Hepatitis GB virus A, complete genome.
type: Entry
definition: Hepatitis GB virus A, complete genome.
sequence version: NC_001837.1
sequence date: 2018-08-13
sequence: sequence
division: VRL
label: NC_001837.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA485481
keyword: RefSeq
source: Pegivirus platyrrhini
organism: Pegivirus platyrrhini
taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Flasuviricetes; Amarillovirales; Flaviviridae; Pegivirus.
reference: 1
references: 9292019
reference: 2
references: 8971037
reference: 3
reference: 4
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence was derived from U94421.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000353
sequence length: 9550
topology: linear
so has quality: SO_0000987
location: 1..9550
location: region:1-9550:1
RO_0002162: 3052610

NC_001837
type: RefSeq
SIO_000068: refseq

PRJNA485481
type: BioProject
SIO_000068: bioproject

1
title: The sequence and genomic organization of a GB virus A variant isolated from captive tamarins
author: Leary, T.P.
author: Desai, S.M.
author: Erker, J.C.
author: Mushahwar, I.K.
journal: J. Gen. Virol. 78 (Pt 9), 2307-2313 (1997)
pubmed: 9292019

9292019
type: PubMed
SIO_000068: pubmed

2
title: Species-specific variants of GB virus A in captive monkeys
author: Leary, T.P.
author: Desai, S.M.
author: Yamaguchi, J.
author: Chalmers, M.L.
author: Schlauder, G.G.
author: Dawson, G.J.
author: Mushahwar, I.K.
journal: J. Virol.
volume: 70
issue: 12
pages: 9028-9030
year: 1996
pubmed: 8971037

8971037
type: PubMed
SIO_000068: pubmed

3
title: Direct Submission
journal: Submitted (01-AUG-2000) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

4
title: Direct Submission
author: Leary, T.P.
author: Desai, S.M.
author: Erker, J.C.
author: Mushahwar, I.K.
journal: Submitted (18-MAR-1997) Dept. 90D, Bldg. L3, Abbott Laboratories, 1401 Sheridan Road, North Chicago, IL 60064, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9550:1
position: 9550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-9550:1:source
so part of: sequence
organism: Pegivirus platyrrhini
mol type: genomic RNA

3052610
type: Taxonomy
SIO_000068: taxonomy

HGvAgp1
type: Gene
subclass of: SO_0000704
RO_0002162: 3052610
locus tag: HGvAgp1
so part of: sequence
location: 532..9435
location: region:532-9435:1
so has part: feature:532-9435:1:exon
subclass of: SO_0000010

1403458
type: Gene
SIO_000068: ncbigene

position:532:1
position: 532
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9435:1
position: 9435
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:532-9435:1:exon

