLQAVLGYTAFQTGLVLLATAIGAFLGGPAAANLAQRFGARQVIRAGMLFEAVGLLLIVPFLAPDTTGWRLAPALFLYGLGVGLATAQLTSVILAEVPTAQSGQASGTQSTTRQVGAALGIALLGTILAAGLGSGTKSRLIDQLGIPPQQAAALARAAKQSAGQILVQLQTQPGTQPIVQAIEAAFTDAARRTALVAAAFILVGFIASWLIPDIRPERGPTAVSEPATAESRPTG
SIO_010081: TRD_RS02270
subclass of: SO_0000673
so part of: TRD_RS02270
location: complement(487703..489337)
location: region:487703-489337:-1
so has part: feature:487703-489337:-1:exon

WP_012641897.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:487703-489337:-1:exon

TRD_RS02275
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02275
old locus tag: trd_0493
so part of: sequence
location: complement(489566..489910)
location: region:489566-489910:-1
so has part: feature:489566-489910:-1:exon
subclass of: SO_0000010

position:489566:-1
position: 489566
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:489910:-1
position: 489910
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:489566-489910:-1:exon

TRD_RS02275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02275
old locus tag: trd_0493
inference: COORDINATES: protein motif:HMM:NF007494.0
GO function: GO:0000049 - tRNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tRNA-binding protein
translation: MEAKPPIELADFQRVDLRVGRIVAVEEFPEARRPSYKLTIDFGPLGVKRSSAAIRPWYAPEDLIGRLIIAVVNLPVRRVAGFPSEVLVLGAIQPDGRVILLQPDQPTDPGNPIA
SIO_010081: TRD_RS02275
subclass of: SO_0000673
so part of: TRD_RS02275
location: complement(489566..489910)
location: region:489566-489910:-1
so has part: feature:489566-489910:-1:exon

WP_012641898.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:489566-489910:-1:exon

TRD_RS13485
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS13485
old locus tag: trd_0494
so part of: sequence
location: 489981..490727
location: region:489981-490727:1
so has part: feature:489981-490727:1:exon
subclass of: SO_0000010

position:489981:1
position: 489981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:490727:1
position: 490727
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:489981-490727:1:exon

TRD_RS13485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS13485
old locus tag: trd_0494
inference: COORDINATES: protein motif:HMM:NF012514.2
GO function: GO:0016787 - hydrolase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NUDIX domain-containing protein
translation: MQYRRETTDPQDEIFDVLTQDGELTGERAARWLVHQNGLWHPAFHLWIAWATPEGLRVLLQRRSLTKDTMPGRVDVSVGGHFKAGEFVPGQPLAPLMLAAIVREVNEELGFRLEPSVIQWLGTRWSEAVQANICDREVQYLYFWLRDEPLVAIEPDPREVAALLAVSVRGLLELLEQERMSVEAPVLWSSESGAGSTRSVQAVTFADLVPGRQRYWRVVLHLLEQNAAKGEVPTEPLVLHGKSEADAG
SIO_010081: TRD_RS13485
subclass of: SO_0000673
so part of: TRD_RS13485
location: 489981..490727
location: region:489981-490727:1
so has part: feature:489981-490727:1:exon

WP_012641899.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:489981-490727:1:exon

TRD_RS02285
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: aceB
locus tag: TRD_RS02285
old locus tag: trd_0495
so part of: sequence
location: complement(490918..492486)
location: region:490918-492486:-1
so has part: feature:490918-492486:-1:exon
subclass of: SO_0000010

position:490918:-1
position: 490918
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:492486:-1
position: 492486
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:490918-492486:-1:exon

TRD_RS02285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: aceB
locus tag: TRD_RS02285
old locus tag: trd_0495
EC number: 2.3.3.9
inference: COORDINATES: protein motif:HMM:NF013442.2
GO function: GO:0004474 - malate synthase activity [Evidence IEA]
GO process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: malate synthase A
translation: MGDVRIVGRMTPEFAQILTEPALDFVASLHREFNLRRKQLLERRAERQQAIDAGHFPDFLPETAHIRESEWRVAPTPPDLEDRRVEITGPVDRKMMINALNSGARVFMADFEDALSPTWDNVVQGQINLRDAVRRTISFESPDGRVYRLADKTATLVVRPRGWHLVERHVLVDGEPISASLFDFGLYFFHNAHELLARNTGPYFYLPKLESHLEARLWNDVFNFAQDRLGIPRGTIRATVLIETILAAFEMDEILWELRDHAAGLNAGRWDYIFSVIKKFRRHREFLLPDRAQVTMTVPFMRAYTELLVRTCHRRGAHAIGGMAAFIPSRRDPQVNEIALAKVREDKEREAKDGFDGTWVAHPDLVPVALEVFDRVLGEQPHQKHRLREDVQVTARDLLDVRVPGGRITEGGLRNNVSVALQYLDSWLRGQGAAAIFNLMEDTATAEISRAQLWQWRFHRAELDDGRPVTAELYVQIRDEELTKLGGEVAGRLREAREILDRLVLDDEFTEFLTYLAYEYID
SIO_010081: TRD_RS02285
subclass of: SO_0000673
so part of: TRD_RS02285
location: complement(490918..492486)
location: region:490918-492486:-1
so has part: feature:490918-492486:-1:exon

WP_012641900.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:490918-492486:-1:exon

TRD_RS02290
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02290
old locus tag: trd_0496
so part of: sequence
location: complement(492595..493755)
location: region:492595-493755:-1
so has part: feature:492595-493755:-1:exon
subclass of: SO_0000010

position:492595:-1
position: 492595
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:493755:-1
position: 493755
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:492595-493755:-1:exon

TRD_RS02290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02290
old locus tag: trd_0496
inference: COORDINATES: protein motif:HMM:NF025091.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: isocitrate lyase/PEP mutase family protein
translation: MWSLPQAVTDPNELRETPLLPPGYRVPASRWIHPSTRLRQLLETLPYVFAPGVYDPHGAQLVMYYGFPAVYFSGYSFAIGHLGTTDMDLYSSVEIADAARRIVAGLRKFQLTMAVGDPEKGIPPKHLHIPPVVADMDTGYGNLFNVQRTTELYVTAGVAGAHIEDQVMPKRCGHIAGKALIPAQEMVGKLKMMRAVANDLGNPDFVIIARTDGVSAVDAPEAKRGLPLAIERALRYLDSGVPDLVWCEFPTSERGPLETFVEEVRKRFPDARFAFNWSSSFKWFTDPNPISFRELGEMGVRFIFITLAAQHAMGLGFSELLQHLAARQERAYIDLQKREWAEGTDFPTRSHHFFSGVPYHHLLGQVYDAPRLGTQFEEELPEEAVV
SIO_010081: TRD_RS02290
subclass of: SO_0000673
so part of: TRD_RS02290
location: complement(492595..493755)
location: region:492595-493755:-1
so has part: feature:492595-493755:-1:exon

WP_052294041.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:492595-493755:-1:exon

TRD_RS02295
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02295
old locus tag: trd_0497
so part of: sequence
location: 494099..494998
location: region:494099-494998:1
so has part: feature:494099-494998:1:exon
subclass of: SO_0000010

position:494099:1
position: 494099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:494998:1
position: 494998
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:494099-494998:1:exon

TRD_RS02295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02295
old locus tag: trd_0497
inference: COORDINATES: protein motif:HMM:NF015431.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LysR family transcriptional regulator
translation: MDVSLRQLQVFRSVARHRSFSRAAEDLVISQPAVSAQIKSLEQVLGVPLFQRTGRGVELTEAGRQLLPYAERLLNLLDEALAAVHELRCAQRGQVRVAASTTAGIYVVPKALGAFHRAYPGVELSLDVLNRFAVHQRLLAGDADVAIMGLIEDPQDLEIEQFLPNELVVIASPRHHLARRHQIPLDEIAREPFLVREIGSGTRADMERIFAEAGLSPRVAMELRSNGAIKQAVAADLGVAVMPRDAIGLELETGRLIVLDVQGFPVRRWWSLVRRAGRQPSAAADALWNFLLQYRLQAR
SIO_010081: TRD_RS02295
subclass of: SO_0000673
so part of: TRD_RS02295
location: 494099..494998
location: region:494099-494998:1
so has part: feature:494099-494998:1:exon

WP_012641902.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:494099-494998:1:exon

TRD_RS02300
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02300
old locus tag: trd_0498
so part of: sequence
location: complement(495002..495841)
location: region:495002-495841:-1
so has part: feature:495002-495841:-1:exon
subclass of: SO_0000010

position:495002:-1
position: 495002
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:495841:-1
position: 495841
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:495002-495841:-1:exon

TRD_RS02300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02300
old locus tag: trd_0498
inference: COORDINATES: protein motif:HMM:NF014017.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF72 domain-containing protein
translation: MGRLLVGTSSWTDHEGFYPPGIEARERLRFYARYFPIVEVNSTYYAIPSRRVVQGWVERTPPGFVFDVKPPRQLTATPEQPGGEAPVPDADIAHRFLDAIEPLITAGKLGAITFQFPPSYRNTEEHREYLRLLPELFPDLPLSVEFRRRDWLDARHAQATLELLRESGLSYTMVDEPQVGIGCVPPIYAVTNPRLAVVRFHGRNAETWYRFTGKTGERFNWEYRREELEEWRPKLLRAAAEAQEVHVFFNTNYGNQGPRNAVLLMDLLGIEHPPLPGIG
SIO_010081: TRD_RS02300
subclass of: SO_0000673
so part of: TRD_RS02300
location: complement(495002..495841)
location: region:495002-495841:-1
so has part: feature:495002-495841:-1:exon

WP_012641903.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:495002-495841:-1:exon

TRD_RS15065
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS15065
so part of: sequence
location: 496356..496808
location: region:496356-496808:1
so has part: feature:496356-496808:1:exon
subclass of: SO_0000010

position:496356:1
position: 496356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:496808:1
position: 496808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:496356-496808:1:exon

TRD_RS15065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS15065
inference: COORDINATES: protein motif:HMM:NF024590.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: thioredoxin family protein
translation: MPILSPADQEYLRQVFVERLRDPITIQLFTQRVTQISIPGYECATCRETNQLLEEVAALSEKIMLEMYDFLQEGAKAREAGVEEIPAIILKGHNKGTLRFIGVPAGYEFATLIEDIIDVSRETTELSPLSRETLAKLAQPVHIKVFVTPT
SIO_010081: TRD_RS15065
subclass of: SO_0000673
so part of: TRD_RS15065
location: 496356..496808
location: region:496356-496808:1
so has part: feature:496356-496808:1:exon

WP_226980709.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:496356-496808:1:exon

TRD_RS15070
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS15070
pseudo: true
so part of: sequence
location: <496824..497057
location: region:496824-497057:1
so has part: feature:496824-497057:1:exon
subclass of: SO_0000010

position:496824:1
position: 496824
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:497057:1
position: 497057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:496824-497057:1:exon

TRD_RS15070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS15070
inference: COORDINATES: protein motif:HMM:NF024590.2
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: thioredoxin family protein
SIO_010081: TRD_RS15070
subclass of: SO_0000673
so part of: TRD_RS15070
location: <496824..497057
location: region:496824-497057:1
so has part: feature:496824-497057:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:496824-497057:1:exon

TRD_RS02310
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02310
old locus tag: trd_0501
so part of: sequence
location: 497077..498597
location: region:497077-498597:1
so has part: feature:497077-498597:1:exon
subclass of: SO_0000010

position:497077:1
position: 497077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:498597:1
position: 498597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:497077-498597:1:exon

TRD_RS02310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02310
old locus tag: trd_0501
inference: COORDINATES: protein motif:HMM:NF024842.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NAD(P)/FAD-dependent oxidoreductase
translation: MREAWDAVTVGAGPNGLAAALALARNGRRVLVLERAQRAGWGLRTDKSIVPGCVHDHCASVLPLALASPFFRSVGVIDRVHWCWSPAALAHPFDDGTAVLLWRDLERTAVELGPDAPRYRGLMKPWLSAGTVLLAALLSPLPGVVRLPGSRLPLVELLCFAREGVRSARVVIEHFVGERARALFAGLAAHSTLPLEQAPSAAFGLILAACGHLVGWPLLAGGTERLAEALVGEIEQHGGTVRYGVPVERLDDLPPARALLLDSSPRIALRIAGARFTPAYRRQLARFRPGPGVFKIDWVIRGTVPWRAPECALAATVHLGGSWEEIAAAERAVSQGRMPERPFVILVQPGQADPGRAIPDYAVMWAYCHVPSGWDGDATEAIEQQVERFAPGFRERIVARRAWKPGDFERANPNLVGGDLSGGWPTLDQLFTRPAFWPWPPYRTSDPAVFLCSAATPPGGGVHGMCGYWAARWAERWLDRLDRGRLSPASGKPVSKAAVSAELTAR
SIO_010081: TRD_RS02310
subclass of: SO_0000673
so part of: TRD_RS02310
location: 497077..498597
location: region:497077-498597:1
so has part: feature:497077-498597:1:exon

WP_012641905.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:497077-498597:1:exon

regulatory
type: Feature
subclass of: SO_0000001
RO_0002162: 309801
regulatory class: riboswitch
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF00050
inference: COORDINATES: profile:INFERNAL:1.1.4
note: FMN riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
bound moiety: flavin mononucleotide
so part of: sequence
location: 498620..498769
location: region:498620-498769:1
so has part: feature:498620-498769:1:region

position:498620:1
position: 498620
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:498769:1
position: 498769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:498620-498769:1:region

TRD_RS02315
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: ribD
locus tag: TRD_RS02315
old locus tag: trd_0502
so part of: sequence
location: 498862..500007
location: region:498862-500007:1
so has part: feature:498862-500007:1:exon
subclass of: SO_0000010

position:498862:1
position: 498862
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:500007:1
position: 500007
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:498862-500007:1:exon

TRD_RS02315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: ribD
locus tag: TRD_RS02315
old locus tag: trd_0502
EC number: 1.1.1.193
EC number: 3.5.4.26
inference: COORDINATES: protein motif:HMM:TIGR00326.1
GO function: GO:0008703 - 5-amino-6-(5-phosphoribosylamino)uracil reductase activity [Evidence IEA]; GO:0008835 - diaminohydroxyphosphoribosylaminopyrimidine deaminase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
translation: MQELDTDRYWMQRAIALARRAQGRVAPNPAVGAVIVREGEVVGEGCTQPPGGPHAEIVALQRAGERARGATLYVTLEPCAHYGRTPPCVEAIVQAGIRRVVAAILDPFPAVAGRGFTLLRQAGVDVTVGIEAEAAAEVNAGYLKRLRESLPEVTLKYAMTLDGHIATRTGHSKWITGQEARRYAHQLRDQHDAILVGVETVLTDDPELTTRLDPRDAGDGGPHSPLRVVIDTRARTPPSARLLDSRLPARTLVITTEAAPPERVAALWKAGAELAFVPLRCGHVDLAAALRVLAERGINRVLVEGGGRVLGSLFEQGLADAVVAFIAPVLVGGTAAPVPLAGEGVARMEDAPRLTGVRVRQVGDDLVIEGRLRPIWVPEGA
SIO_010081: TRD_RS02315
subclass of: SO_0000673
so part of: TRD_RS02315
location: 498862..500007
location: region:498862-500007:1
so has part: feature:498862-500007:1:exon

WP_041435921.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:498862-500007:1:exon

TRD_RS02320
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02320
old locus tag: trd_0503
so part of: sequence
location: 500004..500672
location: region:500004-500672:1
so has part: feature:500004-500672:1:exon
subclass of: SO_0000010

position:500004:1
position: 500004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:500672:1
position: 500672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:500004-500672:1:exon

TRD_RS02320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02320
old locus tag: trd_0503
EC number: 2.5.1.9
inference: COORDINATES: protein motif:HMM:TIGR00187.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: riboflavin synthase
translation: MMFTGIVEEIGRVLAIQPVSGGGLRLRIGCRTVVEGTRLGDSIAVDGVCLTVTDLAPDSFQVELQPVTVRRSTLGRIAVGDLVNLERALPVGGRFGGHYVQGHVDTVGRIVMMYRDGAALIVRIAAPAEAMRYVVERGFIAVDGASLTVQRRFPSEFEVSLVAYTQEHITLPRKRPGALVNLEVDIIAKYVEQFLALGASGALSLESLHRAGFVSARTEVES
SIO_010081: TRD_RS02320
subclass of: SO_0000673
so part of: TRD_RS02320
location: 500004..500672
location: region:500004-500672:1
so has part: feature:500004-500672:1:exon

WP_012641907.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:500004-500672:1:exon

TRD_RS02325
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02325
old locus tag: trd_0504
so part of: sequence
location: 500669..501922
location: region:500669-501922:1
so has part: feature:500669-501922:1:exon
subclass of: SO_0000010

position:500669:1
position: 500669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:501922:1
position: 501922
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:500669-501922:1:exon

TRD_RS02325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02325
old locus tag: trd_0504
EC number: 3.5.4.25
EC number: 4.1.99.12
inference: COORDINATES: protein motif:HMM:NF006803.0
GO function: GO:0008686 - 3,4-dihydroxy-2-butanone-4-phosphate synthase activity [Evidence IEA]; GO:0003935 - GTP cyclohydrolase II activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II
translation: MTRFARVERAIEAFRAGRFVIIVDDADRENEGDLAIAAQFCTPEAVNFMAREARGLICVPMAAEWVDRLGLPLMVPPGTNGSRFGTAFTISVEAREGVATGISAYDRSVTIRKLADPSATLADFVMPGHVFPLRARPGGVLERDGQTEASVDLARLAGVHPVAVVCEIMSADGTMARLPELERFAAEHDIPLVHVADLIAYRLVHERPAQCVAETTLPTRYGRFQLRAYRRLGGDQIDLALVHGDVSGDEPVLVRLHSECLTGDVFGSQRCDCGPQLEAALDRIAAVGRGVIVYLRQEGRGIGLLNKLRAYHLQDMGLDTVEANLHLGFPADLRDYREAAIILRDLGIERVRLLTNNPRKIAALEELGFEIVERVPLELPPTEHNHRYLRTKRDKLGHLVLLEELAAVGDEKRGGTR
SIO_010081: TRD_RS02325
subclass of: SO_0000673
so part of: TRD_RS02325
location: 500669..501922
location: region:500669-501922:1
so has part: feature:500669-501922:1:exon

WP_012641908.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:500669-501922:1:exon

TRD_RS02330
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: ribE
locus tag: TRD_RS02330
old locus tag: trd_0505
so part of: sequence
location: 501919..502434
location: region:501919-502434:1
so has part: feature:501919-502434:1:exon
subclass of: SO_0000010

position:501919:1
position: 501919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:502434:1
position: 502434
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:501919-502434:1:exon

TRD_RS02330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: ribE
locus tag: TRD_RS02330
old locus tag: trd_0505
EC number: 2.5.1.78
inference: COORDINATES: protein motif:HMM:NF000812.0
GO component: GO:0009349 - riboflavin synthase complex [Evidence IEA]
GO function: GO:0000906 - 6,7-dimethyl-8-ribityllumazine synthase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 6,7-dimethyl-8-ribityllumazine synthase
translation: MMSLNGQAIRVVEGKLTGRGRRFAIVVSRFNEFISRQLLHGAIDALVRHDVEPQAIEVVWVPGSFEIPLVAKRLAESRRYHAVICLGAVIRGATPHFDYVAAEVSKGIAHVALQTNVPVVFGVLTTDTIEQAVERAGTKMGNKGAEAALVAIEMANVLAELDRLAVTPLEA
SIO_010081: TRD_RS02330
subclass of: SO_0000673
so part of: TRD_RS02330
location: 501919..502434
location: region:501919-502434:1
so has part: feature:501919-502434:1:exon

