Bos indicus x Bos taurus breed Angus x Brahman F1 hybrid chromosome 20, Bos_hybrid_MaternalHap_v2.0, whole genome shotgun sequence.
type: Entry
definition: Bos indicus x Bos taurus breed Angus x Brahman F1 hybrid chromosome 20, Bos_hybrid_MaternalHap_v2.0, whole genome shotgun sequence.
sequence version: NC_040095.1
sequence date: 2018-12-25
sequence: sequence
division: CON
label: NC_040095.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA508959
dblink: SAMN08473802
keyword: WGS
keyword: RefSeq
source: Bos indicus x Bos taurus (hybrid cattle)
organism: Bos indicus x Bos taurus
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos; Bos hybrids.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM011823.1.\nAssembly name: Bos_hybrid_MaternalHap_v2.0\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the University of Adelaide on\n2018/11/30. The original whole-genome shotgun project has the\naccession PUFS00000000.2.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: University of Adelaide\nAssembly Method :: TrioCanu v. 1.6\nAssembly Name :: Bos_hybrid_MaternalHap_v2.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 136.0x\nSequencing Technology :: PacBio Sequel; PacBio RSII; Illumina\n NextSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Bos indicus x Bos taurus Annotation\n Release 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.1\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 71581568
topology: linear
so has quality: SO_0000987
location: 1..71581568
location: region:1-71581568:1
RO_0002162: 30522

NC_040095
type: RefSeq
SIO_000068: refseq

PRJNA508959
type: BioProject
SIO_000068: bioproject

SAMN08473802
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:71581568:1
position: 71581568
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-71581568:1:source
so part of: sequence
organism: Bos indicus x Bos taurus
mol type: genomic DNA
chromosome: 20
sex: male
tissue type: lung
dev stage: fetus
collected by: Stefan Hiendleder
breed: Angus x Brahman F1 hybrid

30522
type: Taxonomy
SIO_000068: taxonomy

LOC113878828
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: LOC113878828
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(666..1777)
location: region:666-1777:-1
so has part: feature:666-1777:-1:exon

113878828
type: Gene
SIO_000068: ncbigene

position:666:-1
position: 666
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1777:-1
position: 1777
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:666-1777:-1:exon

LOC113878828
type: Exon
subclass of: SO_0000147
RO_0002162: 30522
gene: LOC113878828
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC113878828
subclass of: SO_0000673
so part of: LOC113878828
location: complement(666..1777)
location: region:666-1777:-1
so has part: feature:666-1777:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:666-1777:-1:exon

LOC113878829
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: LOC113878829
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(10343..11249)
location: region:10343-11249:-1
so has part: feature:10343-11249:-1:exon

113878829
type: Gene
SIO_000068: ncbigene

position:10343:-1
position: 10343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11249:-1
position: 11249
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10343-11249:-1:exon

LOC113878829
type: Exon
subclass of: SO_0000147
RO_0002162: 30522
gene: LOC113878829
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
pseudo: true
SIO_010081: LOC113878829
subclass of: SO_0000673
so part of: LOC113878829
location: complement(10343..11249)
location: region:10343-11249:-1
so has part: feature:10343-11249:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10343-11249:-1:exon

LOC113878830
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: LOC113878830
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 26587..28428
location: region:26587-28428:1
so has part: feature:26587-28428:1:exon

113878830
type: Gene
SIO_000068: ncbigene

position:26587:1
position: 26587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28428:1
position: 28428
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26587-28428:1:exon

LOC113878830
type: Exon
subclass of: SO_0000147
RO_0002162: 30522
gene: LOC113878830
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins
pseudo: true
SIO_010081: LOC113878830
subclass of: SO_0000673
so part of: LOC113878830
location: 26587..26745
location: region:26587-26745:1
so has part: feature:26587-26745:1:exon

position:26745:1
position: 26745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26587-26745:1:exon

LOC113878830
type: Exon
subclass of: SO_0000147
RO_0002162: 30522
gene: LOC113878830
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins
pseudo: true
SIO_010081: LOC113878830
subclass of: SO_0000673
so part of: LOC113878830
location: 27456..28428
location: region:27456-28428:1
so has part: feature:27456-28428:1:exon

position:27456:1
position: 27456
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27456-28428:1:exon

LOC113879230
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: LOC113879230
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 37555..38822
location: region:37555-38822:1
so has part: feature:37555-38822:1:exon

113879230
type: Gene
SIO_000068: ncbigene

position:37555:1
position: 37555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38822:1
position: 38822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:37555-38822:1:exon

LOC113879230
type: Exon
subclass of: SO_0000147
RO_0002162: 30522
gene: LOC113879230
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 46% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC113879230
subclass of: SO_0000673
so part of: LOC113879230
location: 37555..38319
location: region:37555-38319:1
so has part: feature:37555-38319:1:exon

position:38319:1
position: 38319
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:37555-38319:1:exon

LOC113879230
type: Exon
subclass of: SO_0000147
RO_0002162: 30522
gene: LOC113879230
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 46% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC113879230
subclass of: SO_0000673
so part of: LOC113879230
location: 38615..38822
location: region:38615-38822:1
so has part: feature:38615-38822:1:exon

position:38615:1
position: 38615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38615-38822:1:exon

LOC113878863
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: LOC113878863
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 51061..52007
location: region:51061-52007:1
so has part: feature:51061-52007:1:exon

113878863
type: Gene
SIO_000068: ncbigene

position:51061:1
position: 51061
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:52007:1
position: 52007
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:51061-52007:1:exon

LOC113878863
type: Exon
subclass of: SO_0000147
RO_0002162: 30522
gene: LOC113878863
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
pseudo: true
SIO_010081: LOC113878863
subclass of: SO_0000673
so part of: LOC113878863
location: 51061..52007
location: region:51061-52007:1
so has part: feature:51061-52007:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:51061-52007:1:exon

LOC113878831
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: LOC113878831
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 59819..64513
location: region:59819-64513:1
so has part: feature:59819-64513:1:exon

113878831
type: Gene
SIO_000068: ncbigene

position:59819:1
position: 59819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:64513:1
position: 64513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59819-64513:1:exon

LOC113878831
type: Exon
subclass of: SO_0000147
RO_0002162: 30522
gene: LOC113878831
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
pseudo: true
SIO_010081: LOC113878831
subclass of: SO_0000673
so part of: LOC113878831
location: 59819..59847
location: region:59819-59847:1
so has part: feature:59819-59847:1:exon

position:59847:1
position: 59847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59819-59847:1:exon

LOC113878831
type: Exon
subclass of: SO_0000147
RO_0002162: 30522
gene: LOC113878831
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
pseudo: true
SIO_010081: LOC113878831
subclass of: SO_0000673
so part of: LOC113878831
location: 64001..64513
location: region:64001-64513:1
so has part: feature:64001-64513:1:exon

position:64001:1
position: 64001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:64001-64513:1:exon

LOC113878832
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: LOC113878832
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 79054..80182
location: region:79054-80182:1
so has part: feature:79054-80182:1:exon

113878832
type: Gene
SIO_000068: ncbigene

position:79054:1
position: 79054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:80182:1
position: 80182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:79054-80182:1:exon

LOC113878832
type: Exon
subclass of: SO_0000147
RO_0002162: 30522
gene: LOC113878832
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
pseudo: true
SIO_010081: LOC113878832
subclass of: SO_0000673
so part of: LOC113878832
location: 79054..79150
location: region:79054-79150:1
so has part: feature:79054-79150:1:exon

position:79150:1
position: 79150
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:79054-79150:1:exon

LOC113878832
type: Exon
subclass of: SO_0000147
RO_0002162: 30522
gene: LOC113878832
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
pseudo: true
SIO_010081: LOC113878832
subclass of: SO_0000673
so part of: LOC113878832
location: 79453..80182
location: region:79453-80182:1
so has part: feature:79453-80182:1:exon

position:79453:1
position: 79453
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:79453-80182:1:exon

LOC113878833
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: LOC113878833
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 82303..87118
location: region:82303-87118:1
so has part: feature:82303-87118:1:exon

113878833
type: Gene
SIO_000068: ncbigene

position:82303:1
position: 82303
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:87118:1
position: 87118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:82303-87118:1:exon

LOC113878833
type: Exon
subclass of: SO_0000147
RO_0002162: 30522
gene: LOC113878833
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 54% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC113878833
subclass of: SO_0000673
so part of: LOC113878833
location: 82303..82435
location: region:82303-82435:1
so has part: feature:82303-82435:1:exon

position:82435:1
position: 82435
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:82303-82435:1:exon

LOC113878833
type: Exon
subclass of: SO_0000147
RO_0002162: 30522
gene: LOC113878833
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 54% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC113878833
subclass of: SO_0000673
so part of: LOC113878833
location: 86130..87118
location: region:86130-87118:1
so has part: feature:86130-87118:1:exon

position:86130:1
position: 86130
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:86130-87118:1:exon

LOC113878834
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: LOC113878834
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(93829..99917)
location: region:93829-99917:-1
so has part: feature:93829-99917:-1:exon

113878834
type: Gene
SIO_000068: ncbigene

position:93829:-1
position: 93829
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:99917:-1
position: 99917
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:93829-99917:-1:exon

LOC113878834
type: Exon
subclass of: SO_0000147
RO_0002162: 30522
gene: LOC113878834
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
pseudo: true
SIO_010081: LOC113878834
subclass of: SO_0000673
so part of: LOC113878834
location: complement(93829..94198)
location: region:93829-94198:-1
so has part: feature:93829-94198:-1:exon

position:94198:-1
position: 94198
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:93829-94198:-1:exon

LOC113878834
type: Exon
subclass of: SO_0000147
RO_0002162: 30522
gene: LOC113878834
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
pseudo: true
SIO_010081: LOC113878834
subclass of: SO_0000673
so part of: LOC113878834
location: complement(98736..99685)
location: region:98736-99685:-1
so has part: feature:98736-99685:-1:exon

position:98736:-1
position: 98736
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:99685:-1
position: 99685
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:98736-99685:-1:exon

LOC113878834
type: Exon
subclass of: SO_0000147
RO_0002162: 30522
gene: LOC113878834
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
pseudo: true
SIO_010081: LOC113878834
subclass of: SO_0000673
so part of: LOC113878834
location: complement(99864..99917)
location: region:99864-99917:-1
so has part: feature:99864-99917:-1:exon

position:99864:-1
position: 99864
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:99864-99917:-1:exon

LOC113878962
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: LOC113878962
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(103966..104903)
location: region:103966-104903:-1
so has part: feature:103966-104903:-1:exon

113878962
type: Gene
SIO_000068: ncbigene

position:103966:-1
position: 103966
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:104903:-1
position: 104903
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:103966-104903:-1:exon

LOC113878962
type: Exon
subclass of: SO_0000147
RO_0002162: 30522
gene: LOC113878962
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
pseudo: true
SIO_010081: LOC113878962
subclass of: SO_0000673
so part of: LOC113878962
location: complement(103966..104903)
location: region:103966-104903:-1
so has part: feature:103966-104903:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:103966-104903:-1:exon

SPZ1
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: SPZ1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 162392..164099
location: region:162392-164099:1
so has part: feature:162392-164099:1:exon
subclass of: SO_0000010

113879258
type: Gene
SIO_000068: ncbigene

position:162392:1
position: 162392
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:164099:1
position: 164099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:162392-164099:1:exon

SPZ1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: SPZ1
product: spermatogenic leucine zipper 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 17 ESTs, 2 Proteins
transcript id: XM_027520578.1
SIO_010081: SPZ1
subclass of: SO_0000673
so part of: SPZ1
location: 162392..164099
location: region:162392-164099:1
so has part: feature:162392-164099:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:162392-164099:1:exon

SPZ1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: SPZ1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: spermatogenic leucine zipper protein 1
translation: MEVPTLSKTRKPPDLNEESLDLGIMIALFEIGSIPPVSCSSLPSLKSSDHEATEQRIAKKFESLLKEIKDIVKHVTSYEQKVTETKEPFKETNMFEVSELREKIIELDEINKELVKKLLASLDLGKKENAKKQEMRLDNQNSEDTVQDCSGDLVNCSKGQKALPETQLSKEKAKHGFPHIQEENIRLRNNMERLLQEAEHWSVEHTELSKLIKSYQKSQNDIKTLKNNGTHSPTQTNNESAKQELEEQVKRLKEDTYSLHLIATLLENECQILEQRVELLDELHHQKEEPLQGEPMQINHEQSDKEQKLPEAEKVKIHEKNMPEVEGTFHKRDQFFTSLDICHNKKAHNNQFNTRIAKRALVVKRPASSLS
SIO_010081: SPZ1
subclass of: SO_0000673
so part of: SPZ1
location: 162647..163762
location: region:162647-163762:1
so has part: feature:162647-163762:1:exon

XP_027376379.1
type: Protein
SIO_000068: ncbiprotein

position:162647:1
position: 162647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:163762:1
position: 163762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:162647-163762:1:exon

PANK3
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: PANK3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(185738..213769)
location: region:185738-213769:-1
so has part: feature:185738-213769:-1:exon
subclass of: SO_0000010

113879274
type: Gene
SIO_000068: ncbigene

position:185738:-1
position: 185738
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:213769:-1
position: 213769
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:185738-213769:-1:exon

PANK3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: PANK3
product: pantothenate kinase 3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 62 ESTs, 5 long SRA reads, 13 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments, including 202 samples with support for all annotated introns
transcript id: XM_027520611.1
SIO_010081: PANK3
subclass of: SO_0000673
so part of: PANK3
location: complement(join(185738..193091,194467..194592,199278..199401,200353..200529,202503..202756,206914..207266,213420..213769))
location: region:185738-213769:-1
so has part: feature:213420-213769:-1:exon
so has part: feature:206914-207266:-1:exon
so has part: feature:202503-202756:-1:exon
so has part: feature:200353-200529:-1:exon
so has part: feature:199278-199401:-1:exon
so has part: feature:194467-194592:-1:exon
so has part: feature:185738-193091:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:213420-213769:-1:exon

position:213420:-1
position: 213420
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:206914-207266:-1:exon

position:206914:-1
position: 206914
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:207266:-1
position: 207266
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:202503-202756:-1:exon

position:202503:-1
position: 202503
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:202756:-1
position: 202756
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:200353-200529:-1:exon

position:200353:-1
position: 200353
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:200529:-1
position: 200529
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:199278-199401:-1:exon

position:199278:-1
position: 199278
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:199401:-1
position: 199401
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:194467-194592:-1:exon

position:194467:-1
position: 194467
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:194592:-1
position: 194592
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:185738-193091:-1:exon

position:193091:-1
position: 193091
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PANK3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: PANK3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pantothenate kinase 3
translation: MKIKDAKKPSFPWFGMDIGGTLVKLSYFEPIDITAEEEQEEVESLKSIRKYLTSNVAYGSTGIRDVHLELKDLTLFGRRGNLHFIRFPTQDLPTFIQMGRDKNFSTLHTVLCATGGGAYKFEKDFRTIGNLHLHKLDELDCLVKGLLYIDSVSFNGQAECYYFANASEPERCQKMPFNLDDPYPLLVVNIGSGVSILAVHSKDNYKRVTGTSLGGGTFLGLCSLLTGCESFEEALEMASKGDSTQADKLVRDIYGGDYERFGLPGWAVASSFGNMIYKEKRESVSKEDLARATLVTITNNIGSIARMCAVNEKINRVVFVGNFLRVNTLSMKLLAYALDYWSKGQLKALFLEHEGYFGAVGALLGLPNFS
SIO_010081: PANK3
subclass of: SO_0000673
so part of: PANK3
location: complement(join(193041..193091,194467..194592,199278..199401,200353..200529,202503..202756,206914..207266,213420..213447))
location: region:193041-213447:-1
so has part: feature:213420-213447:-1:exon
so has part: feature:206914-207266:-1:exon
so has part: feature:202503-202756:-1:exon
so has part: feature:200353-200529:-1:exon
so has part: feature:199278-199401:-1:exon
so has part: feature:194467-194592:-1:exon
so has part: feature:193041-193091:-1:exon

XP_027376412.1
type: Protein
SIO_000068: ncbiprotein

position:193041:-1
position: 193041
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:213447:-1
position: 213447
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:213420-213447:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:206914-207266:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:202503-202756:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:200353-200529:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:199278-199401:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:194467-194592:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:193041-193091:-1:exon

SLIT3
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: SLIT3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(328028..1046233)
location: region:328028-1046233:-1
so has part: feature:328028-1046233:-1:exon
subclass of: SO_0000010

113879125
type: Gene
SIO_000068: ncbigene

position:328028:-1
position: 328028
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1046233:-1
position: 1046233
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:328028-1046233:-1:exon

SLIT3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: SLIT3
product: slit guidance ligand 3, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 41 ESTs, 3 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 130 samples with support for all annotated introns
transcript id: XM_027520392.1
SIO_010081: SLIT3
subclass of: SO_0000673
so part of: SLIT3
location: complement(join(328028..332705,335337..335545,336789..337074,337705..337859,353228..353358,355340..355580,357077..357214,364246..364339,367062..367201,371043..371140,378730..378854,380858..381021,383375..383446,392993..393064,393865..393936,395828..395896,419104..419236,420395..420558,423646..423789,424701..424844,433261..433335,434529..434679,446100..446263,447663..447806,463287..463358,466978..467049,473088..473159,486296..486437,496146..496309,503611..503682,528296..528367,572716..572787,914350..914421,981478..981549,990829..990900,1045821..1046233))
location: region:328028-1046233:-1
so has part: feature:1045821-1046233:-1:exon
so has part: feature:990829-990900:-1:exon
so has part: feature:981478-981549:-1:exon
so has part: feature:914350-914421:-1:exon
so has part: feature:572716-572787:-1:exon
so has part: feature:528296-528367:-1:exon
so has part: feature:503611-503682:-1:exon
so has part: feature:496146-496309:-1:exon
so has part: feature:486296-486437:-1:exon
so has part: feature:473088-473159:-1:exon
so has part: feature:466978-467049:-1:exon
so has part: feature:463287-463358:-1:exon
so has part: feature:447663-447806:-1:exon
so has part: feature:446100-446263:-1:exon
so has part: feature:434529-434679:-1:exon
so has part: feature:433261-433335:-1:exon
so has part: feature:424701-424844:-1:exon
so has part: feature:423646-423789:-1:exon
so has part: feature:420395-420558:-1:exon
so has part: feature:419104-419236:-1:exon
so has part: feature:395828-395896:-1:exon
so has part: feature:393865-393936:-1:exon
so has part: feature:392993-393064:-1:exon
so has part: feature:383375-383446:-1:exon
so has part: feature:380858-381021:-1:exon
so has part: feature:378730-378854:-1:exon
so has part: feature:371043-371140:-1:exon
so has part: feature:367062-367201:-1:exon
so has part: feature:364246-364339:-1:exon
so has part: feature:357077-357214:-1:exon
so has part: feature:355340-355580:-1:exon
so has part: feature:353228-353358:-1:exon
so has part: feature:337705-337859:-1:exon
so has part: feature:336789-337074:-1:exon
so has part: feature:335337-335545:-1:exon
so has part: feature:328028-332705:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1045821-1046233:-1:exon

position:1045821:-1
position: 1045821
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:990829-990900:-1:exon

position:990829:-1
position: 990829
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:990900:-1
position: 990900
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:981478-981549:-1:exon

position:981478:-1
position: 981478
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:981549:-1
position: 981549
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:914350-914421:-1:exon

position:914350:-1
position: 914350
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:914421:-1
position: 914421
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:572716-572787:-1:exon

position:572716:-1
position: 572716
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:572787:-1
position: 572787
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:528296-528367:-1:exon

position:528296:-1
position: 528296
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:528367:-1
position: 528367
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:503611-503682:-1:exon

position:503611:-1
position: 503611
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:503682:-1
position: 503682
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:496146-496309:-1:exon

position:496146:-1
position: 496146
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:496309:-1
position: 496309
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:486296-486437:-1:exon

position:486296:-1
position: 486296
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:486437:-1
position: 486437
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:473088-473159:-1:exon

position:473088:-1
position: 473088
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:473159:-1
position: 473159
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:466978-467049:-1:exon

position:466978:-1
position: 466978
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:467049:-1
position: 467049
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:463287-463358:-1:exon

position:463287:-1
position: 463287
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:463358:-1
position: 463358
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:447663-447806:-1:exon

position:447663:-1
position: 447663
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:447806:-1
position: 447806
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:446100-446263:-1:exon

position:446100:-1
position: 446100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:446263:-1
position: 446263
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:434529-434679:-1:exon

position:434529:-1
position: 434529
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:434679:-1
position: 434679
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:433261-433335:-1:exon

position:433261:-1
position: 433261
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:433335:-1
position: 433335
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:424701-424844:-1:exon

position:424701:-1
position: 424701
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:424844:-1
position: 424844
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:423646-423789:-1:exon

position:423646:-1
position: 423646
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:423789:-1
position: 423789
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:420395-420558:-1:exon

position:420395:-1
position: 420395
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:420558:-1
position: 420558
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:419104-419236:-1:exon

position:419104:-1
position: 419104
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:419236:-1
position: 419236
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:395828-395896:-1:exon

position:395828:-1
position: 395828
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:395896:-1
position: 395896
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:393865-393936:-1:exon

position:393865:-1
position: 393865
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:393936:-1
position: 393936
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:392993-393064:-1:exon

position:392993:-1
position: 392993
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:393064:-1
position: 393064
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:383375-383446:-1:exon

position:383375:-1
position: 383375
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:383446:-1
position: 383446
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:380858-381021:-1:exon

position:380858:-1
position: 380858
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:381021:-1
position: 381021
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:378730-378854:-1:exon

position:378730:-1
position: 378730
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:378854:-1
position: 378854
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:371043-371140:-1:exon

position:371043:-1
position: 371043
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:371140:-1
position: 371140
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:367062-367201:-1:exon

position:367062:-1
position: 367062
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:367201:-1
position: 367201
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:364246-364339:-1:exon

position:364246:-1
position: 364246
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:364339:-1
position: 364339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 30
SIO_000628: feature:357077-357214:-1:exon

position:357077:-1
position: 357077
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:357214:-1
position: 357214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 31
SIO_000628: feature:355340-355580:-1:exon

position:355340:-1
position: 355340
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:355580:-1
position: 355580
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 32
SIO_000628: feature:353228-353358:-1:exon

position:353228:-1
position: 353228
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:353358:-1
position: 353358
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 33
SIO_000628: feature:337705-337859:-1:exon

position:337705:-1
position: 337705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:337859:-1
position: 337859
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 34
SIO_000628: feature:336789-337074:-1:exon

position:336789:-1
position: 336789
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:337074:-1
position: 337074
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 35
SIO_000628: feature:335337-335545:-1:exon

position:335337:-1
position: 335337
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:335545:-1
position: 335545
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 36
SIO_000628: feature:328028-332705:-1:exon

position:332705:-1
position: 332705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SLIT3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: SLIT3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: slit homolog 3 protein isoform X1
translation: MAPGRTGAGAAVRARLMLALALASVLSGPPAAACPTKCTCSAASVDCHGLGLRAVPRGIPRNAERLDLDRNNITRITKTDFAGLKNLRVLHLEDNQVSVIERGAFQDLKQLERLRLNKNKLQVLPELLFQSNLKLTRLDLSENQILGIPRKAFRGIADVKNLQLDNNHISCIEDGAFRALRDLEILTLNNNNISRILVTSFNHMPKIRTLRLHSNHLYCDCHLAWLSDWLRQRRTVGPFTLCMAPVHLRGFNVADVQKKEYVCPGPHSEPPACNANSISCPSACTCSNNIVDCRGKGLTEIPANLPEGIVEIRLEQNSIKSIPAGAFTQYKKLKRIDISKNQISDIAPDAFQGLKSLTSLVLYGNKITEIPKGLFDGLVSLQLLLLNANKINCLRVNTFQDLQSLSLLSLYDNKLQTISKGLFAPLQAIQTLHLAQNPFVCDCHLRWLADYLQDNPIETSGARCSSPRRLANKRISQIKSKKFRCSGSEDYRSRFSSECFMDLVCPDRCRCEGTIVDCSNQKLARIPSHLPEYVTDLRLNDNEISVLEATGIFKKLPNLRKINLSNNRIKEVKEGAFDGAASVQELVLTGNQLETAHGRAFRGLSGLKTLMLRSNLISCVSNDTFAGLSSVRLLSLYDNRITTITPGAFTTLVSLSTINLLSNPFNCNCHLAWLGKWLRKRRIVSGNPRCQKPFFLKEIPIQDVAIQDFTCDGNDESSCQLGPRCPEQCTCVETVVRCSNRGLRALPKGIPKDVTELYLEGNHLTAVPKELSSFRHLTLIDLSNNSIGMLTNYTFSNMSHLSTLILSYNRLRCIPVHSFNGLRSLRVLTLHGNDISSVPEGSFNDLTSLSHLALGTNPLHCDCSLRWLSEWVKAGYKEPGIARCSSPEPMADRLLLTTPTHRFQCKGPVDIGIVAKCDPCLSSPCKNNGTCSQDPVEGHRCACPHGYKGRDCTVPMNTCIQNPCLHGGTCHLSETHKGGFSCSCPLGFEGQRCEINPDDCEDNDCENNATCVDGVNNYVCVCPPNYTGELCDEVIDHCVPGMNLCQHEAKCISLDRGFRCECPPGYSGKLCEVDDDDCAAHRCRHGAQCVDAVNGYTCICPQGFSGLHCEHPPPMVLLQTSPCDQYECQNGAQCIVVQQEPTCRCPPGFAGPRCEKLITVNFVGKDSYVELASAKVRPQANISLQVATDKDNGILLYKGDNDPLALELYQGHVRLVYDSLSSPPTTVYSVETVNDGQFHSVELVMLNQTLNLVVDKGAPKSLGKLQKQPAVSINSPLYLGGIPTSTGLSALRQGMDRPLGGFHGCIHEVRINNELQDFKALPPQALGVSPGCKSCSVCRHGLCRAVEKDSVVCECHPGWTGPLCDQEARDPCLGHSCIQGKCVASGTSYVCRCTEGYGGALCDQKNDSNSACSAFKCHQGQCHVSDRGEPYCLCRPGFSGEHCEQETPCLGEVVREVIRRQKGYVSCATASKIPVMECRGGCGPQCCQPTRSKRRKYVFQCTDGSSFVEELERHLECGCRPCS
SIO_010081: SLIT3
subclass of: SO_0000673
so part of: SLIT3
location: complement(join(332470..332705,335337..335545,336789..337074,337705..337859,353228..353358,355340..355580,357077..357214,364246..364339,367062..367201,371043..371140,378730..378854,380858..381021,383375..383446,392993..393064,393865..393936,395828..395896,419104..419236,420395..420558,423646..423789,424701..424844,433261..433335,434529..434679,446100..446263,447663..447806,463287..463358,466978..467049,473088..473159,486296..486437,496146..496309,503611..503682,528296..528367,572716..572787,914350..914421,981478..981549,990829..990900,1045821..1046017))
location: region:332470-1046017:-1
so has part: feature:1045821-1046017:-1:exon
so has part: feature:990829-990900:-1:exon
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so has part: feature:419104-419236:-1:exon
so has part: feature:395828-395896:-1:exon
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so has part: feature:392993-393064:-1:exon
so has part: feature:383375-383446:-1:exon
so has part: feature:380858-381021:-1:exon
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so has part: feature:371043-371140:-1:exon
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so has part: feature:337705-337859:-1:exon
so has part: feature:336789-337074:-1:exon
so has part: feature:335337-335545:-1:exon
so has part: feature:332470-332705:-1:exon

XP_027376193.1
type: Protein
SIO_000068: ncbiprotein

position:332470:-1
position: 332470
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1046017:-1
position: 1046017
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1045821-1046017:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:990829-990900:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:981478-981549:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:914350-914421:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:572716-572787:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:528296-528367:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:503611-503682:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:496146-496309:-1:exon

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SIO_000300: 9
SIO_000628: feature:486296-486437:-1:exon

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SIO_000300: 10
SIO_000628: feature:473088-473159:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:466978-467049:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:463287-463358:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:447663-447806:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:446100-446263:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:434529-434679:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:433261-433335:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:424701-424844:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:423646-423789:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:420395-420558:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:419104-419236:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:395828-395896:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:393865-393936:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:392993-393064:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:383375-383446:-1:exon

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SIO_000300: 25
SIO_000628: feature:380858-381021:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:378730-378854:-1:exon

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SIO_000300: 27
SIO_000628: feature:371043-371140:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:367062-367201:-1:exon

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SIO_000300: 29
SIO_000628: feature:364246-364339:-1:exon

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SIO_000300: 30
SIO_000628: feature:357077-357214:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:355340-355580:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:353228-353358:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:337705-337859:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:336789-337074:-1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:335337-335545:-1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:332470-332705:-1:exon

SLIT3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: SLIT3
product: slit guidance ligand 3, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 44 samples with support for all annotated introns
transcript id: XM_027520393.1
SIO_010081: SLIT3
subclass of: SO_0000673
so part of: SLIT3
location: complement(join(332619..332705,334981..335054,335337..335545,336789..337074,337705..337859,353228..353358,355340..355580,357077..357214,364246..364339,367062..367201,371043..371140,378730..378854,380858..381021,383375..383446,392993..393064,393865..393936,395828..395896,419104..419236,420395..420558,423646..423789,424701..424844,433261..433335,434529..434679,446100..446263,447663..447806,463287..463358,466978..467049,473088..473159,486296..486437,496146..496309,503611..503682,528296..528367,572716..572787,914350..914421,981478..981549,990829..990900,1045821..1046127))
location: region:332619-1046127:-1
so has part: feature:1045821-1046127:-1:exon
so has part: feature:990829-990900:-1:exon
so has part: feature:981478-981549:-1:exon
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so has part: feature:380858-381021:-1:exon
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so has part: feature:371043-371140:-1:exon
so has part: feature:367062-367201:-1:exon
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so has part: feature:335337-335545:-1:exon
so has part: feature:334981-335054:-1:exon
so has part: feature:332619-332705:-1:exon

position:332619:-1
position: 332619
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1046127:-1
position: 1046127
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1045821-1046127:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:990829-990900:-1:exon