HGvAgp1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3052610
locus tag: HGvAgp1
note: The putative polyprotein processing products were predicted with variable level of confidence based on sequence similarity with those of Hepatitis C virus
codon start: 1
product: polyprotein precursor
translation: MELLLLLVLLAPAGAILFPSRHACRVGDHYYLSNCCSEDEVYFCFGDGCLVAYGCTVCTQSCWTLYRPGVATRPGSQPGELLGKFGGALGPVASAAYTAGVLGLGEPFSLAFCAGLLTSRVGRMPALNCSLRCNFDYSYPGISVDFDWAFTTLIHLPGKLWRGFTNASMLAVLVIIMLVLEQRLLMAFLLLLVVGEAQGGIFDNCHCAYWGGRPPPRLDINYRGNGTVVCECDFGKMHWAPKLCSGLLWRDGAREGTVWTLPRVCPREVLGTVSAVCQWGSAYWVWRFGDWVPLYDELPRSALCTFYAGTGRYPADVDVLNPSGPPCASCVVDQRPRKCGDCVRDCFETGGPGFEECGVGVRVTSLLTAVLVDGGVESKVSTPVGERPKYLGQHGQGTFYGAVKKLGVNMTVSQIGGYWHALQCPCDFTPGPLPERIPGIPVNACITGKAAHPFSAWAPGGFYAPVFTKCNWPTVPGVDVCNGFAFDFPGDHNGFIHVKKGRQQIFSGQRRSSPTWLLSDMVLAMLVMMKLAEARVVPLFCLAMWWYVNGALTASITIIHVNVTQVTHPSWGWTVPTVKPLPCPNSTTGLGDSVSNAACFAGSDLWLGVGGAWSALSGATSAVASWVGSAYRTLHNVGLGVRWLASVGSYLPTVEAALAPELVCAPVVGWGAQESWFVGFLAVCCVVAYLGVLGTARCCVLVAMHFARGALPLVMLVLAGVSRERHSVLGLEVCFNLEGTGWDWSDYWWCVAGVVSWALVTMGLLTHGGKEVKLRWYRTWCVFYQKVRLRLLDTPIGNRPRRPLCKLWLVAAWFWPDIAAEVCVFLILIFGFLDVVDFCLEVSLVSSPNLVRLAQMFDSLVMAGERLGATHLAERLRRRGVFLFEHAGHVTRPAAERLREWGFALEPVAVKPEDCAIVRDAARVLGCGQRVNGVPVVARRGDEVLIGCLSSRFDLPPGFVPTAPVVVHHQGKGFFGVVKTSMTGRDETDHCGNVVVLGTSTTRSMGTCVNGVMYATYHGTNGRTMAGPMGPVNARWWSTSDDVCVYPLPMGATCLEPCKCSPQGVWVVRNDGALCHGTLGKTVELDLPAELCDFRGSSGSPILCDEGHAVGMLVSVLHRGNRVTGIRYTKPWETLPREAQTKTEAPPVPGKTGYREAPLYLPTGSGKSTRIPAEYAKAGHKVLVLNPSIATVRAMGPYMEKLTGQHPSVYCGHDTTAYSRTTQSNLTYCTYGRFMANPRKYLRGHDVVICDECHSTDGVSVLGMGRARLLAKECRVRLLLFATATPPGAPMAAHDNITEEPLDTEGEITFYGHRLPVARYATGRHLLFCHSKVECERTCAALSALGVSAVTYYRGRETEIPAGDVCVCATDALSTGYSGNFDSVTDCGLMVEEVVEVTLDPTITISLRTVPAPAELRMQRRGRCGRGRTGHYYSALAAAAPAGTVRSGALWAAVEAGVTWYNLEPDLTGDILRAYDSCPYTAAITASVGEAITFFSGLVPMRNYPQVVWAKQKGHXWPLLVGVQRQMCEEAGCGPPADGPEWNGIKGKGPVPLLLRWGGQLPEHVAPHHWVDDLQARLGVXEGYTPCLAGPVLLVGLAMAGGALLAHWTGSIVVVTTWEVNGGGNPLLYQTRRGVPTSGSPVVVVPPCEGGERYPCDVKPVAEAVGILETECGWGPMAASYAYXKACEVGSQVGTKCDALWKAWTAGVLVPPAPALADNAPGLLATLDTMFTQTWEAIFTNGRSLLVGXTAAYGAKRNPPLGVAASFLLGMSAGRAVHVRLAAALLLGVGGTMLGQASTGLAMAGAYFAGGSITSSWLSIIITLLGGWEGAVNAASLTFDLLSGKAEAKDAWCIISCLASPGASVAGVALGVLLWSVKKGVGHDWVNRLLTVLPRSSVMPDDFFVKDEYVNRVSSVLRKMSLSRWILTLVDKREAEMETPASEVLWDLLDWCVRLGRYLLRKIKTTFPRLKIPLMGCSKGWAGPWEGNGHVEARCTCGCV…
SIO_010081: HGvAgp1
subclass of: SO_0000673
so part of: HGvAgp1
location: 532..9435
location: region:532-9435:1
so has part: feature:532-9435:1:exon