WP_012641909.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:501919-502434:1:exon

TRD_RS13490
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS13490
old locus tag: trd_0506
so part of: sequence
location: 503041..504690
location: region:503041-504690:1
so has part: feature:503041-504690:1:exon
subclass of: SO_0000010

position:503041:1
position: 503041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:504690:1
position: 504690
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:503041-504690:1:exon

TRD_RS13490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS13490
old locus tag: trd_0506
EC number: 3.4.-.-
inference: COORDINATES: protein motif:HMM:NF012970.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: D-alanyl-D-alanine carboxypeptidase family protein
translation: MSGRIVRCVLGLLIVALAIPIPVRADSLPEVVAQHWIIMDAETGQIVAERAARQPVAIASLTKVMTAVVALERGALDQPVTIVPEDLIGESSAGLRAGQVVTLRTLLYGLLLRSGNDAAMAIARAVGGSPDAEDPAARQRFVTWMNAKAVELGLQATSFRNPHGLDEPGHVSSAYDLARLTRVALADPVFVEIFGAASYHGEGFSWRHTNRLPERYPGIIGGKTGWTDEAGLCLIEVAERAGKTAIVVLTGSTLAAWYDDAAKLLDYGWTKLDRLTGSADAERLFDWWWRRTEDPVARGLVVRTWLWGPALGPVEWEAYADAPDGKRLVRYYEKGRMELTHPDRAVDARWRVTGGRLAWELLTGWQQIGDETYVQRKPAAIAVAGDPGNPVTYALLGTMLAAPSGPADEPVTARLFPDGTVVHDVELARYGVRYGAVFRETNHSVASIFANWLEQRGSVWAGYRLREEPLFSPWIAVVGYPITEPYWVRVPVRGVEQDVLVQCFERRCLTFTPANPPGWQVEMGNIGVHYRQWVQRDRGVLLQNLSRSS
SIO_010081: TRD_RS13490
subclass of: SO_0000673
so part of: TRD_RS13490
location: 503041..504690
location: region:503041-504690:1
so has part: feature:503041-504690:1:exon

WP_012641910.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:503041-504690:1:exon

TRD_RS02340
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02340
old locus tag: trd_0507
so part of: sequence
location: complement(504765..505589)
location: region:504765-505589:-1
so has part: feature:504765-505589:-1:exon
subclass of: SO_0000010

position:504765:-1
position: 504765
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:505589:-1
position: 505589
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:504765-505589:-1:exon

TRD_RS02340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02340
old locus tag: trd_0507
inference: COORDINATES: protein motif:HMM:NF014625.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PIG-L family deacetylase
translation: MCELTADAIFLSPHFDDVPLSCGGTVALFAASGRKPVILTLFGGEPSEPLSFFAQQQHRWRGMDDRTAVQLRREEERAAAAELGATAHWFDVPDAIYRDARYNSDDELFGPLHPDDLVLVDELLDLVEEVIRSHAESPAIFVPLALGNHVDHQIARLLGTRLVERGFSVWAYEDQPYSAMPGSQAERDCTIQRWTAGPPWLVFLSEELFQRRLRAISHYRSQIAFVFRDLGPFDRVLRSYTLEVGRGQLAERFWELQPLSTVERAPEQRRGELC
SIO_010081: TRD_RS02340
subclass of: SO_0000673
so part of: TRD_RS02340
location: complement(504765..505589)
location: region:504765-505589:-1
so has part: feature:504765-505589:-1:exon

WP_052294042.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:504765-505589:-1:exon

TRD_RS02345
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: selB
locus tag: TRD_RS02345
old locus tag: trd_0508
so part of: sequence
location: complement(505582..507474)
location: region:505582-507474:-1
so has part: feature:505582-507474:-1:exon
subclass of: SO_0000010

position:505582:-1
position: 505582
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:507474:-1
position: 507474
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:505582-507474:-1:exon

TRD_RS02345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: selB
locus tag: TRD_RS02345
old locus tag: trd_0508
inference: COORDINATES: protein motif:HMM:TIGR00475.1
GO function: GO:0003746 - translation elongation factor activity [Evidence IEA]
GO process: GO:0001514 - selenocysteine incorporation [Evidence IEA]; GO:0006414 - translational elongation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: selenocysteine-specific translation elongation factor
translation: MARQTFVIGTAGHVDHGKSTLVKALTGIDPDRLREEKEREMTIDLGFAWMTLPSGRRLSIVDVPGHERFIKNMLAGVGGFDAALLVVAADEGPMPQTREHVAILDLLEIRHGLVALTKSDLVEPDWLELVIVEVEELLRDTALAGVPIVPVSAVTGYGLDALVRVIDQVLDQVPPHARSGKPRLAIDRVFTVAGFGTVVTGTLRDGELEVGQEVEILPRGLRARVRGLQSHRTRVDRALPGSRTAVNLSGVEVEDLVRGDVLTVPGWLRPTMLLDARLRMLPDAPEPLEQNDEVDFFVGASETLARVTLLDAERLEPGMVGWVQLRLQEPVVAVRGDRFIIRRPSPSATLGGGIIIDTAPRRHRRFRPEILRTLELLASGSPEALVLHALERGIAEWRDVLQRTNLDETTATRAITQLIQQGQIVCLENAEGALNPGSALAERTALERITAQLLDLLRDYHARYPLRRGLPREMARSRLGLSPRFFELLVHWLTQAGAVIQDDDVLRLPEHRIQLTEEQENRARAYEAALLREPFSPPSPSEYGIEPELVQALADLGRVVRVNDEVVFAPSAWAEIKKRVLALIDAHGSVTLAQVRDALGTSRKYAQALLEYLDQQRVTRRIGDARVRYV
SIO_010081: TRD_RS02345
subclass of: SO_0000673
so part of: TRD_RS02345
location: complement(505582..507474)
location: region:505582-507474:-1
so has part: feature:505582-507474:-1:exon

WP_012641912.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:505582-507474:-1:exon

TRD_RS02350
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02350
old locus tag: trd_0510
so part of: sequence
location: 507559..508482
location: region:507559-508482:1
so has part: feature:507559-508482:1:exon
subclass of: SO_0000010

position:507559:1
position: 507559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:508482:1
position: 508482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:507559-508482:1:exon

TRD_RS02350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02350
old locus tag: trd_0510
inference: COORDINATES: protein motif:HMM:NF015056.2
GO function: GO:0016811 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: acetamidase/formamidase family protein
translation: MSVSPYRIPRSSRYAALDATALPALRVETGAVVEFETSDEPYEMLARGILVEEIGLDRFNQVTGPLAVKGARPGDTLRVDILSISIERAWLVFIRSFGPLGRLLPKTVCERLDVHGGRLVVSERLQLPLRPSIGCIGVAPARGASSTFRPVWPWGGNLDLVELHAGSTIWLPVQRPEAFLFLGDVHAAIGAGEPAHVAIEAAARVTVQVAVDHRLRLPGPLVRSDDELLVFGLGPDISSAQQAALENAVALVRRAFELTTREAYAFVCACLSYRFGGPAGPVVVAALPLAPVTQLSGSAIPSWLASS
SIO_010081: TRD_RS02350
subclass of: SO_0000673
so part of: TRD_RS02350
location: 507559..508482
location: region:507559-508482:1
so has part: feature:507559-508482:1:exon

WP_012641913.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:507559-508482:1:exon

TRD_RS02355
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02355
old locus tag: trd_0509
so part of: sequence
location: complement(508437..510500)
location: region:508437-510500:-1
so has part: feature:508437-510500:-1:exon
subclass of: SO_0000010

position:508437:-1
position: 508437
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:510500:-1
position: 510500
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:508437-510500:-1:exon

TRD_RS02355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02355
old locus tag: trd_0509
inference: COORDINATES: protein motif:HMM:NF015168.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: thioredoxin domain-containing protein
translation: MPNRLANEKSLYLRQHADNPVDWYPWCEEAFRVAREQDKPILLSIGYSSCHWCHVMERECFENPEIAQLQNELFVNIKVDREERPDLDELYMNALQAMTGSGGWPLNVFLTPDGKPFYGGTYFPPEDRGQLPAWPRVLLAVAQAYRERRADVERAAEDLVSYLQQQSRPPLQAAPLREQFLDEAARNLVPHYDREHGGFGTAPKFPSPLQLEFLLRTFRRAGAPRALEMVLQTLTAMARGGIHDQIGGGFHRYTVDEAWLVPHFEKMLYDNALLARVYTLAHLASGNRLCRTIAEETLVYIQREMRGDHGAFFAAQDADSEEGEGAFYLWTPEEIAAVLGNDDAGLACRYFGVTPRGNFEGKSILHVAEDPVTIASEFGLSLDELEQRIGSIRARLYEARDQRPHPARDEKVIVAWNALAIRAFAEAGTALDRPDFVALAERAATFLRDQLWDGKTLYHVWEEGEARFPGFLDDYADLVNALVSLYEATFDPFWIAWARQLTEAILAKFIDPVAGDFYDTASDGEQLIVRPKTFIDQGTPSGNGATAEALLRLGTLLGEHRFIDQARTLLERYAQLAVEHPIACGQLLLAMDFALGQPFEVAIIGDPTQPETRALLRVVQASYLPNRVLALRRPEDEIAASIVPLLAERSLVDGHPAAYVCRNFACQRPVTTPQELASQLGIALPDS
SIO_010081: TRD_RS02355
subclass of: SO_0000673
so part of: TRD_RS02355
location: complement(508437..510500)
location: region:508437-510500:-1
so has part: feature:508437-510500:-1:exon

WP_012641914.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:508437-510500:-1:exon

TRD_RS02365
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02365
old locus tag: trd_0512
so part of: sequence
location: 511057..511686
location: region:511057-511686:1
so has part: feature:511057-511686:1:exon
subclass of: SO_0000010

position:511057:1
position: 511057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:511686:1
position: 511686
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:511057-511686:1:exon

TRD_RS02365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02365
old locus tag: trd_0512
inference: COORDINATES: protein motif:HMM:NF019533.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF1684 domain-containing protein
translation: MEAKGACKVTRSAEATEAYIRRIEEYRKRRDEFFKSNENSPLLPEQRERFRGLRYYPVKPEYRFVVELQRDGVSQERVILGTTTGEPKEFIVAGRVTVEIEGKPVTFTVYREVGRGRYFLPFRDATAGSETYSVGRYLDPQETPDGKLVIDFNMAYNPYCAYNDRWTCPIPPRENIVDVPIRAGEMAYPDYVSITEQEKPSGPMPLIGG
SIO_010081: TRD_RS02365
subclass of: SO_0000673
so part of: TRD_RS02365
location: 511057..511686
location: region:511057-511686:1
so has part: feature:511057-511686:1:exon

WP_012641916.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:511057-511686:1:exon

TRD_RS02370
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02370
old locus tag: trd_0513
so part of: sequence
location: 511688..513181
location: region:511688-513181:1
so has part: feature:511688-513181:1:exon
subclass of: SO_0000010

position:511688:1
position: 511688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:513181:1
position: 513181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:511688-513181:1:exon

TRD_RS02370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02370
old locus tag: trd_0513
EC number: 3.4.11.1
inference: COORDINATES: protein motif:HMM:NF002073.0
GO function: GO:0030145 - manganese ion binding [Evidence IEA]; GO:0070006 - metalloaminopeptidase activity [Evidence IEA]
GO process: GO:0006508 - proteolysis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: leucyl aminopeptidase
translation: MGLEVTASTTPLAVVEATVVLPIGQDGQLERIAGIEPGVAERLARAARSIGLAGRVGQAGLLPPIDGLAAERFIVVGMGAEHQRSLADVRRGAALAGKLAGEVGASVLAWPIVAVSGSSSAQVVQAIVETTAMASYRFHRYRSGEGGTRLRQLVVLGEGAEVEEGIQRGRLTSDAVCFARDLTNEPANVLDPERLSGIAWEIAQETGLACSVYDRALLEELGAGAILAVGQGSRREPRLIHLVYRPDGDVLGRVALVGKAVTFDSGGLSLKPAEGMERMKGDMAGGAAVLAVLRALPALRLPVEVHGVVAAAENLPDGEAFRPGDILRTLSGKTVEVISTDAEGRLLLADALTFAVQQGADLLVDIATLTGACAVALGRSGSGLFASDDSVGQLILQAANEVGERMWALPLWDDYRELLKSEHADLKNTAGRWGAAINAALFLREFTEGRPWAHLDIAGPAWSEQATLFGPAGATGHGVRTLLRFVELWAERRGAAE
SIO_010081: TRD_RS02370
subclass of: SO_0000673
so part of: TRD_RS02370
location: 511688..513181
location: region:511688-513181:1
so has part: feature:511688-513181:1:exon

WP_012641917.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:511688-513181:1:exon

TRD_RS02375
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02375
old locus tag: trd_0514
so part of: sequence
location: 513178..513603
location: region:513178-513603:1
so has part: feature:513178-513603:1:exon
subclass of: SO_0000010

position:513178:1
position: 513178
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:513603:1
position: 513603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:513178-513603:1:exon

TRD_RS02375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02375
old locus tag: trd_0514
inference: COORDINATES: protein motif:HMM:NF014009.2
GO component: GO:0005737 - cytoplasm [Evidence IEA]
GO function: GO:0003824 - catalytic activity [Evidence IEA]
GO process: GO:0008150 - biological_process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: secondary thiamine-phosphate synthase enzyme YjbQ
translation: MSRAFARRFQVATGGRDQMLDLTPQVRETVEASGIREGLVCVFVAHSTAAVSVSEYEPGLMQDVRIVAERIAPQGAAYAHNRLNADDNAHSHLRSLVVGPSVTVPLVSGELTLGTWQRIVLLDFDTHPRTRTVWVQVLGAT
SIO_010081: TRD_RS02375
subclass of: SO_0000673
so part of: TRD_RS02375
location: 513178..513603
location: region:513178-513603:1
so has part: feature:513178-513603:1:exon

WP_012641918.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:513178-513603:1:exon

TRD_RS13495
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS13495
old locus tag: trd_0515
so part of: sequence
location: 513593..513943
location: region:513593-513943:1
so has part: feature:513593-513943:1:exon
subclass of: SO_0000010

position:513593:1
position: 513593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:513943:1
position: 513943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:513593-513943:1:exon

TRD_RS13495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS13495
old locus tag: trd_0515
inference: COORDINATES: protein motif:HMM:NF024949.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MRRDVVRTIAELLTDLRARRGWPLRELAQRSGLSIAYLSELERGRKLPTLEALDQLAAAFDCNLAAFLRLLADRLEEPTTEVRHDAEFQDLDPAERSELACYAEYLRWRRSHCVQR
SIO_010081: TRD_RS13495
subclass of: SO_0000673
so part of: TRD_RS13495
location: 513593..513943
location: region:513593-513943:1
so has part: feature:513593-513943:1:exon

WP_012641919.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:513593-513943:1:exon

TRD_RS02385
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02385
old locus tag: trd_0517
so part of: sequence
location: 513970..514854
location: region:513970-514854:1
so has part: feature:513970-514854:1:exon
subclass of: SO_0000010

position:513970:1
position: 513970
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:514854:1
position: 514854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:513970-514854:1:exon

TRD_RS02385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02385
old locus tag: trd_0517
inference: COORDINATES: protein motif:HMM:NF012790.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: sulfurtransferase
translation: MSERLTAHFVDTGWLAERLGNPLVRIVDCRYYFDGRDGYEEYRKGHIPGARYLDWTVVTVDPHDPVAYRLAPSQYIAGRLGELGIGDEHLIVGYDDEGGHFVARLWLALAYYGKADRLRILEGGWTRWVAEGRSTATDEPVWPRAAFHLPSTPVHPELVADARDVLEALAFGKSVVLDVRRLSEYTGEEVRARHGGHVPGARHWFWQRSLDWDGLRMFRPPEEVRAGLAELGVTTSTPVITYCHGGVRAAHAALALARAGFRHVRVYVGSWAEWGNRDDLPRALGLPHGDGRES
SIO_010081: TRD_RS02385
subclass of: SO_0000673
so part of: TRD_RS02385
location: 513970..514854
location: region:513970-514854:1
so has part: feature:513970-514854:1:exon

WP_226980711.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:513970-514854:1:exon

TRD_RS02390
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02390
old locus tag: trd_0516
so part of: sequence
location: complement(514849..515475)
location: region:514849-515475:-1
so has part: feature:514849-515475:-1:exon
subclass of: SO_0000010

position:514849:-1
position: 514849
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:515475:-1
position: 515475
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:514849-515475:-1:exon

TRD_RS02390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02390
old locus tag: trd_0516
inference: COORDINATES: protein motif:HMM:NF024880.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: class I SAM-dependent methyltransferase
translation: MHDQRTVRELARQYDRLAGQYDAAMDRIERWLLGDWRAWAAHQAIGWTLEIAIGTGRTLPSYRPGIVLVGIDVSLGMLRVAHRRARAHGRPVTLLRADAQALPLRDASVDTVLSILSLCTIPDVQQALREAYRVLRPGGRLILVEHVRSDRRLLGLAQRLIEPLSVRFAHDHLAREPLPMVVANGFQVLQEQRRLAGIVQRILAVKPS
SIO_010081: TRD_RS02390
subclass of: SO_0000673
so part of: TRD_RS02390
location: complement(514849..515475)
location: region:514849-515475:-1
so has part: feature:514849-515475:-1:exon

WP_012641921.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:514849-515475:-1:exon

TRD_RS02395
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02395
old locus tag: trd_0518
so part of: sequence
location: 515563..516075
location: region:515563-516075:1
so has part: feature:515563-516075:1:exon
subclass of: SO_0000010

position:515563:1
position: 515563
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:516075:1
position: 516075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:515563-516075:1:exon

TRD_RS02395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02395
old locus tag: trd_0518
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MWLIVPVIFLLSWRMTRRWGQALNETVAWIVGYLATAGVLWLTDVGGLDLVETRPNSPGAILAILGGFLGMLVSRWRWKRRGGHLEPRTDWRKALIRGAARVSARRSAGGGTAAGSRTGSAVGSDVAAIAGRLLGRAAANLFVPEMRRRNPWFRAMRALISPDEARQRRQ
SIO_010081: TRD_RS02395
subclass of: SO_0000673
so part of: TRD_RS02395
location: 515563..516075
location: region:515563-516075:1
so has part: feature:515563-516075:1:exon

WP_012641922.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:515563-516075:1:exon

TRD_RS02400
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02400
old locus tag: trd_0519
so part of: sequence
location: 516094..516717
location: region:516094-516717:1
so has part: feature:516094-516717:1:exon
subclass of: SO_0000010

position:516094:1
position: 516094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:516717:1
position: 516717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:516094-516717:1:exon