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SIO_000300: 3
SIO_000628: feature:981478-981549:-1:exon

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SIO_000300: 4
SIO_000628: feature:914350-914421:-1:exon

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SIO_000300: 5
SIO_000628: feature:572716-572787:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:528296-528367:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:503611-503682:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:496146-496309:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:486296-486437:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:473088-473159:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:466978-467049:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:463287-463358:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:447663-447806:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:446100-446263:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:434529-434679:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:433261-433335:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:424701-424844:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:423646-423789:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:420395-420558:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:419104-419236:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:395828-395896:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:393865-393936:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:392993-393064:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:383375-383446:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:380858-381021:-1:exon

urn:…
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SIO_000628: feature:378730-378854:-1:exon

urn:…
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SIO_000628: feature:371043-371140:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:367062-367201:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:364246-364339:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:357077-357214:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:355340-355580:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:353228-353358:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:337705-337859:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:336789-337074:-1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:335337-335545:-1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:334981-335054:-1:exon

position:334981:-1
position: 334981
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:335054:-1
position: 335054
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 37
SIO_000628: feature:332619-332705:-1:exon

SLIT3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: SLIT3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: slit homolog 3 protein isoform X2
translation: MAPGRTGAGAAVRARLMLALALASVLSGPPAAACPTKCTCSAASVDCHGLGLRAVPRGIPRNAERLDLDRNNITRITKTDFAGLKNLRVLHLEDNQVSVIERGAFQDLKQLERLRLNKNKLQVLPELLFQSNLKLTRLDLSENQILGIPRKAFRGIADVKNLQLDNNHISCIEDGAFRALRDLEILTLNNNNISRILVTSFNHMPKIRTLRLHSNHLYCDCHLAWLSDWLRQRRTVGPFTLCMAPVHLRGFNVADVQKKEYVCPGPHSEPPACNANSISCPSACTCSNNIVDCRGKGLTEIPANLPEGIVEIRLEQNSIKSIPAGAFTQYKKLKRIDISKNQISDIAPDAFQGLKSLTSLVLYGNKITEIPKGLFDGLVSLQLLLLNANKINCLRVNTFQDLQSLSLLSLYDNKLQTISKGLFAPLQAIQTLHLAQNPFVCDCHLRWLADYLQDNPIETSGARCSSPRRLANKRISQIKSKKFRCSGSEDYRSRFSSECFMDLVCPDRCRCEGTIVDCSNQKLARIPSHLPEYVTDLRLNDNEISVLEATGIFKKLPNLRKINLSNNRIKEVKEGAFDGAASVQELVLTGNQLETAHGRAFRGLSGLKTLMLRSNLISCVSNDTFAGLSSVRLLSLYDNRITTITPGAFTTLVSLSTINLLSNPFNCNCHLAWLGKWLRKRRIVSGNPRCQKPFFLKEIPIQDVAIQDFTCDGNDESSCQLGPRCPEQCTCVETVVRCSNRGLRALPKGIPKDVTELYLEGNHLTAVPKELSSFRHLTLIDLSNNSIGMLTNYTFSNMSHLSTLILSYNRLRCIPVHSFNGLRSLRVLTLHGNDISSVPEGSFNDLTSLSHLALGTNPLHCDCSLRWLSEWVKAGYKEPGIARCSSPEPMADRLLLTTPTHRFQCKGPVDIGIVAKCDPCLSSPCKNNGTCSQDPVEGHRCACPHGYKGRDCTVPMNTCIQNPCLHGGTCHLSETHKGGFSCSCPLGFEGQRCEINPDDCEDNDCENNATCVDGVNNYVCVCPPNYTGELCDEVIDHCVPGMNLCQHEAKCISLDRGFRCECPPGYSGKLCEVDDDDCAAHRCRHGAQCVDAVNGYTCICPQGFSGLHCEHPPPMVLLQTSPCDQYECQNGAQCIVVQQEPTCRCPPGFAGPRCEKLITVNFVGKDSYVELASAKVRPQANISLQVATDKDNGILLYKGDNDPLALELYQGHVRLVYDSLSSPPTTVYSVETVNDGQFHSVELVMLNQTLNLVVDKGAPKSLGKLQKQPAVSINSPLYLGGIPTSTGLSALRQGMDRPLGGFHGCIHEVRINNELQDFKALPPQALGVSPGCKSCSVCRHGLCRAVEKDSVVCECHPGWTGPLCDQEARDPCLGHSCIQGKCVASGTSYVCRCTEGYGGALCDQKNDSNSACSAFKCHQGQCHVSDRGEPYCLCRPGFSGEHCEQGQRFRNSLATLRDPN
SIO_010081: SLIT3
subclass of: SO_0000673
so part of: SLIT3
location: complement(join(335008..335054,335337..335545,336789..337074,337705..337859,353228..353358,355340..355580,357077..357214,364246..364339,367062..367201,371043..371140,378730..378854,380858..381021,383375..383446,392993..393064,393865..393936,395828..395896,419104..419236,420395..420558,423646..423789,424701..424844,433261..433335,434529..434679,446100..446263,447663..447806,463287..463358,466978..467049,473088..473159,486296..486437,496146..496309,503611..503682,528296..528367,572716..572787,914350..914421,981478..981549,990829..990900,1045821..1046017))
location: region:335008-1046017:-1
so has part: feature:1045821-1046017:-1:exon
so has part: feature:990829-990900:-1:exon
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so has part: feature:466978-467049:-1:exon
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so has part: feature:423646-423789:-1:exon
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so has part: feature:419104-419236:-1:exon
so has part: feature:395828-395896:-1:exon
so has part: feature:393865-393936:-1:exon
so has part: feature:392993-393064:-1:exon
so has part: feature:383375-383446:-1:exon
so has part: feature:380858-381021:-1:exon
so has part: feature:378730-378854:-1:exon
so has part: feature:371043-371140:-1:exon
so has part: feature:367062-367201:-1:exon
so has part: feature:364246-364339:-1:exon
so has part: feature:357077-357214:-1:exon
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so has part: feature:337705-337859:-1:exon
so has part: feature:336789-337074:-1:exon
so has part: feature:335337-335545:-1:exon
so has part: feature:335008-335054:-1:exon

XP_027376194.1
type: Protein
SIO_000068: ncbiprotein

position:335008:-1
position: 335008
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1045821-1046017:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:990829-990900:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:981478-981549:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:914350-914421:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:572716-572787:-1:exon

urn:…
SIO_000300: 6
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urn:…
SIO_000300: 7
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urn:…
SIO_000300: 8
SIO_000628: feature:496146-496309:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:486296-486437:-1:exon

urn:…
SIO_000300: 10
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urn:…
SIO_000300: 12
SIO_000628: feature:463287-463358:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:447663-447806:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:446100-446263:-1:exon

urn:…
SIO_000300: 15
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urn:…
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SIO_000628: feature:433261-433335:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:424701-424844:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:423646-423789:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:420395-420558:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:419104-419236:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:395828-395896:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:393865-393936:-1:exon

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SIO_000628: feature:392993-393064:-1:exon

urn:…
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SIO_000628: feature:383375-383446:-1:exon

urn:…
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SIO_000628: feature:380858-381021:-1:exon

urn:…
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SIO_000628: feature:367062-367201:-1:exon

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SIO_000628: feature:364246-364339:-1:exon

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SIO_000628: feature:357077-357214:-1:exon

urn:…
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SIO_000628: feature:355340-355580:-1:exon

urn:…
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SIO_000628: feature:353228-353358:-1:exon

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SIO_000300: 33
SIO_000628: feature:337705-337859:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:336789-337074:-1:exon

urn:…
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SIO_000628: feature:335337-335545:-1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:335008-335054:-1:exon

SPDL1
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: SPDL1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1359496..1392653
location: region:1359496-1392653:1
so has part: feature:1359496-1392653:1:exon
subclass of: SO_0000010

113879065
type: Gene
SIO_000068: ncbigene

position:1359496:1
position: 1359496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1392653:1
position: 1392653
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1359496-1392653:1:exon

SPDL1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: SPDL1
product: spindle apparatus coiled-coil protein 1, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 ESTs, 1 long SRA read, 3 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 76 samples with support for all annotated introns
transcript id: XM_027520311.1
SIO_010081: SPDL1
subclass of: SO_0000673
so part of: SPDL1
location: join(1359496..1359643,1367858..1368033,1369574..1369750,1373846..1374037,1376363..1376512,1376613..1376711,1376787..1376897,1379022..1379162,1384834..1384937,1385749..1385936,1389241..1389583,1391979..1392653)
location: region:1359496-1392653:1
so has part: feature:1359496-1359643:1:exon
so has part: feature:1367858-1368033:1:exon
so has part: feature:1369574-1369750:1:exon
so has part: feature:1373846-1374037:1:exon
so has part: feature:1376363-1376512:1:exon
so has part: feature:1376613-1376711:1:exon
so has part: feature:1376787-1376897:1:exon
so has part: feature:1379022-1379162:1:exon
so has part: feature:1384834-1384937:1:exon
so has part: feature:1385749-1385936:1:exon
so has part: feature:1389241-1389583:1:exon
so has part: feature:1391979-1392653:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1359496-1359643:1:exon

position:1359643:1
position: 1359643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1367858-1368033:1:exon

position:1367858:1
position: 1367858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1368033:1
position: 1368033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1369574-1369750:1:exon

position:1369574:1
position: 1369574
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1369750:1
position: 1369750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1373846-1374037:1:exon

position:1373846:1
position: 1373846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1374037:1
position: 1374037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1376363-1376512:1:exon

position:1376363:1
position: 1376363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1376512:1
position: 1376512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1376613-1376711:1:exon

position:1376613:1
position: 1376613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1376711:1
position: 1376711
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1376787-1376897:1:exon

position:1376787:1
position: 1376787
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1376897:1
position: 1376897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1379022-1379162:1:exon

position:1379022:1
position: 1379022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1379162:1
position: 1379162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1384834-1384937:1:exon

position:1384834:1
position: 1384834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1384937:1
position: 1384937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1385749-1385936:1:exon

position:1385749:1
position: 1385749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1385936:1
position: 1385936
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1389241-1389583:1:exon

position:1389241:1
position: 1389241
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1389583:1
position: 1389583
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1391979-1392653:1:exon

position:1391979:1
position: 1391979
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SPDL1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: SPDL1
product: spindle apparatus coiled-coil protein 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 1 long SRA read, 2 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 79 samples with support for all annotated introns
transcript id: XM_027520309.1
SIO_010081: SPDL1
subclass of: SO_0000673
so part of: SPDL1
location: join(1359505..1359643,1367861..1368033,1369574..1369750,1373846..1374037,1376363..1376512,1376613..1376711,1376787..1376897,1379022..1379162,1384834..1384937,1385749..1385936,1389241..1389782)
location: region:1359505-1389782:1
so has part: feature:1359505-1359643:1:exon
so has part: feature:1367861-1368033:1:exon
so has part: feature:1369574-1369750:1:exon
so has part: feature:1373846-1374037:1:exon
so has part: feature:1376363-1376512:1:exon
so has part: feature:1376613-1376711:1:exon
so has part: feature:1376787-1376897:1:exon
so has part: feature:1379022-1379162:1:exon
so has part: feature:1384834-1384937:1:exon
so has part: feature:1385749-1385936:1:exon
so has part: feature:1389241-1389782:1:exon

position:1359505:1
position: 1359505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1389782:1
position: 1389782
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1359505-1359643:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1367861-1368033:1:exon

position:1367861:1
position: 1367861
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1369574-1369750:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1373846-1374037:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1376363-1376512:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1376613-1376711:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1376787-1376897:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1379022-1379162:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1384834-1384937:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1385749-1385936:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1389241-1389782:1:exon

SPDL1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: SPDL1
product: spindle apparatus coiled-coil protein 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 77 samples with support for all annotated introns
transcript id: XM_027520307.1
SIO_010081: SPDL1
subclass of: SO_0000673
so part of: SPDL1
location: join(1359510..1359643,1367858..1368033,1369574..1369750,1373846..1374037,1376363..1376512,1376613..1376711,1376787..1376897,1379022..1379162,1384834..1384937,1385749..1385936,1389241..1390197)
location: region:1359510-1390197:1
so has part: feature:1359510-1359643:1:exon
so has part: feature:1367858-1368033:1:exon
so has part: feature:1369574-1369750:1:exon
so has part: feature:1373846-1374037:1:exon
so has part: feature:1376363-1376512:1:exon
so has part: feature:1376613-1376711:1:exon
so has part: feature:1376787-1376897:1:exon
so has part: feature:1379022-1379162:1:exon
so has part: feature:1384834-1384937:1:exon
so has part: feature:1385749-1385936:1:exon
so has part: feature:1389241-1390197:1:exon

position:1359510:1
position: 1359510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1390197:1
position: 1390197
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1359510-1359643:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1367858-1368033:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1369574-1369750:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1373846-1374037:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1376363-1376512:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1376613-1376711:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1376787-1376897:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1379022-1379162:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1384834-1384937:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1385749-1385936:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1389241-1390197:1:exon

SPDL1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: SPDL1
product: spindle apparatus coiled-coil protein 1, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 9 ESTs, 3 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 36 samples with support for all annotated introns
transcript id: XM_027520312.1
SIO_010081: SPDL1
subclass of: SO_0000673
so part of: SPDL1
location: join(1359528..1359629,1367858..1368033,1369574..1369750,1373846..1374037,1376363..1376512,1376613..1376711,1376787..1376897,1379022..1379162,1384834..1384937,1385749..1385936,1389241..1389583,1391979..1392653)
location: region:1359528-1392653:1
so has part: feature:1359528-1359629:1:exon
so has part: feature:1367858-1368033:1:exon
so has part: feature:1369574-1369750:1:exon
so has part: feature:1373846-1374037:1:exon
so has part: feature:1376363-1376512:1:exon
so has part: feature:1376613-1376711:1:exon
so has part: feature:1376787-1376897:1:exon
so has part: feature:1379022-1379162:1:exon
so has part: feature:1384834-1384937:1:exon
so has part: feature:1385749-1385936:1:exon
so has part: feature:1389241-1389583:1:exon
so has part: feature:1391979-1392653:1:exon

position:1359528:1
position: 1359528
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1359528-1359629:1:exon

position:1359629:1
position: 1359629
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1367858-1368033:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1369574-1369750:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1373846-1374037:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1376363-1376512:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1376613-1376711:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1376787-1376897:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1379022-1379162:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1384834-1384937:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1385749-1385936:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1389241-1389583:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1391979-1392653:1:exon

SPDL1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: SPDL1
product: spindle apparatus coiled-coil protein 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 2 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 36 samples with support for all annotated introns
transcript id: XM_027520310.1
SIO_010081: SPDL1
subclass of: SO_0000673
so part of: SPDL1
location: join(1359528..1359629,1367858..1368033,1369574..1369750,1373846..1374037,1376363..1376512,1376613..1376711,1376787..1376897,1379022..1379162,1384834..1384937,1385749..1385936,1389241..1389782)
location: region:1359528-1389782:1
so has part: feature:1359528-1359629:1:exon
so has part: feature:1367858-1368033:1:exon
so has part: feature:1369574-1369750:1:exon
so has part: feature:1373846-1374037:1:exon
so has part: feature:1376363-1376512:1:exon
so has part: feature:1376613-1376711:1:exon
so has part: feature:1376787-1376897:1:exon
so has part: feature:1379022-1379162:1:exon
so has part: feature:1384834-1384937:1:exon
so has part: feature:1385749-1385936:1:exon
so has part: feature:1389241-1389782:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1359528-1359629:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1367858-1368033:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1369574-1369750:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1373846-1374037:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1376363-1376512:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1376613-1376711:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1376787-1376897:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1379022-1379162:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1384834-1384937:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1385749-1385936:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1389241-1389782:1:exon

SPDL1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: SPDL1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein Spindly isoform X2
translation: MESDVIADLRCKLKETEEERRKAAQYGLQLVESQNELQNQLDKCRNEMMTLTESYEQEKYTLQREVELKSRMLESLSSECETIKQQQKMHLEQLEETLSRSHGQEVNELKKKLETLKAELDEARLSEKQLKHKVDHQEKLLSSKSKEMQMSERVHESVSSETLTLQIELTEMENVKTTLQEEVNELQYRQEQLELLNANLMRQVDRLKGEKEEREKEAVSYYDALEKARVVNQDLQVQLDQALQQALDPNSKGNSLFAEVEDRRAAMERQLISMKVKYQSLKKQNAFNREQMQRMKVQIATLLQMKGSQAEFEQQERLLAMLEQKNGEIKHLLGEIRNLEKFKSLYESMESKPSANSVALEDDTYYTDLLQIKLDNLNKESESIKGELSIQRMKALLESQRALDIERKLFLNERHLQLSQSENMKLRAKLDELKLKYEPEEKIEVPVLKKRREVLPVDISTPNGVCAPSAVGEEDYRLSPQKEEAQPCSNGLEDNNLQLEKTVSVSTSGVILSPYKSLTLDIQPRKEKKCVKLTGVPADSEALSERSRNTPNSPRLAAESRLQREVKQGKETASKLEKAACKKSYPTVYVSSKSTPETQCPQQ
SIO_010081: SPDL1
subclass of: SO_0000673
so part of: SPDL1
location: join(1367875..1368033,1369574..1369750,1373846..1374037,1376363..1376512,1376613..1376711,1376787..1376897,1379022..1379162,1384834..1384937,1385749..1385936,1389241..1389583,1391979..1392126)
location: region:1367875-1392126:1
so has part: feature:1367875-1368033:1:exon
so has part: feature:1369574-1369750:1:exon
so has part: feature:1373846-1374037:1:exon
so has part: feature:1376363-1376512:1:exon
so has part: feature:1376613-1376711:1:exon
so has part: feature:1376787-1376897:1:exon
so has part: feature:1379022-1379162:1:exon
so has part: feature:1384834-1384937:1:exon
so has part: feature:1385749-1385936:1:exon
so has part: feature:1389241-1389583:1:exon
so has part: feature:1391979-1392126:1:exon

XP_027376112.1
type: Protein
SIO_000068: ncbiprotein

position:1367875:1
position: 1367875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1392126:1
position: 1392126
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1367875-1368033:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1369574-1369750:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1373846-1374037:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1376363-1376512:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1376613-1376711:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1376787-1376897:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1379022-1379162:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1384834-1384937:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1385749-1385936:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1389241-1389583:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1391979-1392126:1:exon

SPDL1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: SPDL1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein Spindly isoform X2
translation: MESDVIADLRCKLKETEEERRKAAQYGLQLVESQNELQNQLDKCRNEMMTLTESYEQEKYTLQREVELKSRMLESLSSECETIKQQQKMHLEQLEETLSRSHGQEVNELKKKLETLKAELDEARLSEKQLKHKVDHQEKLLSSKSKEMQMSERVHESVSSETLTLQIELTEMENVKTTLQEEVNELQYRQEQLELLNANLMRQVDRLKGEKEEREKEAVSYYDALEKARVVNQDLQVQLDQALQQALDPNSKGNSLFAEVEDRRAAMERQLISMKVKYQSLKKQNAFNREQMQRMKVQIATLLQMKGSQAEFEQQERLLAMLEQKNGEIKHLLGEIRNLEKFKSLYESMESKPSANSVALEDDTYYTDLLQIKLDNLNKESESIKGELSIQRMKALLESQRALDIERKLFLNERHLQLSQSENMKLRAKLDELKLKYEPEEKIEVPVLKKRREVLPVDISTPNGVCAPSAVGEEDYRLSPQKEEAQPCSNGLEDNNLQLEKTVSVSTSGVILSPYKSLTLDIQPRKEKKCVKLTGVPADSEALSERSRNTPNSPRLAAESRLQREVKQGKETASKLEKAACKKSYPTVYVSSKSTPETQCPQQ
SIO_010081: SPDL1
subclass of: SO_0000673
so part of: SPDL1
location: join(1367875..1368033,1369574..1369750,1373846..1374037,1376363..1376512,1376613..1376711,1376787..1376897,1379022..1379162,1384834..1384937,1385749..1385936,1389241..1389583,1391979..1392126)
location: region:1367875-1392126:1
so has part: feature:1367875-1368033:1:exon
so has part: feature:1369574-1369750:1:exon
so has part: feature:1373846-1374037:1:exon
so has part: feature:1376363-1376512:1:exon
so has part: feature:1376613-1376711:1:exon
so has part: feature:1376787-1376897:1:exon
so has part: feature:1379022-1379162:1:exon
so has part: feature:1384834-1384937:1:exon
so has part: feature:1385749-1385936:1:exon
so has part: feature:1389241-1389583:1:exon
so has part: feature:1391979-1392126:1:exon

XP_027376113.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1367875-1368033:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1369574-1369750:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1373846-1374037:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1376363-1376512:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1376613-1376711:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1376787-1376897:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1379022-1379162:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1384834-1384937:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1385749-1385936:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1389241-1389583:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1391979-1392126:1:exon

SPDL1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: SPDL1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein Spindly isoform X1
translation: MESDVIADLRCKLKETEEERRKAAQYGLQLVESQNELQNQLDKCRNEMMTLTESYEQEKYTLQREVELKSRMLESLSSECETIKQQQKMHLEQLEETLSRSHGQEVNELKKKLETLKAELDEARLSEKQLKHKVDHQEKLLSSKSKEMQMSERVHESVSSETLTLQIELTEMENVKTTLQEEVNELQYRQEQLELLNANLMRQVDRLKGEKEEREKEAVSYYDALEKARVVNQDLQVQLDQALQQALDPNSKGNSLFAEVEDRRAAMERQLISMKVKYQSLKKQNAFNREQMQRMKVQIATLLQMKGSQAEFEQQERLLAMLEQKNGEIKHLLGEIRNLEKFKSLYESMESKPSANSVALEDDTYYTDLLQIKLDNLNKESESIKGELSIQRMKALLESQRALDIERKLFLNERHLQLSQSENMKLRAKLDELKLKYEPEEKIEVPVLKKRREVLPVDISTPNGVCAPSAVGEEDYRLSPQKEEAQPCSNGLEDNNLQLEKTVSVSTSGVILSPYKSLTLDIQPRKEKKCVKLTGVPADSEALSERSRNTPNSPRSVSSLLQGSEQPSPSCLYRCMNCAVCFLIYFLSIVCSIIPQFHLPTFQFSKTLRKTKMISRGKDS
SIO_010081: SPDL1
subclass of: SO_0000673
so part of: SPDL1
location: join(1367875..1368033,1369574..1369750,1373846..1374037,1376363..1376512,1376613..1376711,1376787..1376897,1379022..1379162,1384834..1384937,1385749..1385936,1389241..1389782)
location: region:1367875-1389782:1
so has part: feature:1367875-1368033:1:exon
so has part: feature:1369574-1369750:1:exon
so has part: feature:1373846-1374037:1:exon
so has part: feature:1376363-1376512:1:exon
so has part: feature:1376613-1376711:1:exon
so has part: feature:1376787-1376897:1:exon
so has part: feature:1379022-1379162:1:exon
so has part: feature:1384834-1384937:1:exon
so has part: feature:1385749-1385936:1:exon
so has part: feature:1389241-1389782:1:exon

XP_027376108.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1367875-1368033:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1369574-1369750:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1373846-1374037:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1376363-1376512:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1376613-1376711:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1376787-1376897:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1379022-1379162:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1384834-1384937:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1385749-1385936:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1389241-1389782:1:exon

SPDL1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: SPDL1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein Spindly isoform X1
translation: MESDVIADLRCKLKETEEERRKAAQYGLQLVESQNELQNQLDKCRNEMMTLTESYEQEKYTLQREVELKSRMLESLSSECETIKQQQKMHLEQLEETLSRSHGQEVNELKKKLETLKAELDEARLSEKQLKHKVDHQEKLLSSKSKEMQMSERVHESVSSETLTLQIELTEMENVKTTLQEEVNELQYRQEQLELLNANLMRQVDRLKGEKEEREKEAVSYYDALEKARVVNQDLQVQLDQALQQALDPNSKGNSLFAEVEDRRAAMERQLISMKVKYQSLKKQNAFNREQMQRMKVQIATLLQMKGSQAEFEQQERLLAMLEQKNGEIKHLLGEIRNLEKFKSLYESMESKPSANSVALEDDTYYTDLLQIKLDNLNKESESIKGELSIQRMKALLESQRALDIERKLFLNERHLQLSQSENMKLRAKLDELKLKYEPEEKIEVPVLKKRREVLPVDISTPNGVCAPSAVGEEDYRLSPQKEEAQPCSNGLEDNNLQLEKTVSVSTSGVILSPYKSLTLDIQPRKEKKCVKLTGVPADSEALSERSRNTPNSPRSVSSLLQGSEQPSPSCLYRCMNCAVCFLIYFLSIVCSIIPQFHLPTFQFSKTLRKTKMISRGKDS
SIO_010081: SPDL1
subclass of: SO_0000673
so part of: SPDL1
location: join(1367875..1368033,1369574..1369750,1373846..1374037,1376363..1376512,1376613..1376711,1376787..1376897,1379022..1379162,1384834..1384937,1385749..1385936,1389241..1389782)
location: region:1367875-1389782:1
so has part: feature:1367875-1368033:1:exon
so has part: feature:1369574-1369750:1:exon
so has part: feature:1373846-1374037:1:exon
so has part: feature:1376363-1376512:1:exon
so has part: feature:1376613-1376711:1:exon
so has part: feature:1376787-1376897:1:exon
so has part: feature:1379022-1379162:1:exon
so has part: feature:1384834-1384937:1:exon
so has part: feature:1385749-1385936:1:exon
so has part: feature:1389241-1389782:1:exon

XP_027376110.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1367875-1368033:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1369574-1369750:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1373846-1374037:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1376363-1376512:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1376613-1376711:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1376787-1376897:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1379022-1379162:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1384834-1384937:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1385749-1385936:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1389241-1389782:1:exon

SPDL1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: SPDL1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein Spindly isoform X1
translation: MESDVIADLRCKLKETEEERRKAAQYGLQLVESQNELQNQLDKCRNEMMTLTESYEQEKYTLQREVELKSRMLESLSSECETIKQQQKMHLEQLEETLSRSHGQEVNELKKKLETLKAELDEARLSEKQLKHKVDHQEKLLSSKSKEMQMSERVHESVSSETLTLQIELTEMENVKTTLQEEVNELQYRQEQLELLNANLMRQVDRLKGEKEEREKEAVSYYDALEKARVVNQDLQVQLDQALQQALDPNSKGNSLFAEVEDRRAAMERQLISMKVKYQSLKKQNAFNREQMQRMKVQIATLLQMKGSQAEFEQQERLLAMLEQKNGEIKHLLGEIRNLEKFKSLYESMESKPSANSVALEDDTYYTDLLQIKLDNLNKESESIKGELSIQRMKALLESQRALDIERKLFLNERHLQLSQSENMKLRAKLDELKLKYEPEEKIEVPVLKKRREVLPVDISTPNGVCAPSAVGEEDYRLSPQKEEAQPCSNGLEDNNLQLEKTVSVSTSGVILSPYKSLTLDIQPRKEKKCVKLTGVPADSEALSERSRNTPNSPRSVSSLLQGSEQPSPSCLYRCMNCAVCFLIYFLSIVCSIIPQFHLPTFQFSKTLRKTKMISRGKDS
SIO_010081: SPDL1
subclass of: SO_0000673
so part of: SPDL1
location: join(1367875..1368033,1369574..1369750,1373846..1374037,1376363..1376512,1376613..1376711,1376787..1376897,1379022..1379162,1384834..1384937,1385749..1385936,1389241..1389782)
location: region:1367875-1389782:1
so has part: feature:1367875-1368033:1:exon
so has part: feature:1369574-1369750:1:exon
so has part: feature:1373846-1374037:1:exon
so has part: feature:1376363-1376512:1:exon
so has part: feature:1376613-1376711:1:exon
so has part: feature:1376787-1376897:1:exon
so has part: feature:1379022-1379162:1:exon
so has part: feature:1384834-1384937:1:exon
so has part: feature:1385749-1385936:1:exon
so has part: feature:1389241-1389782:1:exon

XP_027376111.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1367875-1368033:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1369574-1369750:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1373846-1374037:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1376363-1376512:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1376613-1376711:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1376787-1376897:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1379022-1379162:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1384834-1384937:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1385749-1385936:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1389241-1389782:1:exon

DOCK2
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: DOCK2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1426984..1884772
location: region:1426984-1884772:1
so has part: feature:1426984-1884772:1:exon
subclass of: SO_0000010

113878974
type: Gene
SIO_000068: ncbigene

position:1426984:1
position: 1426984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1884772:1
position: 1884772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1426984-1884772:1:exon