NP_045010.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:532-9435:1:exon

HGvAgp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 3052610
locus tag: HGvAgp1
product: putative E1 protein
inference: non-experimental evidence, no additional details recorded
SIO_010081: HGvAgp1
subclass of: SO_0000673
so part of: HGvAgp1
location: 532..1443
location: region:532-1443:1
so has part: feature:532-1443:1:exon

NP_803210.1
type: Protein
SIO_000068: ncbiprotein

position:1443:1
position: 1443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:532-1443:1:exon

HGvAgp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 3052610
locus tag: HGvAgp1
product: putative E2 protein
inference: non-experimental evidence, no additional details recorded
SIO_010081: HGvAgp1
subclass of: SO_0000673
so part of: HGvAgp1
location: 1444..2658
location: region:1444-2658:1
so has part: feature:1444-2658:1:exon

NP_803211.1
type: Protein
SIO_000068: ncbiprotein

position:1444:1
position: 1444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2658:1
position: 2658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1444-2658:1:exon

HGvAgp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 3052610
locus tag: HGvAgp1
product: putative protein p7-NS2
inference: non-experimental evidence, no additional details recorded
SIO_010081: HGvAgp1
subclass of: SO_0000673
so part of: HGvAgp1
location: 2659..3417
location: region:2659-3417:1
so has part: feature:2659-3417:1:exon

NP_803212.1
type: Protein
SIO_000068: ncbiprotein

position:2659:1
position: 2659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3417:1
position: 3417
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2659-3417:1:exon

HGvAgp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 3052610
locus tag: HGvAgp1
product: NS3 proteinase/ATPase/helicase
inference: non-experimental evidence, no additional details recorded
SIO_010081: HGvAgp1
subclass of: SO_0000673
so part of: HGvAgp1
location: 3418..5292
location: region:3418-5292:1
so has part: feature:3418-5292:1:exon

NP_803213.1
type: Protein
SIO_000068: ncbiprotein

position:3418:1
position: 3418
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5292:1
position: 5292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3418-5292:1:exon

HGvAgp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 3052610
locus tag: HGvAgp1
product: putative NS4A protein
inference: non-experimental evidence, no additional details recorded
note: HCV NS4A is a cofactor for NS3
SIO_010081: HGvAgp1
subclass of: SO_0000673
so part of: HGvAgp1
location: 5293..5490
location: region:5293-5490:1
so has part: feature:5293-5490:1:exon

NP_803214.1
type: Protein
SIO_000068: ncbiprotein

position:5293:1
position: 5293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5490:1
position: 5490
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5293-5490:1:exon

HGvAgp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 3052610
locus tag: HGvAgp1
product: putative NS4B protein
inference: non-experimental evidence, no additional details recorded
SIO_010081: HGvAgp1
subclass of: SO_0000673
so part of: HGvAgp1
location: 5491..6354
location: region:5491-6354:1
so has part: feature:5491-6354:1:exon

NP_803215.1
type: Protein
SIO_000068: ncbiprotein

position:5491:1
position: 5491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6354:1
position: 6354
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5491-6354:1:exon

HGvAgp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 3052610
locus tag: HGvAgp1
product: putative NS5A protein
inference: non-experimental evidence, no additional details recorded
SIO_010081: HGvAgp1
subclass of: SO_0000673
so part of: HGvAgp1
location: 6355..7749
location: region:6355-7749:1
so has part: feature:6355-7749:1:exon

NP_803216.1
type: Protein
SIO_000068: ncbiprotein

position:6355:1
position: 6355
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7749:1
position: 7749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6355-7749:1:exon

HGvAgp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 3052610
locus tag: HGvAgp1
product: putative NS5B RNA-dependent RNA polymerase
inference: non-experimental evidence, no additional details recorded
SIO_010081: HGvAgp1
subclass of: SO_0000673
so part of: HGvAgp1
location: 7750..9432
location: region:7750-9432:1
so has part: feature:7750-9432:1:exon

NP_803217.1
type: Protein
SIO_000068: ncbiprotein

position:7750:1
position: 7750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9432:1
position: 9432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7750-9432:1:exon