Haloferax volcanii DS2 plasmid pHV1, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.
The complete genome sequence of Haloferax volcanii DS2, a model archaeon
Submitted (04-JUN-2021) Computational Biology Group, Max-Planck Institute of Biochemistry, Am Klopferspitz 18, Martinsreid D-82152, Germany
Submitted (14-MAY-2020) Computational Biology Group, Max-Planck Institute of Biochemistry, Am Klopferspitz 18, Martinsreid D-82152, Germany
Submitted (15-SEP-2016) Computational Biology Group, Max-Planck Institute of Biochemistry, Am Klopferspitz 18, Martinsreid D-82152, Germany
Submitted (04-FEB-2010) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP001957.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/12/2023 12:20:58\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,067\nCDSs (total) :: 4,006\nGenes (coding) :: 3,921\nCDSs (with protein) :: 3,921\nGenes (RNA) :: 61\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 53\nncRNAs :: 2\nPseudo Genes (total) :: 85\nCDSs (without protein) :: 85\nPseudo Genes (ambiguous residues) :: 0 of 85\nPseudo Genes (frameshifted) :: 42 of 85\nPseudo Genes (incomplete) :: 44 of 85\nPseudo Genes (internal stop) :: 21 of 85\nPseudo Genes (multiple problems) :: 18 of 85\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:TIGR02928.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_013035684.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013035318.1
type II toxin-antitoxin system HicA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004045389.1
COORDINATES: similar to AA sequence:RefSeq:WP_014051965.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035120.1
IS4-like element ISHvo12 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_008006532.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008426223.1
COORDINATES: similar to AA sequence:RefSeq:WP_004060793.1
GO:0015074 - DNA integration [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
integrase core domain-containing protein
COORDINATES: protein motif:HMM:NF013980.2
COORDINATES: protein motif:HMM:NF021897.2
type IV secretion system DNA-binding domain-containing protein
ISH3-like element ISHvo21 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_004977086.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035611.1
ISH3-like element ISH51 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_008526026.1
COORDINATES: similar to AA sequence:RefSeq:WP_004049964.1
COORDINATES: similar to AA sequence:RefSeq:WP_008526920.1
COORDINATES: similar to AA sequence:RefSeq:WP_004049969.1
COORDINATES: protein motif:HMM:NF024783.2
COORDINATES: similar to AA sequence:RefSeq:WP_013035724.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488132.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488131.1
COORDINATES: similar to AA sequence:RefSeq:WP_005577881.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035119.1
COORDINATES: similar to AA sequence:RefSeq:WP_004045436.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182271.1
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_008605323.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_013035018.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS1595-like element ISHvo6 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_008387670.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007977921.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004043317.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043318.1
IS1595-like element ISHvo5 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_015409529.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004971330.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035688.1
IS5-like element ISHvo4 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_013035678.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035180.1
IS4-like element ISHvo13 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_004971326.1
COORDINATES: similar to AA sequence:RefSeq:WP_004045462.1
COORDINATES: similar to AA sequence:RefSeq:WP_004045460.1
COORDINATES: similar to AA sequence:RefSeq:WP_013440774.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004971318.1
COORDINATES: similar to AA sequence:RefSeq:WP_004971315.1
GO:0050131 - N-methyl-L-amino-acid oxidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076612288.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035722.1
IS630-like element ISHvo8 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_013035723.1