DOCK2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: DOCK2
product: dedicator of cytokinesis 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
transcript id: XM_027520183.1
SIO_010081: DOCK2
subclass of: SO_0000673
so part of: DOCK2
location: join(1426984..1427090,1446326..1446409,1457523..1457563,1458696..1458751,1459209..1459305,1461783..1461931,1467640..1467775,1469759..1469913,1476188..1476269,1486322..1486457,1488790..1488865,1489827..1489903,1490494..1490619,1491832..1491956,1500404..1500502,1502468..1502540,1502661..1502764,1504732..1504915,1505073..1505170,1509143..1509232,1510374..1510474,1511257..1511391,1540320..1540428,1552266..1552336,1554406..1554512,1597320..1597468,1630479..1630574,1774154..1774252,1777168..1777262,1793381..1793459,1805906..1806006,1806102..1806160,1817829..1817977,1827931..1828016,1835281..1835437,1837802..1837842,1841877..1841967,1842614..1842733,1847285..1847374,1849137..1849241,1851101..1851242,1857038..1857119,1858474..1858558,1859287..1859373,1864579..1864755,1866182..1866265,1874696..1874833,1879176..1879303,1880147..1880318,1881326..1881446,1882972..1883114,1884200..1884772)
location: region:1426984-1884772:1
so has part: feature:1426984-1427090:1:exon
so has part: feature:1446326-1446409:1:exon
so has part: feature:1457523-1457563:1:exon
so has part: feature:1458696-1458751:1:exon
so has part: feature:1459209-1459305:1:exon
so has part: feature:1461783-1461931:1:exon
so has part: feature:1467640-1467775:1:exon
so has part: feature:1469759-1469913:1:exon
so has part: feature:1476188-1476269:1:exon
so has part: feature:1486322-1486457:1:exon
so has part: feature:1488790-1488865:1:exon
so has part: feature:1489827-1489903:1:exon
so has part: feature:1490494-1490619:1:exon
so has part: feature:1491832-1491956:1:exon
so has part: feature:1500404-1500502:1:exon
so has part: feature:1502468-1502540:1:exon
so has part: feature:1502661-1502764:1:exon
so has part: feature:1504732-1504915:1:exon
so has part: feature:1505073-1505170:1:exon
so has part: feature:1509143-1509232:1:exon
so has part: feature:1510374-1510474:1:exon
so has part: feature:1511257-1511391:1:exon
so has part: feature:1540320-1540428:1:exon
so has part: feature:1552266-1552336:1:exon
so has part: feature:1554406-1554512:1:exon
so has part: feature:1597320-1597468:1:exon
so has part: feature:1630479-1630574:1:exon
so has part: feature:1774154-1774252:1:exon
so has part: feature:1777168-1777262:1:exon
so has part: feature:1793381-1793459:1:exon
so has part: feature:1805906-1806006:1:exon
so has part: feature:1806102-1806160:1:exon
so has part: feature:1817829-1817977:1:exon
so has part: feature:1827931-1828016:1:exon
so has part: feature:1835281-1835437:1:exon
so has part: feature:1837802-1837842:1:exon
so has part: feature:1841877-1841967:1:exon
so has part: feature:1842614-1842733:1:exon
so has part: feature:1847285-1847374:1:exon
so has part: feature:1849137-1849241:1:exon
so has part: feature:1851101-1851242:1:exon
so has part: feature:1857038-1857119:1:exon
so has part: feature:1858474-1858558:1:exon
so has part: feature:1859287-1859373:1:exon
so has part: feature:1864579-1864755:1:exon
so has part: feature:1866182-1866265:1:exon
so has part: feature:1874696-1874833:1:exon
so has part: feature:1879176-1879303:1:exon
so has part: feature:1880147-1880318:1:exon
so has part: feature:1881326-1881446:1:exon
so has part: feature:1882972-1883114:1:exon
so has part: feature:1884200-1884772:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1426984-1427090:1:exon

position:1427090:1
position: 1427090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1446326-1446409:1:exon

position:1446326:1
position: 1446326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1446409:1
position: 1446409
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1457523-1457563:1:exon

position:1457523:1
position: 1457523
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1457563:1
position: 1457563
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1458696-1458751:1:exon

position:1458696:1
position: 1458696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1458751:1
position: 1458751
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1459209-1459305:1:exon

position:1459209:1
position: 1459209
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1459305:1
position: 1459305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1461783-1461931:1:exon

position:1461783:1
position: 1461783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1461931:1
position: 1461931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1467640-1467775:1:exon

position:1467640:1
position: 1467640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1467775:1
position: 1467775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1469759-1469913:1:exon

position:1469759:1
position: 1469759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1469913:1
position: 1469913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1476188-1476269:1:exon

position:1476188:1
position: 1476188
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1476269:1
position: 1476269
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1486322-1486457:1:exon

position:1486322:1
position: 1486322
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1486457:1
position: 1486457
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1488790-1488865:1:exon

position:1488790:1
position: 1488790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1488865:1
position: 1488865
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1489827-1489903:1:exon

position:1489827:1
position: 1489827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1489903:1
position: 1489903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:1490494-1490619:1:exon

position:1490494:1
position: 1490494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1490619:1
position: 1490619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:1491832-1491956:1:exon

position:1491832:1
position: 1491832
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1491956:1
position: 1491956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:1500404-1500502:1:exon

position:1500404:1
position: 1500404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1500502:1
position: 1500502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:1502468-1502540:1:exon

position:1502468:1
position: 1502468
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1502540:1
position: 1502540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:1502661-1502764:1:exon

position:1502661:1
position: 1502661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1502764:1
position: 1502764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:1504732-1504915:1:exon

position:1504732:1
position: 1504732
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1504915:1
position: 1504915
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:1505073-1505170:1:exon

position:1505073:1
position: 1505073
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1505170:1
position: 1505170
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:1509143-1509232:1:exon

position:1509143:1
position: 1509143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1509232:1
position: 1509232
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:1510374-1510474:1:exon

position:1510374:1
position: 1510374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1510474:1
position: 1510474
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:1511257-1511391:1:exon

position:1511257:1
position: 1511257
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1511391:1
position: 1511391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:1540320-1540428:1:exon

position:1540320:1
position: 1540320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1540428:1
position: 1540428
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:1552266-1552336:1:exon

position:1552266:1
position: 1552266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1552336:1
position: 1552336
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:1554406-1554512:1:exon

position:1554406:1
position: 1554406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1554512:1
position: 1554512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:1597320-1597468:1:exon

position:1597320:1
position: 1597320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1597468:1
position: 1597468
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:1630479-1630574:1:exon

position:1630479:1
position: 1630479
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1630574:1
position: 1630574
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:1774154-1774252:1:exon

position:1774154:1
position: 1774154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1774252:1
position: 1774252
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:1777168-1777262:1:exon

position:1777168:1
position: 1777168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1777262:1
position: 1777262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 30
SIO_000628: feature:1793381-1793459:1:exon

position:1793381:1
position: 1793381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1793459:1
position: 1793459
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 31
SIO_000628: feature:1805906-1806006:1:exon

position:1805906:1
position: 1805906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1806006:1
position: 1806006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 32
SIO_000628: feature:1806102-1806160:1:exon

position:1806102:1
position: 1806102
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1806160:1
position: 1806160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 33
SIO_000628: feature:1817829-1817977:1:exon

position:1817829:1
position: 1817829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1817977:1
position: 1817977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 34
SIO_000628: feature:1827931-1828016:1:exon

position:1827931:1
position: 1827931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1828016:1
position: 1828016
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 35
SIO_000628: feature:1835281-1835437:1:exon

position:1835281:1
position: 1835281
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1835437:1
position: 1835437
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 36
SIO_000628: feature:1837802-1837842:1:exon

position:1837802:1
position: 1837802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1837842:1
position: 1837842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 37
SIO_000628: feature:1841877-1841967:1:exon

position:1841877:1
position: 1841877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1841967:1
position: 1841967
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 38
SIO_000628: feature:1842614-1842733:1:exon

position:1842614:1
position: 1842614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1842733:1
position: 1842733
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 39
SIO_000628: feature:1847285-1847374:1:exon

position:1847285:1
position: 1847285
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1847374:1
position: 1847374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 40
SIO_000628: feature:1849137-1849241:1:exon

position:1849137:1
position: 1849137
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1849241:1
position: 1849241
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 41
SIO_000628: feature:1851101-1851242:1:exon

position:1851101:1
position: 1851101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1851242:1
position: 1851242
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 42
SIO_000628: feature:1857038-1857119:1:exon

position:1857038:1
position: 1857038
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1857119:1
position: 1857119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 43
SIO_000628: feature:1858474-1858558:1:exon

position:1858474:1
position: 1858474
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1858558:1
position: 1858558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 44
SIO_000628: feature:1859287-1859373:1:exon

position:1859287:1
position: 1859287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1859373:1
position: 1859373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 45
SIO_000628: feature:1864579-1864755:1:exon

position:1864579:1
position: 1864579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1864755:1
position: 1864755
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 46
SIO_000628: feature:1866182-1866265:1:exon

position:1866182:1
position: 1866182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1866265:1
position: 1866265
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 47
SIO_000628: feature:1874696-1874833:1:exon

position:1874696:1
position: 1874696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1874833:1
position: 1874833
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 48
SIO_000628: feature:1879176-1879303:1:exon

position:1879176:1
position: 1879176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1879303:1
position: 1879303
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 49
SIO_000628: feature:1880147-1880318:1:exon

position:1880147:1
position: 1880147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1880318:1
position: 1880318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 50
SIO_000628: feature:1881326-1881446:1:exon

position:1881326:1
position: 1881326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1881446:1
position: 1881446
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 51
SIO_000628: feature:1882972-1883114:1:exon

position:1882972:1
position: 1882972
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1883114:1
position: 1883114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 52
SIO_000628: feature:1884200-1884772:1:exon

position:1884200:1
position: 1884200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

DOCK2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: DOCK2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: dedicator of cytokinesis protein 2
translation: MAPWRKTDKERHGVAIYNFQGSGTSQLSLQIGDVVRIQETCGDWYRGYLVKHKMLQGIFPKSFIYIKEVTVEKKRNIENIIPAEIPLAQEVTTTLWEWGSIWKQLYVASKKERFLQVQSMMYDLMEWRSQLLSGTLPKDELKELKQKVTSKIDYGNKILELDLIVRDEDGNILDPDNTSVISLFHAHEEATDKITERIKEEMSKDQPDYGMYSRISSSPTHSLYVFVRNFVCRIGEDAELFMSLYDPNKQMVISENYLVRWGSRGFPKEIEMLNNLKVVFTDLGNKDLNRDKIYLICQIVRVGKMDLKDTNTKKCTQGLRRPFGVAVMDITDIIKGKAESDEEKQHFIPFHPVTAENDFLHSLLGKVTASKGDSGGQGLWVTMKMLVGDIIQIRKDYPHLVDRTTVVARKLGFPEIIMPGDVRNDIYITLLQGDFDKYNKTTQRNVEVIMCVCAEDGKTLPNAICVGAGDKPMNEYRSVVYYQVKQPRWMETVKVAVPIEDMQRIHLRFMFRHRSSLESKDKGEKNFAMSYVKLMKEDGTTLHDGCHDLVVLKGDSKKMEDASSYLTLPSYRHHVENKGATLSRSSSSVGGLSVSSRDVFCISTLVCSTKLTQNVGLLGLLKWRVKPQLLQENLEKLKIVDGEEVVKFLQDTLDALFNIMMEHSQSDAYDILVFDALIYIIGLIADRKFQHFNTVLEAYIQQHFSATLAYKKLMTVLKTYLDTSSRGEQCEPILRTLKALEYVFKFIVRSRTLFSQLYEGKEQMEFEESMRRLFESINNLMKSQYKTTILLQVAALKYIPSVLHDVETVFDAKLLSQLLYEFYTCIPPVKLQKQKVQSMNEIVQSNLFKKQECRDILLPVITKELKELLEQKDDMQHQVQEKKYCVELLNSILEVLSCQDAAFTYHHIQEIMVQLLRTVNRTVITMGRDHVLISHFVACMTAVLNQMGDQHYSFYIETFPTSSELVDFLMETFIMFKDLIGKNVYPADWVAMSMVQNRVFLRAINKFAETMNQKFLENTNFEFQLWNNYFHLAVAFITQDSLQLEQFSHAKYNKILNKYGDMRRLIGFSIRDMWYKLGQNKICFIPGMVGPILEMTLIPEAELRKATIPIFFDMMLCEYQRSGDFKKFENEIILKLDHEVEGGRGDEQYMQLLESILMECAAEHPTIYKSVENFVNLVKGLLEKLLDYRGVMTDESKDNRMSCTVNLLNFYKDNNREEMYIRYLYKLRDLHLDCDNYTEAAYTLLLHTWLLKWSDEQCASQVMQTGQQHPQTHRQLKETLYDIIIGYFDKGKMWEEAISLCKELAEQYEMEIFDYELLSQNLIQQAKFYENIMKILRPKPDYFAVGYYGQGFPSFLRNKVFIYRGKEYERREDFQMQLMSQFPNAEKMNTTSAPGDDVKNAPGQYIQCFTVQPVLDEHPRFKNKPVPDQIINFYKSNYVQKFHYSRPVRRGTVDPENEFASMWIERTSFVTAYKLPGILRWFEVVHMSQTTISPLENAIETMSTANEKILMMINQYQSDETLPINPLSMLLNGIVDPAVMGGFAKYEKAFFTEEYTREHPEDQDKLTRLKDLIAWQIPFLGAGIKIHERRVSENLRPFHDRMEECFKNLKVKVEKEYGVREMPDFEDRRVGRPRSMLRSYRQMSIISMASLNSDCSTPSKATSESFDLEMAPPKTPKVEHEEPISPGSTLPEVKLRRSKKRAKRSSVVFADEKPSAESDLKRLSRKHEFMSDTNLSEHVAVAPRASILSQMSFASQSMPTIPALTLSVVSMPGMDEANASPRLSQTFLPLSDGDKKTLKRKKVNQFFKTMLAGKPTEEGKPTSDSTSTDL
SIO_010081: DOCK2
subclass of: SO_0000673
so part of: DOCK2
location: join(1427048..1427090,1446326..1446409,1457523..1457563,1458696..1458751,1459209..1459305,1461783..1461931,1467640..1467775,1469759..1469913,1476188..1476269,1486322..1486457,1488790..1488865,1489827..1489903,1490494..1490619,1491832..1491956,1500404..1500502,1502468..1502540,1502661..1502764,1504732..1504915,1505073..1505170,1509143..1509232,1510374..1510474,1511257..1511391,1540320..1540428,1552266..1552336,1554406..1554512,1597320..1597468,1630479..1630574,1774154..1774252,1777168..1777262,1793381..1793459,1805906..1806006,1806102..1806160,1817829..1817977,1827931..1828016,1835281..1835437,1837802..1837842,1841877..1841967,1842614..1842733,1847285..1847374,1849137..1849241,1851101..1851242,1857038..1857119,1858474..1858558,1859287..1859373,1864579..1864755,1866182..1866265,1874696..1874833,1879176..1879303,1880147..1880318,1881326..1881446,1882972..1883114,1884200..1884262)
location: region:1427048-1884262:1
so has part: feature:1427048-1427090:1:exon
so has part: feature:1446326-1446409:1:exon
so has part: feature:1457523-1457563:1:exon
so has part: feature:1458696-1458751:1:exon
so has part: feature:1459209-1459305:1:exon
so has part: feature:1461783-1461931:1:exon
so has part: feature:1467640-1467775:1:exon
so has part: feature:1469759-1469913:1:exon
so has part: feature:1476188-1476269:1:exon
so has part: feature:1486322-1486457:1:exon
so has part: feature:1488790-1488865:1:exon
so has part: feature:1489827-1489903:1:exon
so has part: feature:1490494-1490619:1:exon
so has part: feature:1491832-1491956:1:exon
so has part: feature:1500404-1500502:1:exon
so has part: feature:1502468-1502540:1:exon
so has part: feature:1502661-1502764:1:exon
so has part: feature:1504732-1504915:1:exon
so has part: feature:1505073-1505170:1:exon
so has part: feature:1509143-1509232:1:exon
so has part: feature:1510374-1510474:1:exon
so has part: feature:1511257-1511391:1:exon
so has part: feature:1540320-1540428:1:exon
so has part: feature:1552266-1552336:1:exon
so has part: feature:1554406-1554512:1:exon
so has part: feature:1597320-1597468:1:exon
so has part: feature:1630479-1630574:1:exon
so has part: feature:1774154-1774252:1:exon
so has part: feature:1777168-1777262:1:exon
so has part: feature:1793381-1793459:1:exon
so has part: feature:1805906-1806006:1:exon
so has part: feature:1806102-1806160:1:exon
so has part: feature:1817829-1817977:1:exon
so has part: feature:1827931-1828016:1:exon
so has part: feature:1835281-1835437:1:exon
so has part: feature:1837802-1837842:1:exon
so has part: feature:1841877-1841967:1:exon
so has part: feature:1842614-1842733:1:exon
so has part: feature:1847285-1847374:1:exon
so has part: feature:1849137-1849241:1:exon
so has part: feature:1851101-1851242:1:exon
so has part: feature:1857038-1857119:1:exon
so has part: feature:1858474-1858558:1:exon
so has part: feature:1859287-1859373:1:exon
so has part: feature:1864579-1864755:1:exon
so has part: feature:1866182-1866265:1:exon
so has part: feature:1874696-1874833:1:exon
so has part: feature:1879176-1879303:1:exon
so has part: feature:1880147-1880318:1:exon
so has part: feature:1881326-1881446:1:exon
so has part: feature:1882972-1883114:1:exon
so has part: feature:1884200-1884262:1:exon

XP_027375984.1
type: Protein
SIO_000068: ncbiprotein

position:1427048:1
position: 1427048
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1884262:1
position: 1884262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1427048-1427090:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1446326-1446409:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1457523-1457563:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1458696-1458751:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1459209-1459305:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1461783-1461931:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1467640-1467775:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1469759-1469913:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1476188-1476269:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1486322-1486457:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1488790-1488865:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1489827-1489903:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1490494-1490619:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1491832-1491956:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1500404-1500502:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1502468-1502540:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1502661-1502764:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1504732-1504915:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1505073-1505170:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1509143-1509232:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1510374-1510474:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1511257-1511391:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:1540320-1540428:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:1552266-1552336:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:1554406-1554512:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:1597320-1597468:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:1630479-1630574:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:1774154-1774252:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:1777168-1777262:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:1793381-1793459:1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:1805906-1806006:1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:1806102-1806160:1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:1817829-1817977:1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:1827931-1828016:1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:1835281-1835437:1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:1837802-1837842:1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:1841877-1841967:1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:1842614-1842733:1:exon

urn:…
SIO_000300: 39
SIO_000628: feature:1847285-1847374:1:exon

urn:…
SIO_000300: 40
SIO_000628: feature:1849137-1849241:1:exon

urn:…
SIO_000300: 41
SIO_000628: feature:1851101-1851242:1:exon

urn:…
SIO_000300: 42
SIO_000628: feature:1857038-1857119:1:exon

urn:…
SIO_000300: 43
SIO_000628: feature:1858474-1858558:1:exon

urn:…
SIO_000300: 44
SIO_000628: feature:1859287-1859373:1:exon

urn:…
SIO_000300: 45
SIO_000628: feature:1864579-1864755:1:exon

urn:…
SIO_000300: 46
SIO_000628: feature:1866182-1866265:1:exon

urn:…
SIO_000300: 47
SIO_000628: feature:1874696-1874833:1:exon

urn:…
SIO_000300: 48
SIO_000628: feature:1879176-1879303:1:exon

urn:…
SIO_000300: 49
SIO_000628: feature:1880147-1880318:1:exon

urn:…
SIO_000300: 50
SIO_000628: feature:1881326-1881446:1:exon

urn:…
SIO_000300: 51
SIO_000628: feature:1882972-1883114:1:exon

urn:…
SIO_000300: 52
SIO_000628: feature:1884200-1884262:1:exon

INSYN2B
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: INSYN2B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1648400..1772352)
location: region:1648400-1772352:-1
so has part: feature:1648400-1772352:-1:exon
subclass of: SO_0000010

113878975
type: Gene
SIO_000068: ncbigene

position:1648400:-1
position: 1648400
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1772352:-1
position: 1772352
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1648400-1772352:-1:exon

INSYN2B
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: INSYN2B
product: inhibitory synaptic factor family member 2B
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_027520184.1
SIO_010081: INSYN2B
subclass of: SO_0000673
so part of: INSYN2B
location: complement(join(1648400..1651393,1671494..1671568,1672694..1674914,1772139..1772352))
location: region:1648400-1772352:-1
so has part: feature:1772139-1772352:-1:exon
so has part: feature:1672694-1674914:-1:exon
so has part: feature:1671494-1671568:-1:exon
so has part: feature:1648400-1651393:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1772139-1772352:-1:exon

position:1772139:-1
position: 1772139
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1672694-1674914:-1:exon

position:1672694:-1
position: 1672694
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1674914:-1
position: 1674914
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1671494-1671568:-1:exon

position:1671494:-1
position: 1671494
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1671568:-1
position: 1671568
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1648400-1651393:-1:exon

position:1651393:-1
position: 1651393
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

INSYN2B
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: INSYN2B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein INSYN2B
translation: MAQQSMKVRPVLLKRNSLESVELVKQPHHRRSKSQQVRFKEDGTSKTPPGLAEVDVQASEDPAVMGKTQASRHHHLPTYSLSFPRSQKAGGFRNIAIQTSPSLRKHFPVFKRKRLTASKSLVEMPTASQSAIQVNGNLSEQDIVSSDLAYLRLAQHLEDGPRRVKVSHPFLPRMSKVQSNGPVSLCFEAGTWRALEKVTAAIQVPDDIYHSPTWAGRESTLSPDWSAEMSNSIPPSVDRRPGDGRRELPPDSERIPPCLNAPSRANHMPGTGNLQPELLLPKDNSDDKDLGPLSSRSKERCAPSHPRTHSSPPPGSQSQPAQPGGASDCSSLSNNYQDLQSLQTNSESGSAPVCQEQTAKNPIKSDIPELQNCPGSGHLPSSLPNRETKQQRVTGGINPIHLVQGELCDLQGRLQSVEESLHSNQEKIKVLLNVIQDLEKARALTEGRNFYRTGQDLNNCSTCQNTACIIYSVEYDFRQQEGRFHEVLQSLEEVELAEEASPPPKSPAEPPVPEKQDLRRKTKKVKKKCFWWI
SIO_010081: INSYN2B
subclass of: SO_0000673
so part of: INSYN2B
location: complement(join(1651207..1651393,1671494..1671568,1672694..1674033))
location: region:1651207-1674033:-1
so has part: feature:1672694-1674033:-1:exon
so has part: feature:1671494-1671568:-1:exon
so has part: feature:1651207-1651393:-1:exon

XP_027375985.1
type: Protein
SIO_000068: ncbiprotein

position:1651207:-1
position: 1651207
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1674033:-1
position: 1674033
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1672694-1674033:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1671494-1671568:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1651207-1651393:-1:exon

FOXI1
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: FOXI1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1894842..1898692
location: region:1894842-1898692:1
so has part: feature:1894842-1898692:1:exon
subclass of: SO_0000010

113879214
type: Gene
SIO_000068: ncbigene

position:1894842:1
position: 1894842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1898692:1
position: 1898692
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1894842-1898692:1:exon

FOXI1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: FOXI1
product: forkhead box I1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs, 6 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transcript id: XM_027520513.1
SIO_010081: FOXI1
subclass of: SO_0000673
so part of: FOXI1
location: join(1894842..1895435,1897042..1898692)
location: region:1894842-1898692:1
so has part: feature:1894842-1895435:1:exon
so has part: feature:1897042-1898692:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1894842-1895435:1:exon

position:1895435:1
position: 1895435
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1897042-1898692:1:exon

position:1897042:1
position: 1897042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

FOXI1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: FOXI1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: forkhead box protein I1
translation: MSSFDLPAPSPPRCSPQFPSLGQEPPEMNLYYENFFHPQGAPSPQRPPSFEGGGEYGAAPNPYLWLNGPAVTPPPYLPGGSPFLPQAYGGVQRQLLPTGMPTLGAGDLGWLPLPSQEELMKLVRPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFKKVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRKSDVSSSTGSMASEKTEAGLLAGSPKTAEAQDILDGAAPGPTGSPEKQPTPPPPGTPCLSSFLSTMSAYVSGPSPVSRPAATTPGLSLEPADKGVQNSLSFSSYTPLTNISGPAGGGEWASPMPSNALGYGGSVLNQFSSPFYGSVSTNSVLYPREGTEV
SIO_010081: FOXI1
subclass of: SO_0000673
so part of: FOXI1
location: join(1894859..1895435,1897042..1897604)
location: region:1894859-1897604:1
so has part: feature:1894859-1895435:1:exon
so has part: feature:1897042-1897604:1:exon

XP_027376314.1
type: Protein
SIO_000068: ncbiprotein

position:1894859:1
position: 1894859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1897604:1
position: 1897604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1894859-1895435:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1897042-1897604:1:exon

LOC113879301
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: LOC113879301
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(1914808..1914913)
location: region:1914808-1914913:-1
so has part: feature:1914808-1914913:-1:exon
subclass of: SO_0000623

113879301
type: Gene
SIO_000068: ncbigene

position:1914808:-1
position: 1914808
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1914913:-1
position: 1914913
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1914808-1914913:-1:exon

LOC113879301
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 30522
nc RNA class: snRNA
gene: LOC113879301
product: U6 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_003507275.1
SIO_010081: LOC113879301
subclass of: SO_0000673
so part of: LOC113879301
location: complement(1914808..1914913)
location: region:1914808-1914913:-1
so has part: feature:1914808-1914913:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1914808-1914913:-1:exon

C20H5orf58
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: C20H5orf58
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2004640..2013468
location: region:2004640-2013468:1
so has part: feature:2004640-2013468:1:exon
subclass of: SO_0000010

113879143
type: Gene
SIO_000068: ncbigene

position:2004640:1
position: 2004640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2013468:1
position: 2013468
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2004640-2013468:1:exon

C20H5orf58
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: C20H5orf58
product: chromosome 20 C5orf58 homolog
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_027520412.1
SIO_010081: C20H5orf58
subclass of: SO_0000673
so part of: C20H5orf58
location: join(2004640..2004717,2005985..2006078,2012589..2013468)
location: region:2004640-2013468:1
so has part: feature:2004640-2004717:1:exon
so has part: feature:2005985-2006078:1:exon
so has part: feature:2012589-2013468:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2004640-2004717:1:exon

position:2004717:1
position: 2004717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2005985-2006078:1:exon

position:2005985:1
position: 2005985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2006078:1
position: 2006078
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2012589-2013468:1:exon

position:2012589:1
position: 2012589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

C20H5orf58
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: C20H5orf58
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: putative uncharacterized protein C5orf58 homolog
translation: MIKNNVTDHKLNVEAIIKNINTISLELKKMNELSQLLLCDLTLHFSHPVKTDDLKETERNSPHFEESKMPDLSLASDSF
SIO_010081: C20H5orf58
subclass of: SO_0000673
so part of: C20H5orf58
location: join(2005985..2006078,2012589..2012734)
location: region:2005985-2012734:1
so has part: feature:2005985-2006078:1:exon
so has part: feature:2012589-2012734:1:exon

XP_027376213.1
type: Protein
SIO_000068: ncbiprotein

position:2012734:1
position: 2012734
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2005985-2006078:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2012589-2012734:1:exon

LCP2
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: LCP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2014493..2062217)
location: region:2014493-2062217:-1
so has part: feature:2014493-2062217:-1:exon
subclass of: SO_0000010

113878971
type: Gene
SIO_000068: ncbigene

position:2014493:-1
position: 2014493
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2062217:-1
position: 2062217
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2014493-2062217:-1:exon

LCP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: LCP2
product: lymphocyte cytosolic protein 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 34 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 49 samples with support for all annotated introns
transcript id: XM_027520177.1
SIO_010081: LCP2
subclass of: SO_0000673
so part of: LCP2
location: complement(join(2014493..2015794,2017882..2018037,2020250..2020327,2020927..2021018,2024234..2024283,2025734..2025863,2026533..2026545,2028884..2028914,2030279..2030386,2030479..2030498,2030609..2030634,2034226..2034309,2034404..2034470,2037333..2037430,2039403..2039601,2042088..2042125,2042708..2042739,2043099..2043164,2051988..2052034,2057024..2057086,2061878..2062217))
location: region:2014493-2062217:-1
so has part: feature:2061878-2062217:-1:exon
so has part: feature:2057024-2057086:-1:exon
so has part: feature:2051988-2052034:-1:exon
so has part: feature:2043099-2043164:-1:exon
so has part: feature:2042708-2042739:-1:exon
so has part: feature:2042088-2042125:-1:exon
so has part: feature:2039403-2039601:-1:exon
so has part: feature:2037333-2037430:-1:exon
so has part: feature:2034404-2034470:-1:exon
so has part: feature:2034226-2034309:-1:exon
so has part: feature:2030609-2030634:-1:exon
so has part: feature:2030479-2030498:-1:exon
so has part: feature:2030279-2030386:-1:exon
so has part: feature:2028884-2028914:-1:exon
so has part: feature:2026533-2026545:-1:exon
so has part: feature:2025734-2025863:-1:exon
so has part: feature:2024234-2024283:-1:exon
so has part: feature:2020927-2021018:-1:exon
so has part: feature:2020250-2020327:-1:exon
so has part: feature:2017882-2018037:-1:exon
so has part: feature:2014493-2015794:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2061878-2062217:-1:exon

position:2061878:-1
position: 2061878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2057024-2057086:-1:exon

position:2057024:-1
position: 2057024
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2057086:-1
position: 2057086
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2051988-2052034:-1:exon

position:2051988:-1
position: 2051988
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2052034:-1
position: 2052034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2043099-2043164:-1:exon

position:2043099:-1
position: 2043099
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2043164:-1
position: 2043164
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2042708-2042739:-1:exon

position:2042708:-1
position: 2042708
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2042739:-1
position: 2042739
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2042088-2042125:-1:exon

position:2042088:-1
position: 2042088
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2042125:-1
position: 2042125
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2039403-2039601:-1:exon

position:2039403:-1
position: 2039403
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2039601:-1
position: 2039601
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2037333-2037430:-1:exon

position:2037333:-1
position: 2037333
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2037430:-1
position: 2037430
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2034404-2034470:-1:exon

position:2034404:-1
position: 2034404
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2034470:-1
position: 2034470
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2034226-2034309:-1:exon

position:2034226:-1
position: 2034226
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2034309:-1
position: 2034309
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:2030609-2030634:-1:exon

position:2030609:-1
position: 2030609
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2030634:-1
position: 2030634
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:2030479-2030498:-1:exon

position:2030479:-1
position: 2030479
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2030498:-1
position: 2030498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:2030279-2030386:-1:exon

position:2030279:-1
position: 2030279
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2030386:-1
position: 2030386
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:2028884-2028914:-1:exon

position:2028884:-1
position: 2028884
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2028914:-1
position: 2028914
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:2026533-2026545:-1:exon

position:2026533:-1
position: 2026533
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2026545:-1
position: 2026545
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:2025734-2025863:-1:exon

position:2025734:-1
position: 2025734
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2025863:-1
position: 2025863
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:2024234-2024283:-1:exon

position:2024234:-1
position: 2024234
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2024283:-1
position: 2024283
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:2020927-2021018:-1:exon

position:2020927:-1
position: 2020927
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2021018:-1
position: 2021018
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:2020250-2020327:-1:exon

position:2020250:-1
position: 2020250
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2020327:-1
position: 2020327
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:2017882-2018037:-1:exon

position:2017882:-1
position: 2017882
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2018037:-1
position: 2018037
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:2014493-2015794:-1:exon

position:2015794:-1
position: 2015794
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LCP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: LCP2
product: lymphocyte cytosolic protein 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 34 ESTs, 1 long SRA read, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 94 samples with support for all annotated introns
transcript id: XM_027520176.1
SIO_010081: LCP2
subclass of: SO_0000673
so part of: LCP2
location: complement(join(2014493..2015794,2017882..2018037,2020250..2020327,2020927..2021018,2024234..2024283,2025734..2025863,2026533..2026545,2028884..2028914,2030279..2030386,2030479..2030498,2030609..2030634,2034226..2034309,2034404..2034473,2037333..2037430,2039403..2039601,2042088..2042125,2042708..2042739,2043099..2043164,2051988..2052034,2057024..2057086,2061878..2062217))
location: region:2014493-2062217:-1
so has part: feature:2061878-2062217:-1:exon
so has part: feature:2057024-2057086:-1:exon
so has part: feature:2051988-2052034:-1:exon
so has part: feature:2043099-2043164:-1:exon
so has part: feature:2042708-2042739:-1:exon
so has part: feature:2042088-2042125:-1:exon
so has part: feature:2039403-2039601:-1:exon
so has part: feature:2037333-2037430:-1:exon
so has part: feature:2034404-2034473:-1:exon
so has part: feature:2034226-2034309:-1:exon
so has part: feature:2030609-2030634:-1:exon
so has part: feature:2030479-2030498:-1:exon
so has part: feature:2030279-2030386:-1:exon
so has part: feature:2028884-2028914:-1:exon
so has part: feature:2026533-2026545:-1:exon
so has part: feature:2025734-2025863:-1:exon
so has part: feature:2024234-2024283:-1:exon
so has part: feature:2020927-2021018:-1:exon
so has part: feature:2020250-2020327:-1:exon
so has part: feature:2017882-2018037:-1:exon
so has part: feature:2014493-2015794:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2061878-2062217:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2057024-2057086:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2051988-2052034:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2043099-2043164:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2042708-2042739:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2042088-2042125:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2039403-2039601:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2037333-2037430:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2034404-2034473:-1:exon

position:2034473:-1
position: 2034473
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2034226-2034309:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2030609-2030634:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2030479-2030498:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2030279-2030386:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2028884-2028914:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2026533-2026545:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2025734-2025863:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2024234-2024283:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2020927-2021018:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:2020250-2020327:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:2017882-2018037:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:2014493-2015794:-1:exon