TRD_RS02400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02400
old locus tag: trd_0519
inference: COORDINATES: protein motif:HMM:NF014069.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HDIG domain-containing protein
translation: MGVERSLPTREEAWQLVREFTSQPHLLRHMRAVEAAMRAYARRFGENEELWGLVGILHDFDYERYPDISTEGHPVVGARILRERGYPEEVIRAILAHASEVTGVEPESLLEKTLVAVDELTGFLVAVALVRPTKSILDVEVSSVKKKWKAKEFAAAVNRQEIERAAAALGVPLEEHIRIVLDAMKEIAHELGLERRPVEAARPALEG
SIO_010081: TRD_RS02400
subclass of: SO_0000673
so part of: TRD_RS02400
location: 516094..516717
location: region:516094-516717:1
so has part: feature:516094-516717:1:exon

WP_041435923.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:516094-516717:1:exon

TRD_RS02405
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02405
old locus tag: trd_0520
so part of: sequence
location: complement(516833..518038)
location: region:516833-518038:-1
so has part: feature:516833-518038:-1:exon
subclass of: SO_0000010

position:516833:-1
position: 516833
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:518038:-1
position: 518038
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:516833-518038:-1:exon

TRD_RS02405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02405
old locus tag: trd_0520
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015922099.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: spermidine/putrescine ABC transporter substrate-binding protein
translation: MNRPELIQRWIRDWQQGRLSRRELLRRVTLLGMSSFALANLLTACARSQPTPTPASTEASPRVGAAIPDYIDRSKLDKELNFYNWSEYIDPDILTEFQETYGVKVTMDTYASNEDLLAKLQGGATGYDVIVPSDYMVSIMINLGLLEPLDYSVIKTIANIDPENLKPYYDPDNTYSVPYMWGTSGYSYDTSVLGEDLASWKEVFEPRPEVRGKVVMLDDQREVIGAALMYLGYEINETSDDALAKAKQLLLTQKPYVLAYSSQNNDDLLVAGEALIAHIWTGDALMSEQEKPTLRYVIPTEGCTVWQDNLCVPKTAPHKYTAMVFIDFLNRPDIAGRNANYIMYGSPNKAAREQGYIDQEVLNNPGVYPPPEVWKRLQWIKDVGEEGALKLDRLWTEIKTG
SIO_010081: TRD_RS02405
subclass of: SO_0000673
so part of: TRD_RS02405
location: complement(516833..518038)
location: region:516833-518038:-1
so has part: feature:516833-518038:-1:exon

WP_012641924.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:516833-518038:-1:exon

TRD_RS02410
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02410
old locus tag: trd_0521
so part of: sequence
location: complement(518054..518905)
location: region:518054-518905:-1
so has part: feature:518054-518905:-1:exon
subclass of: SO_0000010

position:518054:-1
position: 518054
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:518905:-1
position: 518905
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:518054-518905:-1:exon

TRD_RS02410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02410
old locus tag: trd_0521
inference: COORDINATES: protein motif:HMM:NF012738.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter permease
translation: MATARPATTMRSKRRFSFGWAVLNLNVLLTFIFLYAPIIVMSIFSFNASRQMQVWMGFTLDWYARMIADERVRVAAQNSLVIALVSTIVSTVIGTLSALALERTRFRVKRMYEAAMYLPIIVPEIVMAIALLVFFNLAFTWLDQFFGLKLKFGLGTITIAHIAFSFPFVAVVVRARLADFDRTLEQAAQDLGANEWQTFRHITLPLLMPGIIAGALLAFTLSIDDFVITFFTAGVGSTTLPLEIYGRVRRGITPDVNALSTVMLLASIVLVLGSLLFQRRRSF
SIO_010081: TRD_RS02410
subclass of: SO_0000673
so part of: TRD_RS02410
location: complement(518054..518905)
location: region:518054-518905:-1
so has part: feature:518054-518905:-1:exon

WP_041436372.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:518054-518905:-1:exon

TRD_RS02415
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02415
old locus tag: trd_0522
so part of: sequence
location: complement(518911..519825)
location: region:518911-519825:-1
so has part: feature:518911-519825:-1:exon
subclass of: SO_0000010

position:518911:-1
position: 518911
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:519825:-1
position: 519825
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:518911-519825:-1:exon

TRD_RS02415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02415
old locus tag: trd_0522
inference: COORDINATES: protein motif:HMM:NF012738.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter permease
translation: MSAIDRVRVQERSLGWHERASERIRQSERVRALFLAGPGGLWLLLFFLLPTAIVFAYSFARRGPYGAVAWAFTLENYARLFDWLYIRVFLMSVWLALLTTVICLVIGYPFAFVIARSPRRWRNALLVLVLIPFWTNFLVRTYAIMLLLRADGLINNALQWLGLIDRPLSLLFTPFAVVLGLVYGYLPFMILPIYASIEKFDFTLVEAAQDLGANAWHVFWRVLLPLTLPGVLAGSILVFIPSVGAFVTPDLLGGGKVVMIANLINQQFLTVRHWPFGSAISFVLMAIVLAATMLYFRIGETRRI
SIO_010081: TRD_RS02415
subclass of: SO_0000673
so part of: TRD_RS02415
location: complement(518911..519825)
location: region:518911-519825:-1
so has part: feature:518911-519825:-1:exon

WP_012641926.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:518911-519825:-1:exon

TRD_RS02420
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02420
old locus tag: trd_0523
so part of: sequence
location: complement(519844..521007)
location: region:519844-521007:-1
so has part: feature:519844-521007:-1:exon
subclass of: SO_0000010

position:519844:-1
position: 519844
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:521007:-1
position: 521007
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:519844-521007:-1:exon

TRD_RS02420
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02420
old locus tag: trd_0523
inference: COORDINATES: protein motif:HMM:TIGR01187.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter ATP-binding protein
translation: MTPTILAIETVCASGMGGMEPLERPIDVELLDVTKVFENGVVAVDRVSLQIYQGEFFSLLGPSGCGKTTTLRMIAGFEHPSAGEVLIEGRRMGHTPPFRRNVNTVFQNYALFPHMTVFDNVAFGLRMKRIPRDEIARRVREALHLVRLSGMEERYPRQLSGGQQQRVALARALVNRPRVLLLDEPLGALDLKLRKEMQLELKHLQMTVGITFIYVTHDQEEALTMSDRIAVMNAGRVLQVGTPMEIYERPASRFVADFIGESNFLRGTVQAASSAAATVVIADRFPVEVPADRQLTVGQQVTVAVRPEKVRLVPIEAPGTNGLLHGRIEEVIYIGTDTFYVVRVSDDTTIRVRSQNDRNRLDGGLLLPVGTPVSLTWATDAARILTE
SIO_010081: TRD_RS02420
subclass of: SO_0000673
so part of: TRD_RS02420
location: complement(519844..521007)
location: region:519844-521007:-1
so has part: feature:519844-521007:-1:exon

WP_226980712.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:519844-521007:-1:exon

TRD_RS02425
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02425
old locus tag: trd_0524
so part of: sequence
location: complement(521015..522469)
location: region:521015-522469:-1
so has part: feature:521015-522469:-1:exon
subclass of: SO_0000010

position:521015:-1
position: 521015
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:522469:-1
position: 522469
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:521015-522469:-1:exon

TRD_RS02425
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02425
old locus tag: trd_0524
inference: COORDINATES: protein motif:HMM:TIGR01499.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
GO process: GO:0009058 - biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Mur ligase family protein
translation: MSEASVPDARYRWATGYLRALIQAPPGPPPGTPPEIVRLRAQRRLERLRDFLAYLGNPHRVYPVIHITGTSGKGSTAAFIANILHVAGYRTGLHTSPYLQVETEKLQIAGQLIAPERFAEEVAILDQAVRSWIARGGQPLTYGEFWTALVFQTLRSERVDVAVIEVSVGGRFDLTNVVLPEVAVITTVGLDHVRTLGPTIRDIAWHKAGIIKPGRPAITGVTDPELLAIIAAEADAVGASLTVVREGSDYWVTSTGLGTTLTDLRTGHTFPIGLLGSYQARNAALAIAAIRTFADRIGGRIDDETIARGLVTTRFPGRFEIIQETPLVILDGAHNPQKMAALLEALDALSVQGRRLALFGVLEGHDALTMATMLAKSVDMVVLTTPRAFLRTAADPVELAAACQAQGTHAVTVDDPAEALALVLEMAQPNDLIVVTGSLYLVGHVREHWYPSSLIVTQRTCWPIRRSIAIQGAESACRQQHGSV
SIO_010081: TRD_RS02425
subclass of: SO_0000673
so part of: TRD_RS02425
location: complement(521015..522469)
location: region:521015-522469:-1
so has part: feature:521015-522469:-1:exon

WP_012641928.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:521015-522469:-1:exon

TRD_RS02430
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02430
old locus tag: trd_0525
so part of: sequence
location: 522541..523770
location: region:522541-523770:1
so has part: feature:522541-523770:1:exon
subclass of: SO_0000010

position:522541:1
position: 522541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:523770:1
position: 523770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:522541-523770:1:exon

TRD_RS02430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02430
old locus tag: trd_0525
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTFREGRDFPAWRFFALGAIGSAVGFGFVAGTLVFAAPLFAISPSRIAQLVSLHGHGQLYGFVLALTIGVACWFLPRLWGRPQRGVPWLVGMFLFSGLLLRVFGSILDRPRLALVGGGLEFVAFVQAGWDLTRSVVQAPLAGKARDPALAVGVIVAVVALPMGLAADLCAMVGICSSGRVVSVLVGFYGAAVPIALAMTGRLFPLYFWTRVPHRRYLAWALMITTGGLWWRVGAFVAEWSYGVRFGCALQGAGLVGAIVALRLLEPRQVRPAAKRSLWQDPYAWLAALAYTALGADALLLLGATFRGVLSAPALEWHLVGVGYLMVLITAVGPLLLAVFAGERTGATWPGWVILGSVLMTASLRIGAALAPGEAARWAGAAAGLIGATTVLLFAWHARILSLRRSRRAL
SIO_010081: TRD_RS02430
subclass of: SO_0000673
so part of: TRD_RS02430
location: 522541..523770
location: region:522541-523770:1
so has part: feature:522541-523770:1:exon

WP_012641929.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:522541-523770:1:exon

TRD_RS02435
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: apbC
locus tag: TRD_RS02435
old locus tag: trd_0526
so part of: sequence
location: 523845..524936
location: region:523845-524936:1
so has part: feature:523845-524936:1:exon
subclass of: SO_0000010

position:523845:1
position: 523845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:524936:1
position: 524936
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:523845-524936:1:exon

TRD_RS02435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: apbC
locus tag: TRD_RS02435
old locus tag: trd_0526
inference: COORDINATES: protein motif:HMM:NF008669.0
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
GO process: GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: iron-sulfur cluster carrier protein ApbC
translation: MSELTRERVLEALRPVQDPELHRSLVDLGMIKEVTIEGASVRVQVELTTPACPLRERIREDVERAVRALPGVQTVEVGFSSRVRAAGTGLPDRQPIPGVKNTIAVASGKGGVGKSTVAVNLAVALAQEGATVGLLDADVYGPSIPLMLGAEEQPGLVDNKIIPGRAYGIAVMSVGYILDPEKALIWRGPLVSQLIRQFLSDVQWGDLDYLVIDLPPGTGDVQLTLVQTIPLSGAIIVTTPQDVALADAIKGLQMFREVKTPVLGIVENMSYFVCPHCGHVAEIFGSGGGERVANKYGVPLLGQIPIDPAVREGGDRGVPVVVGQPGSSTAQAFREAARQAAARLSVEAVKKPRKPVMMLQPKR
SIO_010081: TRD_RS02435
subclass of: SO_0000673
so part of: TRD_RS02435
location: 523845..524936
location: region:523845-524936:1
so has part: feature:523845-524936:1:exon

WP_012641930.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:523845-524936:1:exon

TRD_RS02440
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: fabF
locus tag: TRD_RS02440
old locus tag: trd_0527
so part of: sequence
location: 525008..526384
location: region:525008-526384:1
so has part: feature:525008-526384:1:exon
subclass of: SO_0000010

position:525008:1
position: 525008
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:526384:1
position: 526384
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:525008-526384:1:exon

TRD_RS02440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: fabF
locus tag: TRD_RS02440
old locus tag: trd_0527
EC number: 2.3.1.179
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012642981.1
GO function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity [Evidence IEA]
GO process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: beta-ketoacyl-ACP synthase II
translation: MRCRWCGGEVPKGARYCPWCGRARTAEASGGRRRVVITGLGAVTPLGLSVEETWQRILRGESGIQRIERFDPSDLPVQIAGEVRGFVLGDWVDAKTARQMAMFSQYALEAAGQAWRDAGLDSGAIDPARAAVVIGTGAGGMATILETHELAQRRGLLRISPHFMTIFPHNMPAYHLAQAFRFLGPSLTVSTACATGAQAIGEAAEMIRNGAADIALAGGTEYCVFPLFIASFAVQRAASTWNDRPEEASRPFDAERHGFVVGEGAGIVVLEALEHAQARGARIYAELLGYASSNDGYHPIAPDPEGSGAARAIRAALADACVGPEDVDYINAHAASTPLGDRAETQAIKAVFGERAYRIPISSTKSMIGHLMGAAGAVESIVTILSIRDAIVHPTRNYRYPDPECDLDYVPEGPRRHTIRVALKNSFGLGGQNCCLVFAAWDGARGPEQSEPSSLRLE
SIO_010081: TRD_RS02440
subclass of: SO_0000673
so part of: TRD_RS02440
location: 525008..526384
location: region:525008-526384:1
so has part: feature:525008-526384:1:exon

WP_012641931.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:525008-526384:1:exon

TRD_RS02445
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: speB
locus tag: TRD_RS02445
old locus tag: trd_0528
so part of: sequence
location: 526394..527350
location: region:526394-527350:1
so has part: feature:526394-527350:1:exon
subclass of: SO_0000010

position:526394:1
position: 526394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:527350:1
position: 527350
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:526394-527350:1:exon

TRD_RS02445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: speB
locus tag: TRD_RS02445
old locus tag: trd_0528
EC number: 3.5.3.11
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012641933.1
GO function: GO:0008783 - agmatinase activity [Evidence IEA]
GO process: GO:0008295 - spermidine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: agmatinase
translation: MPKGYAPVSGLESPRFAGIRTFARLPHVRELAGVDVAIVGAPFDTGVTYRVGARFGPAAVREMSAMLRTYHPSLDVDVYEVLSVVDYGDLPVVPGYIEDSYQRIEQGLLPLLEHDVVPLVIGGDHSITLAELRAVARRYGRVGFIQFDSHTDTWDEYWGKKYTHGTPFRRAVEEGLIETTRAIQVGMRGSLYGPEDLDQSRELGFEVWTADDVRRTGLGAVIEAIRRRVGQGPVFVSFDIDFLDPVYAPGTGTPEVGGFTTREAQELLRGLVGVDIVAADMVEVLPAHDVSGVTALAAANLLFEILAVLAFNRRGMTR
SIO_010081: TRD_RS02445
subclass of: SO_0000673
so part of: TRD_RS02445
location: 526394..527350
location: region:526394-527350:1
so has part: feature:526394-527350:1:exon

WP_012641932.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:526394-527350:1:exon

TRD_RS02450
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: speB
locus tag: TRD_RS02450
old locus tag: trd_0529
so part of: sequence
location: 527406..528380
location: region:527406-528380:1
so has part: feature:527406-528380:1:exon
subclass of: SO_0000010

position:527406:1
position: 527406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:528380:1
position: 528380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:527406-528380:1:exon

TRD_RS02450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: speB
locus tag: TRD_RS02450
old locus tag: trd_0529
EC number: 3.5.3.11
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012641932.1
GO function: GO:0008783 - agmatinase activity [Evidence IEA]
GO process: GO:0008295 - spermidine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: agmatinase
translation: MDEREDQGRVRWRPRFSGLRTFARFPHRAELAGVDVAIVGIPFDTGVTYRPGARFGPAAVREHSSRIEQYHPPLDVDVTEYLTVIDYGDTPVVPMETLESYQLIEETIRTVVEGGVIPVGIGGDHSVTLPELRAVARRFGPLALVHFDAHVDTWDTIWGTRYNHGTPFRRAVEEGVVDPVRSIQIGIRGSLGERGELEQSRELGFAVWTAWEVRRAGIERVLEAVRQRVGQHPVFVSFDIDFLDPAFAPGTGTPEVGGFAMWEAQELVWGLVGLNIVAADVVEVLPDRDPAGVTALNAANIVFDLLAVLAATRRERHGTAERAE
SIO_010081: TRD_RS02450
subclass of: SO_0000673
so part of: TRD_RS02450
location: 527406..528380
location: region:527406-528380:1
so has part: feature:527406-528380:1:exon

WP_012641933.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:527406-528380:1:exon

TRD_RS02455
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02455
old locus tag: trd_0530
so part of: sequence
location: 528355..528993
location: region:528355-528993:1
so has part: feature:528355-528993:1:exon
subclass of: SO_0000010

position:528355:1
position: 528355
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:528993:1
position: 528993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:528355-528993:1:exon

TRD_RS02455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02455
old locus tag: trd_0530
inference: COORDINATES: protein motif:HMM:NF020905.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: urea carboxylase-associated family protein
translation: MVQPSAPSEHILFGRVPKRAAQVRPTVPIAFPLAEGQLLQITDVQGKQVADMVAFNLHDVREYLSTSHTRAINNSLVLTQGMTLYSNRRNPMLVLLEDTVGRHDILFPACDRRRYLDDYGIPDHPNCKDNFLAALREYGIEEDDIPDPVNWFMNVGIVAKGRFEIREPLSERNDYVLLRALMDLVVAVSACPQDQNPCNAFNPTDILVRIYD
SIO_010081: TRD_RS02455
subclass of: SO_0000673
so part of: TRD_RS02455
location: 528355..528993
location: region:528355-528993:1
so has part: feature:528355-528993:1:exon

WP_012641934.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:528355-528993:1:exon

TRD_RS02460
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: ureC
locus tag: TRD_RS02460
old locus tag: trd_0531
so part of: sequence
location: complement(529000..530700)
location: region:529000-530700:-1
so has part: feature:529000-530700:-1:exon
subclass of: SO_0000010

position:529000:-1
position: 529000
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:530700:-1
position: 530700
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:529000-530700:-1:exon

TRD_RS02460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: ureC
locus tag: TRD_RS02460
old locus tag: trd_0531
EC number: 3.5.1.5
inference: COORDINATES: protein motif:HMM:NF009686.0
GO function: GO:0016151 - nickel cation binding [Evidence IEA]; GO:0009039 - urease activity [Evidence IEA]
GO process: GO:0019627 - urea metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: urease subunit alpha
translation: MPVRIDRQHYARWYGPTAGDRIRLADTNLYARIERDDTLPGFEPLVGFGRPVRDGMLAGRDHGPSKLDLVITNVVVMDPVLGIFKSNIGIKDGRIVAIGRAGNPDVMEDVEVLISNATGIIPAEGLIATPGGVDAHVHLSSTSVVPAALSAGITTLVAQGSGGVWDLGVNPVNNLRHLLEAFETIPLNLAVLGRGSSDTAQLVEHLEAGCAGFKIHEDVGAFPAVIDACLTIADQAGVQVALHTDGLNEAGSLRETIAAIAGRSIHAYHVEGSGGGHAPNILEIVSEPNVIGSSTSPTIPYSVNSTAELLDMIIAVHRLATDIPSDLAAARDRVRASTIAAEDVLHDLGAIAIMSSDSQGMGRIGEVITRTWQLAHRMKEIRGGGYDPASGNGDDNPRILQYLAKYTINPAIAHGLDHEVGSLEPGKLADIVLWHPAFFGAKPAAVIKAGFVAWAPVGDGMGSTRWSQPLIYRPMFGGLGRAPAALSVAFVAPVAATSSHLERSGLQRRLVAVRNVRRVFKNAMRYNTASPRVEVDPRTYAVAINGQVVEIPPAERLPLTFLHFIA
SIO_010081: TRD_RS02460
subclass of: SO_0000673
so part of: TRD_RS02460
location: complement(529000..530700)
location: region:529000-530700:-1
so has part: feature:529000-530700:-1:exon

