Sciurus carolinensis chromosome Y, mSciCar1.2, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Sciurinae; Sciurini; Sciurus.
REFSEQ INFORMATION: The reference sequence is identical to\nLR738610.1.\nAssembly name: mSciCar1.2\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Wellcome Sanger Institute on\n2020/07/31. The original whole-genome shotgun project has the\naccession CACRXI000000000.2.\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Updated annotation\nAnnotation Name :: GCF_902686445.1-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Best-placed RefSeq; Gnomon;\n cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/03/2023\n##Genome-Annotation-Data-END##
heat shock factor protein 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 18% coverage of the annotated genomic feature by RNAseq alignments
peptidyl-prolyl cis-trans isomerase NIMA-interacting 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 68% coverage of the annotated genomic feature by RNAseq alignments
U6 spliceosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:12.0:RF00026
Derived by automated computational analysis using gene prediction method: cmsearch.
uncharacterized LOC124973007; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
putative olfactory receptor 3A4; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
inositol 1,4,5-trisphosphate receptor-interacting protein-like 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 9% coverage of the annotated genomic feature by RNAseq alignments
solute carrier family 2, facilitated glucose transporter member 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins
inhibitor of growth protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins
suppression of tumorigenicity 18 protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
suppression of tumorigenicity 18 protein-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: suppression of tumorigenicity 18 protein-like
cyclin-I-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
la-related protein 1B-like; Derived by automated computational analysis using gene prediction method: Gnomon.
telomere length and silencing protein 1 homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
serine protease 52-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon.
RNA-binding motif protein, X chromosome-like; Derived by automated computational analysis using gene prediction method: Gnomon.
RNA-binding motif protein, X chromosome-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 35 Proteins
uncharacterized LOC124973014; Derived by automated computational analysis using gene prediction method: Gnomon.
porimin-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 42% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 46% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC124973015; Derived by automated computational analysis using gene prediction method: Gnomon.
BCL-6 corepressor-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
testis-specific Y-encoded protein 9-like; Derived by automated computational analysis using gene prediction method: Gnomon.
testis-specific Y-encoded protein 9-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 33 Proteins
ubiquitin-like modifier-activating enzyme 1; Derived by automated computational analysis using gene prediction method: Gnomon.
ubiquitin-like modifier-activating enzyme 1, transcript variant X3
COORDINATES: polyA evidence [ECO:0006239]
ubiquitin-like modifier-activating enzyme 1, transcript variant X2
ubiquitin-like modifier-activating enzyme 1, transcript variant X4
ubiquitin-like modifier-activating enzyme 1, transcript variant X1
ubiquitin-like modifier-activating enzyme 1, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
ubiquitin-like modifier-activating enzyme 1 isoform X2
ubiquitin-like modifier-activating enzyme 1 isoform X1
ubiquitin-like modifier-activating enzyme 1 isoform X3
ubiquitin-associated protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
XK related 3; Derived by automated computational analysis using gene prediction method: Gnomon.
heat shock transcription factor, Y-linked-like; Derived by automated computational analysis using gene prediction method: Gnomon.
heat shock transcription factor, Y-linked-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
sex determining region Y; Derived by automated computational analysis using gene prediction method: Gnomon.
probable U3 small nucleolar RNA-associated protein 11; Derived by automated computational analysis using gene prediction method: Gnomon.
ubiquitin carboxyl-terminal hydrolase 25-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 5% coverage of the annotated genomic feature by RNAseq alignments
eukaryotic translation initiation factor 1A, X-chromosomal-like; Derived by automated computational analysis using gene prediction method: Gnomon.
eukaryotic translation initiation factor 1A, X-chromosomal-like, transcript variant X2
eukaryotic translation initiation factor 1A, X-chromosomal-like, transcript variant X1
eukaryotic translation initiation factor 1A, X-chromosomal-like, transcript variant X3
eukaryotic translation initiation factor 1A, X-chromosomal-like, transcript variant X5
eukaryotic translation initiation factor 1A, X-chromosomal-like, transcript variant X4
eukaryotic translation initiation factor 1A, X-chromosomal-like isoform X1
eukaryotic translation initiation factor 1A, X-chromosomal-like isoform X3
uncharacterized protein LOC124973027 isoform X4
eukaryotic translation initiation factor 1A, X-chromosomal-like isoform X2
eukaryotic translation initiation factor 1A, Y-chromosomal-like isoform X5
eukaryotic translation initiation factor 2 subunit 3, X-linked-like; Derived by automated computational analysis using gene prediction method: Gnomon.
eukaryotic translation initiation factor 2 subunit 3, X-linked-like
zinc finger X-chromosomal protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger X-chromosomal protein-like, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 30 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
zinc finger X-chromosomal protein-like, transcript variant X1
zinc finger X-chromosomal protein-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
zinc finger X-chromosomal protein-like, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
zinc finger X-chromosomal protein-like, transcript variant X2
zinc finger X-chromosomal protein-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
zinc finger X-chromosomal protein-like isoform X1
zinc finger X-chromosomal protein-like isoform X2
zinc finger X-chromosomal protein-like isoform X3
60S ribosomal protein L21-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
protein WWC3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 80% coverage of the annotated genomic feature by RNAseq alignments