LCP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: LCP2
product: lymphocyte cytosolic protein 2, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 34 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
transcript id: XM_027520179.1
SIO_010081: LCP2
subclass of: SO_0000673
so part of: LCP2
location: complement(join(2014493..2015794,2017882..2018037,2020250..2020327,2020927..2021018,2024234..2024283,2025734..2025863,2026533..2026545,2028884..2028914,2030279..2030386,2030479..2030498,2030609..2030634,2034226..2034309,2034404..2034473,2037333..2037430,2039403..2039601,2042088..2042125,2042708..2042739,2043099..2043164,2051125..2051207))
location: region:2014493-2051207:-1
so has part: feature:2051125-2051207:-1:exon
so has part: feature:2043099-2043164:-1:exon
so has part: feature:2042708-2042739:-1:exon
so has part: feature:2042088-2042125:-1:exon
so has part: feature:2039403-2039601:-1:exon
so has part: feature:2037333-2037430:-1:exon
so has part: feature:2034404-2034473:-1:exon
so has part: feature:2034226-2034309:-1:exon
so has part: feature:2030609-2030634:-1:exon
so has part: feature:2030479-2030498:-1:exon
so has part: feature:2030279-2030386:-1:exon
so has part: feature:2028884-2028914:-1:exon
so has part: feature:2026533-2026545:-1:exon
so has part: feature:2025734-2025863:-1:exon
so has part: feature:2024234-2024283:-1:exon
so has part: feature:2020927-2021018:-1:exon
so has part: feature:2020250-2020327:-1:exon
so has part: feature:2017882-2018037:-1:exon
so has part: feature:2014493-2015794:-1:exon

position:2051207:-1
position: 2051207
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2051125-2051207:-1:exon

position:2051125:-1
position: 2051125
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2043099-2043164:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2042708-2042739:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2042088-2042125:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2039403-2039601:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2037333-2037430:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2034404-2034473:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2034226-2034309:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2030609-2030634:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2030479-2030498:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2030279-2030386:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2028884-2028914:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2026533-2026545:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2025734-2025863:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2024234-2024283:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2020927-2021018:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2020250-2020327:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2017882-2018037:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:2014493-2015794:-1:exon

LCP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: LCP2
product: lymphocyte cytosolic protein 2, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 34 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
transcript id: XM_027520178.1
SIO_010081: LCP2
subclass of: SO_0000673
so part of: LCP2
location: complement(join(2014493..2015794,2017882..2018037,2020250..2020327,2020927..2021018,2024234..2024283,2025734..2025863,2026533..2026545,2028884..2028914,2030279..2030386,2030479..2030498,2030609..2030634,2034226..2034309,2034404..2034473,2037333..2037430,2039403..2039601,2042088..2042125,2042708..2042739,2043099..2043164,2043579..2044268))
location: region:2014493-2044268:-1
so has part: feature:2043579-2044268:-1:exon
so has part: feature:2043099-2043164:-1:exon
so has part: feature:2042708-2042739:-1:exon
so has part: feature:2042088-2042125:-1:exon
so has part: feature:2039403-2039601:-1:exon
so has part: feature:2037333-2037430:-1:exon
so has part: feature:2034404-2034473:-1:exon
so has part: feature:2034226-2034309:-1:exon
so has part: feature:2030609-2030634:-1:exon
so has part: feature:2030479-2030498:-1:exon
so has part: feature:2030279-2030386:-1:exon
so has part: feature:2028884-2028914:-1:exon
so has part: feature:2026533-2026545:-1:exon
so has part: feature:2025734-2025863:-1:exon
so has part: feature:2024234-2024283:-1:exon
so has part: feature:2020927-2021018:-1:exon
so has part: feature:2020250-2020327:-1:exon
so has part: feature:2017882-2018037:-1:exon
so has part: feature:2014493-2015794:-1:exon

position:2044268:-1
position: 2044268
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2043579-2044268:-1:exon

position:2043579:-1
position: 2043579
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2043099-2043164:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2042708-2042739:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2042088-2042125:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2039403-2039601:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2037333-2037430:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2034404-2034473:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2034226-2034309:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2030609-2030634:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2030479-2030498:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2030279-2030386:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2028884-2028914:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2026533-2026545:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2025734-2025863:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2024234-2024283:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2020927-2021018:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2020250-2020327:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2017882-2018037:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:2014493-2015794:-1:exon

LCP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: LCP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: lymphocyte cytosolic protein 2 isoform X2
translation: MAFKNVPFRSEVLSWDPNTLADYFKKLNYKDCEKVVRKYDIDGPRFLNLAENDIQKFPKLRVPILSKLSQEINKNEERRSIFTRKPQVQRFPEETESHEEDNGGWSSFEEDDYESPNDDADAEDDGDYESPNEEEEAPLEDDADYEPPPSNDEEALQNSILPAKPLSNPNSMYIDRPATGKVQQPPVPPQRPMPSLPPLPTAGRIHQPLPPPQPNHEEPSRSRNHKTAKLPAPSIDRSTKPALDRSLVPFDREPFTLGRKPMISDKSSVLGGRPPGEHLPKIQKPPLPPATERHDRGSPLPGKKPPVPRHMRGPERRENDEDDVHQRLPPQPSPLPMTSNTFPSRSTKPSPKNSLPLTHSSGAFSESNSNFSQSASLPPYFSQGPGNRPLPRMEGRNFSPVPSKPRSQSPGEEENSLNEDWYVSYVTRTEAEAALRKINQDGTFLVRDSSKKTISNPYVLMVLYKDKVYNIQIRYQEESQVYLLGTGLRGKEDFLSVSDIIDYFRKMPLLLIDGKNRGSRYQCTLTYSAGYP
SIO_010081: LCP2
subclass of: SO_0000673
so part of: LCP2
location: complement(join(2015672..2015794,2017882..2018037,2020250..2020327,2020927..2021018,2024234..2024283,2025734..2025863,2026533..2026545,2028884..2028914,2030279..2030386,2030479..2030498,2030609..2030634,2034226..2034309,2034404..2034470,2037333..2037430,2039403..2039601,2042088..2042125,2042708..2042739,2043099..2043164,2051988..2052034,2057024..2057086,2061878..2061955))
location: region:2015672-2061955:-1
so has part: feature:2061878-2061955:-1:exon
so has part: feature:2057024-2057086:-1:exon
so has part: feature:2051988-2052034:-1:exon
so has part: feature:2043099-2043164:-1:exon
so has part: feature:2042708-2042739:-1:exon
so has part: feature:2042088-2042125:-1:exon
so has part: feature:2039403-2039601:-1:exon
so has part: feature:2037333-2037430:-1:exon
so has part: feature:2034404-2034470:-1:exon
so has part: feature:2034226-2034309:-1:exon
so has part: feature:2030609-2030634:-1:exon
so has part: feature:2030479-2030498:-1:exon
so has part: feature:2030279-2030386:-1:exon
so has part: feature:2028884-2028914:-1:exon
so has part: feature:2026533-2026545:-1:exon
so has part: feature:2025734-2025863:-1:exon
so has part: feature:2024234-2024283:-1:exon
so has part: feature:2020927-2021018:-1:exon
so has part: feature:2020250-2020327:-1:exon
so has part: feature:2017882-2018037:-1:exon
so has part: feature:2015672-2015794:-1:exon

XP_027375978.1
type: Protein
SIO_000068: ncbiprotein

position:2015672:-1
position: 2015672
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2061955:-1
position: 2061955
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2061878-2061955:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2057024-2057086:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2051988-2052034:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2043099-2043164:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2042708-2042739:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2042088-2042125:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2039403-2039601:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2037333-2037430:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2034404-2034470:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2034226-2034309:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2030609-2030634:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2030479-2030498:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2030279-2030386:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2028884-2028914:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2026533-2026545:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2025734-2025863:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2024234-2024283:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2020927-2021018:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:2020250-2020327:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:2017882-2018037:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:2015672-2015794:-1:exon

LCP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: LCP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: lymphocyte cytosolic protein 2 isoform X1
translation: MAFKNVPFRSEVLSWDPNTLADYFKKLNYKDCEKVVRKYDIDGPRFLNLAENDIQKFPKLRVPILSKLSQEINKNEERRSIFTRKPQVQRFPEETESHEEDNGGWSSFEEDDYESPNDDADAEDDGDYESPNEEEEAPLEDDADYEPPPSNDEEALQNSILPAKPLSNPNSMYIDRPATGKVQQPPVPPQRPMPSLPPLPTAGRIHQQPLPPPQPNHEEPSRSRNHKTAKLPAPSIDRSTKPALDRSLVPFDREPFTLGRKPMISDKSSVLGGRPPGEHLPKIQKPPLPPATERHDRGSPLPGKKPPVPRHMRGPERRENDEDDVHQRLPPQPSPLPMTSNTFPSRSTKPSPKNSLPLTHSSGAFSESNSNFSQSASLPPYFSQGPGNRPLPRMEGRNFSPVPSKPRSQSPGEEENSLNEDWYVSYVTRTEAEAALRKINQDGTFLVRDSSKKTISNPYVLMVLYKDKVYNIQIRYQEESQVYLLGTGLRGKEDFLSVSDIIDYFRKMPLLLIDGKNRGSRYQCTLTYSAGYP
SIO_010081: LCP2
subclass of: SO_0000673
so part of: LCP2
location: complement(join(2015672..2015794,2017882..2018037,2020250..2020327,2020927..2021018,2024234..2024283,2025734..2025863,2026533..2026545,2028884..2028914,2030279..2030386,2030479..2030498,2030609..2030634,2034226..2034309,2034404..2034473,2037333..2037430,2039403..2039601,2042088..2042125,2042708..2042739,2043099..2043164,2051988..2052034,2057024..2057086,2061878..2061955))
location: region:2015672-2061955:-1
so has part: feature:2061878-2061955:-1:exon
so has part: feature:2057024-2057086:-1:exon
so has part: feature:2051988-2052034:-1:exon
so has part: feature:2043099-2043164:-1:exon
so has part: feature:2042708-2042739:-1:exon
so has part: feature:2042088-2042125:-1:exon
so has part: feature:2039403-2039601:-1:exon
so has part: feature:2037333-2037430:-1:exon
so has part: feature:2034404-2034473:-1:exon
so has part: feature:2034226-2034309:-1:exon
so has part: feature:2030609-2030634:-1:exon
so has part: feature:2030479-2030498:-1:exon
so has part: feature:2030279-2030386:-1:exon
so has part: feature:2028884-2028914:-1:exon
so has part: feature:2026533-2026545:-1:exon
so has part: feature:2025734-2025863:-1:exon
so has part: feature:2024234-2024283:-1:exon
so has part: feature:2020927-2021018:-1:exon
so has part: feature:2020250-2020327:-1:exon
so has part: feature:2017882-2018037:-1:exon
so has part: feature:2015672-2015794:-1:exon

XP_027375977.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2061878-2061955:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2057024-2057086:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2051988-2052034:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2043099-2043164:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2042708-2042739:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2042088-2042125:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2039403-2039601:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2037333-2037430:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2034404-2034473:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2034226-2034309:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2030609-2030634:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2030479-2030498:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2030279-2030386:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2028884-2028914:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2026533-2026545:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2025734-2025863:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2024234-2024283:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2020927-2021018:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:2020250-2020327:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:2017882-2018037:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:2015672-2015794:-1:exon

LCP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: LCP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: lymphocyte cytosolic protein 2 isoform X4
translation: MLAGARILSKLSQEINKNEERRSIFTRKPQVQRFPEETESHEEDNGGWSSFEEDDYESPNDDADAEDDGDYESPNEEEEAPLEDDADYEPPPSNDEEALQNSILPAKPLSNPNSMYIDRPATGKVQQPPVPPQRPMPSLPPLPTAGRIHQQPLPPPQPNHEEPSRSRNHKTAKLPAPSIDRSTKPALDRSLVPFDREPFTLGRKPMISDKSSVLGGRPPGEHLPKIQKPPLPPATERHDRGSPLPGKKPPVPRHMRGPERRENDEDDVHQRLPPQPSPLPMTSNTFPSRSTKPSPKNSLPLTHSSGAFSESNSNFSQSASLPPYFSQGPGNRPLPRMEGRNFSPVPSKPRSQSPGEEENSLNEDWYVSYVTRTEAEAALRKINQDGTFLVRDSSKKTISNPYVLMVLYKDKVYNIQIRYQEESQVYLLGTGLRGKEDFLSVSDIIDYFRKMPLLLIDGKNRGSRYQCTLTYSAGYP
SIO_010081: LCP2
subclass of: SO_0000673
so part of: LCP2
location: complement(join(2015672..2015794,2017882..2018037,2020250..2020327,2020927..2021018,2024234..2024283,2025734..2025863,2026533..2026545,2028884..2028914,2030279..2030386,2030479..2030498,2030609..2030634,2034226..2034309,2034404..2034473,2037333..2037430,2039403..2039601,2042088..2042125,2042708..2042739,2043099..2043164,2051125..2051141))
location: region:2015672-2051141:-1
so has part: feature:2051125-2051141:-1:exon
so has part: feature:2043099-2043164:-1:exon
so has part: feature:2042708-2042739:-1:exon
so has part: feature:2042088-2042125:-1:exon
so has part: feature:2039403-2039601:-1:exon
so has part: feature:2037333-2037430:-1:exon
so has part: feature:2034404-2034473:-1:exon
so has part: feature:2034226-2034309:-1:exon
so has part: feature:2030609-2030634:-1:exon
so has part: feature:2030479-2030498:-1:exon
so has part: feature:2030279-2030386:-1:exon
so has part: feature:2028884-2028914:-1:exon
so has part: feature:2026533-2026545:-1:exon
so has part: feature:2025734-2025863:-1:exon
so has part: feature:2024234-2024283:-1:exon
so has part: feature:2020927-2021018:-1:exon
so has part: feature:2020250-2020327:-1:exon
so has part: feature:2017882-2018037:-1:exon
so has part: feature:2015672-2015794:-1:exon

XP_027375980.1
type: Protein
SIO_000068: ncbiprotein

position:2051141:-1
position: 2051141
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2051125-2051141:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2043099-2043164:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2042708-2042739:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2042088-2042125:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2039403-2039601:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2037333-2037430:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2034404-2034473:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2034226-2034309:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2030609-2030634:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2030479-2030498:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2030279-2030386:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2028884-2028914:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2026533-2026545:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2025734-2025863:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2024234-2024283:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2020927-2021018:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2020250-2020327:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2017882-2018037:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:2015672-2015794:-1:exon

LCP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: LCP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: lymphocyte cytosolic protein 2 isoform X3
translation: MGNTSPSVYKNPCHQGGNRGWKEISGPRSALKLLSRVLQRAADSSRSQRILSKLSQEINKNEERRSIFTRKPQVQRFPEETESHEEDNGGWSSFEEDDYESPNDDADAEDDGDYESPNEEEEAPLEDDADYEPPPSNDEEALQNSILPAKPLSNPNSMYIDRPATGKVQQPPVPPQRPMPSLPPLPTAGRIHQQPLPPPQPNHEEPSRSRNHKTAKLPAPSIDRSTKPALDRSLVPFDREPFTLGRKPMISDKSSVLGGRPPGEHLPKIQKPPLPPATERHDRGSPLPGKKPPVPRHMRGPERRENDEDDVHQRLPPQPSPLPMTSNTFPSRSTKPSPKNSLPLTHSSGAFSESNSNFSQSASLPPYFSQGPGNRPLPRMEGRNFSPVPSKPRSQSPGEEENSLNEDWYVSYVTRTEAEAALRKINQDGTFLVRDSSKKTISNPYVLMVLYKDKVYNIQIRYQEESQVYLLGTGLRGKEDFLSVSDIIDYFRKMPLLLIDGKNRGSRYQCTLTYSAGYP
SIO_010081: LCP2
subclass of: SO_0000673
so part of: LCP2
location: complement(join(2015672..2015794,2017882..2018037,2020250..2020327,2020927..2021018,2024234..2024283,2025734..2025863,2026533..2026545,2028884..2028914,2030279..2030386,2030479..2030498,2030609..2030634,2034226..2034309,2034404..2034473,2037333..2037430,2039403..2039601,2042088..2042125,2042708..2042739,2043099..2043164,2043579..2043724))
location: region:2015672-2043724:-1
so has part: feature:2043579-2043724:-1:exon
so has part: feature:2043099-2043164:-1:exon
so has part: feature:2042708-2042739:-1:exon
so has part: feature:2042088-2042125:-1:exon
so has part: feature:2039403-2039601:-1:exon
so has part: feature:2037333-2037430:-1:exon
so has part: feature:2034404-2034473:-1:exon
so has part: feature:2034226-2034309:-1:exon
so has part: feature:2030609-2030634:-1:exon
so has part: feature:2030479-2030498:-1:exon
so has part: feature:2030279-2030386:-1:exon
so has part: feature:2028884-2028914:-1:exon
so has part: feature:2026533-2026545:-1:exon
so has part: feature:2025734-2025863:-1:exon
so has part: feature:2024234-2024283:-1:exon
so has part: feature:2020927-2021018:-1:exon
so has part: feature:2020250-2020327:-1:exon
so has part: feature:2017882-2018037:-1:exon
so has part: feature:2015672-2015794:-1:exon

XP_027375979.1
type: Protein
SIO_000068: ncbiprotein

position:2043724:-1
position: 2043724
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2043579-2043724:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2043099-2043164:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2042708-2042739:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2042088-2042125:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2039403-2039601:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2037333-2037430:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2034404-2034473:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2034226-2034309:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2030609-2030634:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2030479-2030498:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2030279-2030386:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2028884-2028914:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2026533-2026545:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2025734-2025863:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2024234-2024283:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2020927-2021018:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2020250-2020327:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2017882-2018037:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:2015672-2015794:-1:exon

KCNIP1
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: KCNIP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2117468..2524640
location: region:2117468-2524640:1
so has part: feature:2117468-2524640:1:exon
subclass of: SO_0000010

113878871
type: Gene
SIO_000068: ncbigene

position:2117468:1
position: 2117468
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2524640:1
position: 2524640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2117468-2524640:1:exon

KCNIP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: KCNIP1
product: potassium voltage-gated channel interacting protein 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 ESTs, 19 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
transcript id: XM_027520005.1
SIO_010081: KCNIP1
subclass of: SO_0000673
so part of: KCNIP1
location: join(2117468..2117859,2507612..2507736,2508491..2508560,2510035..2510105,2510811..2510918,2518524..2518628,2520202..2520264,2523801..2524640)
location: region:2117468-2524640:1
so has part: feature:2117468-2117859:1:exon
so has part: feature:2507612-2507736:1:exon
so has part: feature:2508491-2508560:1:exon
so has part: feature:2510035-2510105:1:exon
so has part: feature:2510811-2510918:1:exon
so has part: feature:2518524-2518628:1:exon
so has part: feature:2520202-2520264:1:exon
so has part: feature:2523801-2524640:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2117468-2117859:1:exon

position:2117859:1
position: 2117859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2507612-2507736:1:exon

position:2507612:1
position: 2507612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2507736:1
position: 2507736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2508491-2508560:1:exon

position:2508491:1
position: 2508491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2508560:1
position: 2508560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2510035-2510105:1:exon

position:2510035:1
position: 2510035
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2510105:1
position: 2510105
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2510811-2510918:1:exon

position:2510811:1
position: 2510811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2510918:1
position: 2510918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2518524-2518628:1:exon

position:2518524:1
position: 2518524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2518628:1
position: 2518628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2520202-2520264:1:exon

position:2520202:1
position: 2520202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2520264:1
position: 2520264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2523801-2524640:1:exon

position:2523801:1
position: 2523801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

KCNIP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: KCNIP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: Kv channel-interacting protein 1 isoform X1
translation: MQKPDSLQRQLCCSWSLWGASISQDPSRQAPSSRARKVGASLLGADNTTCLSSATMSGCSKRCKLGFVKFAQTIFKLITGTLSKDKIEDELEMTMVCHRPEGLEQLEAQTNFTKRELQVLYRGFKNECPSGVVNEETFKQIYAQFFPHGDASMYAHYLFHAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDIFFQKMDKNKDGIVTLDEFLESCQEDDNIMRSLQLFQNVM
SIO_010081: KCNIP1
subclass of: SO_0000673
so part of: KCNIP1
location: join(2117607..2117859,2507612..2507736,2508491..2508560,2510035..2510105,2510811..2510918,2518524..2518628,2520202..2520264,2523801..2523848)
location: region:2117607-2523848:1
so has part: feature:2117607-2117859:1:exon
so has part: feature:2507612-2507736:1:exon
so has part: feature:2508491-2508560:1:exon
so has part: feature:2510035-2510105:1:exon
so has part: feature:2510811-2510918:1:exon
so has part: feature:2518524-2518628:1:exon
so has part: feature:2520202-2520264:1:exon
so has part: feature:2523801-2523848:1:exon

XP_027375806.1
type: Protein
SIO_000068: ncbiprotein

position:2117607:1
position: 2117607
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2523848:1
position: 2523848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2117607-2117859:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2507612-2507736:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2508491-2508560:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2510035-2510105:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2510811-2510918:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2518524-2518628:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2520202-2520264:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2523801-2523848:1:exon

KCNMB1
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: KCNMB1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2138573..2152421)
location: region:2138573-2152421:-1
so has part: feature:2138573-2152421:-1:exon
subclass of: SO_0000010

113878872
type: Gene
SIO_000068: ncbigene

position:2138573:-1
position: 2138573
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2152421:-1
position: 2152421
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2138573-2152421:-1:exon

KCNMB1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: KCNMB1
product: potassium calcium-activated channel subfamily M regulatory beta subunit 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 16 ESTs, 1 long SRA read, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 82 samples with support for all annotated introns
transcript id: XM_027520009.1
SIO_010081: KCNMB1
subclass of: SO_0000673
so part of: KCNMB1
location: complement(join(2138573..2141374,2146791..2146962,2148308..2148465,2152339..2152421))
location: region:2138573-2152421:-1
so has part: feature:2152339-2152421:-1:exon
so has part: feature:2148308-2148465:-1:exon
so has part: feature:2146791-2146962:-1:exon
so has part: feature:2138573-2141374:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2152339-2152421:-1:exon

position:2152339:-1
position: 2152339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2148308-2148465:-1:exon

position:2148308:-1
position: 2148308
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2148465:-1
position: 2148465
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2146791-2146962:-1:exon

position:2146791:-1
position: 2146791
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2146962:-1
position: 2146962
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2138573-2141374:-1:exon

position:2141374:-1
position: 2141374
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

KCNMB1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: KCNMB1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: calcium-activated potassium channel subunit beta-1
translation: MGKKLVMAQRRGETRALCLGVAMVVGAVITYYILGTTVLPLYQKSVWTQESTCHLIETNIRDQEELEGKRVPQYPCLWVNVSSVGRWAVLYHTEDTRDQNHQCSYIPSSLDNYQVARADVEKVRARFHENQDFFCFSTTRENETSVLYRRLYGPQSLLFSLFWPTFLLTGGLLIIVMVKINQSLSILAAQR
SIO_010081: KCNMB1
subclass of: SO_0000673
so part of: KCNMB1
location: complement(join(2141105..2141374,2146791..2146962,2148308..2148441))
location: region:2141105-2148441:-1
so has part: feature:2148308-2148441:-1:exon
so has part: feature:2146791-2146962:-1:exon
so has part: feature:2141105-2141374:-1:exon

XP_027375810.1
type: Protein
SIO_000068: ncbiprotein

position:2141105:-1
position: 2141105
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2148441:-1
position: 2148441
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2148308-2148441:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2146791-2146962:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2141105-2141374:-1:exon

LOC113878874
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: LOC113878874
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2185575..2216248)
location: region:2185575-2216248:-1
so has part: feature:2185575-2216248:-1:exon
subclass of: SO_0000011

113878874
type: Gene
SIO_000068: ncbigene

position:2185575:-1
position: 2185575
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2216248:-1
position: 2216248
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2185575-2216248:-1:exon

LOC113878874
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 30522
nc RNA class: lncRNA
gene: LOC113878874
product: uncharacterized LOC113878874
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_003507153.1
SIO_010081: LOC113878874
subclass of: SO_0000673
so part of: LOC113878874
location: complement(join(2185575..2186666,2216132..2216248))
location: region:2185575-2216248:-1
so has part: feature:2216132-2216248:-1:exon
so has part: feature:2185575-2186666:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2216132-2216248:-1:exon

position:2216132:-1
position: 2216132
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2185575-2186666:-1:exon

position:2186666:-1
position: 2186666
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

KCNIP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: KCNIP1
product: potassium voltage-gated channel interacting protein 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 ESTs, 26 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_027520006.1
SIO_010081: KCNIP1
subclass of: SO_0000673
so part of: KCNIP1
location: join(2263210..2263801,2502912..2502944,2507612..2507736,2508491..2508560,2510035..2510105,2510811..2510918,2518524..2518628,2520202..2520264,2523801..2524640)
location: region:2263210-2524640:1
so has part: feature:2263210-2263801:1:exon
so has part: feature:2502912-2502944:1:exon
so has part: feature:2507612-2507736:1:exon
so has part: feature:2508491-2508560:1:exon
so has part: feature:2510035-2510105:1:exon
so has part: feature:2510811-2510918:1:exon
so has part: feature:2518524-2518628:1:exon
so has part: feature:2520202-2520264:1:exon
so has part: feature:2523801-2524640:1:exon

position:2263210:1
position: 2263210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2263210-2263801:1:exon

position:2263801:1
position: 2263801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2502912-2502944:1:exon

position:2502912:1
position: 2502912
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2502944:1
position: 2502944
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2507612-2507736:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2508491-2508560:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2510035-2510105:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2510811-2510918:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2518524-2518628:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2520202-2520264:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2523801-2524640:1:exon

KCNIP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: KCNIP1
product: potassium voltage-gated channel interacting protein 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 9 ESTs, 22 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 85 samples with support for all annotated introns
transcript id: XM_027520007.1
SIO_010081: KCNIP1
subclass of: SO_0000673
so part of: KCNIP1
location: join(2263211..2263801,2507612..2507736,2508491..2508560,2510035..2510105,2510811..2510918,2518524..2518628,2520202..2520264,2523801..2524640)
location: region:2263211-2524640:1
so has part: feature:2263211-2263801:1:exon
so has part: feature:2507612-2507736:1:exon
so has part: feature:2508491-2508560:1:exon
so has part: feature:2510035-2510105:1:exon
so has part: feature:2510811-2510918:1:exon
so has part: feature:2518524-2518628:1:exon
so has part: feature:2520202-2520264:1:exon
so has part: feature:2523801-2524640:1:exon

position:2263211:1
position: 2263211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2263211-2263801:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2507612-2507736:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2508491-2508560:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2510035-2510105:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2510811-2510918:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2518524-2518628:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2520202-2520264:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2523801-2524640:1:exon

KCNIP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: KCNIP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: Kv channel-interacting protein 1 isoform X2
translation: MGAVMGTFSSLQTKQRRPSKDIAWWYYQYQRDKIEDELEMTMVCHRPEGLEQLEAQTNFTKRELQVLYRGFKNECPSGVVNEETFKQIYAQFFPHGDASMYAHYLFHAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDIFFQKMDKNKDGIVTLDEFLESCQEDDNIMRSLQLFQNVM
SIO_010081: KCNIP1
subclass of: SO_0000673
so part of: KCNIP1
location: join(2263741..2263801,2502912..2502944,2507612..2507736,2508491..2508560,2510035..2510105,2510811..2510918,2518524..2518628,2520202..2520264,2523801..2523848)
location: region:2263741-2523848:1
so has part: feature:2263741-2263801:1:exon
so has part: feature:2502912-2502944:1:exon
so has part: feature:2507612-2507736:1:exon
so has part: feature:2508491-2508560:1:exon
so has part: feature:2510035-2510105:1:exon
so has part: feature:2510811-2510918:1:exon
so has part: feature:2518524-2518628:1:exon
so has part: feature:2520202-2520264:1:exon
so has part: feature:2523801-2523848:1:exon