WP_012641935.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:529000-530700:-1:exon

TRD_RS02465
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02465
old locus tag: trd_0532
so part of: sequence
location: complement(530709..531098)
location: region:530709-531098:-1
so has part: feature:530709-531098:-1:exon
subclass of: SO_0000010

position:530709:-1
position: 530709
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:531098:-1
position: 531098
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:530709-531098:-1:exon

TRD_RS02465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02465
old locus tag: trd_0532
inference: COORDINATES: protein motif:HMM:NF012902.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: urease subunit beta
translation: MSEHPVPPGGIIPGPDPIEIDARLPVTRLRITNRGTVPIHLTAHFHVFEANPALCFDRRKGFGMRPDLPVGWAVRIEPGQTVELPVVPIGGQRIVRGFHGLVDGPLDAIDLEALIERMIARGFCHEPEE
SIO_010081: TRD_RS02465
subclass of: SO_0000673
so part of: TRD_RS02465
location: complement(530709..531098)
location: region:530709-531098:-1
so has part: feature:530709-531098:-1:exon

WP_012641936.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:530709-531098:-1:exon

TRD_RS02470
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: ureA
locus tag: TRD_RS02470
old locus tag: trd_0533
so part of: sequence
location: complement(531095..531397)
location: region:531095-531397:-1
so has part: feature:531095-531397:-1:exon
subclass of: SO_0000010

position:531095:-1
position: 531095
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:531397:-1
position: 531397
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:531095-531397:-1:exon

TRD_RS02470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: ureA
locus tag: TRD_RS02470
old locus tag: trd_0533
EC number: 3.5.1.5
inference: COORDINATES: protein motif:HMM:TIGR00193.1
GO function: GO:0009039 - urease activity [Evidence IEA]
GO process: GO:0019627 - urea metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: urease subunit gamma
translation: MYVTPKELDRLTVFTLAELARRHRARGIKLNYTEAAALLCDEVYEEARAGRSYEEVVAHASSLLTRDDVLPGVPEMLTVLHIDALFPDGTRLVTLRNPIR
SIO_010081: TRD_RS02470
subclass of: SO_0000673
so part of: TRD_RS02470
location: complement(531095..531397)
location: region:531095-531397:-1
so has part: feature:531095-531397:-1:exon

WP_041435925.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:531095-531397:-1:exon

TRD_RS02475
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02475
old locus tag: trd_0534
so part of: sequence
location: complement(531388..531729)
location: region:531388-531729:-1
so has part: feature:531388-531729:-1:exon
subclass of: SO_0000010

position:531388:-1
position: 531388
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:531729:-1
position: 531729
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:531388-531729:-1:exon

TRD_RS02475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02475
old locus tag: trd_0534
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAERRLYIWLERDPLAGPPDTAIEDVPGRADLDLLAEAIRQGKLGRYLPTKLALSRHRVPLLPSGYRRVNVANLLRQYRIPYRTRLEVLTDASSLQDCSSRIARSSREHEPCT
SIO_010081: TRD_RS02475
subclass of: SO_0000673
so part of: TRD_RS02475
location: complement(531388..531729)
location: region:531388-531729:-1
so has part: feature:531388-531729:-1:exon

WP_012641938.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:531388-531729:-1:exon

TRD_RS02480
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02480
old locus tag: trd_0535
so part of: sequence
location: complement(531774..532022)
location: region:531774-532022:-1
so has part: feature:531774-532022:-1:exon
subclass of: SO_0000010

position:531774:-1
position: 531774
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:532022:-1
position: 532022
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:531774-532022:-1:exon

TRD_RS02480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02480
old locus tag: trd_0535
inference: COORDINATES: protein motif:HMM:NF024139.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MIEIDGVEYLTANEAAALLGVKRETLYAYASRGRLRSYRRGIRRERLYRRSDIEALLRLQPAAGQGDDLPLPKAESWIPFTS
SIO_010081: TRD_RS02480
subclass of: SO_0000673
so part of: TRD_RS02480
location: complement(531774..532022)
location: region:531774-532022:-1
so has part: feature:531774-532022:-1:exon

WP_012641939.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:531774-532022:-1:exon

TRD_RS02490
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: rpsU
locus tag: TRD_RS02490
old locus tag: trd_0537
so part of: sequence
location: 532651..532875
location: region:532651-532875:1
so has part: feature:532651-532875:1:exon
subclass of: SO_0000010

position:532651:1
position: 532651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:532875:1
position: 532875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:532651-532875:1:exon

TRD_RS02490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: rpsU
locus tag: TRD_RS02490
old locus tag: trd_0537
inference: COORDINATES: protein motif:HMM:TIGR00030.1
GO component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000314 - organellar small ribosomal subunit [Evidence IEA]
GO function: GO:0003735 - structural constituent of ribosome [Evidence IEA]
GO process: GO:0006412 - translation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 30S ribosomal protein S21
translation: MAKSVHVELRENESFDALLKRFTKELQKAGVLRDYRAKRHYVSKSEQRRAKIRKAEHRRRRKLAKLAKKGQLGL
SIO_010081: TRD_RS02490
subclass of: SO_0000673
so part of: TRD_RS02490
location: 532651..532875
location: region:532651-532875:1
so has part: feature:532651-532875:1:exon

WP_012641941.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:532651-532875:1:exon

TRD_RS02495
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02495
old locus tag: trd_0538
so part of: sequence
location: 532938..533237
location: region:532938-533237:1
so has part: feature:532938-533237:1:exon
subclass of: SO_0000010

position:532938:1
position: 532938
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:533237:1
position: 533237
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:532938-533237:1:exon

TRD_RS02495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02495
old locus tag: trd_0538
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRQTWLLPVATATFVLFVAGSIAAVTMWSVAPWIIPLLAVPSLIVTWFALAVALADLMRRPAHRFPGGRWLWLLLIALLNVVAFLPYWLLVARRPNEED
SIO_010081: TRD_RS02495
subclass of: SO_0000673
so part of: TRD_RS02495
location: 532938..533237
location: region:532938-533237:1
so has part: feature:532938-533237:1:exon

WP_012641942.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:532938-533237:1:exon

TRD_RS02500
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: tenA
locus tag: TRD_RS02500
old locus tag: trd_0539
so part of: sequence
location: complement(533457..534122)
location: region:533457-534122:-1
so has part: feature:533457-534122:-1:exon
subclass of: SO_0000010

position:533457:-1
position: 533457
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:534122:-1
position: 534122
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:533457-534122:-1:exon

TRD_RS02500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: tenA
locus tag: TRD_RS02500
old locus tag: trd_0539
inference: COORDINATES: protein motif:HMM:NF015057.2
GO function: GO:0050334 - thiaminase activity [Evidence IEA]
GO process: GO:0006772 - thiamine metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: thiaminase II
translation: MTSFTQELWRSIDPIYQAIVVHPFLVGLTDGTLPEEAFRFYVVQDALYLQDYARCLALAAAKAPRETWCELFADHAKVALVVERALHESFFAAWGLSPDKIAGTPYAPTNLAYTSYLLRVAYERPFEEVIGALLPCYWIYWEVGKHLERSGSPNPLYQKWIDTYASEEYAAVVQAVLDVADQVVTDLPESRRQPIRTHFVTTARYEWMFWDAAWRLERWPV
SIO_010081: TRD_RS02500
subclass of: SO_0000673
so part of: TRD_RS02500
location: complement(533457..534122)
location: region:533457-534122:-1
so has part: feature:533457-534122:-1:exon

WP_012641943.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:533457-534122:-1:exon

TRD_RS02505
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02505
old locus tag: trd_0540
so part of: sequence
location: complement(534138..534782)
location: region:534138-534782:-1
so has part: feature:534138-534782:-1:exon
subclass of: SO_0000010

position:534138:-1
position: 534138
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:534782:-1
position: 534782
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:534138-534782:-1:exon

TRD_RS02505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02505
old locus tag: trd_0540
inference: COORDINATES: protein motif:HMM:NF015057.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TENA/THI-4 family
translation: MPSTLLDELLAEARPIWQAMIAHPFLHELATGTLSRERFHFWVQQDYRFVQDGIRFLGLLIARAPDEELRRGLLDAAVAFRNELTIFEEYARQHALSLAVEPTPICLGYTSFLLATAATGSLVEALTVLWCAEKAYYDAWSAVRAQLGLAPAYARWIENWTSPQFASWVDWLGEQLAKRATTPDRPPIRAAFLATARYEYLFWDMVYTGSNWPI
SIO_010081: TRD_RS02505
subclass of: SO_0000673
so part of: TRD_RS02505
location: complement(534138..534782)
location: region:534138-534782:-1
so has part: feature:534138-534782:-1:exon

WP_012641944.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:534138-534782:-1:exon

regulatory
type: Feature
subclass of: SO_0000001
RO_0002162: 309801
regulatory class: riboswitch
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF00059
inference: COORDINATES: profile:INFERNAL:1.1.4
note: TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
bound moiety: thiamine pyrophosphate
so part of: sequence
location: complement(534836..534953)
location: region:534836-534953:-1
so has part: feature:534836-534953:-1:region

position:534836:-1
position: 534836
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:534953:-1
position: 534953
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:534836-534953:-1:region

TRD_RS02510
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02510
old locus tag: trd_0542
so part of: sequence
location: 535360..536136
location: region:535360-536136:1
so has part: feature:535360-536136:1:exon
subclass of: SO_0000010

position:535360:1
position: 535360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:536136:1
position: 536136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:535360-536136:1:exon

TRD_RS02510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02510
old locus tag: trd_0542
inference: COORDINATES: protein motif:HMM:NF012695.2
GO function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
GO process: GO:0009058 - biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: sugar phosphate nucleotidyltransferase
translation: MKGVVLAGGLGTRLYPLTFATNKHLLPVYDQPMIYYPIQTLVKAGIDEIMVVTGGPHAGDFLRVLRNGRHLGVRHLEYAYQEEERGIADALSLCEEFADGEHICVILGDNTTDADIRPAVESFTGGALIFLARVPDPHRFGCPVFDPNDPTRILRIEEKPKEPKSPYAVTGLYLYDNRVFEFIRELEPSPRGELEITDVNNRYLELGLLRWVELQGFWSDAGTFESLHRANRYWAERRGYRDPDPILPSALPAGRSTH
SIO_010081: TRD_RS02510
subclass of: SO_0000673
so part of: TRD_RS02510
location: 535360..536136
location: region:535360-536136:1
so has part: feature:535360-536136:1:exon

WP_012641946.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:535360-536136:1:exon

TRD_RS02515
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: argS
locus tag: TRD_RS02515
old locus tag: trd_0543
so part of: sequence
location: 536149..538299
location: region:536149-538299:1
so has part: feature:536149-538299:1:exon
subclass of: SO_0000010

position:536149:1
position: 536149
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:538299:1
position: 538299
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:536149-538299:1:exon

TRD_RS02515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: argS
locus tag: TRD_RS02515
old locus tag: trd_0543
EC number: 6.1.1.19
inference: COORDINATES: protein motif:HMM:TIGR00456.1
GO component: GO:0005737 - cytoplasm [Evidence IEA]
GO function: GO:0004814 - arginine-tRNA ligase activity [Evidence IEA]
GO process: GO:0006420 - arginyl-tRNA aminoacylation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: arginine--tRNA ligase
translation: MFKREATRAAELINAELEALGYGRRTLEMRPIPFPGVWGTSTTVCYQIANEQLAEELERVAAGLSKKEAKRLVQERVRERAQAIAEELARRLSRHTGFARVEAINGYLNIVYDSNRFANDVLRTVLAEGSEFGRGEARGERVMVEYSQPNTHKAFHVGHLRNVCLGNALSRVLRFAGFDVLEANYIGDIGLHVIKCLWCYLRFHQGEEPPRERRGRWLGEIYAEADRRLSYRQDVIELLNELAREDQAFVQAIDRMLKELWQEHKVGEDIAYLLGQIAHGREIKPDAFYDDQTIVKFWPIVGRQLEQELVEARASDEGEKAAERIQRVEEWYDRWRRLAATLDWWPHVPEWEREVRETFQRWERKDPEFVRLWEETRAWSMEEFYRIYEELDVHFDVWFFESEVEEEGRQIVRELLERGIAEISDGLPVVKIDEKLGLEKETYRTLPILRSDGTTLYSTKDLALTKRKFEQYHVDRAIWVVDVRQTLYLQQIFKVMELWGFQQAAKCYHLAYETVMLPSGAMSSRLGNVVLYEDVARQVLERALEIIEEKNPTLPPEVKASVARQVGLGSLKYGMLSRDNNRVIVFDIEEALSFEGHAAPYIQYAHARACRILEKVDTLPEGPYALDALTREEIDLIEQIALFPDEVQRAADEYKPLVIANYVYELAKRFNEFYRVCPVLQAPEPQRSARLAIVAAARQTLANGLQLLGIAAPEVM
SIO_010081: TRD_RS02515
subclass of: SO_0000673
so part of: TRD_RS02515
location: 536149..538299
location: region:536149-538299:1
so has part: feature:536149-538299:1:exon

WP_012641947.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:536149-538299:1:exon

TRD_RS02520
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02520
old locus tag: trd_0544
so part of: sequence
location: complement(538319..539773)
location: region:538319-539773:-1
so has part: feature:538319-539773:-1:exon
subclass of: SO_0000010

position:538319:-1
position: 538319
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:539773:-1
position: 539773
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:538319-539773:-1:exon

TRD_RS02520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02520
old locus tag: trd_0544
inference: COORDINATES: protein motif:HMM:TIGR00350.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LCP family protein
translation: MTSDRPPDGSLPPTRFTARQLRAARQGSFESLDAPESVPPRPSRRRVSLPALAATLLLVIVAGIAAYLAPLAWASWRAYQRVFTTPIPRANVTINAQGTPEVVLVSPNDPAIQLPDWDKKDRINVLLLGVDRREAGDVPRADTIIVVTIDPLTKDVGMLSIPRDLLVTIPGYGQEKINAAYPLGMSSPLTGPGLLRATIEYNFGIPIHYYAEVDFEGFVRIVDTLGGVVVDVPAPIKDDEYPGEDYNYTRVYFAPGLQHMDGRTALRYVRTRHDDNDFSRGYRQQQVLRALREQGLRLDLLRKAPQLVDALADTVRTDLSPQQVLALAKLGSEIPRERIRSFTLLEATTSYWEPGQPFYLIPNWPAIQAILDEMFPPREGQPRPRVRSTTVAPPAQPLAPDLVEPVQTPPPEVQAPVQPQPTETAPVETEPTPSTPTPGTQLTPTLPPATPTPHGMHTPVPTVVPTAESTTPEATPTPEGTPTP
SIO_010081: TRD_RS02520
subclass of: SO_0000673
so part of: TRD_RS02520
location: complement(538319..539773)
location: region:538319-539773:-1
so has part: feature:538319-539773:-1:exon

WP_012641948.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:538319-539773:-1:exon

TRD_RS02525
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: dcd
locus tag: TRD_RS02525
old locus tag: trd_0546
so part of: sequence
location: 539928..540521
location: region:539928-540521:1
so has part: feature:539928-540521:1:exon
subclass of: SO_0000010

position:539928:1
position: 539928
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:540521:1
position: 540521
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:539928-540521:1:exon

TRD_RS02525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: dcd
locus tag: TRD_RS02525
old locus tag: trd_0546
EC number: 3.5.4.13
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012641950.1
GO function: GO:0008829 - dCTP deaminase activity [Evidence IEA]
GO process: GO:0009394 - 2'-deoxyribonucleotide metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: dCTP deaminase
translation: MILSDRDIIAALKSGRIKITPEPDLETQLGACSIDLHLGNTFMVFEHSRFSYIDPRQPQSIGDAMRTIVVPDGEPFIMQAGDFALASTREYIELADDLVGRLEGRSSIARLGITVHSTAALFEPGWAGTATMELSNLGRMAVALYPGMRICSFTFEQLSSPAMVPYRMKRGNKYAGQKDPKPSRLAEELSLEQLRGR
SIO_010081: TRD_RS02525
subclass of: SO_0000673
so part of: TRD_RS02525
location: 539928..540521
location: region:539928-540521:1
so has part: feature:539928-540521:1:exon

WP_012641950.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:539928-540521:1:exon

TRD_RS02530
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02530
old locus tag: trd_0547
so part of: sequence
location: complement(540528..541067)
location: region:540528-541067:-1
so has part: feature:540528-541067:-1:exon
subclass of: SO_0000010

position:540528:-1
position: 540528
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:541067:-1
position: 541067
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:540528-541067:-1:exon

TRD_RS02530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02530
old locus tag: trd_0547
EC number: 2.5.1.17
inference: COORDINATES: protein motif:HMM:TIGR00636.1
GO function: GO:0008817 - corrinoid adenosyltransferase activity [Evidence IEA]
GO process: GO:0009236 - cobalamin biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cob(I)yrinic acid a,c-diamide adenosyltransferase
translation: MLYTGKGDQGYTDLLGGRVPKYAPRPETFGTLDEATCAIGLARALAQDQETKQTLIRVQRDLYVMMAELAFAPGIEQEKYRITAEHVQHLEVTIDAIGARVPIGRHFVLPGDTVAGAALDFARTVVRRAERLVARLYHDGDIHNEHLLAYLNRLSSLLFVLARYEDHRAGVTPTPAKEP
SIO_010081: TRD_RS02530
subclass of: SO_0000673
so part of: TRD_RS02530
location: complement(540528..541067)
location: region:540528-541067:-1
so has part: feature:540528-541067:-1:exon

WP_012641951.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:540528-541067:-1:exon

TRD_RS02535
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02535
old locus tag: trd_0548
so part of: sequence
location: complement(541089..541949)
location: region:541089-541949:-1
so has part: feature:541089-541949:-1:exon
subclass of: SO_0000010

position:541089:-1
position: 541089
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:541949:-1
position: 541949
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:541089-541949:-1:exon

TRD_RS02535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02535
old locus tag: trd_0548
inference: COORDINATES: protein motif:HMM:NF013245.2
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter permease
translation: MASIELTEPVRPPSPLLRASIGVLTLWQRDLLRFWRDRTRIAGGLAQPLLFLAIFGAGLSPWMGNLGGTMFGPDYLQFLYPGIIGMSVLFSSIFSAVSVVWDREFGFLKELLVAPIPRWSIVIGKALGGSSTAMFQGLLLLILAPVIGVRLSLSTILLLIPLLFLLAFSLSSIGLVIAARMRSTEGFGLIMNFLVTPLLFLSGALYPLNNLPTWLLILTRLDPVTYGIDAIRRVVLSSSGVPQPVIDQLGVTLFGHPLDPLTDAAVVLGLGLVLITVAARQFARPD
SIO_010081: TRD_RS02535
subclass of: SO_0000673
so part of: TRD_RS02535
location: complement(541089..541949)
location: region:541089-541949:-1
so has part: feature:541089-541949:-1:exon

