Exiguobacterium profundum strain TSS-3 plasmid pEprTSS-3, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Bacillales Family XII. Incertae Sedis; Exiguobacterium.
Complete genome sequence of Exiguobacterium profundum TSS-3 isolated from an extremely saline-alkaline spring located in Ixtapa, Chiapas-Mexico
Submitted (13-OCT-2022) Ecological Genomics, Center for Genomic Sciences, Av. Universidad, Cuernavaca, Morelos 62210, Mexico
REFSEQ INFORMATION: The reference sequence is identical to\nCP109618.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 20-JUN-2022\nAssembly Method :: unicycler v. 0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 420.0x\nSequencing Technology :: Illumina NovaSeq; Oxford Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/08/2023 16:15:19\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,005\nCDSs (total) :: 2,907\nGenes (coding) :: 2,876\nCDSs (with protein) :: 2,876\nGenes (RNA) :: 98\nrRNAs :: 9, 9, 9 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 9, 9 (5S, 16S, 23S)\ntRNAs :: 67\nncRNAs :: 4\nPseudo Genes (total) :: 31\nCDSs (without protein) :: 31\nPseudo Genes (ambiguous residues) :: 0 of 31\nPseudo Genes (frameshifted) :: 13 of 31\nPseudo Genes (incomplete) :: 20 of 31\nPseudo Genes (internal stop) :: 5 of 31\nPseudo Genes (multiple problems) :: 6 of 31\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
sediment of an extremely saline-alkaline spring
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_016510962.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF020904.2
COORDINATES: similar to AA sequence:RefSeq:WP_012726182.1