XP_027375807.1
type: Protein
SIO_000068: ncbiprotein

position:2263741:1
position: 2263741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2263741-2263801:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2502912-2502944:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2507612-2507736:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2508491-2508560:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2510035-2510105:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2510811-2510918:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2518524-2518628:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2520202-2520264:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2523801-2523848:1:exon

KCNIP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: KCNIP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: Kv channel-interacting protein 1 isoform X3
translation: MGAVMGTFSSLQTKQRRPSKDKIEDELEMTMVCHRPEGLEQLEAQTNFTKRELQVLYRGFKNECPSGVVNEETFKQIYAQFFPHGDASMYAHYLFHAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDIFFQKMDKNKDGIVTLDEFLESCQEDDNIMRSLQLFQNVM
SIO_010081: KCNIP1
subclass of: SO_0000673
so part of: KCNIP1
location: join(2263741..2263801,2507612..2507736,2508491..2508560,2510035..2510105,2510811..2510918,2518524..2518628,2520202..2520264,2523801..2523848)
location: region:2263741-2523848:1
so has part: feature:2263741-2263801:1:exon
so has part: feature:2507612-2507736:1:exon
so has part: feature:2508491-2508560:1:exon
so has part: feature:2510035-2510105:1:exon
so has part: feature:2510811-2510918:1:exon
so has part: feature:2518524-2518628:1:exon
so has part: feature:2520202-2520264:1:exon
so has part: feature:2523801-2523848:1:exon

XP_027375808.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2263741-2263801:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2507612-2507736:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2508491-2508560:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2510035-2510105:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2510811-2510918:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2518524-2518628:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2520202-2520264:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2523801-2523848:1:exon

LOC113878873
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: LOC113878873
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2285801..2337722)
location: region:2285801-2337722:-1
so has part: feature:2285801-2337722:-1:exon
subclass of: SO_0000011

113878873
type: Gene
SIO_000068: ncbigene

position:2285801:-1
position: 2285801
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2337722:-1
position: 2337722
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2285801-2337722:-1:exon

LOC113878873
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 30522
nc RNA class: lncRNA
gene: LOC113878873
product: uncharacterized LOC113878873
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XR_003507152.1
SIO_010081: LOC113878873
subclass of: SO_0000673
so part of: LOC113878873
location: complement(join(2285801..2286555,2289241..2289728,2337494..2337722))
location: region:2285801-2337722:-1
so has part: feature:2337494-2337722:-1:exon
so has part: feature:2289241-2289728:-1:exon
so has part: feature:2285801-2286555:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2337494-2337722:-1:exon

position:2337494:-1
position: 2337494
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2289241-2289728:-1:exon

position:2289241:-1
position: 2289241
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2289728:-1
position: 2289728
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2285801-2286555:-1:exon

position:2286555:-1
position: 2286555
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

KCNIP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: KCNIP1
product: potassium voltage-gated channel interacting protein 1, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 ESTs, 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
transcript id: XM_027520008.1
SIO_010081: KCNIP1
subclass of: SO_0000673
so part of: KCNIP1
location: join(2315063..2315189,2507612..2507736,2508491..2508560,2510035..2510105,2510811..2510918,2518524..2518628,2520202..2520264,2523801..2524640)
location: region:2315063-2524640:1
so has part: feature:2315063-2315189:1:exon
so has part: feature:2507612-2507736:1:exon
so has part: feature:2508491-2508560:1:exon
so has part: feature:2510035-2510105:1:exon
so has part: feature:2510811-2510918:1:exon
so has part: feature:2518524-2518628:1:exon
so has part: feature:2520202-2520264:1:exon
so has part: feature:2523801-2524640:1:exon

position:2315063:1
position: 2315063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2315063-2315189:1:exon

position:2315189:1
position: 2315189
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2507612-2507736:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2508491-2508560:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2510035-2510105:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2510811-2510918:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2518524-2518628:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2520202-2520264:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2523801-2524640:1:exon

KCNIP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: KCNIP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: Kv channel-interacting protein 1 isoform X4
translation: MTMVCHRPEGLEQLEAQTNFTKRELQVLYRGFKNECPSGVVNEETFKQIYAQFFPHGDASMYAHYLFHAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDIFFQKMDKNKDGIVTLDEFLESCQEDDNIMRSLQLFQNVM
SIO_010081: KCNIP1
subclass of: SO_0000673
so part of: KCNIP1
location: join(2507635..2507736,2508491..2508560,2510035..2510105,2510811..2510918,2518524..2518628,2520202..2520264,2523801..2523848)
location: region:2507635-2523848:1
so has part: feature:2507635-2507736:1:exon
so has part: feature:2508491-2508560:1:exon
so has part: feature:2510035-2510105:1:exon
so has part: feature:2510811-2510918:1:exon
so has part: feature:2518524-2518628:1:exon
so has part: feature:2520202-2520264:1:exon
so has part: feature:2523801-2523848:1:exon

XP_027375809.1
type: Protein
SIO_000068: ncbiprotein

position:2507635:1
position: 2507635
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2507635-2507736:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2508491-2508560:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2510035-2510105:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2510811-2510918:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2518524-2518628:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2520202-2520264:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2523801-2523848:1:exon

GABRP
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: GABRP
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2562852..2589563
location: region:2562852-2589563:1
so has part: feature:2562852-2589563:1:exon
subclass of: SO_0000010

113879107
type: Gene
SIO_000068: ncbigene

position:2562852:1
position: 2562852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2589563:1
position: 2589563
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2562852-2589563:1:exon

GABRP
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: GABRP
product: gamma-aminobutyric acid type A receptor pi subunit, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 7 ESTs, 1 long SRA read, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 46 samples with support for all annotated introns
transcript id: XM_027520373.1
SIO_010081: GABRP
subclass of: SO_0000673
so part of: GABRP
location: join(2562852..2563022,2568337..2568433,2569104..2569222,2573581..2573648,2574386..2574603,2576248..2576330,2579439..2579576,2580037..2580189,2580633..2580820,2587649..2589563)
location: region:2562852-2589563:1
so has part: feature:2562852-2563022:1:exon
so has part: feature:2568337-2568433:1:exon
so has part: feature:2569104-2569222:1:exon
so has part: feature:2573581-2573648:1:exon
so has part: feature:2574386-2574603:1:exon
so has part: feature:2576248-2576330:1:exon
so has part: feature:2579439-2579576:1:exon
so has part: feature:2580037-2580189:1:exon
so has part: feature:2580633-2580820:1:exon
so has part: feature:2587649-2589563:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2562852-2563022:1:exon

position:2563022:1
position: 2563022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2568337-2568433:1:exon

position:2568337:1
position: 2568337
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2568433:1
position: 2568433
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2569104-2569222:1:exon

position:2569104:1
position: 2569104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2569222:1
position: 2569222
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2573581-2573648:1:exon

position:2573581:1
position: 2573581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2573648:1
position: 2573648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2574386-2574603:1:exon

position:2574386:1
position: 2574386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2574603:1
position: 2574603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2576248-2576330:1:exon

position:2576248:1
position: 2576248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2576330:1
position: 2576330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2579439-2579576:1:exon

position:2579439:1
position: 2579439
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2579576:1
position: 2579576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2580037-2580189:1:exon

position:2580037:1
position: 2580037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2580189:1
position: 2580189
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2580633-2580820:1:exon

position:2580633:1
position: 2580633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2580820:1
position: 2580820
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2587649-2589563:1:exon

position:2587649:1
position: 2587649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

GABRP
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 30522
gene: GABRP
product: gamma-aminobutyric acid type A receptor pi subunit, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns
transcript id: XR_003507203.1
SIO_010081: GABRP
so part of: GABRP
location: join(2562852..2563022,2568337..2568433,2569104..2569222,2573581..2573648,2574386..2574603,2576248..2576330,2579439..2579576,2580037..2580189,2580633..2580820,2587649..2588004,2589321..2589563)
location: region:2562852-2589563:1
so has part: feature:2562852-2563022:1:exon
so has part: feature:2568337-2568433:1:exon
so has part: feature:2569104-2569222:1:exon
so has part: feature:2573581-2573648:1:exon
so has part: feature:2574386-2574603:1:exon
so has part: feature:2576248-2576330:1:exon
so has part: feature:2579439-2579576:1:exon
so has part: feature:2580037-2580189:1:exon
so has part: feature:2580633-2580820:1:exon
so has part: feature:2587649-2588004:1:exon
so has part: feature:2589321-2589563:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2562852-2563022:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2568337-2568433:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2569104-2569222:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2573581-2573648:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2574386-2574603:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2576248-2576330:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2579439-2579576:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2580037-2580189:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2580633-2580820:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2587649-2588004:1:exon

position:2588004:1
position: 2588004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:2589321-2589563:1:exon

position:2589321:1
position: 2589321
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

GABRP
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: GABRP
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: gamma-aminobutyric acid receptor subunit pi
translation: MKRSLHLTFVCLSLFSARMCVQGNQFNIEVSRSNKLSLPGFENLTAGYNKFLRPNFGGEPVQIALTLDIASISSISESNMDYTATIYLRQRWTDQRLVFEGNKSFTLDARLVEFLWVPDTYIVESKKSFLHEVTVGNRLIRLFSNGTVLYALRITTTVACNMDLSKYPMDTQTCKLQLESWGYDGNDVEFSWLRGNDSVRGLENLRLAQYTIQQYFTSVTRSQQETGNYTRLVLQFELQRNVLYFILETYVPSTFLVVLSWVSFWISLDSVPARTCIGVTTVLSMTTLMIGSRTSLPNTNCFIKAIDVYLGICFSFVFGALLEYAVAHYSSLQQMAAKDRGKAKEVEEVNITNIINSSISSFKRKISFASIEISGDNVDYSDLTMKTSDKVKFVFRDKLGRIVDYFTIQNPSNVDRYSKLLFPLIFMLANVFYWAYYMYF
SIO_010081: GABRP
subclass of: SO_0000673
so part of: GABRP
location: join(2568381..2568433,2569104..2569222,2573581..2573648,2574386..2574603,2576248..2576330,2579439..2579576,2580037..2580189,2580633..2580820,2587649..2587951)
location: region:2568381-2587951:1
so has part: feature:2568381-2568433:1:exon
so has part: feature:2569104-2569222:1:exon
so has part: feature:2573581-2573648:1:exon
so has part: feature:2574386-2574603:1:exon
so has part: feature:2576248-2576330:1:exon
so has part: feature:2579439-2579576:1:exon
so has part: feature:2580037-2580189:1:exon
so has part: feature:2580633-2580820:1:exon
so has part: feature:2587649-2587951:1:exon

XP_027376174.1
type: Protein
SIO_000068: ncbiprotein

position:2568381:1
position: 2568381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2587951:1
position: 2587951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2568381-2568433:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2569104-2569222:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2573581-2573648:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2574386-2574603:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2576248-2576330:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2579439-2579576:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2580037-2580189:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2580633-2580820:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2587649-2587951:1:exon

RANBP17
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: RANBP17
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2647866..3023798
location: region:2647866-3023798:1
so has part: feature:2647866-3023798:1:exon
subclass of: SO_0000010

113879261
type: Gene
SIO_000068: ncbigene

position:2647866:1
position: 2647866
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3023798:1
position: 3023798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2647866-3023798:1:exon

RANBP17
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: RANBP17
product: RAN binding protein 17, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_027520587.1
SIO_010081: RANBP17
subclass of: SO_0000673
so part of: RANBP17
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urn:…
SIO_000300: 6
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urn:…
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urn:…
SIO_000300: 9
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urn:…
SIO_000300: 11
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SIO_000300: 12
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urn:…
SIO_000300: 13
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urn:…
SIO_000300: 16
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urn:…
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urn:…
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urn:…
SIO_000300: 20
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urn:…
SIO_000300: 21
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SIO_000300: 22
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urn:…
SIO_000300: 23
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SIO_000300: 24
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SIO_000300: 25
SIO_000628: feature:3019311-3019377:1:exon

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reference: sequence
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RANBP17
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 30522
gene: RANBP17
product: RAN binding protein 17, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_003507255.1
SIO_010081: RANBP17
so part of: RANBP17
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location: region:2647867-3023798:1
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position:2647867:1
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reference: sequence
type: ForwardStrandPosition
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urn:…
SIO_000300: 1
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SIO_000628: feature:2689142-2689215:1:exon

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SIO_000628: feature:2692886-2693032:1:exon

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SIO_000628: feature:2693552-2693724:1:exon

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SIO_000628: feature:2695932-2696125:1:exon

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SIO_000628: feature:2738330-2738435:1:exon

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SIO_000628: feature:2758673-2758808:1:exon

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SIO_000628: feature:2904269-2904328:1:exon

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SIO_000628: feature:2912729-2912802:1:exon

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SIO_000628: feature:2913826-2913906:1:exon

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SIO_000628: feature:2923780-2923843:1:exon

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SIO_000628: feature:2923936-2924044:1:exon

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SIO_000300: 20
SIO_000628: feature:2941252-2941355:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:2947027-2947115:1:exon

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SIO_000300: 22
SIO_000628: feature:2956766-2956873:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:2959017-2959099:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:2970836-2971050:1:exon

position:2970836:1
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type: ForwardStrandPosition
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position:2971050:1
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reference: sequence
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urn:…
SIO_000300: 25
SIO_000628: feature:2974944-2975082:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:3019311-3019409:1:exon

position:3019409:1
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reference: sequence
type: ForwardStrandPosition
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urn:…
SIO_000300: 27
SIO_000628: feature:3021280-3021407:1:exon

position:3021280:1
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reference: sequence
type: ForwardStrandPosition
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position:3021407:1
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reference: sequence
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urn:…
SIO_000300: 28
SIO_000628: feature:3023381-3023798:1:exon

position:3023381:1
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reference: sequence
type: ForwardStrandPosition
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RANBP17
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: RANBP17
product: RAN binding protein 17, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_027520586.1
SIO_010081: RANBP17
subclass of: SO_0000673
so part of: RANBP17
location: join(2647867..2648034,2662102..2662248,2665755..2665845,2674456..2674622,2679158..2679223,2684929..2685033,2685811..2685976,2689142..2689215,2691413..2691532,2692886..2693032,2693552..2693724,2695932..2696125,2738330..2738435,2758673..2758808,2904269..2904328,2912729..2912802,2913826..2913906,2923780..2923843,2923936..2924044,2941252..2941355,2947027..2947115,2956766..2956873,2959017..2959099,2974944..2975082,2992088..2992176)
location: region:2647867-2992176:1
so has part: feature:2647867-2648034:1:exon
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position:2992176:1
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reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2647867-2648034:1:exon

urn:…
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urn:…
SIO_000300: 3
SIO_000628: feature:2665755-2665845:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2674456-2674622:1:exon

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SIO_000300: 7
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urn:…
SIO_000300: 8
SIO_000628: feature:2689142-2689215:1:exon

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SIO_000628: feature:2691413-2691532:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2692886-2693032:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2693552-2693724:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2695932-2696125:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2738330-2738435:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2758673-2758808:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2904269-2904328:1:exon

urn:…
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SIO_000628: feature:2912729-2912802:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2913826-2913906:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2923780-2923843:1:exon

urn:…
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SIO_000628: feature:2923936-2924044:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:2941252-2941355:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:2947027-2947115:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:2956766-2956873:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:2959017-2959099:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:2974944-2975082:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:2992088-2992176:1:exon

position:2992088:1
position: 2992088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

RANBP17
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: RANBP17
product: RAN binding protein 17, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 1 long SRA read, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_027520583.1
SIO_010081: RANBP17
subclass of: SO_0000673
so part of: RANBP17
location: join(2647868..2648034,2662102..2662248,2665755..2665845,2674456..2674622,2679158..2679223,2684929..2685033,2685811..2685976,2689142..2689215,2691413..2691532,2692886..2693032,2693552..2693724,2695932..2696125,2738330..2738435,2758673..2758808,2904269..2904328,2912729..2912802,2913826..2913906,2923780..2923843,2923936..2924044,2941252..2941355,2947027..2947115,2956766..2956873,2959017..2959099,2970836..2971050,2974944..2975082,2992088..2992254,3019311..3019409,3021280..3021407,3023381..3023798)
location: region:2647868-3023798:1
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so has part: feature:2904269-2904328:1:exon
so has part: feature:2912729-2912802:1:exon
so has part: feature:2913826-2913906:1:exon
so has part: feature:2923780-2923843:1:exon
so has part: feature:2923936-2924044:1:exon
so has part: feature:2941252-2941355:1:exon
so has part: feature:2947027-2947115:1:exon
so has part: feature:2956766-2956873:1:exon
so has part: feature:2959017-2959099:1:exon
so has part: feature:2970836-2971050:1:exon
so has part: feature:2974944-2975082:1:exon
so has part: feature:2992088-2992254:1:exon
so has part: feature:3019311-3019409:1:exon
so has part: feature:3021280-3021407:1:exon
so has part: feature:3023381-3023798:1:exon

position:2647868:1
position: 2647868
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2647868-2648034:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2662102-2662248:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2665755-2665845:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2674456-2674622:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2679158-2679223:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2684929-2685033:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2685811-2685976:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2689142-2689215:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2691413-2691532:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2692886-2693032:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2693552-2693724:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2695932-2696125:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2738330-2738435:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2758673-2758808:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2904269-2904328:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2912729-2912802:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2913826-2913906:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2923780-2923843:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:2923936-2924044:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:2941252-2941355:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:2947027-2947115:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:2956766-2956873:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:2959017-2959099:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:2970836-2971050:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:2974944-2975082:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:2992088-2992254:1:exon

position:2992254:1
position: 2992254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:3019311-3019409:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:3021280-3021407:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:3023381-3023798:1:exon

RANBP17
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: RANBP17
product: RAN binding protein 17, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 2 long SRA reads, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 55 samples with support for all annotated introns
transcript id: XM_027520584.1
SIO_010081: RANBP17
subclass of: SO_0000673
so part of: RANBP17
location: join(2647869..2648034,2662102..2662248,2665755..2665845,2674456..2674622,2679158..2679223,2684929..2685033,2685811..2685976,2689142..2689215,2691413..2691532,2692886..2693032,2693552..2693724,2695932..2696125,2738330..2738435,2758673..2758808,2912729..2912802,2913826..2913906,2923780..2923843,2923936..2924044,2941252..2941355,2947027..2947115,2956766..2956873,2959017..2959099,2970836..2971050,2974944..2975082,2992088..2992254,3019311..3019409,3021280..3021407,3023381..3023798)
location: region:2647869-3023798:1
so has part: feature:2647869-2648034:1:exon
so has part: feature:2662102-2662248:1:exon
so has part: feature:2665755-2665845:1:exon
so has part: feature:2674456-2674622:1:exon
so has part: feature:2679158-2679223:1:exon
so has part: feature:2684929-2685033:1:exon
so has part: feature:2685811-2685976:1:exon
so has part: feature:2689142-2689215:1:exon
so has part: feature:2691413-2691532:1:exon
so has part: feature:2692886-2693032:1:exon
so has part: feature:2693552-2693724:1:exon
so has part: feature:2695932-2696125:1:exon
so has part: feature:2738330-2738435:1:exon
so has part: feature:2758673-2758808:1:exon
so has part: feature:2912729-2912802:1:exon
so has part: feature:2913826-2913906:1:exon
so has part: feature:2923780-2923843:1:exon
so has part: feature:2923936-2924044:1:exon
so has part: feature:2941252-2941355:1:exon
so has part: feature:2947027-2947115:1:exon
so has part: feature:2956766-2956873:1:exon
so has part: feature:2959017-2959099:1:exon
so has part: feature:2970836-2971050:1:exon
so has part: feature:2974944-2975082:1:exon
so has part: feature:2992088-2992254:1:exon
so has part: feature:3019311-3019409:1:exon
so has part: feature:3021280-3021407:1:exon
so has part: feature:3023381-3023798:1:exon

position:2647869:1
position: 2647869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2647869-2648034:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2662102-2662248:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2665755-2665845:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2674456-2674622:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2679158-2679223:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2684929-2685033:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2685811-2685976:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2689142-2689215:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2691413-2691532:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2692886-2693032:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2693552-2693724:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2695932-2696125:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2738330-2738435:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2758673-2758808:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2912729-2912802:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2913826-2913906:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2923780-2923843:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2923936-2924044:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:2941252-2941355:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:2947027-2947115:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:2956766-2956873:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:2959017-2959099:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:2970836-2971050:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:2974944-2975082:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:2992088-2992254:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:3019311-3019409:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:3021280-3021407:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:3023381-3023798:1:exon

RANBP17
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: RANBP17
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ran-binding protein 17 isoform X1
translation: MALHFQSLAELEALCTHLYIGTDLTQRIEAEKALLELIDSPECLSKCQLLLEQGTTSYAQLLAATCLSKLVSRVSPLPVEQRIDIRNYILNYVASQPKLAPFVIQALIQVIAKITKSGWFEVQKDRFVFREIIADVKTFLQGAMEHCIIGVIILSELTQEMNLVDYSRPSAKHRKIATSFRDTSLKDILVLACSLLKEILAKPLNLQDQDQQNLVMQVLKLVLNCLNFDFIGSSADESADDLCTVQIPTTWRAIFLEPETLDLFFNLYHSLPPLLSQLALSCLVQFASTRRSLFSSPERAKYLGNLIKGVKRILENPQGLSDPGNYHEFCRFLARLKTNYQLGELVMVKEYPEVIRLIANFTITSLQHWEFAPNSVHYLLTLWQRMVASVPFVKSTEPHLLDTYAPEITKAFITSRLESVAVVVRDNLDDPLDDTTTVFQQLEQLCTVSRCEYEKTCTLLVQLFDQNAQNYQKLLHSASRVTVDMAIQEGRLAWLVYLVGTVVGGRLTYTSTDEHDAMDGELSCRVFQLISLMDTGLPQCSNEKIELAILWFLDQFRKTYVGDQLQRTSKVVRLRSDVSRVPEKAWKVVKVYARMSEVLGITDDNHVLETFMTKIVTNLKYWGRCEPVISRTLQFLNDLSVGYILLKKLVKIDAVKFMLKNHTSEHFPFLGISGSYSLSDFRCRTAFYTALTRLLMVDLGEDEDEFENFMLPLTVSFETVLQIFNNNFKQEDVKRMLIGLARDLRGIAFALNTKTSYTMLFDWMYPTYLPILQRAIEQWYGEPACTTPILKLMAELMQNRSQRLNFDVSSPNGILLFREASKMICTYGTQILSLGSLSKDQIYPMKLKGISICYSALKSALCGNYVSFGVFKLYGDNHFDNVLQAFVKMLLSVSHSDLLQYRKLSQSYYPLLECLTQDHMSFITSLDPPVLLYVLTSISEGLTALDTVVSSSCCTSLDYIVTYLFKHIAKEGKKSLRCREATQAGQRLLHFMQQNPEVLQQMMSVLMNTIVFEDCRNQWSVSRPLLGLILLNEKYFGELRAGLINSQPLPKQEVLAQCFRNLMEGVEQNLSVKNRDRFTQNLSVFRRDMAEALRSDGSTEPLDMMS
SIO_010081: RANBP17
subclass of: SO_0000673
so part of: RANBP17
location: join(2648017..2648034,2662102..2662248,2665755..2665845,2674456..2674622,2679158..2679223,2684929..2685033,2685811..2685976,2689142..2689215,2691413..2691532,2692886..2693032,2693552..2693724,2695932..2696125,2738330..2738435,2758673..2758808,2904269..2904328,2912729..2912802,2913826..2913906,2923780..2923843,2923936..2924044,2941252..2941355,2947027..2947115,2956766..2956873,2959017..2959099,2970836..2971050,2974944..2975082,2992088..2992254,3019311..3019409,3021280..3021407,3023381..3023471)
location: region:2648017-3023471:1
so has part: feature:2648017-2648034:1:exon
so has part: feature:2662102-2662248:1:exon
so has part: feature:2665755-2665845:1:exon
so has part: feature:2674456-2674622:1:exon
so has part: feature:2679158-2679223:1:exon
so has part: feature:2684929-2685033:1:exon
so has part: feature:2685811-2685976:1:exon
so has part: feature:2689142-2689215:1:exon
so has part: feature:2691413-2691532:1:exon
so has part: feature:2692886-2693032:1:exon
so has part: feature:2693552-2693724:1:exon
so has part: feature:2695932-2696125:1:exon
so has part: feature:2738330-2738435:1:exon
so has part: feature:2758673-2758808:1:exon
so has part: feature:2904269-2904328:1:exon
so has part: feature:2912729-2912802:1:exon
so has part: feature:2913826-2913906:1:exon
so has part: feature:2923780-2923843:1:exon
so has part: feature:2923936-2924044:1:exon
so has part: feature:2941252-2941355:1:exon
so has part: feature:2947027-2947115:1:exon
so has part: feature:2956766-2956873:1:exon
so has part: feature:2959017-2959099:1:exon
so has part: feature:2970836-2971050:1:exon
so has part: feature:2974944-2975082:1:exon
so has part: feature:2992088-2992254:1:exon
so has part: feature:3019311-3019409:1:exon
so has part: feature:3021280-3021407:1:exon
so has part: feature:3023381-3023471:1:exon

XP_027376384.1
type: Protein
SIO_000068: ncbiprotein

position:2648017:1
position: 2648017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3023471:1
position: 3023471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2648017-2648034:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2662102-2662248:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2665755-2665845:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2674456-2674622:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2679158-2679223:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2684929-2685033:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2685811-2685976:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2689142-2689215:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2691413-2691532:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2692886-2693032:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2693552-2693724:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2695932-2696125:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2738330-2738435:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2758673-2758808:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2904269-2904328:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2912729-2912802:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2913826-2913906:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2923780-2923843:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:2923936-2924044:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:2941252-2941355:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:2947027-2947115:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:2956766-2956873:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:2959017-2959099:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:2970836-2971050:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:2974944-2975082:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:2992088-2992254:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:3019311-3019409:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:3021280-3021407:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:3023381-3023471:1:exon

RANBP17
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: RANBP17
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ran-binding protein 17 isoform X2
translation: MALHFQSLAELEALCTHLYIGTDLTQRIEAEKALLELIDSPECLSKCQLLLEQGTTSYAQLLAATCLSKLVSRVSPLPVEQRIDIRNYILNYVASQPKLAPFVIQALIQVIAKITKSGWFEVQKDRFVFREIIADVKTFLQGAMEHCIIGVIILSELTQEMNLVDYSRPSAKHRKIATSFRDTSLKDILVLACSLLKEILAKPLNLQDQDQQNLVMQVLKLVLNCLNFDFIGSSADESADDLCTVQIPTTWRAIFLEPETLDLFFNLYHSLPPLLSQLALSCLVQFASTRRSLFSSPERAKYLGNLIKGVKRILENPQGLSDPGNYHEFCRFLARLKTNYQLGELVMVKEYPEVIRLIANFTITSLQHWEFAPNSVHYLLTLWQRMVASVPFVKSTEPHLLDTYAPEITKAFITSRLESVAVVVRDNLDDPLDDTTTVFQQLEQLCTVSRCEYEKTCTLLVQLFDQNAQNYQKLLHSASRVTVDMAIQEGRLAWLVYLVGTVVGGRLTYTSTDEHDAMDGELSCRVFQLISLMDTGLPQCSNEKIELAILWFLDQFRKTYVGDQLQRTSKVYARMSEVLGITDDNHVLETFMTKIVTNLKYWGRCEPVISRTLQFLNDLSVGYILLKKLVKIDAVKFMLKNHTSEHFPFLGISGSYSLSDFRCRTAFYTALTRLLMVDLGEDEDEFENFMLPLTVSFETVLQIFNNNFKQEDVKRMLIGLARDLRGIAFALNTKTSYTMLFDWMYPTYLPILQRAIEQWYGEPACTTPILKLMAELMQNRSQRLNFDVSSPNGILLFREASKMICTYGTQILSLGSLSKDQIYPMKLKGISICYSALKSALCGNYVSFGVFKLYGDNHFDNVLQAFVKMLLSVSHSDLLQYRKLSQSYYPLLECLTQDHMSFITSLDPPVLLYVLTSISEGLTALDTVVSSSCCTSLDYIVTYLFKHIAKEGKKSLRCREATQAGQRLLHFMQQNPEVLQQMMSVLMNTIVFEDCRNQWSVSRPLLGLILLNEKYFGELRAGLINSQPLPKQEVLAQCFRNLMEGVEQNLSVKNRDRFTQNLSVFRRDMAEALRSDGSTEPLDMMS
SIO_010081: RANBP17
subclass of: SO_0000673
so part of: RANBP17
location: join(2648017..2648034,2662102..2662248,2665755..2665845,2674456..2674622,2679158..2679223,2684929..2685033,2685811..2685976,2689142..2689215,2691413..2691532,2692886..2693032,2693552..2693724,2695932..2696125,2738330..2738435,2758673..2758808,2912729..2912802,2913826..2913906,2923780..2923843,2923936..2924044,2941252..2941355,2947027..2947115,2956766..2956873,2959017..2959099,2970836..2971050,2974944..2975082,2992088..2992254,3019311..3019409,3021280..3021407,3023381..3023471)
location: region:2648017-3023471:1
so has part: feature:2648017-2648034:1:exon
so has part: feature:2662102-2662248:1:exon
so has part: feature:2665755-2665845:1:exon
so has part: feature:2674456-2674622:1:exon
so has part: feature:2679158-2679223:1:exon
so has part: feature:2684929-2685033:1:exon
so has part: feature:2685811-2685976:1:exon
so has part: feature:2689142-2689215:1:exon
so has part: feature:2691413-2691532:1:exon
so has part: feature:2692886-2693032:1:exon
so has part: feature:2693552-2693724:1:exon
so has part: feature:2695932-2696125:1:exon
so has part: feature:2738330-2738435:1:exon
so has part: feature:2758673-2758808:1:exon
so has part: feature:2912729-2912802:1:exon
so has part: feature:2913826-2913906:1:exon
so has part: feature:2923780-2923843:1:exon
so has part: feature:2923936-2924044:1:exon
so has part: feature:2941252-2941355:1:exon
so has part: feature:2947027-2947115:1:exon
so has part: feature:2956766-2956873:1:exon
so has part: feature:2959017-2959099:1:exon
so has part: feature:2970836-2971050:1:exon
so has part: feature:2974944-2975082:1:exon
so has part: feature:2992088-2992254:1:exon
so has part: feature:3019311-3019409:1:exon
so has part: feature:3021280-3021407:1:exon
so has part: feature:3023381-3023471:1:exon