WP_012641952.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:541089-541949:-1:exon

TRD_RS02540
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02540
old locus tag: trd_0550
so part of: sequence
location: complement(542961..545306)
location: region:542961-545306:-1
so has part: feature:542961-545306:-1:exon
subclass of: SO_0000010

position:542961:-1
position: 542961
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:545306:-1
position: 545306
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:542961-545306:-1:exon

TRD_RS02540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02540
old locus tag: trd_0550
inference: COORDINATES: protein motif:HMM:NF024872.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MTITTDILRQAAQKYQALGLPAIPAYRGRPLILWQVYQQRLPEPEEVEGWPWSKADGVAVICGHQTTFGGFWWCLDVEHQHRVEAERWLDATHPGWRHGLVAESQRNGLHVYCRSRQPVRTQRHEWGDIKGSGSLVYAPPSRRYKPDATQDYEWLSFDPTNALQLEPADLPWPTDNGHQQGPLGQPSLAETLKTTIPVGNRHNTMVRVAGWLRGVGHLEPDEILTVLQQMNRRCEVPLPDQELVEIARSSSKWSVNPTLVAGNGHQQSTDSGGHPVRKPVRFTGRETPPLRPWLVADVIPEGLPALIYGNGGSAKSYLALLAGLAVAAGVPWLGKPTVQRPTLFADFELDETEQHRRARRLAIGLGLADVPEVFEYVQLADLSPRDAEAVLVDWVAAHPDGLVIVDSVGAAAITDLEKAQAVVQVFRNLRSLNPGGLLLVDHQAKLQPGQDYRDKTPFGSVYKYNLSRVVWQSELVESQPGEAWVILRNTKNNLGPLQGEIGVKLSFGEGLVTVTPVALTTGPLVERASLESRIIAVLKEHGPSTAQEIADRLEANPKSVKAKLSRLKGLGRVVVTGTVGREHLWSLPGTPGHSPDDQEQASLTLTDNTAVNVNAGPGKHHTPHREAKIDAQDPGGEAGKHHTWLHEAQNDEHTPAGEAEKHHAWLPDAKNAVCEVCGQLFTWSGRGQPARYCSRTCQMKAYRQRSTPVDAPGRGNPGSLATETETNGHPPDPSACLDCGKRIDAEGFQYICPPCMKLRYDKLQRQYPEKLIRWLEQQHGR
SIO_010081: TRD_RS02540
subclass of: SO_0000673
so part of: TRD_RS02540
location: complement(542961..545306)
location: region:542961-545306:-1
so has part: feature:542961-545306:-1:exon

WP_012641954.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:542961-545306:-1:exon

TRD_RS02545
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02545
old locus tag: trd_0551
so part of: sequence
location: complement(545370..545738)
location: region:545370-545738:-1
so has part: feature:545370-545738:-1:exon
subclass of: SO_0000010

position:545370:-1
position: 545370
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:545738:-1
position: 545738
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:545370-545738:-1:exon

TRD_RS02545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02545
old locus tag: trd_0551
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTVAVSPTLPYAIKYRKHGRIVCLGKICRNDDGELIFGVPYKGRPFRTPSLPLPVYLHLLAAGVRWWIIRFDDQRKAYRIELARVDRVATIGTDGELTVPLRMFEACPYPEWPYAVRSVLIR
SIO_010081: TRD_RS02545
subclass of: SO_0000673
so part of: TRD_RS02545
location: complement(545370..545738)
location: region:545370-545738:-1
so has part: feature:545370-545738:-1:exon

WP_041435927.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:545370-545738:-1:exon

TRD_RS02550
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02550
old locus tag: trd_0552
so part of: sequence
location: complement(545790..545972)
location: region:545790-545972:-1
so has part: feature:545790-545972:-1:exon
subclass of: SO_0000010

position:545790:-1
position: 545790
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:545972:-1
position: 545972
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:545790-545972:-1:exon

TRD_RS02550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02550
old locus tag: trd_0552
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MMLVVKVSRFRPGQLEPEAVVATTDQAICQAVLRLIRERLAREEEQDGLVSKPTVRRTDD
SIO_010081: TRD_RS02550
subclass of: SO_0000673
so part of: TRD_RS02550
location: complement(545790..545972)
location: region:545790-545972:-1
so has part: feature:545790-545972:-1:exon

WP_012641956.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:545790-545972:-1:exon

TRD_RS02555
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02555
old locus tag: trd_0553
so part of: sequence
location: complement(546244..547323)
location: region:546244-547323:-1
so has part: feature:546244-547323:-1:exon
subclass of: SO_0000010

position:546244:-1
position: 546244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:547323:-1
position: 547323
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:546244-547323:-1:exon

TRD_RS02555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02555
old locus tag: trd_0553
inference: COORDINATES: protein motif:HMM:NF012798.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MATIRRRKSGLFEARLQRDGRRFSVYGRTETEVRQKLAELERKLAIDQAPPVGRVTVRELCERWLATERKRWKPKTYYDYRWHLEHHVYPVLGRVQLSKLTPDRLQRFFDSLSGRSANLTFRLLHRCFVVGIRWGFLGQNPCDRVVPPAYQAPPIELPDADALARLFRYCLESDDPYAGLVGLSLLCGLRRGEITALRWSDIDLQTGQLSVVRSGQWIAGRWVETEPKTRAGRRTIYVGEQGIRLLRRQKALVAQLKLQAGPAWQEHGLVFPGPNGQPLSPSRVAAAVQRICKASGVPPLRHHSLRHASASLALLAGVPLPEVSRQLGHANVSITARVYSHCISDGRRVTEAIERVLAG
SIO_010081: TRD_RS02555
subclass of: SO_0000673
so part of: TRD_RS02555
location: complement(546244..547323)
location: region:546244-547323:-1
so has part: feature:546244-547323:-1:exon

WP_012641957.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:546244-547323:-1:exon

TRD_RS02560
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02560
old locus tag: trd_0554
so part of: sequence
location: complement(547416..548336)
location: region:547416-548336:-1
so has part: feature:547416-548336:-1:exon
subclass of: SO_0000010

position:547416:-1
position: 547416
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:548336:-1
position: 548336
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:547416-548336:-1:exon

TRD_RS02560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02560
old locus tag: trd_0554
inference: COORDINATES: protein motif:HMM:TIGR01188.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein
translation: MTAAIEVHELVKQYGDVTAVAGINFTVARGEFFAFLGPNGAGKTTTINILCTLARPTSGRARVASCDVVREPHRVRERIGIIFQDPSLDTQLTAWKNLALHARVYGVPGTLWRQRAEQLLRLVELWDRRHQLVRTFSGGMKRRLELVRGLLHRPEILFLDEPTLGLDPQTRRQIWSYLETLRRETGVTLFLTTHYLEEAEQCDRVAIIDHGRVIALDTPDRLKARVGRDIIVLATADDARAASELRERFSLQPLVVDGTLRVEVERGDTFIPELVRQLSVPIRSVSLRRPSLDDVFLALTGRQIRS
SIO_010081: TRD_RS02560
subclass of: SO_0000673
so part of: TRD_RS02560
location: complement(547416..548336)
location: region:547416-548336:-1
so has part: feature:547416-548336:-1:exon

WP_012641958.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:547416-548336:-1:exon

TRD_RS02570
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02570
old locus tag: trd_0555
so part of: sequence
location: 549180..549476
location: region:549180-549476:1
so has part: feature:549180-549476:1:exon
subclass of: SO_0000010

position:549180:1
position: 549180
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:549476:1
position: 549476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:549180-549476:1:exon

TRD_RS02570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02570
old locus tag: trd_0555
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQWRILSAWFALLVVGGANAMLFWSSFNRVVGGFGTGRDWLGLVGGLFGVLVSLVVARWYLQRTGALVGGMEKRAVGDTAGEGTGRRGQHVGQSRSER
SIO_010081: TRD_RS02570
subclass of: SO_0000673
so part of: TRD_RS02570
location: 549180..549476
location: region:549180-549476:1
so has part: feature:549180-549476:1:exon

WP_012641959.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:549180-549476:1:exon

TRD_RS14815
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS14815
old locus tag: trd_0556
so part of: sequence
location: 549448..549585
location: region:549448-549585:1
so has part: feature:549448-549585:1:exon
subclass of: SO_0000010

position:549448:1
position: 549448
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:549585:1
position: 549585
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:549448-549585:1:exon

TRD_RS14815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS14815
old locus tag: trd_0556
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSGRAGQKDERSEQHPVGTLFLTLLMLIVIVGIWLTVYFDMLGRG
SIO_010081: TRD_RS14815
subclass of: SO_0000673
so part of: TRD_RS14815
location: 549448..549585
location: region:549448-549585:1
so has part: feature:549448-549585:1:exon

WP_012641960.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:549448-549585:1:exon

TRD_RS02575
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02575
old locus tag: trd_0557
so part of: sequence
location: 549589..550056
location: region:549589-550056:1
so has part: feature:549589-550056:1:exon
subclass of: SO_0000010

position:549589:1
position: 549589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:550056:1
position: 550056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:549589-550056:1:exon

TRD_RS02575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02575
old locus tag: trd_0557
inference: COORDINATES: protein motif:HMM:NF024864.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cytochrome c oxidase subunit II
translation: MRIEAYERIFMILAGLMLVLGIVGIGIGALVAGVHVPSPAGRIDPRALSTTPPFDQPGLRDLGGGKYEAVVIARAWQFQPDEIQVPVGATVTFTLASPDVIHGFVLTGTNANVMVIPGQISQVTARFDQPGEYLWVCHEYCGFGHHQMYGKVVVR
SIO_010081: TRD_RS02575
subclass of: SO_0000673
so part of: TRD_RS02575
location: 549589..550056
location: region:549589-550056:1
so has part: feature:549589-550056:1:exon

WP_012641961.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:549589-550056:1:exon

TRD_RS02580
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02580
old locus tag: trd_0558
so part of: sequence
location: 550053..551741
location: region:550053-551741:1
so has part: feature:550053-551741:1:exon
subclass of: SO_0000010

position:550053:1
position: 550053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:551741:1
position: 551741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:550053-551741:1:exon

TRD_RS02580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02580
old locus tag: trd_0558
inference: COORDINATES: protein motif:HMM:NF012343.2
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
GO process: GO:0009060 - aerobic respiration [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cbb3-type cytochrome c oxidase subunit I
translation: MSATARARTVAGGGAVTHEGIFLAEQLWPIKGQLVLALIGLAIGGLMGLMQALDRVGIVIYKAMLMQTYYQGLTIHGVLLAFLFTFAFSNAFVSLVAIRGFERPLASTFLAQGAFWTMLVGTLLAAYAILTNQATVLFTFYAPMRASSLFFLGAALLVISTLLTALNLVLTRRAWQREHPGERTPLLGFVGVVTYVMWALASLGVVVLVVFFLLPWSLGWLKTTDPQFNRILFWYTGHAIVYFWLMPAYISWYLMVPRQVGGRVFSDSLVRLAFILLLVFSVPTGLHHQYVDPGIPTVMKVVHLFTTFSVVFPSLVTAFTVMAALEDGGRARGGTGLLGWIWKLPWGDPSVAAQLLAMLVFILGGATGIVNASYNLNNVVHNTSFVPGHFHMTVGTAVTLSFIGISYWLIPFLTGRELMGRRLALAQAWLWFVGVLLFARGQIAAGLLGEPRRSSIGEAPYRDLISAGLDNWLTAIGGTLMVISGLLYFIVVLWTVFAGRRLTQPLEIPVAEMRFGARETSPRLDQLGFWFLIAVILVAIAYIPTILLYLPLQSVSPPIKVY
SIO_010081: TRD_RS02580
subclass of: SO_0000673
so part of: TRD_RS02580
location: 550053..551741
location: region:550053-551741:1
so has part: feature:550053-551741:1:exon

WP_012641962.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:550053-551741:1:exon

TRD_RS02585
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02585
old locus tag: trd_0559
so part of: sequence
location: complement(552014..553639)
location: region:552014-553639:-1
so has part: feature:552014-553639:-1:exon
subclass of: SO_0000010

position:552014:-1
position: 552014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:553639:-1
position: 553639
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:552014-553639:-1:exon

TRD_RS02585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02585
old locus tag: trd_0559
inference: COORDINATES: protein motif:HMM:NF006122.0
GO function: GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: thiamine pyrophosphate-binding protein
translation: MPVLTGGQALVAQLLEEGIEIVFGLPGVQLDWAFDALYEARDRIRVIHTRHEQATSYMADGYARTTGKMGVCLVVPGPGVLNAMAGLATAYACNSRVFCITGQIPSDQIEKGRGFLHEIPRQLEALRSVTKWAARAMHPSQIPALAHEAIVQLWSGRPRPVALEIPPDVLQATAEVETIAATRPLPPDGDPELIERAAQLLGTAQKPLIFAGGGILAAEAWEELRALAELLEAPVVLTMDGKGALDDRHDLAHNIIAARELVPESDVILIVGSRFLQPATSDWGPRHQAVIQIDIDPDEIGRNYPPTIGIVADAKRALSALLERVPLYNQKRDSRRAELRALKERVFDLLWEVQPQASFAMALREALPEEAIVVSESTQVGYWTWNAFPVYRPRTFVTSGYQGTLGFGFATALGAKAGNPDRPVLSLNGDGGFLYNLPELATMVQHRLDVITVVFNDNAFGNVRRIQKERFGGHYIASELYNPDFVALAHSFGIEGVRVSTPEALRDIVADTVRNPRPILIEVPVGEMPSIWGIVMAGRRS
SIO_010081: TRD_RS02585
subclass of: SO_0000673
so part of: TRD_RS02585
location: complement(552014..553639)
location: region:552014-553639:-1
so has part: feature:552014-553639:-1:exon

WP_012641963.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:552014-553639:-1:exon

TRD_RS02590
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02590
old locus tag: trd_0560
so part of: sequence
location: complement(553862..554698)
location: region:553862-554698:-1
so has part: feature:553862-554698:-1:exon
subclass of: SO_0000010

position:553862:-1
position: 553862
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:554698:-1
position: 554698
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:553862-554698:-1:exon

TRD_RS02590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02590
old locus tag: trd_0560
inference: COORDINATES: protein motif:HMM:NF024109.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: alpha/beta hydrolase
translation: MSVTELAWATTPNGTKIAYERRVGSAGPPILALHGVLVGTSNWVHQVLRLPQFQWLLPHLRGHGNSPPPMPHQTIEEAALDVESVLLAERIDRAVVLGNSLGATIALALALMRPHRIHGLVLVEPSLPALAGEEERERLRHSAALVRELLAAGRIDEALAHFLGPRLGPNWAEKAGQRRLEEWRRNIFSTPAWIDAVLAFDPGPVPLAAIDCPTLLVYGAETQPGYRRTIFALADLLPHAQIAEVPRAGHGAPVDNPDAFNELLLGFLSAIEWLPSPG
SIO_010081: TRD_RS02590
subclass of: SO_0000673
so part of: TRD_RS02590
location: complement(553862..554698)
location: region:553862-554698:-1
so has part: feature:553862-554698:-1:exon

WP_012641964.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:553862-554698:-1:exon

TRD_RS02595
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: odhB
locus tag: TRD_RS02595
old locus tag: trd_0561
so part of: sequence
location: complement(554704..556023)
location: region:554704-556023:-1
so has part: feature:554704-556023:-1:exon
subclass of: SO_0000010

position:554704:-1
position: 554704
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:556023:-1
position: 556023
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:554704-556023:-1:exon

TRD_RS02595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: odhB
locus tag: TRD_RS02595
old locus tag: trd_0561
EC number: 2.3.1.61
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000179874.1
GO component: GO:0045252 - oxoglutarate dehydrogenase complex [Evidence IEA]
GO function: GO:0004149 - dihydrolipoyllysine-residue succinyltransferase activity [Evidence IEA]
GO process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase
translation: MAIEVRVPQMGESIVEAVIGAWRKREGDPVNPGDVLVELETEKVNVEVTADRAGVLQHILKREGETVTVGEVIALIEETAQVTAPVQETPAEAGRAREPAPLPEVTTAAASQPAQPAGGPAVRATPAVRRLAEEYGIDLAEVPASGEGGRVTREDVLRYVAQRGAAARPADGAAPQPVAAAPPPAAPPAPGVTPPEAPVVLPFSAAGRREERIRMSQRRKTIARRLVEAQHTAAMLTTFNEIDMSAVVALRNRWRQQFRERYGVSLGFMSFFTKAVVGALKAFPLLNAEIQGDEIVVKYYYDIGIAVATDEGLVVPVVRDADRKSFAEIEREIEELARKARERRLTLEELSGGTFTITNGGVFGSLLSTPILNPPQVGILGMHKIEERPVVVNGEIVIRPMMYVALTYDHRIVDGREAVLFLVRVKELIEDPERLLLEG
SIO_010081: TRD_RS02595
subclass of: SO_0000673
so part of: TRD_RS02595
location: complement(554704..556023)
location: region:554704-556023:-1
so has part: feature:554704-556023:-1:exon

WP_012641965.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:554704-556023:-1:exon

TRD_RS02600
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02600
old locus tag: trd_0562
so part of: sequence
location: complement(556044..558848)
location: region:556044-558848:-1
so has part: feature:556044-558848:-1:exon
subclass of: SO_0000010

position:556044:-1
position: 556044
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:558848:-1
position: 558848
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:556044-558848:-1:exon

TRD_RS02600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02600
old locus tag: trd_0562
EC number: 1.2.4.2
inference: COORDINATES: protein motif:HMM:NF006914.0
GO function: GO:0004591 - oxoglutarate dehydrogenase (succinyl-transferring) activity [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
GO process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 2-oxoglutarate dehydrogenase E1 component
translation: MVNQQEALERLTGLNLGYILELYEVYRRDATAVTPEWRAFFEQWGPHLEQLAAPSPAAAIAGPAFDFTKVAAVVQLAQRIRHRGHRAARLDPLGSPPPGDPALDPAYHGLTSQDLEHLPATLVGGPAAQGARNAAEAIERLREIYCGTIGYDYGHLQDRTEREWLEEAIESERYRVRLSPTEKRALLERLTAVEVFERFLHRTFVGQKRFSIEGTDTLVPILDEILRQVAETGIPKVAMGMAHRGRLNVLAHVLGKPYEQILAEFMGLDHREPVALTEGGTLGYTGDVKYHMGGIRAAGQLQVILAHNPSHLEFVDPVVEGMARALQERRDRPGAPEQDVDACLPILIHGDAAFPGEGIVAETLNMSGIPGYATGGTLHIIVNNQLGYTTEPQEGRSTFYASDPARGFEIPVIHVNADDPEACLTAARLAFAYRQRFHKDVLIDLIGYRRWGHNEGDEPTFTQPVMYRRIAEHPTVRELWAQRLVAEGIVTRDEAAALEQELFGKLQHLRQEVLTRAQRADQVNGSIGSGAPKLPTIATAVPLETLKELNRQAHTLPAGFNLNPKLRRQLQRRLEVVEREEVIDWAHAELLAFASLLAEGIPIRLTGQDTIRGTFSQRHVAFYDFETGERVIPLQQMPAARASFAVYNSPLSEAGPLGFEYGYSVQAPDALVLWEAQFGDFANVAQVIIDQFIVSGWAKWRQRSALVLLLPHGYEGQGPEHSSARLERFLQLAAEDNVRIANCTTAAQYFHLLRRQAILRTVDPRPLIVMTPKSLLRHPRAMSPMRELAEGRFQPVLDDPTARQRPDDVTRLILCSGKVYVDLVTSQFAATASHVAIVRVEELYPFPGDELAAILRQYPNARDVVWLQEEPKNMGAWTYMQPRLQPLLNGRTLRYIGRPERASPAEGFAEMHEQEQARIIAEAFAGVPEPAVPA
SIO_010081: TRD_RS02600
subclass of: SO_0000673
so part of: TRD_RS02600
location: complement(556044..558848)
location: region:556044-558848:-1
so has part: feature:556044-558848:-1:exon

