Campylobacter lari RM2100 plasmid pCL2100, complete sequence.
Bacteria; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter.
The complete genome sequence and analysis of the human pathogen Campylobacter lari
Submitted (25-JAN-2008) Produce Safety and Microbiology, USDA, ARS, WRRC, 800 Buchanan St., Albany, CA 94710, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP000933.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/09/2022 16:00:20\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 1,634\nCDSs (total) :: 1,576\nGenes (coding) :: 1,552\nCDSs (with protein) :: 1,552\nGenes (RNA) :: 58\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 3\nPseudo Genes (total) :: 24\nCDSs (without protein) :: 24\nPseudo Genes (ambiguous residues) :: 0 of 24\nPseudo Genes (frameshifted) :: 12 of 24\nPseudo Genes (incomplete) :: 11 of 24\nPseudo Genes (internal stop) :: 2 of 24\nPseudo Genes (multiple problems) :: 1 of 24\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_002864936.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019109209.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0140658 - ATP-dependent chromatin remodeler activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002801139.1
COORDINATES: similar to AA sequence:RefSeq:WP_016647524.1
COORDINATES: similar to AA sequence:RefSeq:WP_012000853.1
COORDINATES: similar to AA sequence:RefSeq:WP_016045113.1
COORDINATES: protein motif:HMM:NF016820.2
COORDINATES: similar to AA sequence:RefSeq:WP_004276293.1
VirB4 family type IV secretion/conjugal transfer ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_002857805.1
COORDINATES: similar to AA sequence:RefSeq:WP_002795272.1
COORDINATES: similar to AA sequence:RefSeq:WP_002801292.1
COORDINATES: protein motif:HMM:NF014548.2
COORDINATES: protein motif:HMM:NF016491.2
COORDINATES: similar to AA sequence:RefSeq:WP_002804396.1
COORDINATES: similar to AA sequence:RefSeq:WP_002790208.1
P-type conjugative transfer protein VirB9
COORDINATES: similar to AA sequence:RefSeq:WP_002826433.1
COORDINATES: similar to AA sequence:RefSeq:WP_002839584.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004276302.1
COORDINATES: similar to AA sequence:RefSeq:WP_002788519.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002822840.1
cag pathogenicity island Cag12 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006803316.1
TrbM/KikA/MpfK family conjugal transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_006803318.1
COORDINATES: similar to AA sequence:RefSeq:WP_002842888.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00621.2
COORDINATES: protein motif:HMM:NF023351.2
inverse autotransporter beta domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005867974.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF039512.1
COORDINATES: protein motif:HMM:NF033894.1
COORDINATES: similar to AA sequence:RefSeq:WP_006803292.1
COORDINATES: similar to AA sequence:RefSeq:WP_002804272.1
COORDINATES: similar to AA sequence:RefSeq:WP_002841954.1
COORDINATES: similar to AA sequence:RefSeq:WP_002883458.1
GO:0006260 - DNA replication [Evidence IEA]; GO:0006276 - plasmid maintenance [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012662283.1