XP_027376385.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2648017-2648034:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2662102-2662248:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2665755-2665845:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2674456-2674622:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2679158-2679223:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2684929-2685033:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2685811-2685976:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2689142-2689215:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2691413-2691532:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2692886-2693032:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2693552-2693724:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2695932-2696125:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2738330-2738435:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2758673-2758808:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2912729-2912802:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2913826-2913906:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2923780-2923843:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2923936-2924044:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:2941252-2941355:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:2947027-2947115:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:2956766-2956873:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:2959017-2959099:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:2970836-2971050:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:2974944-2975082:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:2992088-2992254:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:3019311-3019409:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:3021280-3021407:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:3023381-3023471:1:exon

RANBP17
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: RANBP17
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ran-binding protein 17 isoform X5
translation: MALHFQSLAELEALCTHLYIGTDLTQRIEAEKALLELIDSPECLSKCQLLLEQGTTSYAQLLAATCLSKLVSRVSPLPVEQRIDIRNYILNYVASQPKLAPFVIQALIQVIAKITKSGWFEVQKDRFVFREIIADVKTFLQGAMEHCIIGVIILSELTQEMNLVDYSRPSAKHRKIATSFRDTSLKDILVLACSLLKEILAKPLNLQDQDQQNLVMQVLKLVLNCLNFDFIGSSADESADDLCTVQIPTTWRAIFLEPETLDLFFNLYHSLPPLLSQLALSCLVQFASTRRSLFSSPERAKYLGNLIKGVKRILENPQGLSDPGNYHEFCRFLARLKTNYQLGELVMVKEYPEVIRLIANFTITSLQHWEFAPNSVHYLLTLWQRMVASVPFVKSTEPHLLDTYAPEITKAFITSRLESVAVVVRDNLDDPLDDTTTVFQQLEQLCTVSRCEYEKTCTLLVQLFDQNAQNYQKLLHSASRVTVDMAIQEGRLAWLVYLVGTVVGGRLTYTSTDEHDAMDGELSCRVFQLISLMDTGLPQCSNEKIELAILWFLDQFRKTYVGDQLQRTSKVVRLRSDVSRVPEKAWKVVKVYARMSEVLGITDDNHVLETFMTKIVTNLKYWGRCEPVISRTLQFLNDLSVGYILLKKLVKIDAVKFMLKNHTSEHFPFLGISGSYSLSDFRCRTAFYTALTRLLMVDLGEDEDEFENFMLPLTVSFETVLQIFNNNFKQEDVKRMLIGLARDLRGIAFALNTKTSYTMLFDWMYPTYLPILQRAIEQWYGEPACTTPILKLMAELMQNRSQRLNFDVSSPNGILLFREASKMICTYAISETEPVVLSTLGMSHPGPHELHHQLRSSCTPVCPHIHLRGTHCS
SIO_010081: RANBP17
subclass of: SO_0000673
so part of: RANBP17
location: join(2648017..2648034,2662102..2662248,2665755..2665845,2674456..2674622,2679158..2679223,2684929..2685033,2685811..2685976,2689142..2689215,2691413..2691532,2692886..2693032,2693552..2693724,2695932..2696125,2738330..2738435,2758673..2758808,2904269..2904328,2912729..2912802,2913826..2913906,2923780..2923843,2923936..2924044,2941252..2941355,2947027..2947115,2956766..2956873,2959017..2959099,2974944..2975082,3019311)
location: region:2648017-3019311:1
so has part: feature:2648017-2648034:1:exon
so has part: feature:2662102-2662248:1:exon
so has part: feature:2665755-2665845:1:exon
so has part: feature:2674456-2674622:1:exon
so has part: feature:2679158-2679223:1:exon
so has part: feature:2684929-2685033:1:exon
so has part: feature:2685811-2685976:1:exon
so has part: feature:2689142-2689215:1:exon
so has part: feature:2691413-2691532:1:exon
so has part: feature:2692886-2693032:1:exon
so has part: feature:2693552-2693724:1:exon
so has part: feature:2695932-2696125:1:exon
so has part: feature:2738330-2738435:1:exon
so has part: feature:2758673-2758808:1:exon
so has part: feature:2904269-2904328:1:exon
so has part: feature:2912729-2912802:1:exon
so has part: feature:2913826-2913906:1:exon
so has part: feature:2923780-2923843:1:exon
so has part: feature:2923936-2924044:1:exon
so has part: feature:2941252-2941355:1:exon
so has part: feature:2947027-2947115:1:exon
so has part: feature:2956766-2956873:1:exon
so has part: feature:2959017-2959099:1:exon
so has part: feature:2974944-2975082:1:exon
so has part: feature:3019311-3019311:1:exon

XP_027376388.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2648017-2648034:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2662102-2662248:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2665755-2665845:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2674456-2674622:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2679158-2679223:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2684929-2685033:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2685811-2685976:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2689142-2689215:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2691413-2691532:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2692886-2693032:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2693552-2693724:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2695932-2696125:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2738330-2738435:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2758673-2758808:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2904269-2904328:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2912729-2912802:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2913826-2913906:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2923780-2923843:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:2923936-2924044:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:2941252-2941355:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:2947027-2947115:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:2956766-2956873:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:2959017-2959099:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:2974944-2975082:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:3019311-3019311:1:exon

RANBP17
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: RANBP17
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ran-binding protein 17 isoform X4
translation: MALHFQSLAELEALCTHLYIGTDLTQRIEAEKALLELIDSPECLSKCQLLLEQGTTSYAQLLAATCLSKLVSRVSPLPVEQRIDIRNYILNYVASQPKLAPFVIQALIQVIAKITKSGWFEVQKDRFVFREIIADVKTFLQGAMEHCIIGVIILSELTQEMNLVDYSRPSAKHRKIATSFRDTSLKDILVLACSLLKEILAKPLNLQDQDQQNLVMQVLKLVLNCLNFDFIGSSADESADDLCTVQIPTTWRAIFLEPETLDLFFNLYHSLPPLLSQLALSCLVQFASTRRSLFSSPERAKYLGNLIKGVKRILENPQGLSDPGNYHEFCRFLARLKTNYQLGELVMVKEYPEVIRLIANFTITSLQHWEFAPNSVHYLLTLWQRMVASVPFVKSTEPHLLDTYAPEITKAFITSRLESVAVVVRDNLDDPLDDTTTVFQQLEQLCTVSRCEYEKTCTLLVQLFDQNAQNYQKLLHSASRVTVDMAIQEGRLAWLVYLVGTVVGGRLTYTSTDEHDAMDGELSCRVFQLISLMDTGLPQCSNEKIELAILWFLDQFRKTYVGDQLQRTSKVVRLRSDVSRVPEKAWKVVKVYARMSEVLGITDDNHVLETFMTKIVTNLKYWGRCEPVISRTLQFLNDLSVGYILLKKLVKIDAVKFMLKNHTSEHFPFLGISGSYSLSDFRCRTAFYTALTRLLMVDLGEDEDEFENFMLPLTVSFETVLQIFNNNFKQEDVKRMLIGLARDLRGIAFALNTKTSYTMLFDWMYPTYLPILQRAIEQWYGEPACTTPILKLMAELMQNRSQRLNFDVSSPNGILLFREASKMICTYAISETEPVVLSTLGMSHPGPHELHHQLRSSCTPVCPHIHLRGTHCS
SIO_010081: RANBP17
subclass of: SO_0000673
so part of: RANBP17
location: join(2648017..2648034,2662102..2662248,2665755..2665845,2674456..2674622,2679158..2679223,2684929..2685033,2685811..2685976,2689142..2689215,2691413..2691532,2692886..2693032,2693552..2693724,2695932..2696125,2738330..2738435,2758673..2758808,2904269..2904328,2912729..2912802,2913826..2913906,2923780..2923843,2923936..2924044,2941252..2941355,2947027..2947115,2956766..2956873,2959017..2959099,2974944..2975082,2992088)
location: region:2648017-2992088:1
so has part: feature:2648017-2648034:1:exon
so has part: feature:2662102-2662248:1:exon
so has part: feature:2665755-2665845:1:exon
so has part: feature:2674456-2674622:1:exon
so has part: feature:2679158-2679223:1:exon
so has part: feature:2684929-2685033:1:exon
so has part: feature:2685811-2685976:1:exon
so has part: feature:2689142-2689215:1:exon
so has part: feature:2691413-2691532:1:exon
so has part: feature:2692886-2693032:1:exon
so has part: feature:2693552-2693724:1:exon
so has part: feature:2695932-2696125:1:exon
so has part: feature:2738330-2738435:1:exon
so has part: feature:2758673-2758808:1:exon
so has part: feature:2904269-2904328:1:exon
so has part: feature:2912729-2912802:1:exon
so has part: feature:2913826-2913906:1:exon
so has part: feature:2923780-2923843:1:exon
so has part: feature:2923936-2924044:1:exon
so has part: feature:2941252-2941355:1:exon
so has part: feature:2947027-2947115:1:exon
so has part: feature:2956766-2956873:1:exon
so has part: feature:2959017-2959099:1:exon
so has part: feature:2974944-2975082:1:exon
so has part: feature:2992088-2992088:1:exon

XP_027376387.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2648017-2648034:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2662102-2662248:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2665755-2665845:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2674456-2674622:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2679158-2679223:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2684929-2685033:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2685811-2685976:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2689142-2689215:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2691413-2691532:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2692886-2693032:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2693552-2693724:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2695932-2696125:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2738330-2738435:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2758673-2758808:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2904269-2904328:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2912729-2912802:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2913826-2913906:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2923780-2923843:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:2923936-2924044:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:2941252-2941355:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:2947027-2947115:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:2956766-2956873:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:2959017-2959099:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:2974944-2975082:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:2992088-2992088:1:exon

RANBP17
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: RANBP17
product: RAN binding protein 17, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_027520585.1
SIO_010081: RANBP17
subclass of: SO_0000673
so part of: RANBP17
location: join(2662114..2662248,2674456..2674622,2679158..2679223,2684929..2685033,2685811..2685976,2689142..2689215,2691413..2691532,2692886..2693032,2693552..2693724,2695932..2696125,2738330..2738435,2758673..2758808,2904269..2904328,2912729..2912802,2913826..2913906,2923780..2923843,2923936..2924044,2941252..2941355,2947027..2947115,2956766..2956873,2959017..2959099,2970836..2971050,2974944..2975082,2992088..2992254,3019311..3019409,3021280..3021407,3023381..3023798)
location: region:2662114-3023798:1
so has part: feature:2662114-2662248:1:exon
so has part: feature:2674456-2674622:1:exon
so has part: feature:2679158-2679223:1:exon
so has part: feature:2684929-2685033:1:exon
so has part: feature:2685811-2685976:1:exon
so has part: feature:2689142-2689215:1:exon
so has part: feature:2691413-2691532:1:exon
so has part: feature:2692886-2693032:1:exon
so has part: feature:2693552-2693724:1:exon
so has part: feature:2695932-2696125:1:exon
so has part: feature:2738330-2738435:1:exon
so has part: feature:2758673-2758808:1:exon
so has part: feature:2904269-2904328:1:exon
so has part: feature:2912729-2912802:1:exon
so has part: feature:2913826-2913906:1:exon
so has part: feature:2923780-2923843:1:exon
so has part: feature:2923936-2924044:1:exon
so has part: feature:2941252-2941355:1:exon
so has part: feature:2947027-2947115:1:exon
so has part: feature:2956766-2956873:1:exon
so has part: feature:2959017-2959099:1:exon
so has part: feature:2970836-2971050:1:exon
so has part: feature:2974944-2975082:1:exon
so has part: feature:2992088-2992254:1:exon
so has part: feature:3019311-3019409:1:exon
so has part: feature:3021280-3021407:1:exon
so has part: feature:3023381-3023798:1:exon

position:2662114:1
position: 2662114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2662114-2662248:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2674456-2674622:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2679158-2679223:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2684929-2685033:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2685811-2685976:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2689142-2689215:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2691413-2691532:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2692886-2693032:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2693552-2693724:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2695932-2696125:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2738330-2738435:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2758673-2758808:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2904269-2904328:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2912729-2912802:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2913826-2913906:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2923780-2923843:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2923936-2924044:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2941252-2941355:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:2947027-2947115:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:2956766-2956873:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:2959017-2959099:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:2970836-2971050:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:2974944-2975082:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:2992088-2992254:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:3019311-3019409:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:3021280-3021407:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:3023381-3023798:1:exon

RANBP17
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: RANBP17
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ran-binding protein 17 isoform X3
translation: MSQQVSTFIRTRNRNYILNYVASQPKLAPFVIQALIQVIAKITKSGWFEVQKDRFVFREIIADVKTFLQGAMEHCIIGVIILSELTQEMNLVDYSRPSAKHRKIATSFRDTSLKDILVLACSLLKEILAKPLNLQDQDQQNLVMQVLKLVLNCLNFDFIGSSADESADDLCTVQIPTTWRAIFLEPETLDLFFNLYHSLPPLLSQLALSCLVQFASTRRSLFSSPERAKYLGNLIKGVKRILENPQGLSDPGNYHEFCRFLARLKTNYQLGELVMVKEYPEVIRLIANFTITSLQHWEFAPNSVHYLLTLWQRMVASVPFVKSTEPHLLDTYAPEITKAFITSRLESVAVVVRDNLDDPLDDTTTVFQQLEQLCTVSRCEYEKTCTLLVQLFDQNAQNYQKLLHSASRVTVDMAIQEGRLAWLVYLVGTVVGGRLTYTSTDEHDAMDGELSCRVFQLISLMDTGLPQCSNEKIELAILWFLDQFRKTYVGDQLQRTSKVVRLRSDVSRVPEKAWKVVKVYARMSEVLGITDDNHVLETFMTKIVTNLKYWGRCEPVISRTLQFLNDLSVGYILLKKLVKIDAVKFMLKNHTSEHFPFLGISGSYSLSDFRCRTAFYTALTRLLMVDLGEDEDEFENFMLPLTVSFETVLQIFNNNFKQEDVKRMLIGLARDLRGIAFALNTKTSYTMLFDWMYPTYLPILQRAIEQWYGEPACTTPILKLMAELMQNRSQRLNFDVSSPNGILLFREASKMICTYGTQILSLGSLSKDQIYPMKLKGISICYSALKSALCGNYVSFGVFKLYGDNHFDNVLQAFVKMLLSVSHSDLLQYRKLSQSYYPLLECLTQDHMSFITSLDPPVLLYVLTSISEGLTALDTVVSSSCCTSLDYIVTYLFKHIAKEGKKSLRCREATQAGQRLLHFMQQNPEVLQQMMSVLMNTIVFEDCRNQWSVSRPLLGLILLNEKYFGELRAGLINSQPLPKQEVLAQCFRNLMEGVEQNLSVKNRDRFTQNLSVFRRDMAEALRSDGSTEPLDMMS
SIO_010081: RANBP17
subclass of: SO_0000673
so part of: RANBP17
location: join(2662209..2662248,2674456..2674622,2679158..2679223,2684929..2685033,2685811..2685976,2689142..2689215,2691413..2691532,2692886..2693032,2693552..2693724,2695932..2696125,2738330..2738435,2758673..2758808,2904269..2904328,2912729..2912802,2913826..2913906,2923780..2923843,2923936..2924044,2941252..2941355,2947027..2947115,2956766..2956873,2959017..2959099,2970836..2971050,2974944..2975082,2992088..2992254,3019311..3019409,3021280..3021407,3023381..3023471)
location: region:2662209-3023471:1
so has part: feature:2662209-2662248:1:exon
so has part: feature:2674456-2674622:1:exon
so has part: feature:2679158-2679223:1:exon
so has part: feature:2684929-2685033:1:exon
so has part: feature:2685811-2685976:1:exon
so has part: feature:2689142-2689215:1:exon
so has part: feature:2691413-2691532:1:exon
so has part: feature:2692886-2693032:1:exon
so has part: feature:2693552-2693724:1:exon
so has part: feature:2695932-2696125:1:exon
so has part: feature:2738330-2738435:1:exon
so has part: feature:2758673-2758808:1:exon
so has part: feature:2904269-2904328:1:exon
so has part: feature:2912729-2912802:1:exon
so has part: feature:2913826-2913906:1:exon
so has part: feature:2923780-2923843:1:exon
so has part: feature:2923936-2924044:1:exon
so has part: feature:2941252-2941355:1:exon
so has part: feature:2947027-2947115:1:exon
so has part: feature:2956766-2956873:1:exon
so has part: feature:2959017-2959099:1:exon
so has part: feature:2970836-2971050:1:exon
so has part: feature:2974944-2975082:1:exon
so has part: feature:2992088-2992254:1:exon
so has part: feature:3019311-3019409:1:exon
so has part: feature:3021280-3021407:1:exon
so has part: feature:3023381-3023471:1:exon

XP_027376386.1
type: Protein
SIO_000068: ncbiprotein

position:2662209:1
position: 2662209
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2662209-2662248:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2674456-2674622:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2679158-2679223:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2684929-2685033:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2685811-2685976:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2689142-2689215:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2691413-2691532:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2692886-2693032:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2693552-2693724:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2695932-2696125:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2738330-2738435:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2758673-2758808:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2904269-2904328:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2912729-2912802:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2913826-2913906:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2923780-2923843:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2923936-2924044:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2941252-2941355:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:2947027-2947115:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:2956766-2956873:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:2959017-2959099:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:2970836-2971050:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:2974944-2975082:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:2992088-2992254:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:3019311-3019409:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:3021280-3021407:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:3023381-3023471:1:exon

TLX3
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: TLX3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3033318..3036117
location: region:3033318-3036117:1
so has part: feature:3033318-3036117:1:exon
subclass of: SO_0000010

113879144
type: Gene
SIO_000068: ncbigene

position:3033318:1
position: 3033318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3036117:1
position: 3036117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3033318-3036117:1:exon

TLX3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: TLX3
product: T cell leukemia homeobox 3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_027520414.1
SIO_010081: TLX3
subclass of: SO_0000673
so part of: TLX3
location: join(3033318..3033864,3034221..3034464,3035400..3036117)
location: region:3033318-3036117:1
so has part: feature:3033318-3033864:1:exon
so has part: feature:3034221-3034464:1:exon
so has part: feature:3035400-3036117:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3033318-3033864:1:exon

position:3033864:1
position: 3033864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3034221-3034464:1:exon

position:3034221:1
position: 3034221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3034464:1
position: 3034464
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3035400-3036117:1:exon

position:3035400:1
position: 3035400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TLX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: TLX3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: T-cell leukemia homeobox protein 3
translation: MEASASAQTPHPHEPISFGIDQILNSPDQDSASAPRGPDGASYLGGPPGGRPGATYPSLPTSFAGLGAPFEDAGSYSVNLSLAPAGVIRVPAHRPLPGAVPPPLPSALPAMPSVPTVSSLGGLNFPWMESSRRFVKDRFTAAAALTPFTVTRRIGHPYQNRTPPKRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQASRLMLQLQHDAFQKSLNDSIQPDPLCLHNSSLFALQNLQPWEEDSSKVPAVTSLV
SIO_010081: TLX3
subclass of: SO_0000673
so part of: TLX3
location: join(3033444..3033864,3034221..3034464,3035400..3035610)
location: region:3033444-3035610:1
so has part: feature:3033444-3033864:1:exon
so has part: feature:3034221-3034464:1:exon
so has part: feature:3035400-3035610:1:exon

XP_027376215.1
type: Protein
SIO_000068: ncbiprotein

position:3033444:1
position: 3033444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3035610:1
position: 3035610
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3033444-3033864:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3034221-3034464:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3035400-3035610:1:exon

TRNAK-UUU
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: TRNAK-UUU
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 3048076..3048146
location: region:3048076-3048146:1
so has part: feature:3048076-3048146:1:exon
subclass of: SO_0000663

113879323
type: Gene
SIO_000068: ncbigene

position:3048076:1
position: 3048076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3048146:1
position: 3048146
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3048076-3048146:1:exon

TRNAK-UUU
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 30522
gene: TRNAK-UUU
product: tRNA-Lys
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA lysine (anticodon UUU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:3048108..3048110,aa:Lys,seq:ttt)
SIO_010081: TRNAK-UUU
subclass of: SO_0000673
so part of: TRNAK-UUU
location: 3048076..3048146
location: region:3048076-3048146:1
so has part: feature:3048076-3048146:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3048076-3048146:1:exon

NPM1
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: NPM1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3079802..3092702
location: region:3079802-3092702:1
so has part: feature:3079802-3092702:1:exon
subclass of: SO_0000010

113878906
type: Gene
SIO_000068: ncbigene

position:3079802:1
position: 3079802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3092702:1
position: 3092702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3079802-3092702:1:exon

NPM1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: NPM1
product: nucleophosmin 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 129 ESTs, 1 long SRA read, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 217 samples with support for all annotated introns
transcript id: XM_027520069.1
SIO_010081: NPM1
subclass of: SO_0000673
so part of: NPM1
location: join(3079802..3079964,3081742..3081821,3082378..3082497,3082790..3082883,3083080..3083186,3083282..3083352,3086828..3086882,3087235..3087318,3088071..3088172,3089926..3090000,3092330..3092702)
location: region:3079802-3092702:1
so has part: feature:3079802-3079964:1:exon
so has part: feature:3081742-3081821:1:exon
so has part: feature:3082378-3082497:1:exon
so has part: feature:3082790-3082883:1:exon
so has part: feature:3083080-3083186:1:exon
so has part: feature:3083282-3083352:1:exon
so has part: feature:3086828-3086882:1:exon
so has part: feature:3087235-3087318:1:exon
so has part: feature:3088071-3088172:1:exon
so has part: feature:3089926-3090000:1:exon
so has part: feature:3092330-3092702:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3079802-3079964:1:exon

position:3079964:1
position: 3079964
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3081742-3081821:1:exon

position:3081742:1
position: 3081742
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3081821:1
position: 3081821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3082378-3082497:1:exon

position:3082378:1
position: 3082378
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3082497:1
position: 3082497
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3082790-3082883:1:exon

position:3082790:1
position: 3082790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3082883:1
position: 3082883
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3083080-3083186:1:exon

position:3083080:1
position: 3083080
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3083186:1
position: 3083186
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3083282-3083352:1:exon

position:3083282:1
position: 3083282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3083352:1
position: 3083352
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3086828-3086882:1:exon

position:3086828:1
position: 3086828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3086882:1
position: 3086882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3087235-3087318:1:exon

position:3087235:1
position: 3087235
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3087318:1
position: 3087318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:3088071-3088172:1:exon

position:3088071:1
position: 3088071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3088172:1
position: 3088172
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:3089926-3090000:1:exon

position:3089926:1
position: 3089926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3090000:1
position: 3090000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:3092330-3092702:1:exon

position:3092330:1
position: 3092330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

NPM1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: NPM1
product: nucleophosmin 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 48 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 181 samples with support for all annotated introns
transcript id: XM_027520070.1
SIO_010081: NPM1
subclass of: SO_0000673
so part of: NPM1
location: join(3079802..3079964,3081742..3081821,3082378..3082497,3082790..3082883,3083080..3083186,3083282..3083352,3086828..3086882,3087235..3087318,3088071..3088172,3089176..3089496)
location: region:3079802-3089496:1
so has part: feature:3079802-3079964:1:exon
so has part: feature:3081742-3081821:1:exon
so has part: feature:3082378-3082497:1:exon
so has part: feature:3082790-3082883:1:exon
so has part: feature:3083080-3083186:1:exon
so has part: feature:3083282-3083352:1:exon
so has part: feature:3086828-3086882:1:exon
so has part: feature:3087235-3087318:1:exon
so has part: feature:3088071-3088172:1:exon
so has part: feature:3089176-3089496:1:exon

position:3089496:1
position: 3089496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3079802-3079964:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3081742-3081821:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3082378-3082497:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3082790-3082883:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3083080-3083186:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3083282-3083352:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3086828-3086882:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3087235-3087318:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3088071-3088172:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3089176-3089496:1:exon

position:3089176:1
position: 3089176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

NPM1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: NPM1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: nucleophosmin isoform X1
translation: MEDSMDMDMSPLRPQNYLFGCELKADRDYHFKVDNDENEHQLSLRTVSLGAGAKDELHVVEAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVEEDAESEEEEEEEVKLLSISGKRSAPGSGSKVPQKKVKLAADEDEDDDDDDDDDDDEDDDDDDFDEEVEEKAPVKKSVRDTPAKNAQKSNQNGKDSKPSTPRSKGQESFKKQEKTPKTPKGPSSVEDIKAKMQASIEKGGSLPKVEAKFINYVKNCFRMTDQEAIQDLWQWRKSL
SIO_010081: NPM1
subclass of: SO_0000673
so part of: NPM1
location: join(3079907..3079964,3081742..3081821,3082378..3082497,3082790..3082883,3083080..3083186,3083282..3083352,3086828..3086882,3087235..3087318,3088071..3088172,3089926..3090000,3092330..3092368)
location: region:3079907-3092368:1
so has part: feature:3079907-3079964:1:exon
so has part: feature:3081742-3081821:1:exon
so has part: feature:3082378-3082497:1:exon
so has part: feature:3082790-3082883:1:exon
so has part: feature:3083080-3083186:1:exon
so has part: feature:3083282-3083352:1:exon
so has part: feature:3086828-3086882:1:exon
so has part: feature:3087235-3087318:1:exon
so has part: feature:3088071-3088172:1:exon
so has part: feature:3089926-3090000:1:exon
so has part: feature:3092330-3092368:1:exon

XP_027375870.1
type: Protein
SIO_000068: ncbiprotein

position:3079907:1
position: 3079907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3092368:1
position: 3092368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3079907-3079964:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3081742-3081821:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3082378-3082497:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3082790-3082883:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3083080-3083186:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3083282-3083352:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3086828-3086882:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3087235-3087318:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3088071-3088172:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3089926-3090000:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3092330-3092368:1:exon

NPM1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: NPM1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: nucleophosmin isoform X2
translation: MEDSMDMDMSPLRPQNYLFGCELKADRDYHFKVDNDENEHQLSLRTVSLGAGAKDELHVVEAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVEEDAESEEEEEEEVKLLSISGKRSAPGSGSKVPQKKVKLAADEDEDDDDDDDDDDDEDDDDDDFDEEVEEKAPVKKSVRDTPAKNAQKSNQNGKDSKPSTPRSKGQESFKKQEKTPKTPKGPSSVEDIKAKMQASIEKAH
SIO_010081: NPM1
subclass of: SO_0000673
so part of: NPM1
location: join(3079907..3079964,3081742..3081821,3082378..3082497,3082790..3082883,3083080..3083186,3083282..3083352,3086828..3086882,3087235..3087318,3088071..3088172,3089176..3089184)
location: region:3079907-3089184:1
so has part: feature:3079907-3079964:1:exon
so has part: feature:3081742-3081821:1:exon
so has part: feature:3082378-3082497:1:exon
so has part: feature:3082790-3082883:1:exon
so has part: feature:3083080-3083186:1:exon
so has part: feature:3083282-3083352:1:exon
so has part: feature:3086828-3086882:1:exon
so has part: feature:3087235-3087318:1:exon
so has part: feature:3088071-3088172:1:exon
so has part: feature:3089176-3089184:1:exon

XP_027375871.1
type: Protein
SIO_000068: ncbiprotein

position:3089184:1
position: 3089184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3079907-3079964:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3081742-3081821:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3082378-3082497:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3082790-3082883:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3083080-3083186:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3083282-3083352:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3086828-3086882:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3087235-3087318:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3088071-3088172:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3089176-3089184:1:exon

FGF18
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: FGF18
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3101278..3137339
location: region:3101278-3137339:1
so has part: feature:3101278-3137339:1:exon
subclass of: SO_0000010

113879029
type: Gene
SIO_000068: ncbigene

position:3101278:1
position: 3101278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3137339:1
position: 3137339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3101278-3137339:1:exon

FGF18
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: FGF18
product: fibroblast growth factor 18
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 5 ESTs, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 42 samples with support for all annotated introns
transcript id: XM_027520284.1
SIO_010081: FGF18
subclass of: SO_0000673
so part of: FGF18
location: join(3101278..3101422,3101594..3101630,3116417..3116597,3129266..3129372,3136249..3137339)
location: region:3101278-3137339:1
so has part: feature:3101278-3101422:1:exon
so has part: feature:3101594-3101630:1:exon
so has part: feature:3116417-3116597:1:exon
so has part: feature:3129266-3129372:1:exon
so has part: feature:3136249-3137339:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3101278-3101422:1:exon

position:3101422:1
position: 3101422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3101594-3101630:1:exon

position:3101594:1
position: 3101594
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3101630:1
position: 3101630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3116417-3116597:1:exon

position:3116417:1
position: 3116417
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3116597:1
position: 3116597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3129266-3129372:1:exon

position:3129266:1
position: 3129266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3129372:1
position: 3129372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3136249-3137339:1:exon

position:3136249:1
position: 3136249
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

FGF18
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: FGF18
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: fibroblast growth factor 18
translation: MYSAPSACTCLCLHFLLLCFQVQVLAAEENVDFRIHVENQTRARDDVSRKQLRLYQLYSRTSGKHIQVLGRRISARGEDGDKYAQLLVETDTFGSQVRIKGKETEFYLCMNRKGKLVGKPDGTSKECVFIEKVLENNYTALMSAKYSGWYVGFTKKGRPRKGPKTRENQQDVHFMKRYPKGQAELQKPFKYTTVTKRSRRIRPTHPG
SIO_010081: FGF18
subclass of: SO_0000673
so part of: FGF18
location: join(3101391..3101422,3101594..3101630,3116417..3116597,3129266..3129372,3136249..3136515)
location: region:3101391-3136515:1
so has part: feature:3101391-3101422:1:exon
so has part: feature:3101594-3101630:1:exon
so has part: feature:3116417-3116597:1:exon
so has part: feature:3129266-3129372:1:exon
so has part: feature:3136249-3136515:1:exon