WP_143714605.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:556044-558848:-1:exon

TRD_RS02605
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02605
old locus tag: trd_0563
so part of: sequence
location: complement(559017..560273)
location: region:559017-560273:-1
so has part: feature:559017-560273:-1:exon
subclass of: SO_0000010

position:559017:-1
position: 559017
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:560273:-1
position: 560273
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:559017-560273:-1:exon

TRD_RS02605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02605
old locus tag: trd_0563
inference: COORDINATES: protein motif:HMM:NF013646.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NAD(P)/FAD-dependent oxidoreductase
translation: MAKQIGRFDAIVVGARIAGCVTAAALAQLGWSILLIERARFPRPTLSTHLFFSDTLHAFQRAGLLEPVLRIGAPRLRWLRFPYVAAPFPESGEFDFALCIRRDVLDTALFETVRSLSNVTALTSARVTAVRRVDDRRWDVVVETTSEEWLASAPLVIGADGKDSIVARQVGAPVLQEIPPLFAWYYTYVDDLPWDSDLAALAYRGDYPEIGAEYAAAFLFPCDAGLTLVGYGVEHRAFPAFRRDVTHHFFAGLRRIPEIWERFAAARQVAPIRGTGHLPNFLRQASGTGWALVGDAGCHQDPHSVQGMGNAARSAWLLAEELARVQTEGIDLQQALARYASRRDDDLLPMFAFTTFELRRRLPDDIWERFEARTREDPHLASLRVAAMVHAIHPATVYTPERVVSLANGEAVLPLHSA
SIO_010081: TRD_RS02605
subclass of: SO_0000673
so part of: TRD_RS02605
location: complement(559017..560273)
location: region:559017-560273:-1
so has part: feature:559017-560273:-1:exon

WP_012641967.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:559017-560273:-1:exon

TRD_RS02610
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: mgtE
locus tag: TRD_RS02610
old locus tag: trd_0564
so part of: sequence
location: 560974..562332
location: region:560974-562332:1
so has part: feature:560974-562332:1:exon
subclass of: SO_0000010

position:560974:1
position: 560974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:562332:1
position: 562332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:560974-562332:1:exon

TRD_RS02610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: mgtE
locus tag: TRD_RS02610
old locus tag: trd_0564
inference: COORDINATES: protein motif:HMM:TIGR00400.1
GO function: GO:0015095 - magnesium ion transmembrane transporter activity [Evidence IEA]
GO process: GO:0015693 - magnesium ion transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: magnesium transporter
translation: MATEMDIQMQLRSLLQRGERETVEDLLWELVEQRQLYAVLRELEPFELARLAELLGDETFGEFLAELDPSDAADLLERLSSQEAADVLEAMAPDDAADVFARLDPDEARQILVEMEPLEAQELQELLSYPPETAGGRMTPSYVALLPDVRVDQAIAALRKVAAEVETIYYAYVVDEANHLLGVVSMRDLVLSPPYRTVGEIMTRDIVKVRATADQEEAARLLVEEGLLAIPVVDDEDRLLGIITVDDVADILEREVTEDIERLGGSQPLEVPYTRATPFYLWRRRIGWLLLLFVAEMYTGTVLRHFEQELEEAIALAFFVPLLIGTGGNAGSQVVTTLVRAMAVEGIGIRDFFRIFPKEFIAGLLAGVVMGTAGFLRAEILGVDPAISLTVGVALFCIVLWAVTVATLLPLLLRRLGIDPAVVSSPFIATLVDGTGLVIYFNVARIILHLHS
SIO_010081: TRD_RS02610
subclass of: SO_0000673
so part of: TRD_RS02610
location: 560974..562332
location: region:560974-562332:1
so has part: feature:560974-562332:1:exon

WP_012641968.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:560974-562332:1:exon

TRD_RS02615
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02615
old locus tag: trd_0565
so part of: sequence
location: 562379..563326
location: region:562379-563326:1
so has part: feature:562379-563326:1:exon
subclass of: SO_0000010

position:562379:1
position: 562379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:563326:1
position: 563326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:562379-563326:1:exon

TRD_RS02615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02615
old locus tag: trd_0565
inference: COORDINATES: protein motif:HMM:NF012955.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MBL fold metallo-hydrolase
translation: MELVRELEPGWYLVDLRFQGVENVIASYLFVGRQGVAIVDTGPSTTIERLVAALQELDVPPEAVRHLVLTHIHLDHGGAAGHLLERFPNARVYVHPLGAPHLIDPTRLWASAARIYGDRMELLWGSIRPCAAERVVVVEDGEAIDLGDGRRLRALATPGHASHHHAWLDTATGSVFAGDIAGIRISALPFVFPPTPPPDIDLGQWRRSIERLRRLQPSRLYLGHFGPVEDIDWHLDDLLARLFLWAGWIGALLEQGLDAETIAGRLQELTDGEFHRLLGERAPVIAYQWASGSFRMTVDGYVRYFRTHRPWASGS
SIO_010081: TRD_RS02615
subclass of: SO_0000673
so part of: TRD_RS02615
location: 562379..563326
location: region:562379-563326:1
so has part: feature:562379-563326:1:exon

WP_052294043.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:562379-563326:1:exon

TRD_RS02620
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02620
old locus tag: trd_0566
so part of: sequence
location: 563341..564564
location: region:563341-564564:1
so has part: feature:563341-564564:1:exon
subclass of: SO_0000010

position:563341:1
position: 563341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:564564:1
position: 564564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:563341-564564:1:exon

TRD_RS02620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02620
old locus tag: trd_0566
inference: COORDINATES: protein motif:HMM:NF019310.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MFS transporter
translation: MSAPSLQRRAYRLIILLGLVSLFGDISYEGVRGVTGPYLALLGASAVAVGLVAGLGEFAGYALRTASGYLADRLRLHWLLTVVGYGLIATLPLLALVHRWELAAALIVLERLGKALRTPSRDAILSHAASQVGRGKGFGIHEALDQLGALIGPVIFAVALTFDGEAGYRLGFGLLTIPAILAIVILVLAWRQEPEPESLESVTPRVNRPTEASGSRRLSGPFWRYTLFTALTTLGFVPFALLSYHVEQTGRFSPPLIPLLYAVAMGVDGGIALIAGWGYDRFGLRTLAAVPICIALGTAAALQSTTGFIITGVVVWGIAMGLVETTMRAAVGELSAPSARGLAYGVFNTVFGTAWLAGGAVLGYLYEQLGSRGTIGATLVLEIAALLLFWGLGVARAHASYRAQSVS
SIO_010081: TRD_RS02620
subclass of: SO_0000673
so part of: TRD_RS02620
location: 563341..564564
location: region:563341-564564:1
so has part: feature:563341-564564:1:exon

WP_041435930.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:563341-564564:1:exon

TRD_RS02625
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: polX
locus tag: TRD_RS02625
old locus tag: trd_0567
so part of: sequence
location: complement(564693..566438)
location: region:564693-566438:-1
so has part: feature:564693-566438:-1:exon
subclass of: SO_0000010

position:564693:-1
position: 564693
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:566438:-1
position: 566438
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:564693-566438:-1:exon

TRD_RS02625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: polX
locus tag: TRD_RS02625
old locus tag: trd_0567
inference: COORDINATES: protein motif:HMM:NF006375.0
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006281 - DNA repair [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA polymerase/3'-5' exonuclease PolX
translation: MRRNEEVALLLDNIAELLMLKNENPYRIRAYTTAAQNIRALDEDIEELARQGKLDEIPGVGKAIAAKIEEYLRTGRLEYYEQLKREVPLQAVDLLEVPGIGPARAHLLYEQLGITTIQDLLQAAQEHKLRKLPGFGEKLEERIAREAARLMQRSKRLLLGIALPVAEEVVAALRPHAAIRAIDPAGSLRRMKETIGDIDILVASDDPPAVVDAFVHLPFVKEVLAVGPTRPSILTREDLQVDLRVVRPHEYGSALLYFTGSKEHNIALRSFVQERGWKLSEYGLFDETGKLLASETEHEIYALLGMDWIPPELRENRGEIEAAREHRLPILVEQRDIRGDLHVHTDWSDGHEPLERMCEAARARGYEYLVISDHSPSLTVARGLSIERLREQRERIRELNERLAPFRILQGAEVNILSDGTLDYPDEILAELDLVIVSVHSAFDMPQERMTERVIRALANPHVDILGHPTGRLLTSRLPYEIDLDAVLDAAAHYGVAIEVNGQPDRLDLPDIWVQRAINRGILIACTSDAHSTRQLDNMRWSVATARRGWAEPRHVLNTRSLEELRTWLATHHRGAPAHRT
SIO_010081: TRD_RS02625
subclass of: SO_0000673
so part of: TRD_RS02625
location: complement(564693..566438)
location: region:564693-566438:-1
so has part: feature:564693-566438:-1:exon

WP_012641972.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:564693-566438:-1:exon

TRD_RS02630
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02630
old locus tag: trd_0569
so part of: sequence
location: complement(566444..567214)
location: region:566444-567214:-1
so has part: feature:566444-567214:-1:exon
subclass of: SO_0000010

position:566444:-1
position: 566444
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:567214:-1
position: 567214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:566444-567214:-1:exon

TRD_RS02630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02630
old locus tag: trd_0569
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVFQDPYFHALRRRLQAAPYDEARRRLTARLAETTPHPPRPPHLTPDEIAQREQWLYREGLDLYLPILRTVLRAIAREVEAGLVEPTELDPEELTFATYQRARSELRELPQLPRDRFAWLRRLAHDTVHRAALARHAERHRGTASEPTEHPEAPPAELQGTAARLAAALADPDLPLPDDLLADPETRRLLDQLLDRLPEQWRETYLLSALDRWSDEQIAAVTGLLPDEVRALVHATVRLLRAWLEESTVQPTRPKE
SIO_010081: TRD_RS02630
subclass of: SO_0000673
so part of: TRD_RS02630
location: complement(566444..567214)
location: region:566444-567214:-1
so has part: feature:566444-567214:-1:exon

WP_012641973.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:566444-567214:-1:exon

TRD_RS13500
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS13500
old locus tag: trd_0570
so part of: sequence
location: complement(567553..569280)
location: region:567553-569280:-1
so has part: feature:567553-569280:-1:exon
subclass of: SO_0000010

position:567553:-1
position: 567553
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:569280:-1
position: 569280
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:567553-569280:-1:exon

TRD_RS13500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS13500
old locus tag: trd_0570
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGQTPILRPLQPNGRVTTVPRTAASAIGKPRWCNRLVHLVLALLGLSATLFTLLVTWNERSRAITAPLLLGRYAAAGALATDGRAIVLAIPETADSTLLLEVSGNEHHATLTRSTGQISELALAQGTALWLERSCTDCSGRIRALRLETRETWTLAETGIRSGPRANGRWAAWVARNGTDRLFVADLENTRHPPRILTVLPPEHAITDLQLRAGRVAWVEVTRTEEWRIQLQPVASADAPVTVLQGEGTPPSILLSNDALITIDQTMRVISLDEPRLNVPIWESVPKAVTADGRYVFWIDTALPETGRRAIMAYDTLSKSRFLAVPDATYVSQLAVGGDRLVWFQEHGPDDVSLWAAPIADLLPTARRAKPESQNPGWRYFPETGHYLANGFRHFWEQFGGASLFGFPLSEEFDEYDPDAGQFRTVQYFERARFVWIPDSPIALDSVVLDHIGVELVHQLGLASARVFRSPAPASDGAGMTTCRTFPETGHELCGPLLDAWLHIGSSVTARMPPDQAALLITGLAISEPTVLPDGTIVQYFERARLEFRPQAEPERAVSLGRIGAEILAARDWLR
SIO_010081: TRD_RS13500
subclass of: SO_0000673
so part of: TRD_RS13500
location: complement(567553..569280)
location: region:567553-569280:-1
so has part: feature:567553-569280:-1:exon

WP_012641974.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:567553-569280:-1:exon

TRD_RS02640
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: arcC
locus tag: TRD_RS02640
old locus tag: trd_0571
so part of: sequence
location: complement(569414..570361)
location: region:569414-570361:-1
so has part: feature:569414-570361:-1:exon
subclass of: SO_0000010

position:569414:-1
position: 569414
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:570361:-1
position: 570361
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:569414-570361:-1:exon

TRD_RS02640
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: arcC
locus tag: TRD_RS02640
old locus tag: trd_0571
EC number: 2.7.2.2
inference: COORDINATES: protein motif:HMM:TIGR00746.1
GO function: GO:0008804 - carbamate kinase activity [Evidence IEA]
GO process: GO:0006520 - amino acid metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: carbamate kinase
translation: MRRIVVALGGNAIIQAGQRGTAEEQQANVDLTCRQLAELVAAGYELIITHGNGPQVGNLLVKNELAREIVPPVPLHWCVAQTQATIGFMIQQSLGAELRQRGIDRVVATLVTRTEVSPDDPAWNDPTKPIGLYYPEERARAIMAETGQVWKPQGTRGWRRVVPSPDPIAIVDRPAIELLLAAGALVVACGGGGIPVVRRPDGRYEGVEAVVDKDLAAALLAHELGADALLILTDVPNVMLHYGTPQARPLERVLASELRRYQVEGHFASGSMGPKVEAALRFVSRGSTRRSIIAALDHARDALEGRAGTHVLPDP
SIO_010081: TRD_RS02640
subclass of: SO_0000673
so part of: TRD_RS02640
location: complement(569414..570361)
location: region:569414-570361:-1
so has part: feature:569414-570361:-1:exon

WP_012641975.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:569414-570361:-1:exon

TRD_RS02645
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02645
old locus tag: trd_0572
so part of: sequence
location: complement(570358..571818)
location: region:570358-571818:-1
so has part: feature:570358-571818:-1:exon
subclass of: SO_0000010

position:570358:-1
position: 570358
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:571818:-1
position: 571818
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:570358-571818:-1:exon

TRD_RS02645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02645
old locus tag: trd_0572
inference: COORDINATES: protein motif:HMM:NF018275.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF1116 domain-containing protein
translation: MDGMHEKVQKLLETTPAVINVGLDLFARSVQDQGGAVYPVEWKPPMVEPRRLALPLFNDPTIDAANREAVTRMMRAQPVVVGVARARDVIPGMTDRTFLHAGPPIDWAHASGPLRGALIGAMLFEGFAATPEEAIRKLESGYVELSPNHEHSAVGPMAGVISPSMPVYIAINAAGENRAYTNFNEGIGKVMRMGAYAPEVIDRLRWISTVLAPLVGQALARSGGIDLRNIIAQALQMGDECHNRNKAATSLFYREIAPYLVECDAPLSDIAAVLRFINANDHFFVNLAMVAAKVMADAAHGIPGSSLVTTLSRNGTEFGIRVSGLGDRWFTGPANVPRGLYFPGFGPDDANPDIGDSAITETAGFGGFALAGAPAIVQFIGGTPADAVQATLEMYEITVAEHEVFRIPALDFRGTPVGIDLRSVVRSGILPVIDTGIAHREPGIGQVGAGIVRPPARCFTEAYRAFEDAYLAGHSRTTTLESRGMA
SIO_010081: TRD_RS02645
subclass of: SO_0000673
so part of: TRD_RS02645
location: complement(570358..571818)
location: region:570358-571818:-1
so has part: feature:570358-571818:-1:exon

WP_012641976.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:570358-571818:-1:exon

TRD_RS02650
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: fdrA
locus tag: TRD_RS02650
old locus tag: trd_0573
so part of: sequence
location: complement(571841..573385)
location: region:571841-573385:-1
so has part: feature:571841-573385:-1:exon
subclass of: SO_0000010

position:571841:-1
position: 571841
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:573385:-1
position: 573385
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:571841-573385:-1:exon

TRD_RS02650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: fdrA
locus tag: TRD_RS02650
old locus tag: trd_0573
inference: COORDINATES: protein motif:HMM:NF004760.0
GO function: GO:0003824 - catalytic activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: acyl-CoA synthetase FdrA
translation: MVVRIRIEPNSYFDSVALMAVASVVNRLPGVDLAALLMGTSANLELLRDSGLWDERLETVSPNDLVIAVRASDDAAAERAIDEAVHRLRSSARTSQVSEAKVTLRTLRTALRQVSQASVVAISVPGPYAPIEAEEALRADRHVFLFSDNVPIEEEVRLKELAQERGLLLMGPDCGTAFIAGLGLGFMNAVRRGPIGIVAAAGTGLQQLASLIDWFGSGISHGIGTGGRDLDARVGGRTMLAGLEALAHDPATQVIVLVSKPPAPEVAEKVLAFAAACGKPVVATFIGQTAPVTEGVHVAANLTEAARLAVHLATGQSLADLDLPRRQEALARVRAERSRLAPTQRYLRGLYSGGTLCDEAMVLLQPRIGPIRSNIPLQPELRLTDPHRSEEHTFVDLGSDEFTVGRPHPMIDQTIRLERFRREAADPTVAGIVLDLVLGYGAASDPAAELAPAIREARVEAERTGRILPCIVALVGTQSDPQDYARQRRTLEDAGAIVVPSNALAAELAAELIA
SIO_010081: TRD_RS02650
subclass of: SO_0000673
so part of: TRD_RS02650
location: complement(571841..573385)
location: region:571841-573385:-1
so has part: feature:571841-573385:-1:exon

WP_012641977.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:571841-573385:-1:exon

TRD_RS13505
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS13505
old locus tag: trd_0575
so part of: sequence
location: complement(573793..574644)
location: region:573793-574644:-1
so has part: feature:573793-574644:-1:exon
subclass of: SO_0000010

position:573793:-1
position: 573793
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:574644:-1
position: 574644
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:573793-574644:-1:exon

TRD_RS13505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS13505
old locus tag: trd_0575
inference: COORDINATES: protein motif:HMM:NF022834.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2877 domain-containing protein
translation: MTIAVQRLASPILPLLTSPSRTLTVVAAYPRAAYATDGTTWLSVVTPGALLPPDALQLRTKSPLVALVPTGSQLIAGQGALLLPDGTPLTIDQQTRVWQPTLRTRWTCQWKRARLQALLDELTDPPRGDRFLATTISRSKALLAELIGAIITADRAHIAQQVDRLAGLGPGLTPLGDDLLVGCCLALTLLAARTGEERWSSLRQEIALQAASRTTPRSAAWLQQAARGEYAREFLLVAQALCRGDHPCLPHLLARVTQVGATSGWAVTFGLIATLERSILPPA
SIO_010081: TRD_RS13505
subclass of: SO_0000673
so part of: TRD_RS13505
location: complement(573793..574644)
location: region:573793-574644:-1
so has part: feature:573793-574644:-1:exon