XP_027376085.1
type: Protein
SIO_000068: ncbiprotein

position:3101391:1
position: 3101391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3136515:1
position: 3136515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3101391-3101422:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3101594-3101630:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3116417-3116597:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3129266-3129372:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3136249-3136515:1:exon

LOC113879030
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: LOC113879030
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(3126631..3127105)
location: region:3126631-3127105:-1
so has part: feature:3126631-3127105:-1:exon

113879030
type: Gene
SIO_000068: ncbigene

position:3126631:-1
position: 3126631
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3127105:-1
position: 3127105
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3126631-3127105:-1:exon

LOC113879030
type: Exon
subclass of: SO_0000147
RO_0002162: 30522
gene: LOC113879030
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 53 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC113879030
subclass of: SO_0000673
so part of: LOC113879030
location: complement(3126631..3127105)
location: region:3126631-3127105:-1
so has part: feature:3126631-3127105:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3126631-3127105:-1:exon

LOC113879304
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: LOC113879304
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 3214345..3214449
location: region:3214345-3214449:1
so has part: feature:3214345-3214449:1:exon
subclass of: SO_0000623

113879304
type: Gene
SIO_000068: ncbigene

position:3214345:1
position: 3214345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3214449:1
position: 3214449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3214345-3214449:1:exon

LOC113879304
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 30522
nc RNA class: snRNA
gene: LOC113879304
product: U6 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_003507278.1
SIO_010081: LOC113879304
subclass of: SO_0000673
so part of: LOC113879304
location: 3214345..3214449
location: region:3214345-3214449:1
so has part: feature:3214345-3214449:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3214345-3214449:1:exon

LOC113879164
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: LOC113879164
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3257070..3258544
location: region:3257070-3258544:1
so has part: feature:3257070-3258544:1:exon
subclass of: SO_0000011

113879164
type: Gene
SIO_000068: ncbigene

position:3257070:1
position: 3257070
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3258544:1
position: 3258544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3257070-3258544:1:exon

LOC113879164
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 30522
nc RNA class: lncRNA
gene: LOC113879164
product: uncharacterized LOC113879164
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
transcript id: XR_003507218.1
SIO_010081: LOC113879164
subclass of: SO_0000673
so part of: LOC113879164
location: join(3257070..3257500,3258213..3258544)
location: region:3257070-3258544:1
so has part: feature:3257070-3257500:1:exon
so has part: feature:3258213-3258544:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3257070-3257500:1:exon

position:3257500:1
position: 3257500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3258213-3258544:1:exon

position:3258213:1
position: 3258213
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SMIM23
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: SMIM23
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3468177..3473155
location: region:3468177-3473155:1
so has part: feature:3468177-3473155:1:exon
subclass of: SO_0000010

113878835
type: Gene
SIO_000068: ncbigene

position:3468177:1
position: 3468177
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3473155:1
position: 3473155
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3468177-3473155:1:exon

SMIM23
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: SMIM23
product: small integral membrane protein 23
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
transcript id: XM_027519940.1
SIO_010081: SMIM23
subclass of: SO_0000673
so part of: SMIM23
location: join(3468177..3468254,3472383..3472434,3472633..3472700,3472943..3473155)
location: region:3468177-3473155:1
so has part: feature:3468177-3468254:1:exon
so has part: feature:3472383-3472434:1:exon
so has part: feature:3472633-3472700:1:exon
so has part: feature:3472943-3473155:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3468177-3468254:1:exon

position:3468254:1
position: 3468254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3472383-3472434:1:exon

position:3472383:1
position: 3472383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3472434:1
position: 3472434
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3472633-3472700:1:exon

position:3472633:1
position: 3472633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3472700:1
position: 3472700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3472943-3473155:1:exon

position:3472943:1
position: 3472943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SMIM23
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: SMIM23
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: small integral membrane protein 23
translation: MVVHQVGSRGRVAAERRGSRCEDRKQTLLALLILVLYVGTGVSGRSWEVSERIRECNYPQNPVTSQVFEYQTSDSPEEPIKVMRTWLKENLHVFLEKLEKEVQELEQLVRDLEEWLDVLLGEGHPEQLCSTLRNHL
SIO_010081: SMIM23
subclass of: SO_0000673
so part of: SMIM23
location: join(3468177..3468254,3472383..3472434,3472633..3472700,3472943..3473155)
location: region:3468177-3473155:1
so has part: feature:3468177-3468254:1:exon
so has part: feature:3472383-3472434:1:exon
so has part: feature:3472633-3472700:1:exon
so has part: feature:3472943-3473155:1:exon

XP_027375741.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3468177-3468254:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3472383-3472434:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3472633-3472700:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3472943-3473155:1:exon

LOC113878836
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: LOC113878836
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(3506179..3560216)
location: region:3506179-3560216:-1
so has part: feature:3506179-3560216:-1:exon

113878836
type: Gene
SIO_000068: ncbigene

position:3506179:-1
position: 3506179
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3560216:-1
position: 3560216
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3506179-3560216:-1:exon

LOC113878836
type: Exon
subclass of: SO_0000147
RO_0002162: 30522
gene: LOC113878836
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 28% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC113878836
subclass of: SO_0000673
so part of: LOC113878836
location: complement(3506179..3507419)
location: region:3506179-3507419:-1
so has part: feature:3506179-3507419:-1:exon

position:3507419:-1
position: 3507419
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3506179-3507419:-1:exon

LOC113878836
type: Exon
subclass of: SO_0000147
RO_0002162: 30522
gene: LOC113878836
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 28% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC113878836
subclass of: SO_0000673
so part of: LOC113878836
location: complement(3545993..3546127)
location: region:3545993-3546127:-1
so has part: feature:3545993-3546127:-1:exon

position:3545993:-1
position: 3545993
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3546127:-1
position: 3546127
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3545993-3546127:-1:exon

LOC113878836
type: Exon
subclass of: SO_0000147
RO_0002162: 30522
gene: LOC113878836
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 28% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC113878836
subclass of: SO_0000673
so part of: LOC113878836
location: complement(3546299..3546498)
location: region:3546299-3546498:-1
so has part: feature:3546299-3546498:-1:exon

position:3546299:-1
position: 3546299
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3546498:-1
position: 3546498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3546299-3546498:-1:exon

FBXW11
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: FBXW11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3552480..3684100)
location: region:3552480-3684100:-1
so has part: feature:3552480-3684100:-1:exon
subclass of: SO_0000010

113879216
type: Gene
SIO_000068: ncbigene

position:3552480:-1
position: 3552480
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3684100:-1
position: 3684100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3552480-3684100:-1:exon

FBXW11
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: FBXW11
product: F-box and WD repeat domain containing 11, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 72 ESTs, 10 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 166 samples with support for all annotated introns
transcript id: XM_027520518.1
SIO_010081: FBXW11
subclass of: SO_0000673
so part of: FBXW11
location: complement(join(3552480..3554931,3561723..3561908,3562951..3563029,3563892..3564002,3565690..3565808,3568624..3568873,3570500..3570618,3572596..3572733,3579722..3579812,3580688..3580874,3590287..3590512,3593537..3593599,3683883..3684075))
location: region:3552480-3684075:-1
so has part: feature:3683883-3684075:-1:exon
so has part: feature:3593537-3593599:-1:exon
so has part: feature:3590287-3590512:-1:exon
so has part: feature:3580688-3580874:-1:exon
so has part: feature:3579722-3579812:-1:exon
so has part: feature:3572596-3572733:-1:exon
so has part: feature:3570500-3570618:-1:exon
so has part: feature:3568624-3568873:-1:exon
so has part: feature:3565690-3565808:-1:exon
so has part: feature:3563892-3564002:-1:exon
so has part: feature:3562951-3563029:-1:exon
so has part: feature:3561723-3561908:-1:exon
so has part: feature:3552480-3554931:-1:exon

position:3684075:-1
position: 3684075
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3683883-3684075:-1:exon

position:3683883:-1
position: 3683883
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3593537-3593599:-1:exon

position:3593537:-1
position: 3593537
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3593599:-1
position: 3593599
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3590287-3590512:-1:exon

position:3590287:-1
position: 3590287
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3590512:-1
position: 3590512
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3580688-3580874:-1:exon

position:3580688:-1
position: 3580688
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3580874:-1
position: 3580874
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3579722-3579812:-1:exon

position:3579722:-1
position: 3579722
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3579812:-1
position: 3579812
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3572596-3572733:-1:exon

position:3572596:-1
position: 3572596
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3572733:-1
position: 3572733
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3570500-3570618:-1:exon

position:3570500:-1
position: 3570500
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3570618:-1
position: 3570618
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3568624-3568873:-1:exon

position:3568624:-1
position: 3568624
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3568873:-1
position: 3568873
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:3565690-3565808:-1:exon

position:3565690:-1
position: 3565690
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3565808:-1
position: 3565808
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:3563892-3564002:-1:exon

position:3563892:-1
position: 3563892
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3564002:-1
position: 3564002
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:3562951-3563029:-1:exon

position:3562951:-1
position: 3562951
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3563029:-1
position: 3563029
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:3561723-3561908:-1:exon

position:3561723:-1
position: 3561723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3561908:-1
position: 3561908
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:3552480-3554931:-1:exon

position:3554931:-1
position: 3554931
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

FBXW11
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: FBXW11
product: F-box and WD repeat domain containing 11, transcript variant X9
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 72 ESTs, 7 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 122 samples with support for all annotated introns
transcript id: XM_027520524.1
SIO_010081: FBXW11
subclass of: SO_0000673
so part of: FBXW11
location: complement(join(3552480..3554931,3561723..3561908,3562951..3563029,3563892..3564002,3565690..3565808,3568624..3568873,3570500..3570618,3572596..3572733,3579722..3579812,3580688..3580874,3590287..3590512,3593537..3593599,3675172..3675233))
location: region:3552480-3675233:-1
so has part: feature:3675172-3675233:-1:exon
so has part: feature:3593537-3593599:-1:exon
so has part: feature:3590287-3590512:-1:exon
so has part: feature:3580688-3580874:-1:exon
so has part: feature:3579722-3579812:-1:exon
so has part: feature:3572596-3572733:-1:exon
so has part: feature:3570500-3570618:-1:exon
so has part: feature:3568624-3568873:-1:exon
so has part: feature:3565690-3565808:-1:exon
so has part: feature:3563892-3564002:-1:exon
so has part: feature:3562951-3563029:-1:exon
so has part: feature:3561723-3561908:-1:exon
so has part: feature:3552480-3554931:-1:exon

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FBXW11
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: FBXW11
product: F-box and WD repeat domain containing 11, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 72 ESTs, 7 long SRA reads, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
transcript id: XM_027520519.1
SIO_010081: FBXW11
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so part of: FBXW11
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SIO_000628: feature:3552480-3554931:-1:exon

FBXW11
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: FBXW11
product: F-box and WD repeat domain containing 11, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 72 ESTs, 7 long SRA reads, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 28 samples with support for all annotated introns
transcript id: XM_027520516.1
SIO_010081: FBXW11
subclass of: SO_0000673
so part of: FBXW11
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FBXW11
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: FBXW11
product: F-box and WD repeat domain containing 11, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 70 ESTs, 10 long SRA reads, 3 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 191 samples with support for all annotated introns
transcript id: XM_027520521.1
SIO_010081: FBXW11
subclass of: SO_0000673
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FBXW11
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: FBXW11
product: F-box and WD repeat domain containing 11, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 68 ESTs, 7 long SRA reads, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 94 samples with support for all annotated introns
transcript id: XM_027520517.1
SIO_010081: FBXW11
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FBXW11
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: FBXW11
product: F-box and WD repeat domain containing 11, transcript variant X8
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 65 ESTs, 8 long SRA reads, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 88 samples with support for all annotated introns
transcript id: XM_027520522.1
SIO_010081: FBXW11
subclass of: SO_0000673
so part of: FBXW11
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FBXW11
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: FBXW11
product: F-box and WD repeat domain containing 11, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 65 ESTs, 6 long SRA reads, 3 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 102 samples with support for all annotated introns
transcript id: XM_027520520.1
SIO_010081: FBXW11
subclass of: SO_0000673
so part of: FBXW11
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LOC113878836
type: Exon
subclass of: SO_0000147
RO_0002162: 30522
gene: LOC113878836
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 28% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC113878836
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urn:…
SIO_000300: 1
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FBXW11
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: FBXW11
product: F-box and WD repeat domain containing 11, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns
transcript id: XM_027520515.1
SIO_010081: FBXW11
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SIO_000628: feature:3642197-3642298:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3593537-3593599:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3590287-3590512:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3580688-3580874:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3579722-3579812:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3572596-3572733:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3570500-3570618:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3568624-3568873:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3565690-3565808:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3563892-3564002:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3562951-3563029:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3561723-3561908:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3560941-3561392:-1:exon

position:3561392:-1
position: 3561392
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

FBXW11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: FBXW11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: F-box/WD repeat-containing protein 11 isoform X7
translation: MEPDSVIEDKTIELMISNGTSSVIVSRKRPSEGNYQKEKDLCIKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENILSYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRPTDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDEKIISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNVPPSAQNETRSPSRTYTYISR
SIO_010081: FBXW11
subclass of: SO_0000673
so part of: FBXW11
location: complement(join(3561747..3561908,3562951..3563029,3563892..3564002,3565690..3565808,3568624..3568873,3570500..3570618,3572596..3572733,3579722..3579812,3580688..3580874,3590287..3590512,3683883..3683927))
location: region:3561747-3683927:-1
so has part: feature:3683883-3683927:-1:exon
so has part: feature:3590287-3590512:-1:exon
so has part: feature:3580688-3580874:-1:exon
so has part: feature:3579722-3579812:-1:exon
so has part: feature:3572596-3572733:-1:exon
so has part: feature:3570500-3570618:-1:exon
so has part: feature:3568624-3568873:-1:exon
so has part: feature:3565690-3565808:-1:exon
so has part: feature:3563892-3564002:-1:exon
so has part: feature:3562951-3563029:-1:exon
so has part: feature:3561747-3561908:-1:exon

XP_027376322.1
type: Protein
SIO_000068: ncbiprotein

position:3561747:-1
position: 3561747
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3683927:-1
position: 3683927
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3683883-3683927:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3590287-3590512:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3580688-3580874:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3579722-3579812:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3572596-3572733:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3570500-3570618:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3568624-3568873:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3565690-3565808:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3563892-3564002:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3562951-3563029:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3561747-3561908:-1:exon

FBXW11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: FBXW11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: F-box/WD repeat-containing protein 11 isoform X4
translation: MEPDSVIEDKTIELMNTSVMEDQNEDESPKKSTLWQISNGTSSVIVSRKRPSEGNYQKEKDLCIKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENILSYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRPTDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDEKIISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNVPPSAQNETRSPSRTYTYISR
SIO_010081: FBXW11
subclass of: SO_0000673
so part of: FBXW11
location: complement(join(3561747..3561908,3562951..3563029,3563892..3564002,3565690..3565808,3568624..3568873,3570500..3570618,3572596..3572733,3579722..3579812,3580688..3580874,3590287..3590512,3593537..3593599,3683883..3683927))
location: region:3561747-3683927:-1
so has part: feature:3683883-3683927:-1:exon
so has part: feature:3593537-3593599:-1:exon
so has part: feature:3590287-3590512:-1:exon
so has part: feature:3580688-3580874:-1:exon
so has part: feature:3579722-3579812:-1:exon
so has part: feature:3572596-3572733:-1:exon
so has part: feature:3570500-3570618:-1:exon
so has part: feature:3568624-3568873:-1:exon
so has part: feature:3565690-3565808:-1:exon
so has part: feature:3563892-3564002:-1:exon
so has part: feature:3562951-3563029:-1:exon
so has part: feature:3561747-3561908:-1:exon

XP_027376319.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3683883-3683927:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3593537-3593599:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3590287-3590512:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3580688-3580874:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3579722-3579812:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3572596-3572733:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3570500-3570618:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3568624-3568873:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3565690-3565808:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3563892-3564002:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3562951-3563029:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3561747-3561908:-1:exon

FBXW11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: FBXW11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: F-box/WD repeat-containing protein 11 isoform X3
translation: MEPDSVIEDKTIELMCSVPRSLWLGCANLVESMCALSCLQSMPSVRCLQISNGTSSVIVSRKRPSEGNYQKEKDLCIKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENILSYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRPTDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDEKIISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNVPPSAQNETRSPSRTYTYISR
SIO_010081: FBXW11
subclass of: SO_0000673
so part of: FBXW11
location: complement(join(3561747..3561908,3562951..3563029,3563892..3564002,3565690..3565808,3568624..3568873,3570500..3570618,3572596..3572733,3579722..3579812,3580688..3580874,3590287..3590512,3642197..3642298,3683883..3683927))
location: region:3561747-3683927:-1
so has part: feature:3683883-3683927:-1:exon
so has part: feature:3642197-3642298:-1:exon
so has part: feature:3590287-3590512:-1:exon
so has part: feature:3580688-3580874:-1:exon
so has part: feature:3579722-3579812:-1:exon
so has part: feature:3572596-3572733:-1:exon
so has part: feature:3570500-3570618:-1:exon
so has part: feature:3568624-3568873:-1:exon
so has part: feature:3565690-3565808:-1:exon
so has part: feature:3563892-3564002:-1:exon
so has part: feature:3562951-3563029:-1:exon
so has part: feature:3561747-3561908:-1:exon

XP_027376318.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3683883-3683927:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3642197-3642298:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3590287-3590512:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3580688-3580874:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3579722-3579812:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3572596-3572733:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3570500-3570618:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3568624-3568873:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3565690-3565808:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3563892-3564002:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3562951-3563029:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3561747-3561908:-1:exon

FBXW11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: FBXW11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: F-box/WD repeat-containing protein 11 isoform X1
translation: MEPDSVIEDKTIELMCSVPRSLWLGCANLVESMCALSCLQSMPSVRCLQNTSVMEDQNEDESPKKSTLWQISNGTSSVIVSRKRPSEGNYQKEKDLCIKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENILSYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRPTDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDEKIISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNVPPSAQNETRSPSRTYTYISR
SIO_010081: FBXW11
subclass of: SO_0000673
so part of: FBXW11
location: complement(join(3561747..3561908,3562951..3563029,3563892..3564002,3565690..3565808,3568624..3568873,3570500..3570618,3572596..3572733,3579722..3579812,3580688..3580874,3590287..3590512,3593537..3593599,3642197..3642298,3683883..3683927))
location: region:3561747-3683927:-1
so has part: feature:3683883-3683927:-1:exon
so has part: feature:3642197-3642298:-1:exon
so has part: feature:3593537-3593599:-1:exon
so has part: feature:3590287-3590512:-1:exon
so has part: feature:3580688-3580874:-1:exon
so has part: feature:3579722-3579812:-1:exon
so has part: feature:3572596-3572733:-1:exon
so has part: feature:3570500-3570618:-1:exon
so has part: feature:3568624-3568873:-1:exon
so has part: feature:3565690-3565808:-1:exon
so has part: feature:3563892-3564002:-1:exon
so has part: feature:3562951-3563029:-1:exon
so has part: feature:3561747-3561908:-1:exon

XP_027376316.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3683883-3683927:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3642197-3642298:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3593537-3593599:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3590287-3590512:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3580688-3580874:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3579722-3579812:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3572596-3572733:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3570500-3570618:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3568624-3568873:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3565690-3565808:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3563892-3564002:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3562951-3563029:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3561747-3561908:-1:exon

FBXW11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: FBXW11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: F-box/WD repeat-containing protein 11 isoform X1
translation: MEPDSVIEDKTIELMCSVPRSLWLGCANLVESMCALSCLQSMPSVRCLQNTSVMEDQNEDESPKKSTLWQISNGTSSVIVSRKRPSEGNYQKEKDLCIKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENILSYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRPTDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDEKIISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNVPPSAQNETRSPSRTYTYISR
SIO_010081: FBXW11
subclass of: SO_0000673
so part of: FBXW11
location: complement(join(3561747..3561908,3562951..3563029,3563892..3564002,3565690..3565808,3568624..3568873,3570500..3570618,3572596..3572733,3579722..3579812,3580688..3580874,3590287..3590512,3593537..3593599,3642197..3642298,3683883..3683927))
location: region:3561747-3683927:-1
so has part: feature:3683883-3683927:-1:exon
so has part: feature:3642197-3642298:-1:exon
so has part: feature:3593537-3593599:-1:exon
so has part: feature:3590287-3590512:-1:exon
so has part: feature:3580688-3580874:-1:exon
so has part: feature:3579722-3579812:-1:exon
so has part: feature:3572596-3572733:-1:exon
so has part: feature:3570500-3570618:-1:exon
so has part: feature:3568624-3568873:-1:exon
so has part: feature:3565690-3565808:-1:exon
so has part: feature:3563892-3564002:-1:exon
so has part: feature:3562951-3563029:-1:exon
so has part: feature:3561747-3561908:-1:exon

XP_027376323.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3683883-3683927:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3642197-3642298:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3593537-3593599:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3590287-3590512:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3580688-3580874:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3579722-3579812:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3572596-3572733:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3570500-3570618:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3568624-3568873:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3565690-3565808:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3563892-3564002:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3562951-3563029:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3561747-3561908:-1:exon

FBXW11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: FBXW11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: F-box/WD repeat-containing protein 11 isoform X5
translation: MIKFQNTSVMEDQNEDESPKKSTLWQISNGTSSVIVSRKRPSEGNYQKEKDLCIKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENILSYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRPTDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDEKIISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNVPPSAQNETRSPSRTYTYISR
SIO_010081: FBXW11
subclass of: SO_0000673
so part of: FBXW11
location: complement(join(3561747..3561908,3562951..3563029,3563892..3564002,3565690..3565808,3568624..3568873,3570500..3570618,3572596..3572733,3579722..3579812,3580688..3580874,3590287..3590512,3593537..3593599,3643087..3643101))
location: region:3561747-3643101:-1
so has part: feature:3643087-3643101:-1:exon
so has part: feature:3593537-3593599:-1:exon
so has part: feature:3590287-3590512:-1:exon
so has part: feature:3580688-3580874:-1:exon
so has part: feature:3579722-3579812:-1:exon
so has part: feature:3572596-3572733:-1:exon
so has part: feature:3570500-3570618:-1:exon
so has part: feature:3568624-3568873:-1:exon
so has part: feature:3565690-3565808:-1:exon
so has part: feature:3563892-3564002:-1:exon
so has part: feature:3562951-3563029:-1:exon
so has part: feature:3561747-3561908:-1:exon

XP_027376320.1
type: Protein
SIO_000068: ncbiprotein

position:3643101:-1
position: 3643101
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3643087-3643101:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3593537-3593599:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3590287-3590512:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3580688-3580874:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3579722-3579812:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3572596-3572733:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3570500-3570618:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3568624-3568873:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3565690-3565808:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3563892-3564002:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3562951-3563029:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3561747-3561908:-1:exon

FBXW11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: FBXW11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: F-box/WD repeat-containing protein 11 isoform X2
translation: MIKFQCSVPRSLWLGCANLVESMCALSCLQSMPSVRCLQNTSVMEDQNEDESPKKSTLWQISNGTSSVIVSRKRPSEGNYQKEKDLCIKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENILSYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRPTDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDEKIISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNVPPSAQNETRSPSRTYTYISR
SIO_010081: FBXW11
subclass of: SO_0000673
so part of: FBXW11
location: complement(join(3561747..3561908,3562951..3563029,3563892..3564002,3565690..3565808,3568624..3568873,3570500..3570618,3572596..3572733,3579722..3579812,3580688..3580874,3590287..3590512,3593537..3593599,3642197..3642298,3643087..3643101))
location: region:3561747-3643101:-1
so has part: feature:3643087-3643101:-1:exon
so has part: feature:3642197-3642298:-1:exon
so has part: feature:3593537-3593599:-1:exon
so has part: feature:3590287-3590512:-1:exon
so has part: feature:3580688-3580874:-1:exon
so has part: feature:3579722-3579812:-1:exon
so has part: feature:3572596-3572733:-1:exon
so has part: feature:3570500-3570618:-1:exon
so has part: feature:3568624-3568873:-1:exon
so has part: feature:3565690-3565808:-1:exon
so has part: feature:3563892-3564002:-1:exon
so has part: feature:3562951-3563029:-1:exon
so has part: feature:3561747-3561908:-1:exon

XP_027376317.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3643087-3643101:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3642197-3642298:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3593537-3593599:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3590287-3590512:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3580688-3580874:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3579722-3579812:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3572596-3572733:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3570500-3570618:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3568624-3568873:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3565690-3565808:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3563892-3564002:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3562951-3563029:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3561747-3561908:-1:exon

FBXW11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: FBXW11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: F-box/WD repeat-containing protein 11 isoform X6
translation: MEDQNEDESPKKSTLWQISNGTSSVIVSRKRPSEGNYQKEKDLCIKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENILSYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRPTDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDEKIISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNVPPSAQNETRSPSRTYTYISR
SIO_010081: FBXW11
subclass of: SO_0000673
so part of: FBXW11
location: complement(join(3561747..3561908,3562951..3563029,3563892..3564002,3565690..3565808,3568624..3568873,3570500..3570618,3572596..3572733,3579722..3579812,3580688..3580874,3590287..3590512,3593537..3593587))
location: region:3561747-3593587:-1
so has part: feature:3593537-3593587:-1:exon
so has part: feature:3590287-3590512:-1:exon
so has part: feature:3580688-3580874:-1:exon
so has part: feature:3579722-3579812:-1:exon
so has part: feature:3572596-3572733:-1:exon
so has part: feature:3570500-3570618:-1:exon
so has part: feature:3568624-3568873:-1:exon
so has part: feature:3565690-3565808:-1:exon
so has part: feature:3563892-3564002:-1:exon
so has part: feature:3562951-3563029:-1:exon
so has part: feature:3561747-3561908:-1:exon

XP_027376321.1
type: Protein
SIO_000068: ncbiprotein

position:3593587:-1
position: 3593587
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3593537-3593587:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3590287-3590512:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3580688-3580874:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3579722-3579812:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3572596-3572733:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3570500-3570618:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3568624-3568873:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3565690-3565808:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3563892-3564002:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3562951-3563029:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3561747-3561908:-1:exon

FBXW11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: FBXW11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: F-box/WD repeat-containing protein 11 isoform X6
translation: MEDQNEDESPKKSTLWQISNGTSSVIVSRKRPSEGNYQKEKDLCIKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAENILSYLDARSLCAAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERRGWDQYLFKNRPTDGPPNSFYRSLYPKIIQDIETIESNWRCGRHNLQRIQCRSENSKGVYCLQYDDEKIISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNVPPSAQNETRSPSRTYTYISR
SIO_010081: FBXW11
subclass of: SO_0000673
so part of: FBXW11
location: complement(join(3561747..3561908,3562951..3563029,3563892..3564002,3565690..3565808,3568624..3568873,3570500..3570618,3572596..3572733,3579722..3579812,3580688..3580874,3590287..3590512,3593537..3593587))
location: region:3561747-3593587:-1
so has part: feature:3593537-3593587:-1:exon
so has part: feature:3590287-3590512:-1:exon
so has part: feature:3580688-3580874:-1:exon
so has part: feature:3579722-3579812:-1:exon
so has part: feature:3572596-3572733:-1:exon
so has part: feature:3570500-3570618:-1:exon
so has part: feature:3568624-3568873:-1:exon
so has part: feature:3565690-3565808:-1:exon
so has part: feature:3563892-3564002:-1:exon
so has part: feature:3562951-3563029:-1:exon
so has part: feature:3561747-3561908:-1:exon

XP_027376325.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3593537-3593587:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3590287-3590512:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3580688-3580874:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3579722-3579812:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3572596-3572733:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3570500-3570618:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3568624-3568873:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3565690-3565808:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3563892-3564002:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3562951-3563029:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3561747-3561908:-1:exon

LOC113879217
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: LOC113879217
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 3609883..3610656
location: region:3609883-3610656:1
so has part: feature:3609883-3610656:1:exon

113879217
type: Gene
SIO_000068: ncbigene

position:3609883:1
position: 3609883
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3610656:1
position: 3610656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3609883-3610656:1:exon

LOC113879217
type: Exon
subclass of: SO_0000147
RO_0002162: 30522
gene: LOC113879217
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 63 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC113879217
subclass of: SO_0000673
so part of: LOC113879217
location: 3609883..3610656
location: region:3609883-3610656:1
so has part: feature:3609883-3610656:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3609883-3610656:1:exon

LOC113879218
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: LOC113879218
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3684181..3693638
location: region:3684181-3693638:1
so has part: feature:3684181-3693638:1:exon
subclass of: SO_0000011

113879218
type: Gene
SIO_000068: ncbigene

position:3684181:1
position: 3684181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3693638:1
position: 3693638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3684181-3693638:1:exon

LOC113879218
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 30522
nc RNA class: lncRNA
gene: LOC113879218
product: uncharacterized LOC113879218
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 51 samples with support for all annotated introns
transcript id: XR_003507239.1
SIO_010081: LOC113879218
subclass of: SO_0000673
so part of: LOC113879218
location: join(3684181..3684535,3690773..3690893,3693599..3693638)
location: region:3684181-3693638:1
so has part: feature:3684181-3684535:1:exon
so has part: feature:3690773-3690893:1:exon
so has part: feature:3693599-3693638:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3684181-3684535:1:exon

position:3684535:1
position: 3684535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3690773-3690893:1:exon

position:3690773:1
position: 3690773
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3690893:1
position: 3690893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3693599-3693638:1:exon

position:3693599:1
position: 3693599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

STK10
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: STK10
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3725314..3849766)
location: region:3725314-3849766:-1
so has part: feature:3725314-3849766:-1:exon
subclass of: SO_0000010

113879008
type: Gene
SIO_000068: ncbigene

position:3725314:-1
position: 3725314
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3849766:-1
position: 3849766
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3725314-3849766:-1:exon