WP_012641978.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:573793-574644:-1:exon

TRD_RS02660
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02660
old locus tag: trd_0577
so part of: sequence
location: 574761..575645
location: region:574761-575645:1
so has part: feature:574761-575645:1:exon
subclass of: SO_0000010

position:574761:1
position: 574761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:575645:1
position: 575645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:574761-575645:1:exon

TRD_RS02660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02660
old locus tag: trd_0577
inference: COORDINATES: protein motif:HMM:NF013134.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: xanthine dehydrogenase family protein subunit M
translation: MKPPRFRYHAPESLDEALAVLAETGDEAKPLAGGQSLIPMLNMRLARPSLLIDLNGLSELAGIELRDGVLVVRAMTRHRAVERSPLVAEHVPLLAEAIPWVGHLPIRTRGTIGGSVAHADPAAEVPGVLVALDGAVRLASRRGERLVSADEFFLDLLTTAAEPDELVTEVHFPLLGPHSGSAWLEIARRHGDYALVGAGAVLVLAEDGRTIQDARLSFIGVAGRPVRARGAEAILRGQSIGEEAWKAAAAAVREELDPPSDLHASAQYRRSVAGVLAERALAIAAARAQGGVAA
SIO_010081: TRD_RS02660
subclass of: SO_0000673
so part of: TRD_RS02660
location: 574761..575645
location: region:574761-575645:1
so has part: feature:574761-575645:1:exon

WP_012641980.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:574761-575645:1:exon

TRD_RS02665
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02665
old locus tag: trd_0578
so part of: sequence
location: 575642..576136
location: region:575642-576136:1
so has part: feature:575642-576136:1:exon
subclass of: SO_0000010

position:575642:1
position: 575642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:576136:1
position: 576136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:575642-576136:1:exon

TRD_RS02665
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02665
old locus tag: trd_0578
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012642493.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: (2Fe-2S)-binding protein
translation: MTAVGSERRVIRVTVNGVPYEREVEARLLLSDFLRHELGLTGTHVGCEHGVCGACTILLDGEPVRSCLLLAVQAHGHELETVEGLAPSERELHPLQQAFWEKHGLQCGYCTPGMLMVLKAFLAENPDPSEEEIREAISGNLCRCTGYQNIVEAARYAAQLMRQS
SIO_010081: TRD_RS02665
subclass of: SO_0000673
so part of: TRD_RS02665
location: 575642..576136
location: region:575642-576136:1
so has part: feature:575642-576136:1:exon

WP_012641981.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:575642-576136:1:exon

TRD_RS02670
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: cutA
locus tag: TRD_RS02670
old locus tag: trd_0579
so part of: sequence
location: 576156..578531
location: region:576156-578531:1
so has part: feature:576156-578531:1:exon
subclass of: SO_0000010

position:576156:1
position: 576156
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:578531:1
position: 578531
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:576156-578531:1:exon

TRD_RS02670
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: cutA
locus tag: TRD_RS02670
old locus tag: trd_0579
EC number: 1.2.5.3
inference: COORDINATES: protein motif:HMM:NF040766.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: aerobic carbon-monoxide dehydrogenase large subunit
translation: MPTRIFGEPVKRAEDPRLLTGHGRYVDDIDLPGQLHAAFLRSPLAHARIRAIDVRAAQEMAGVVAVWTYQDIGPCQRRMPLLIPHPDLTHPATRYALAKDEVNHVGEPVAMVIAESRYVAEDALEAIVVEWEELPPVVDIERAIEPGSPLVHEELGTNVAAHYVGVVGDPEAAFARAAHVFRERLVIERSAGMPLETRAVLATWDPVHELLEVWDTTQAPIVIRNALAALFGLAPTQVRVVAPDVGGGFGCKIMVYPEEVLVPYAAMVLGRPVKWTEDRLEHFVGTNHERLQIHEAEIAVDAEGRIVAIRDRFLHDAGAYTPYGIIVPIITACQLPGPYKVPNYHVEFRAVYSNTVPVSPYRGAGRPHAAFVMERLLDRVADELALDRAEVRRRNFIQPHEFPYDVGLIFQDGAPTRYDSGNYPGMLELLLQQMDYERLVREELPRLRAEGRFVGVGIACYVEGTGIGPYEGATVRVEPTGQVYVATGMPQQGQAHKTVLAQIVAEELQIPLDAVQVFEGDTAHFQFGSGTYASRSAVVCGSAVALAARKVREQGLALAAEELEVAVEDLVVEDGRVFVRGAPERGFTWAQLAQLANPLRYAYAGDLVVRPRPWTGPTLPPGRQPALEATEYYSPPHATWASGAVGALVEVDVATGMVTFRKLWVVHDCGKMINPLVVEGQVHGGIAQGIGGALYEKLHYDENGQLLNASFMDFLMPTAMEIPRMEVAHQETPSPLNPLGVKGVGEAGAIPLPALVAAAVEDALRPFGVRITRMPLDPDTIWRMTHPEETA
SIO_010081: TRD_RS02670
subclass of: SO_0000673
so part of: TRD_RS02670
location: 576156..578531
location: region:576156-578531:1
so has part: feature:576156-578531:1:exon

WP_012641982.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:576156-578531:1:exon

TRD_RS02675
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02675
old locus tag: trd_0580
so part of: sequence
location: 578641..579435
location: region:578641-579435:1
so has part: feature:578641-579435:1:exon
subclass of: SO_0000010

position:578641:1
position: 578641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:579435:1
position: 579435
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:578641-579435:1:exon

TRD_RS02675
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02675
old locus tag: trd_0580
inference: COORDINATES: protein motif:HMM:NF016115.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cyclase family protein
translation: MGSVKLYDLSQPLNQEVSFWPFYPPFEVKYIKRKAEHGVNAQYIMTSNHMGTHLDAPRHFITNGKTIDQIPLEWLYGPGVIVDLSDVLDELDIFTPEMIEQRVEVREGDILFIHTGWHRYAQFGETPDEEKYLLRHPGPHPSIVDWLIAKKIKIWGVDMVSTDHPMNLPIGRFLGRGGLEQWKRVRAICERKFGEKLTELFPEEHYQLTHNALFPHDCIHVENLGGEIGRRELHNRRLTLGVFPWLFKGGEAAFCRVVAFVEEA
SIO_010081: TRD_RS02675
subclass of: SO_0000673
so part of: TRD_RS02675
location: 578641..579435
location: region:578641-579435:1
so has part: feature:578641-579435:1:exon

WP_012641983.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:578641-579435:1:exon

TRD_RS02680
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02680
old locus tag: trd_0581
so part of: sequence
location: 579488..580309
location: region:579488-580309:1
so has part: feature:579488-580309:1:exon
subclass of: SO_0000010

position:579488:1
position: 579488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:580309:1
position: 580309
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:579488-580309:1:exon

TRD_RS02680
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02680
old locus tag: trd_0581
inference: COORDINATES: protein motif:HMM:NF016115.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cyclase family protein
translation: MAIDLARCRVLDLSQDWDIHTPGFALYEGPTVKWIKRVAFERAGGQWISSTLHVGTHLDAPLHFITGGQDIAAIPLNKLVGWACIVDLTRYGIGDYDIYGPEHFEQWERDTGIRIQPGDILVIHTGYHHYYPSDWATDPALRQPDETRYFIKHPGPTRAFAEWVLRRQISWLAVDCASADHPFNTVIRKIRADLVPEFEAKHGKSISELLPDSDYQVMHFALFPHGVIHIENAGGEIDKVLNRRIMVGCFPWRFKGGEAAFCRFVAFVPEDEL
SIO_010081: TRD_RS02680
subclass of: SO_0000673
so part of: TRD_RS02680
location: 579488..580309
location: region:579488-580309:1
so has part: feature:579488-580309:1:exon

WP_012641984.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:579488-580309:1:exon

TRD_RS02685
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02685
old locus tag: trd_0582
so part of: sequence
location: 580321..581298
location: region:580321-581298:1
so has part: feature:580321-581298:1:exon
subclass of: SO_0000010

position:580321:1
position: 580321
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:581298:1
position: 581298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:580321-581298:1:exon

TRD_RS02685
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02685
old locus tag: trd_0582
inference: COORDINATES: protein motif:HMM:TIGR02822.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: zinc-dependent alcohol dehydrogenase family protein
translation: MVLERPGQPLVLQELPVPEPGPGQVLLRIRACGVCRTDLHIVAGELPGPKLPLVLGHQIVGEVVRAGPGANRLVPGQRVGVPWLGWTCGECRYCRSGRENLCDRARFTGYTLDGGFAEYTVADERYCFPIPAGYPDEQAAPLLCAGLIGYRALRFAGEAQRLGFYGFGAAAHILTQVAVWQGRTVYAFTRPGDLESQVFARELGAVWAGGSDESPPEQLEAALIFAPVGALVPQALRAVEKGGIVVCAGIHMSDIPSFPYAWLWEERVIRSVANLTRQDGEAFLSLAPRVPVRTEVQLYRLEEANRALDDLRHGRIRGAAVLVID
SIO_010081: TRD_RS02685
subclass of: SO_0000673
so part of: TRD_RS02685
location: 580321..581298
location: region:580321-581298:1
so has part: feature:580321-581298:1:exon

WP_226980713.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:580321-581298:1:exon

TRD_RS02690
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02690
old locus tag: trd_0583
so part of: sequence
location: complement(581300..583912)
location: region:581300-583912:-1
so has part: feature:581300-583912:-1:exon
subclass of: SO_0000010

position:581300:-1
position: 581300
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:583912:-1
position: 583912
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:581300-583912:-1:exon

TRD_RS02690
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02690
old locus tag: trd_0583
inference: COORDINATES: protein motif:HMM:NF012905.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cation-transporting P-type ATPase
translation: MGGELASSSTSIPTTDPNRGLTEAEVHARRARFGPNELPQPQSPALWRLALAQVTHLFALLLWIAAASASIAGMTELALAIVAVILLNGIFAFLQEYRAERAAARLRSLLPLRVTVRRDGHEIVIDARELVPGDIVILKAGDRVPADVLLLEGIDVAVDVSTFTGESVPINPSPGDAIQAGTSLTRGRAIAVVTATGANTRLAQLARLTAAPRRQPTPLTRELQRLVRIITVLAVSVGLLFFAVAVFLRLPVLDAFVFMLGVTVALVPEGLLPTLTLSLAVAAQRMAERRALVRHLEAVETLGLTTVICTDKTGTLTLNELSVTSIWTPAGSARLFGQGYEPDGESDIEPGAEASVRELARAAALAADGRAVWRDGRWLPLGDPLDTALWVMVHRIGLDPDTIRAKAPVLRTYPFDPHRRRSSVLTESQLIVKGAPENVLPNCRNAEQARQVADRMAAEGLRVIAIASRPVLPGSASDVLDPDTLERELILLGLIGFSDLPRSEAKEAVARCRKAGIRVIMVTGDHPATALAVAREVGLVGDNPLVVTSAQLPPDDTALGALVDRDEVVIARVAPEDKLRIARALQARGHVVAMTGDGVNDAPALRQADVGVAMGRSGTDVAREAADLILLDDNFATIVAAIEQGRTTFQNIRRFLTFHLTDNVAELAPFVIWALSGGRVPLALNVLQILLLDLGTDALPALALGVEPPSPRVLDSPPPRFHLVDRSLLVRAFLVLGPTEALMEMIAFFAVLSSASWQPGMTVPSETILLAASGTAFTAIVLGQGANAIANRSDDRPAWRVGLSGNRALVLALAASCVLLLATLSIPPLARIVGQAPPTALGWFLAALTVPAVMLIDALWKTIVRRQPSG
SIO_010081: TRD_RS02690
subclass of: SO_0000673
so part of: TRD_RS02690
location: complement(581300..583912)
location: region:581300-583912:-1
so has part: feature:581300-583912:-1:exon

WP_052294044.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:581300-583912:-1:exon

TRD_RS02700
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02700
old locus tag: trd_0586
so part of: sequence
location: 585226..585301
location: region:585226-585301:1
so has part: feature:585226-585301:1:exon
subclass of: SO_0000663

position:585226:1
position: 585226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:585301:1
position: 585301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:585226-585301:1:exon

TRD_RS02700
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 309801
locus tag: TRD_RS02700
old locus tag: trd_0586
product: tRNA-Thr
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:585259..585261,aa:Thr,seq:ggt)
SIO_010081: TRD_RS02700
subclass of: SO_0000673
so part of: TRD_RS02700
location: 585226..585301
location: region:585226-585301:1
so has part: feature:585226-585301:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:585226-585301:1:exon

TRD_RS02705
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02705
old locus tag: trd_0587
so part of: sequence
location: 585305..585376
location: region:585305-585376:1
so has part: feature:585305-585376:1:exon
subclass of: SO_0000663

position:585305:1
position: 585305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:585376:1
position: 585376
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:585305-585376:1:exon

TRD_RS02705
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 309801
locus tag: TRD_RS02705
old locus tag: trd_0587
product: tRNA-Thr
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:585337..585339,aa:Thr,seq:cgt)
SIO_010081: TRD_RS02705
subclass of: SO_0000673
so part of: TRD_RS02705
location: 585305..585376
location: region:585305-585376:1
so has part: feature:585305-585376:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:585305-585376:1:exon

TRD_RS14090
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS14090
old locus tag: trd_0594
so part of: sequence
location: 587337..587756
location: region:587337-587756:1
so has part: feature:587337-587756:1:exon
subclass of: SO_0000010

position:587337:1
position: 587337
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:587756:1
position: 587756
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:587337-587756:1:exon

TRD_RS14090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS14090
old locus tag: trd_0594
inference: COORDINATES: protein motif:HMM:NF012264.2
GO function: GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: c-type cytochrome
translation: MRRLLLFGCLLSALLLVACGGGGGRSEEKVTPPPVNAELAAAGKEYFNKYACSTCHSMAGQAGIGPALNGIYGKKVQLEDGSSVVVDDAYLRESILQPDAKTVKGYPKGSMTNVIMPFMPELQKPEVLDALVEYIKSTT
SIO_010081: TRD_RS14090
subclass of: SO_0000673
so part of: TRD_RS14090
location: 587337..587756
location: region:587337-587756:1
so has part: feature:587337-587756:1:exon

WP_012641994.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:587337-587756:1:exon

TRD_RS02720
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: nadC
locus tag: TRD_RS02720
old locus tag: trd_0595
so part of: sequence
location: 588330..589196
location: region:588330-589196:1
so has part: feature:588330-589196:1:exon
subclass of: SO_0000010

position:588330:1
position: 588330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:589196:1
position: 589196
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:588330-589196:1:exon

TRD_RS02720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: nadC
locus tag: TRD_RS02720
old locus tag: trd_0595
EC number: 2.4.2.19
inference: COORDINATES: protein motif:HMM:TIGR00078.1
GO function: GO:0004514 - nicotinate-nucleotide diphosphorylase (carboxylating) activity [Evidence IEA]
GO process: GO:0019363 - pyridine nucleotide biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: carboxylating nicotinate-nucleotide diphosphorylase
translation: MVAPDWDIPLLVLRESVCAWLREDLGYGDRTTLAVVSPGATGTAAIVMRQPGVLCGMPVIEAVFAELDTRLRVTTMCREGELVPEGTVVGQVVGPLRGILAGERLALNLLQRLSGIATLTRRFVDAVAGTGVMILDTRKTTPGLRLLEKYAVRVGGGRNHRFGLFDGVLIKDNHVRVAGSVREAVQRVRNVIPHTMLVEVEVTTLEELDEALAAGADWILLDNMDVETMREAVRRVAGRAKLEASGGVTLERVRAIAETGVDAISVGALTHSASALDISLEVVAVDGR
SIO_010081: TRD_RS02720
subclass of: SO_0000673
so part of: TRD_RS02720
location: 588330..589196
location: region:588330-589196:1
so has part: feature:588330-589196:1:exon

WP_052294104.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:588330-589196:1:exon

TRD_RS02725
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: nadA
locus tag: TRD_RS02725
old locus tag: trd_0596
so part of: sequence
location: 589216..590139
location: region:589216-590139:1
so has part: feature:589216-590139:1:exon
subclass of: SO_0000010

position:589216:1
position: 589216
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:590139:1
position: 590139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:589216-590139:1:exon

TRD_RS02725
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: nadA
locus tag: TRD_RS02725
old locus tag: trd_0596
EC number: 2.5.1.72
inference: COORDINATES: protein motif:HMM:NF006879.0
GO function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0008987 - quinolinate synthetase A activity [Evidence IEA]
GO process: GO:0009435 - NAD biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: quinolinate synthase NadA
translation: MEQQELVREILRLKEERRAVILAHSYQRPEVQDIADFVGDSLGLSREATRTDADVIVFCGVHFMAETAAILNPEKTVLLPDLEAGCSLAETINPEDVRAWREQHPDGIVVAYVNTSAAVKAMADICCTSANAVEVVASLPEDRPIFFVPDMFLGAHVERVTGRKLDIWLGECHVHAGIRSEDLAAQLAAHPDAEFLIHPECGCSSTCIFLRPDAKLLSTEGMVRYAAQSAAREFVVATEVGILHRLHQKAPGKRFIPVREDAICHYMKRVTLEKVYESLRDLKYVITVPEEIAVPARRALEAMLALG
SIO_010081: TRD_RS02725
subclass of: SO_0000673
so part of: TRD_RS02725
location: 589216..590139
location: region:589216-590139:1
so has part: feature:589216-590139:1:exon

WP_012641996.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:589216-590139:1:exon

TRD_RS02730
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02730
old locus tag: trd_0597
so part of: sequence
location: complement(590386..591450)
location: region:590386-591450:-1
so has part: feature:590386-591450:-1:exon
subclass of: SO_0000010

position:590386:-1
position: 590386
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:591450:-1
position: 591450
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:590386-591450:-1:exon

TRD_RS02730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02730
old locus tag: trd_0597
inference: COORDINATES: protein motif:HMM:NF024772.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter substrate-binding protein
translation: MFLADRFTRRRFFALGAIALATACRRGAGSPPTETAPTSTPPALGPTPASGQLEAVSVALDWYPWSNHTGLLMAQERGFFRGQGLEVTLDVPANPEDVLKLVATGRNTFGISYQTDVLLARAEGIPIVSIAALVQHPLNSVMALERSGITRPRDLVGKQVGYPGLPSDEALLATMLETDGAHLDDVKLVNVGYELVRALLSGQVDAVIGAYWVHESILIEQQGERPVILRVEQWGVPDFYELVMVTSEQQVREQPDRVQRFVGAMIQGYREAAADLDGAVQLLVRKYPETNQTLEERGIRLLAPLWTEGVPIFGWQEEKRWTDYAAWMRSRGLLHGDLDARLAFTNRFVEAARE
SIO_010081: TRD_RS02730
subclass of: SO_0000673
so part of: TRD_RS02730
location: complement(590386..591450)
location: region:590386-591450:-1
so has part: feature:590386-591450:-1:exon

WP_012641997.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:590386-591450:-1:exon

TRD_RS02735
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02735
old locus tag: trd_0598
so part of: sequence
location: complement(591464..592222)
location: region:591464-592222:-1
so has part: feature:591464-592222:-1:exon
subclass of: SO_0000010

position:591464:-1
position: 591464
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:592222:-1
position: 592222
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:591464-592222:-1:exon

TRD_RS02735
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02735
old locus tag: trd_0598
inference: COORDINATES: protein motif:HMM:NF012738.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter permease
translation: MMRDRVLPSLLLITALFAWELACRVFAVPDWVLPPPSAILAALLRDYRLLLFHLSVTMQEIGLGLIVSIVLAIVLAIGIVASRLIERSVYPLVVASQAIPIVALAPLLLIWFGYGLTPKVIVVVLICFFPIAVNMVDGLRGVDHELIDMVRSLGASKWQTLRFVRLPAALPAFFSGLRVAAAVSVIGALIGEWIGASAGLGYLMIRAAAQFHTDRVFAAVLVSALVSIALFASVTWLERQTLPWRTRPRTEP
SIO_010081: TRD_RS02735
subclass of: SO_0000673
so part of: TRD_RS02735
location: complement(591464..592222)
location: region:591464-592222:-1
so has part: feature:591464-592222:-1:exon

WP_012641998.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:591464-592222:-1:exon

TRD_RS02740
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02740
old locus tag: trd_0599
so part of: sequence
location: complement(592212..593015)
location: region:592212-593015:-1
so has part: feature:592212-593015:-1:exon
subclass of: SO_0000010

position:592212:-1
position: 592212
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:593015:-1
position: 593015
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:592212-593015:-1:exon

TRD_RS02740
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02740
old locus tag: trd_0599
inference: COORDINATES: protein motif:HMM:NF012235.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter ATP-binding protein
translation: MSRVDTDWRLELRGVTKVFQRDQLQVHALGPLDLRVADGEFVSIIGPSGCGKSTLLDMIAGLEQPTSGEIWLDGAPAPYRLGKVAYMHQRDLLLPWRTVLENAILPLEVKRIPRRQAIERAMPWLRRFGLAEFASSYPAQLSGGMRQRAAFLRTLLTQCPLMLLDEPFGALDALTRSSMQEWLLMLWEELDRTVILVTHDVEEAVLLSDRVVVLSQRPGTIVADIPVDLPRTRTYAIVTDQAFVSLKARLLATLRRQPTLGVVTDDA
SIO_010081: TRD_RS02740
subclass of: SO_0000673
so part of: TRD_RS02740
location: complement(592212..593015)
location: region:592212-593015:-1
so has part: feature:592212-593015:-1:exon

WP_143714606.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:592212-593015:-1:exon

regulatory
type: Feature
subclass of: SO_0000001
RO_0002162: 309801
regulatory class: riboswitch
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF00059
inference: COORDINATES: profile:INFERNAL:1.1.4
note: TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
bound moiety: thiamine pyrophosphate
so part of: sequence
location: complement(593158..593274)
location: region:593158-593274:-1
so has part: feature:593158-593274:-1:region

position:593158:-1
position: 593158
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:593274:-1
position: 593274
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:593158-593274:-1:region

TRD_RS02745
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02745
old locus tag: trd_0601
so part of: sequence
location: 594189..594566
location: region:594189-594566:1
so has part: feature:594189-594566:1:exon
subclass of: SO_0000010

position:594189:1
position: 594189
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:594566:1
position: 594566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:594189-594566:1:exon

TRD_RS02745
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02745
old locus tag: trd_0601
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGTVPTYRDVLMAVLSPGALVVLERLTPLICALYDLDLLLDYPVADQQQGSLRERLSERLERIVALLPSDVSPMANEVFTAVETLVTDVLGRELFLGEEIRRLELLDEAFRNDPLLFQLVRGRAN
SIO_010081: TRD_RS02745
subclass of: SO_0000673
so part of: TRD_RS02745
location: 594189..594566
location: region:594189-594566:1
so has part: feature:594189-594566:1:exon

WP_012642001.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:594189-594566:1:exon

TRD_RS02750
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02750
old locus tag: trd_0602
so part of: sequence
location: complement(594628..595050)
location: region:594628-595050:-1
so has part: feature:594628-595050:-1:exon
subclass of: SO_0000010

position:594628:-1
position: 594628
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:595050:-1
position: 595050
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:594628-595050:-1:exon

TRD_RS02750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02750
old locus tag: trd_0602
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
GO function: GO:0005507 - copper ion binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: sulfocyanin-like copper-binding protein
translation: MTRRALLSSALVMSLAACRRGGQAGVTTVTVELGEYYIKVDKAEVPAGKVRFVAKNVGQMEHELIVLRTDLPADRLPYNEAEQKAEEEQAGEVLGEIEPEDLPPGKTAEMTLDLTAGHYVLLCNIPTHYKQGMHLDLRAR
SIO_010081: TRD_RS02750
subclass of: SO_0000673
so part of: TRD_RS02750
location: complement(594628..595050)
location: region:594628-595050:-1
so has part: feature:594628-595050:-1:exon

WP_143714607.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:594628-595050:-1:exon

TRD_RS02755
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02755
old locus tag: trd_0603
so part of: sequence
location: complement(595403..596314)
location: region:595403-596314:-1
so has part: feature:595403-596314:-1:exon
subclass of: SO_0000010

position:595403:-1
position: 595403
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:596314:-1
position: 596314
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:595403-596314:-1:exon

TRD_RS02755
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02755
old locus tag: trd_0603
EC number: 3.1.26.11
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012642003.1
GO function: GO:0016891 - endoribonuclease activity, producing 5'-phosphomonoesters [Evidence IEA]
GO process: GO:0042779 - tRNA 3'-trailer cleavage [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribonuclease Z
translation: MVDVCLLGTGGMMPLPDRWLSALLVRCEGHVVLLDCGEGTQISWRYTGWSFRDLDAIVFTHLHADHVAGLPGILYALAFADRQEPVRIIGPVGTAQVVAALRSIVPTLPFPVETLELSGTSELELPGGLLLRALPVTHRIPCFAYTLHRPRGRRFDPQRAQALGIPMTLWHRLQRGETVEFAGQLLTPDLVLGPPRRGITVAFVTDTRPTPELPGFVAGADLLVCEGMYGDTALLPRAIERGHMLMQEAAELARAASVERLWLTHFSPSLTDPEAWLPAIRAIFPASEIGPVHQTVTLRYRDA
SIO_010081: TRD_RS02755
subclass of: SO_0000673
so part of: TRD_RS02755
location: complement(595403..596314)
location: region:595403-596314:-1
so has part: feature:595403-596314:-1:exon

WP_012642003.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:595403-596314:-1:exon

TRD_RS02760
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: ggt
locus tag: TRD_RS02760
old locus tag: trd_0604
so part of: sequence
location: 596430..598025
location: region:596430-598025:1
so has part: feature:596430-598025:1:exon
subclass of: SO_0000010

position:596430:1
position: 596430
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:598025:1
position: 598025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:596430-598025:1:exon

TRD_RS02760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: ggt
locus tag: TRD_RS02760
old locus tag: trd_0604
EC number: 2.3.2.2
inference: COORDINATES: protein motif:HMM:TIGR00066.1
GO process: GO:0006750 - glutathione biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: gamma-glutamyltransferase
translation: MRKVVTGRPTTRATEGMVATPHYLATLAGLRVLQDGGNAVDAAVAANAVLTVVYPHMCSLGGDAFFLIWEPREQRLVGLNGSGRAPQGISLAALRDRGFREVPAKGPWGVTVPGAVDAWATVLARYGTRDLAALLESALRYAEEGFPVSPLLARAIAAEEEIFRRQEAATRQFLPGGRPPRSGQLLRQPDLAASLRLIAEHGPEAFYRGPIAEAIVAVLRSAGGAMTLDDLAAHRSEWVEPLRSTYRGVEVIELPPNTQGVTALQLLNIVEGFPIGADEWGSPRLLHLMLEAKKLAFADRDRYLGDPAFVDVPVARLLSKAYAAELRSRIDPDRASVPPPPQWDSDTIYLCVVDRDGRAVSLIQSIYQSFGSGLVAAGIVLHNRGACFVLDEESPNALMPGKRPLHTLIPGMMVRDGRPWVVFGTMGGHSQPVIHLQLVNGLVDFGFEPQEAIEVARWVSRREPGEAGETIYLEPELAERAAGELARLGHRVEIVERWSSLMGHAHLIMIGDDGVLSGASDPRAEGYALGW
SIO_010081: TRD_RS02760
subclass of: SO_0000673
so part of: TRD_RS02760
location: 596430..598025
location: region:596430-598025:1
so has part: feature:596430-598025:1:exon

WP_226980714.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:596430-598025:1:exon

TRD_RS02765
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02765
old locus tag: trd_0605
so part of: sequence
location: complement(598029..598547)
location: region:598029-598547:-1
so has part: feature:598029-598547:-1:exon
subclass of: SO_0000010

position:598029:-1
position: 598029
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:598547:-1
position: 598547
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:598029-598547:-1:exon

TRD_RS02765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02765
old locus tag: trd_0605
inference: COORDINATES: protein motif:HMM:NF022734.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF3090 family protein
translation: MGRRHEYPELTVLEAEAIGQPGQRRFRLIAGVGLDLVSLWMEKEQLQALGLAIEQLFEQLRLAGLVRSRISEQPAARTAPLPPDLPEYVVGKMAIGYDEEHQRIAIFAHDIEQDEDDDPVFAGRASLPAAKALARQIAQVIAAGRPRCPRCGAVIGPEGHVCPHDNGHLPLE
SIO_010081: TRD_RS02765
subclass of: SO_0000673
so part of: TRD_RS02765
location: complement(598029..598547)
location: region:598029-598547:-1
so has part: feature:598029-598547:-1:exon

WP_041436404.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:598029-598547:-1:exon

TRD_RS02770
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02770
old locus tag: trd_0607
so part of: sequence
location: 598898..600121
location: region:598898-600121:1
so has part: feature:598898-600121:1:exon
subclass of: SO_0000010

position:598898:1
position: 598898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:600121:1
position: 600121
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:598898-600121:1:exon

TRD_RS02770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02770
old locus tag: trd_0607
EC number: 3.2.1.23
inference: COORDINATES: protein motif:HMM:NF014502.2
GO component: GO:0009341 - beta-galactosidase complex [Evidence IEA]
GO function: GO:0004565 - beta-galactosidase activity [Evidence IEA]
GO process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: beta-galactosidase
translation: MSGRRPLVFVAIVTMLALVGCRGPAVYPTVTPTRSTLLGSVPTPSHESGAVGTPVLEASQATPRGRAASGFAYGFNVAWRGDEDGAAFNQRTAEMVRQAGFQWVRFQVRWESLEPRPGEWDFRPIDRVLPVYEAAGLSVLASVVGAPEWARAANGGIVADPATFREAMRRLASRYRGRIHAWEIWNEQNLAHELHGPVRVEPYCAVLRAGYEGVKAGDPEALVVFGGLTPTGVNDPTIAVDDVAYLEAFYALDGGSCTRYFDVLGAHANATLNPPDTLWPERPGPGPGWRDHPSFYFRRVEQLRAVMERHGDRRPVWITEFGWTTNNPAPGYEYGQYVSEEQQAEYLVRAFEIARTRWPWVTGMFVWNLNFSTIVGPEDEKGPWSVLNPDWSPRPAYRALSAMPKQP
SIO_010081: TRD_RS02770
subclass of: SO_0000673
so part of: TRD_RS02770
location: 598898..600121
location: region:598898-600121:1
so has part: feature:598898-600121:1:exon

WP_226980715.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:598898-600121:1:exon

TRD_RS02775
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02775
old locus tag: trd_0606
so part of: sequence
location: complement(600118..601149)
location: region:600118-601149:-1
so has part: feature:600118-601149:-1:exon
subclass of: SO_0000010

position:600118:-1
position: 600118
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:601149:-1
position: 601149
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:600118-601149:-1:exon

TRD_RS02775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02775
old locus tag: trd_0606
inference: COORDINATES: protein motif:HMM:NF014788.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AIR synthase family protein
translation: MSDRPLPTGKLPPQLLAEFLGNLSPDPSVLLGPGIGHDAAVIQIDTIRLVFKSDPITFATEAIGWYALNVNANDVACLGARPRWFLATVLLPEGTTAHDAQVILDDLARAAERLGVSVVGGHTEITVGLDRPIVAGTMIGELTTEYVLSPARVRPGDALLLVRGIAIEGTALLARECRQTLERMLDQDLLARCRRFLYEPGISIVPAATLLLERLGEDLRYLHDPTEGGLATGLHEVAVACGTGLVVSEEAILVYPETRAVCTALGLDPLGLIASGALLAVVTPESVEHALDTLAQHDIPATQLGWLDPDPGRRVLIGSTGERPLPVFQVDEVARLFASGGCV
SIO_010081: TRD_RS02775
subclass of: SO_0000673
so part of: TRD_RS02775
location: complement(600118..601149)
location: region:600118-601149:-1
so has part: feature:600118-601149:-1:exon

WP_012642007.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:600118-601149:-1:exon

TRD_RS02780
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02780
old locus tag: trd_0608
so part of: sequence
location: complement(601154..602281)
location: region:601154-602281:-1
so has part: feature:601154-602281:-1:exon
subclass of: SO_0000010

position:601154:-1
position: 601154
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:602281:-1
position: 602281
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:601154-602281:-1:exon

TRD_RS02780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
locus tag: TRD_RS02780
old locus tag: trd_0608
EC number: 2.7.1.11
inference: COORDINATES: protein motif:HMM:NF002872.1
GO process: GO:0006002 - fructose 6-phosphate metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-dependent 6-phosphofructokinase
translation: MAERSLRRIGVLTGGGDAPGLNAALRAVVKTAILRYGWTVIGFEDGYEGAILGRARQLGLDDVRGLLVRGGTILGASNRANPFFFAHPEQGDTEPRDHSRTLLATLERIGIDALIVIGGEGSLSIAHRLNEMGLRVIGIPKTIDNDVRGTLQTIGFDTAVTTATEAIDRLHTTAESHHRVMLVELMGRDAGWIALSAGVAGGADVILIPEIPFVLDRVVEVIRGRRQRRRSFTIVAVAEGARPLDGEAVFERTGPLPYQRKYGGISLVLQKQLSRILPTEVRAVVLGHLQRGGTPTPTDRALATALGSAAVDALADDDDGVMVAIRAHPAGQATWGIVRVPLAEVARGPRLVPLDHPLVRAARGIGISFAQQDEE
SIO_010081: TRD_RS02780
subclass of: SO_0000673
so part of: TRD_RS02780
location: complement(601154..602281)
location: region:601154-602281:-1
so has part: feature:601154-602281:-1:exon

WP_012642008.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:601154-602281:-1:exon

TRD_RS02785
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: proS
locus tag: TRD_RS02785
old locus tag: trd_0609
so part of: sequence
location: 602437..603891
location: region:602437-603891:1
so has part: feature:602437-603891:1:exon
subclass of: SO_0000010

position:602437:1
position: 602437
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:603891:1
position: 603891
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:602437-603891:1:exon

TRD_RS02785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 309801
gene: proS
locus tag: TRD_RS02785
old locus tag: trd_0609
EC number: 6.1.1.15
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016292446.1
GO function: GO:0004827 - proline-tRNA ligase activity [Evidence IEA]
GO process: GO:0006433 - prolyl-tRNA aminoacylation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: proline--tRNA ligase
translation: MTTDRKYVEELIEQEDDFDRWYVEVIQKAELADESPVRGTRVIRPYGFALWENMQAELDRRIKATGVQNAYFPLFIPKSFLEREAEHIKGFAPEVAWVTRGGDKELEEWLAVRPTSESIICPMFARWVQSYRDLPILINQWCSVVRWEERPRAFLRTLEFLWQEGHTVHATLEEAEERARLMLEVYRDFVESELAIPVIPGQKTESEKFAGALRTYTIEAMMGGKHWALQSATSHNLGDHFGKVFDITFLDREGKRRYVFNTSWGLSHRTIGAMVMVHGDDRGLKLPPRVAPIQVVIVPIWRKDEERRQVEETVDRVRAMLRRAVRVHADLRDDKTPGWKFNDWDLKGVPIRLEIGPRDVASDQVTLVRRDVLGQRQAVPIANLVGAVQSELESIQVSLFRAARAMLERYTEDVRDYEVLKERVATNAGFNRAFWCGDPACEARVKAETKATVRCIPFEQPAELEPCLVCGAPGKYQVIWARAY
SIO_010081: TRD_RS02785
subclass of: SO_0000673
so part of: TRD_RS02785
location: 602437..603891
location: region:602437-603891:1
so has part: feature:602437-603891:1:exon

WP_012642009.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:602437-603891:1:exon

TRD_RS02790
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02790
old locus tag: trd_0610
so part of: sequence
location: complement(603962..604048)
location: region:603962-604048:-1
so has part: feature:603962-604048:-1:exon
subclass of: SO_0000663

position:603962:-1
position: 603962
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:604048:-1
position: 604048
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:603962-604048:-1:exon

TRD_RS02790
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 309801
locus tag: TRD_RS02790
old locus tag: trd_0610
product: tRNA-Ser
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(604012..604014),aa:Ser,seq:gga)
SIO_010081: TRD_RS02790
subclass of: SO_0000673
so part of: TRD_RS02790
location: complement(603962..604048)
location: region:603962-604048:-1
so has part: feature:603962-604048:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:603962-604048:-1:exon

TRD_RS02795
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02795
old locus tag: trd_0611
so part of: sequence
location: complement(604291..604381)
location: region:604291-604381:-1
so has part: feature:604291-604381:-1:exon
subclass of: SO_0000663

position:604291:-1
position: 604291
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:604381:-1
position: 604381
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:604291-604381:-1:exon

TRD_RS02795
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 309801
locus tag: TRD_RS02795
old locus tag: trd_0611
product: tRNA-Ser
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(604345..604347),aa:Ser,seq:cga)
SIO_010081: TRD_RS02795
subclass of: SO_0000673
so part of: TRD_RS02795
location: complement(604291..604381)
location: region:604291-604381:-1
so has part: feature:604291-604381:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:604291-604381:-1:exon

TRD_RS02800
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
locus tag: TRD_RS02800
old locus tag: trd_0612
so part of: sequence
location: complement(604419..604494)
location: region:604419-604494:-1
so has part: feature:604419-604494:-1:exon
subclass of: SO_0000663

position:604419:-1
position: 604419
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:604494:-1
position: 604494
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:604419-604494:-1:exon

TRD_RS02800
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 309801
locus tag: TRD_RS02800
old locus tag: trd_0612
product: tRNA-Arg
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(604459..604461),aa:Arg,seq:gcg)
SIO_010081: TRD_RS02800
subclass of: SO_0000673
so part of: TRD_RS02800
location: complement(604419..604494)
location: region:604419-604494:-1
so has part: feature:604419-604494:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:604419-604494:-1:exon

TRD_RS02805
type: Gene
subclass of: SO_0000704
RO_0002162: 309801
gene: rpe
locus tag: TRD_RS02805
old locus tag: trd_0613
so part of: sequence
location: complement(604730..605437)
location: region:604730-605437:-1
so has part: feature:604730-605437:-1:exon
subclass of: SO_0000010

position:604730:-1
position: 604730
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:605437:-1
position: 605437
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:604730-605437:-1:exon