STK10
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: STK10
product: serine/threonine kinase 10
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 46 ESTs, 2 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 140 samples with support for all annotated introns
transcript id: XM_027520253.1
SIO_010081: STK10
subclass of: SO_0000673
so part of: STK10
location: complement(join(3725314..3727772,3732724..3732837,3735412..3735537,3736037..3736225,3738275..3738399,3740527..3740656,3743672..3743764,3754572..3754751,3755171..3755294,3760632..3760762,3763013..3763555,3765314..3765448,3774952..3775033,3775616..3775810,3776740..3776812,3792548..3792697,3799440..3799488,3824012..3824176,3849362..3849766))
location: region:3725314-3849766:-1
so has part: feature:3849362-3849766:-1:exon
so has part: feature:3824012-3824176:-1:exon
so has part: feature:3799440-3799488:-1:exon
so has part: feature:3792548-3792697:-1:exon
so has part: feature:3776740-3776812:-1:exon
so has part: feature:3775616-3775810:-1:exon
so has part: feature:3774952-3775033:-1:exon
so has part: feature:3765314-3765448:-1:exon
so has part: feature:3763013-3763555:-1:exon
so has part: feature:3760632-3760762:-1:exon
so has part: feature:3755171-3755294:-1:exon
so has part: feature:3754572-3754751:-1:exon
so has part: feature:3743672-3743764:-1:exon
so has part: feature:3740527-3740656:-1:exon
so has part: feature:3738275-3738399:-1:exon
so has part: feature:3736037-3736225:-1:exon
so has part: feature:3735412-3735537:-1:exon
so has part: feature:3732724-3732837:-1:exon
so has part: feature:3725314-3727772:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3849362-3849766:-1:exon

position:3849362:-1
position: 3849362
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3824012-3824176:-1:exon

position:3824012:-1
position: 3824012
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3824176:-1
position: 3824176
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3799440-3799488:-1:exon

position:3799440:-1
position: 3799440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3799488:-1
position: 3799488
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3792548-3792697:-1:exon

position:3792548:-1
position: 3792548
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3792697:-1
position: 3792697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3776740-3776812:-1:exon

position:3776740:-1
position: 3776740
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3776812:-1
position: 3776812
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3775616-3775810:-1:exon

position:3775616:-1
position: 3775616
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3775810:-1
position: 3775810
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3774952-3775033:-1:exon

position:3774952:-1
position: 3774952
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3775033:-1
position: 3775033
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3765314-3765448:-1:exon

position:3765314:-1
position: 3765314
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3765448:-1
position: 3765448
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:3763013-3763555:-1:exon

position:3763013:-1
position: 3763013
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3763555:-1
position: 3763555
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:3760632-3760762:-1:exon

position:3760632:-1
position: 3760632
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3760762:-1
position: 3760762
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:3755171-3755294:-1:exon

position:3755171:-1
position: 3755171
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3755294:-1
position: 3755294
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:3754572-3754751:-1:exon

position:3754572:-1
position: 3754572
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3754751:-1
position: 3754751
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:3743672-3743764:-1:exon

position:3743672:-1
position: 3743672
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3743764:-1
position: 3743764
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:3740527-3740656:-1:exon

position:3740527:-1
position: 3740527
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3740656:-1
position: 3740656
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:3738275-3738399:-1:exon

position:3738275:-1
position: 3738275
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3738399:-1
position: 3738399
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:3736037-3736225:-1:exon

position:3736037:-1
position: 3736037
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3736225:-1
position: 3736225
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:3735412-3735537:-1:exon

position:3735412:-1
position: 3735412
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3735537:-1
position: 3735537
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:3732724-3732837:-1:exon

position:3732724:-1
position: 3732724
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3732837:-1
position: 3732837
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:3725314-3727772:-1:exon

position:3727772:-1
position: 3727772
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

STK10
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: STK10
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/threonine-protein kinase 10
translation: MAFANFRRILRLSTFEKRKSREYEHVRRDLDPNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETNSEEELEDYIVEIEILATCDHPYIVKLLGAYYYDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALTFLHGKKIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSDPPTLLSPSKWSAEFRDFLKTALDKNPETRPSAAQLLEHPFVSSVTSNKALRELVAEAKAEVMEEIEDGRDEGDEEDAVEAASPLENHTRDSSEVSQLSIDADKLLKESPFTPPPPSQPQDGANGPSEPPGHGALPATSPLDVAPGNENGQAVPVPLRKFRPVSMGARIQVSEEKQAADQGGDLSPAASRSQKASQSRPNSSALETLRSELTNGSLELPTPGAQSLSKRDSDCGSVSTSGSTDFGTSLSADMSVNKESGSLSIKDSRLHNKTLKRTRKFVVDGVEVSITTSKIISEDEKKDEEMRFLRRQELRELRLLQKEEHRNQTQLSSKHELQLEQMHKRFEQEINAKKKFFDIELENLERQQKQQVEKMEQDHAVRRREEAKRIRLEQERDYAKFQEQLKLMKKEVKNEVEKLPRQQRKESMKQKMEEHTQKKQLLDRDFVAKQKEDLELAMKRITADNRREICDKERECLMRKQELLRDREAALWEMEEHHLQERHQLVKQQLKDQYFLQRHELLRKHEKEREQMQRYNQRMIEQLKVRQQQEKARLPKIQRSEGKTRMAMYKKSLHINGGGSAAEQREKIKQFSQQEEKRQKAERLQQQQKHENQMRDMLAQCDSNMSELQQLQNEKCHLLIEHETQKLKALDESHNQNLKEWRDKLRPRKKALEEDLNQKKREQEMFFKMNEESECANPTSPNKVTKFFPYSSADAAS
SIO_010081: STK10
subclass of: SO_0000673
so part of: STK10
location: complement(join(3727629..3727772,3732724..3732837,3735412..3735537,3736037..3736225,3738275..3738399,3740527..3740656,3743672..3743764,3754572..3754751,3755171..3755294,3760632..3760762,3763013..3763555,3765314..3765448,3774952..3775033,3775616..3775810,3776740..3776812,3792548..3792697,3799440..3799488,3824012..3824176,3849362..3849517))
location: region:3727629-3849517:-1
so has part: feature:3849362-3849517:-1:exon
so has part: feature:3824012-3824176:-1:exon
so has part: feature:3799440-3799488:-1:exon
so has part: feature:3792548-3792697:-1:exon
so has part: feature:3776740-3776812:-1:exon
so has part: feature:3775616-3775810:-1:exon
so has part: feature:3774952-3775033:-1:exon
so has part: feature:3765314-3765448:-1:exon
so has part: feature:3763013-3763555:-1:exon
so has part: feature:3760632-3760762:-1:exon
so has part: feature:3755171-3755294:-1:exon
so has part: feature:3754572-3754751:-1:exon
so has part: feature:3743672-3743764:-1:exon
so has part: feature:3740527-3740656:-1:exon
so has part: feature:3738275-3738399:-1:exon
so has part: feature:3736037-3736225:-1:exon
so has part: feature:3735412-3735537:-1:exon
so has part: feature:3732724-3732837:-1:exon
so has part: feature:3727629-3727772:-1:exon

XP_027376054.1
type: Protein
SIO_000068: ncbiprotein

position:3727629:-1
position: 3727629
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3849517:-1
position: 3849517
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3849362-3849517:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3824012-3824176:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3799440-3799488:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3792548-3792697:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3776740-3776812:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3775616-3775810:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3774952-3775033:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3765314-3765448:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3763013-3763555:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3760632-3760762:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3755171-3755294:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3754572-3754751:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3743672-3743764:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3740527-3740656:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3738275-3738399:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3736037-3736225:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3735412-3735537:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3732724-3732837:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3727629-3727772:-1:exon

LOC113879010
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: LOC113879010
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3767019..3770764
location: region:3767019-3770764:1
so has part: feature:3767019-3770764:1:exon
subclass of: SO_0000011

113879010
type: Gene
SIO_000068: ncbigene

position:3767019:1
position: 3767019
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3770764:1
position: 3770764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3767019-3770764:1:exon

LOC113879010
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 30522
nc RNA class: lncRNA
gene: LOC113879010
product: uncharacterized LOC113879010
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
transcript id: XR_003507176.1
SIO_010081: LOC113879010
subclass of: SO_0000673
so part of: LOC113879010
location: join(3767019..3768246,3770484..3770764)
location: region:3767019-3770764:1
so has part: feature:3767019-3768246:1:exon
so has part: feature:3770484-3770764:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3767019-3768246:1:exon

position:3768246:1
position: 3768246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3770484-3770764:1:exon

position:3770484:1
position: 3770484
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC113879009
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: LOC113879009
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 3836249..3837501
location: region:3836249-3837501:1
so has part: feature:3836249-3837501:1:exon

113879009
type: Gene
SIO_000068: ncbigene

position:3836249:1
position: 3836249
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3837501:1
position: 3837501
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3836249-3837501:1:exon

LOC113879009
type: Exon
subclass of: SO_0000147
RO_0002162: 30522
gene: LOC113879009
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins, and 79% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC113879009
subclass of: SO_0000673
so part of: LOC113879009
location: 3836249..3836436
location: region:3836249-3836436:1
so has part: feature:3836249-3836436:1:exon

position:3836436:1
position: 3836436
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3836249-3836436:1:exon

LOC113879009
type: Exon
subclass of: SO_0000147
RO_0002162: 30522
gene: LOC113879009
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins, and 79% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC113879009
subclass of: SO_0000673
so part of: LOC113879009
location: 3836584..3837501
location: region:3836584-3837501:1
so has part: feature:3836584-3837501:1:exon

position:3836584:1
position: 3836584
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3836584-3837501:1:exon

EFCAB9
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: EFCAB9
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3860920..3867014
location: region:3860920-3867014:1
so has part: feature:3860920-3867014:1:exon
subclass of: SO_0000010

113879012
type: Gene
SIO_000068: ncbigene

position:3860920:1
position: 3860920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3867014:1
position: 3867014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3860920-3867014:1:exon

EFCAB9
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: EFCAB9
product: EF-hand calcium binding domain 9
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 1 Protein, and 92% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_027520255.1
SIO_010081: EFCAB9
subclass of: SO_0000673
so part of: EFCAB9
location: join(3860920..3861559,3864696..3864844,3865644..3865820,3866794..3867014)
location: region:3860920-3867014:1
so has part: feature:3860920-3861559:1:exon
so has part: feature:3864696-3864844:1:exon
so has part: feature:3865644-3865820:1:exon
so has part: feature:3866794-3867014:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3860920-3861559:1:exon

position:3861559:1
position: 3861559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3864696-3864844:1:exon

position:3864696:1
position: 3864696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3864844:1
position: 3864844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3865644-3865820:1:exon

position:3865644:1
position: 3865644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3865820:1
position: 3865820
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3866794-3867014:1:exon

position:3866794:1
position: 3866794
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

EFCAB9
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: EFCAB9
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: EF-hand calcium-binding domain-containing protein 9
translation: MSDLGRSLLPELFSTQHSSSEAEFSVLLQVARVFGLKGSIMKLKQGSFLWYLYLDKLYCLLSVRNVKALVEYFHLLDVHHKKTLNDVLFYHFLHHVTDLTRNQITVVFNMLDWNTVGEIGFDQFYMLVCILLAQENHLEEQFIFRHSRPVFELLDLDGELKIGPDHLHMYNFLFNIKKQQLRDLYYNFDITGDRLLNYKEFKLFTIFSMDKYQESQKAEKEKKKEKAVLKKKLSQVNESQRESLLGIQPFESISNYNC
SIO_010081: EFCAB9
subclass of: SO_0000673
so part of: EFCAB9
location: join(3861304..3861559,3864696..3864844,3865644..3865820,3866794..3866988)
location: region:3861304-3866988:1
so has part: feature:3861304-3861559:1:exon
so has part: feature:3864696-3864844:1:exon
so has part: feature:3865644-3865820:1:exon
so has part: feature:3866794-3866988:1:exon

XP_027376056.1
type: Protein
SIO_000068: ncbiprotein

position:3861304:1
position: 3861304
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3866988:1
position: 3866988
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3861304-3861559:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3864696-3864844:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3865644-3865820:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3866794-3866988:1:exon

UBTD2
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: UBTD2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3870586..3933535)
location: region:3870586-3933535:-1
so has part: feature:3870586-3933535:-1:exon
subclass of: SO_0000010

113879011
type: Gene
SIO_000068: ncbigene

position:3870586:-1
position: 3870586
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3933535:-1
position: 3933535
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3870586-3933535:-1:exon

UBTD2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: UBTD2
product: ubiquitin domain containing 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 20 ESTs, 2 long SRA reads, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 201 samples with support for all annotated introns
transcript id: XM_027520254.1
SIO_010081: UBTD2
subclass of: SO_0000673
so part of: UBTD2
location: complement(join(3870586..3873087,3895400..3895636,3933307..3933535))
location: region:3870586-3933535:-1
so has part: feature:3933307-3933535:-1:exon
so has part: feature:3895400-3895636:-1:exon
so has part: feature:3870586-3873087:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3933307-3933535:-1:exon

position:3933307:-1
position: 3933307
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3895400-3895636:-1:exon

position:3895400:-1
position: 3895400
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3895636:-1
position: 3895636
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3870586-3873087:-1:exon

position:3873087:-1
position: 3873087
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

UBTD2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: UBTD2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin domain-containing protein 2
translation: MGGCVGAQHDSSGSLNENSEGTGVALGRNQPLKKEKPKWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAHAFESNDHELAQAIIDGANITLPHGALTECYDELGNRYQLPVYCLAPPINMIEEKSDIETLDIPEPPPNSGYESQLRLRLSTGKDLKLVVRSTDTVYHMKRRLHAAEGVEPASQRWFFSGRPLTDKMRLEELKIPKDYVVQVIMSQPLQNPTPVEN
SIO_010081: UBTD2
subclass of: SO_0000673
so part of: UBTD2
location: complement(join(3872690..3873087,3895400..3895636,3933307..3933376))
location: region:3872690-3933376:-1
so has part: feature:3933307-3933376:-1:exon
so has part: feature:3895400-3895636:-1:exon
so has part: feature:3872690-3873087:-1:exon

XP_027376055.1
type: Protein
SIO_000068: ncbiprotein

position:3872690:-1
position: 3872690
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3933376:-1
position: 3933376
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3933307-3933376:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3895400-3895636:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3872690-3873087:-1:exon

LOC113879314
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: LOC113879314
note: Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
so part of: sequence
location: complement(3941134..3941206)
location: region:3941134-3941206:-1
so has part: feature:3941134-3941206:-1:exon

113879314
type: Gene
SIO_000068: ncbigene

position:3941134:-1
position: 3941134
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3941206:-1
position: 3941206
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3941134-3941206:-1:exon

LOC113879314
type: Exon
subclass of: SO_0000147
RO_0002162: 30522
gene: LOC113879314
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
SIO_010081: LOC113879314
subclass of: SO_0000673
so part of: LOC113879314
location: complement(3941134..3941206)
location: region:3941134-3941206:-1
so has part: feature:3941134-3941206:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3941134-3941206:-1:exon

SH3PXD2B
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: SH3PXD2B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3970000..4091988)
location: region:3970000-4091988:-1
so has part: feature:3970000-4091988:-1:exon
subclass of: SO_0000010

113879200
type: Gene
SIO_000068: ncbigene

position:3970000:-1
position: 3970000
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4091988:-1
position: 4091988
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3970000-4091988:-1:exon

SH3PXD2B
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: SH3PXD2B
product: SH3 and PX domains 2B, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 34 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 42 samples with support for all annotated introns
transcript id: XM_027520491.1
SIO_010081: SH3PXD2B
subclass of: SO_0000673
so part of: SH3PXD2B
location: complement(join(3970000..3976432,3989258..3989383,3990255..3990304,3991902..3992128,3995149..3995266,4006054..4006188,4014064..4014089,4021880..4021971,4033833..4033909,4040768..4040843,4057940..4058020,4091873..4091988))
location: region:3970000-4091988:-1
so has part: feature:4091873-4091988:-1:exon
so has part: feature:4057940-4058020:-1:exon
so has part: feature:4040768-4040843:-1:exon
so has part: feature:4033833-4033909:-1:exon
so has part: feature:4021880-4021971:-1:exon
so has part: feature:4014064-4014089:-1:exon
so has part: feature:4006054-4006188:-1:exon
so has part: feature:3995149-3995266:-1:exon
so has part: feature:3991902-3992128:-1:exon
so has part: feature:3990255-3990304:-1:exon
so has part: feature:3989258-3989383:-1:exon
so has part: feature:3970000-3976432:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4091873-4091988:-1:exon

position:4091873:-1
position: 4091873
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4057940-4058020:-1:exon

position:4057940:-1
position: 4057940
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4058020:-1
position: 4058020
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4040768-4040843:-1:exon

position:4040768:-1
position: 4040768
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4040843:-1
position: 4040843
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4033833-4033909:-1:exon

position:4033833:-1
position: 4033833
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4033909:-1
position: 4033909
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4021880-4021971:-1:exon

position:4021880:-1
position: 4021880
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4021971:-1
position: 4021971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4014064-4014089:-1:exon

position:4014064:-1
position: 4014064
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4014089:-1
position: 4014089
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4006054-4006188:-1:exon

position:4006054:-1
position: 4006054
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4006188:-1
position: 4006188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3995149-3995266:-1:exon

position:3995149:-1
position: 3995149
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3995266:-1
position: 3995266
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:3991902-3992128:-1:exon

position:3991902:-1
position: 3991902
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3992128:-1
position: 3992128
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:3990255-3990304:-1:exon

position:3990255:-1
position: 3990255
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3990304:-1
position: 3990304
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:3989258-3989383:-1:exon

position:3989258:-1
position: 3989258
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3989383:-1
position: 3989383
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:3970000-3976432:-1:exon

position:3976432:-1
position: 3976432
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SH3PXD2B
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: SH3PXD2B
product: SH3 and PX domains 2B, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 34 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transcript id: XM_027520489.1
SIO_010081: SH3PXD2B
subclass of: SO_0000673
so part of: SH3PXD2B
location: complement(join(3970000..3976432,3989258..3989383,3990255..3990304,3991902..3992128,3995149..3995266,3998622..3998705,4000278..4000382,4006054..4006188,4014064..4014089,4021880..4021971,4033833..4033909,4040768..4040843,4057940..4058020,4091873..4091988))
location: region:3970000-4091988:-1
so has part: feature:4091873-4091988:-1:exon
so has part: feature:4057940-4058020:-1:exon
so has part: feature:4040768-4040843:-1:exon
so has part: feature:4033833-4033909:-1:exon
so has part: feature:4021880-4021971:-1:exon
so has part: feature:4014064-4014089:-1:exon
so has part: feature:4006054-4006188:-1:exon
so has part: feature:4000278-4000382:-1:exon
so has part: feature:3998622-3998705:-1:exon
so has part: feature:3995149-3995266:-1:exon
so has part: feature:3991902-3992128:-1:exon
so has part: feature:3990255-3990304:-1:exon
so has part: feature:3989258-3989383:-1:exon
so has part: feature:3970000-3976432:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4091873-4091988:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4057940-4058020:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4040768-4040843:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4033833-4033909:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4021880-4021971:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4014064-4014089:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4006054-4006188:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4000278-4000382:-1:exon

position:4000278:-1
position: 4000278
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4000382:-1
position: 4000382
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:3998622-3998705:-1:exon

position:3998622:-1
position: 3998622
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3998705:-1
position: 3998705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:3995149-3995266:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3991902-3992128:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3990255-3990304:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3989258-3989383:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3970000-3976432:-1:exon

SH3PXD2B
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: SH3PXD2B
product: SH3 and PX domains 2B, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 34 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 127 samples with support for all annotated introns
transcript id: XM_027520490.1
SIO_010081: SH3PXD2B
subclass of: SO_0000673
so part of: SH3PXD2B
location: complement(join(3970000..3976432,3989258..3989383,3990255..3990304,3991902..3992128,3995149..3995266,4000278..4000382,4006054..4006188,4014064..4014089,4021880..4021971,4033833..4033909,4040768..4040843,4057940..4058020,4091873..4091987))
location: region:3970000-4091987:-1
so has part: feature:4091873-4091987:-1:exon
so has part: feature:4057940-4058020:-1:exon
so has part: feature:4040768-4040843:-1:exon
so has part: feature:4033833-4033909:-1:exon
so has part: feature:4021880-4021971:-1:exon
so has part: feature:4014064-4014089:-1:exon
so has part: feature:4006054-4006188:-1:exon
so has part: feature:4000278-4000382:-1:exon
so has part: feature:3995149-3995266:-1:exon
so has part: feature:3991902-3992128:-1:exon
so has part: feature:3990255-3990304:-1:exon
so has part: feature:3989258-3989383:-1:exon
so has part: feature:3970000-3976432:-1:exon

position:4091987:-1
position: 4091987
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4091873-4091987:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4057940-4058020:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4040768-4040843:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4033833-4033909:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4021880-4021971:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4014064-4014089:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4006054-4006188:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4000278-4000382:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3995149-3995266:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3991902-3992128:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3990255-3990304:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3989258-3989383:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3970000-3976432:-1:exon

SH3PXD2B
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: SH3PXD2B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SH3 and PX domain-containing protein 2B isoform X3
translation: MPPRRSIVEVKVLDVQKRRVPNKHYVYIIRVTWSSGSTEAIYRRYSKFFDLQMQMLDKFPMEGGQKDPKQRIIPFLPGKILFRRSHIRDVAVKRLIPIDEYCKALIQLPPYISQCDEVLQFFETRPEDLNPPKEEHVGKKKSGGDLTSVDPMVLEQYVVVADYQKQESSEISLSVGQVVDIIEKNESEEKYTVIYPYTARDQDEMNLERGAVVEVIQKNLEGWWKIRYQGKEGWAPASYLRKSSGEPLPPKLAPGSPAHVGVLELDGVSRQQNSVGREKELLNNQRDGRLEGRPVPDGDIRQRSPKMRQRPPPRRDMTIPRGLNLPKPPIPPQVEEEYYTIAEFQTTIPDGISFQAGLKVEVIEKNLSGWWYIQIEDKEGWAPATFIDKYKKTSNASRPNFLAPLPNEVAQLRLGDAAAMENSSGSEASGPSRPLPDAPHSAGDSGTPWAKDWKGGKEVLRKASSDTSSCAGYEEISDPDLEEKPSLPPRKESIIKSEEELQERQRMEQFRGSSPKPPGMILPMIPAKHALPARDSRKAEPKPEKSKLFQLKNETGLECGHRVLAKEVKKPSLRPISKSKAGLPEEKPEAVPQNLFLKSKPQVRPKPAPSPRTEPPQGEDQVDICNLRSKLRPAKSQEKASVDGESSHQAGGGQDGAFSRGFPPGEGPGRAQDRTSKQEGPSPKEAPCRAPPRPAKTTDPVPKATPVPLQEASLQRPVVPPRRPPPPKKTSSSSRPLPEVRGPLPEVRGPLPEVRGPLPEVRGPQRESSEGKAAPAPGRALLVPPKAKPFLSNSSGGQDDMRGKGGLGPRMMGKTGENKEKVAAGPFPSTDGPKDLYVAVANFEGDQDTSSFQEGTVFEVREKNSSGWWFCQVQSGAPSWEGWIPSNYLRKKP
SIO_010081: SH3PXD2B
subclass of: SO_0000673
so part of: SH3PXD2B
location: complement(join(3974834..3976432,3989258..3989383,3990255..3990304,3991902..3992128,3995149..3995266,4006054..4006188,4014064..4014089,4021880..4021971,4033833..4033909,4040768..4040843,4057940..4058020,4091873..4091947))
location: region:3974834-4091947:-1
so has part: feature:4091873-4091947:-1:exon
so has part: feature:4057940-4058020:-1:exon
so has part: feature:4040768-4040843:-1:exon
so has part: feature:4033833-4033909:-1:exon
so has part: feature:4021880-4021971:-1:exon
so has part: feature:4014064-4014089:-1:exon
so has part: feature:4006054-4006188:-1:exon
so has part: feature:3995149-3995266:-1:exon
so has part: feature:3991902-3992128:-1:exon
so has part: feature:3990255-3990304:-1:exon
so has part: feature:3989258-3989383:-1:exon
so has part: feature:3974834-3976432:-1:exon

XP_027376292.1
type: Protein
SIO_000068: ncbiprotein

position:3974834:-1
position: 3974834
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4091947:-1
position: 4091947
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4091873-4091947:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4057940-4058020:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4040768-4040843:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4033833-4033909:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4021880-4021971:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4014064-4014089:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4006054-4006188:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3995149-3995266:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3991902-3992128:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3990255-3990304:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3989258-3989383:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3974834-3976432:-1:exon

SH3PXD2B
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: SH3PXD2B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SH3 and PX domain-containing protein 2B isoform X2
translation: MPPRRSIVEVKVLDVQKRRVPNKHYVYIIRVTWSSGSTEAIYRRYSKFFDLQMQMLDKFPMEGGQKDPKQRIIPFLPGKILFRRSHIRDVAVKRLIPIDEYCKALIQLPPYISQCDEVLQFFETRPEDLNPPKEEHVGKKKSGGDLTSVDPMVLEQYVVVADYQKQESSEISLSVGQVVDIIEKNESGWWFVSTAEEQGWVPATCLEGQDGVQDEFSLQPEEEEKYTVIYPYTARDQDEMNLERGAVVEVIQKNLEGWWKIRYQGKEGWAPASYLRKSSGEPLPPKLAPGSPAHVGVLELDGVSRQQNSVGREKELLNNQRDGRLEGRPVPDGDIRQRSPKMRQRPPPRRDMTIPRGLNLPKPPIPPQVEEEYYTIAEFQTTIPDGISFQAGLKVEVIEKNLSGWWYIQIEDKEGWAPATFIDKYKKTSNASRPNFLAPLPNEVAQLRLGDAAAMENSSGSEASGPSRPLPDAPHSAGDSGTPWAKDWKGGKEVLRKASSDTSSCAGYEEISDPDLEEKPSLPPRKESIIKSEEELQERQRMEQFRGSSPKPPGMILPMIPAKHALPARDSRKAEPKPEKSKLFQLKNETGLECGHRVLAKEVKKPSLRPISKSKAGLPEEKPEAVPQNLFLKSKPQVRPKPAPSPRTEPPQGEDQVDICNLRSKLRPAKSQEKASVDGESSHQAGGGQDGAFSRGFPPGEGPGRAQDRTSKQEGPSPKEAPCRAPPRPAKTTDPVPKATPVPLQEASLQRPVVPPRRPPPPKKTSSSSRPLPEVRGPLPEVRGPLPEVRGPLPEVRGPQRESSEGKAAPAPGRALLVPPKAKPFLSNSSGGQDDMRGKGGLGPRMMGKTGENKEKVAAGPFPSTDGPKDLYVAVANFEGDQDTSSFQEGTVFEVREKNSSGWWFCQVQSGAPSWEGWIPSNYLRKKP
SIO_010081: SH3PXD2B
subclass of: SO_0000673
so part of: SH3PXD2B
location: complement(join(3974834..3976432,3989258..3989383,3990255..3990304,3991902..3992128,3995149..3995266,4000278..4000382,4006054..4006188,4014064..4014089,4021880..4021971,4033833..4033909,4040768..4040843,4057940..4058020,4091873..4091947))
location: region:3974834-4091947:-1
so has part: feature:4091873-4091947:-1:exon
so has part: feature:4057940-4058020:-1:exon
so has part: feature:4040768-4040843:-1:exon
so has part: feature:4033833-4033909:-1:exon
so has part: feature:4021880-4021971:-1:exon
so has part: feature:4014064-4014089:-1:exon
so has part: feature:4006054-4006188:-1:exon
so has part: feature:4000278-4000382:-1:exon
so has part: feature:3995149-3995266:-1:exon
so has part: feature:3991902-3992128:-1:exon
so has part: feature:3990255-3990304:-1:exon
so has part: feature:3989258-3989383:-1:exon
so has part: feature:3974834-3976432:-1:exon

XP_027376291.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4091873-4091947:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4057940-4058020:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4040768-4040843:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4033833-4033909:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4021880-4021971:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4014064-4014089:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4006054-4006188:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4000278-4000382:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3995149-3995266:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3991902-3992128:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3990255-3990304:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3989258-3989383:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3974834-3976432:-1:exon

SH3PXD2B
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: SH3PXD2B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SH3 and PX domain-containing protein 2B isoform X1
translation: MPPRRSIVEVKVLDVQKRRVPNKHYVYIIRVTWSSGSTEAIYRRYSKFFDLQMQMLDKFPMEGGQKDPKQRIIPFLPGKILFRRSHIRDVAVKRLIPIDEYCKALIQLPPYISQCDEVLQFFETRPEDLNPPKEEHVGKKKSGGDLTSVDPMVLEQYVVVADYQKQESSEISLSVGQVVDIIEKNESGWWFVSTAEEQGWVPATCLEGQDGVQDEFSLQPEEVSWRYWSLPQPAGRRRTLGDLYAISWRQEEKYTVIYPYTARDQDEMNLERGAVVEVIQKNLEGWWKIRYQGKEGWAPASYLRKSSGEPLPPKLAPGSPAHVGVLELDGVSRQQNSVGREKELLNNQRDGRLEGRPVPDGDIRQRSPKMRQRPPPRRDMTIPRGLNLPKPPIPPQVEEEYYTIAEFQTTIPDGISFQAGLKVEVIEKNLSGWWYIQIEDKEGWAPATFIDKYKKTSNASRPNFLAPLPNEVAQLRLGDAAAMENSSGSEASGPSRPLPDAPHSAGDSGTPWAKDWKGGKEVLRKASSDTSSCAGYEEISDPDLEEKPSLPPRKESIIKSEEELQERQRMEQFRGSSPKPPGMILPMIPAKHALPARDSRKAEPKPEKSKLFQLKNETGLECGHRVLAKEVKKPSLRPISKSKAGLPEEKPEAVPQNLFLKSKPQVRPKPAPSPRTEPPQGEDQVDICNLRSKLRPAKSQEKASVDGESSHQAGGGQDGAFSRGFPPGEGPGRAQDRTSKQEGPSPKEAPCRAPPRPAKTTDPVPKATPVPLQEASLQRPVVPPRRPPPPKKTSSSSRPLPEVRGPLPEVRGPLPEVRGPLPEVRGPQRESSEGKAAPAPGRALLVPPKAKPFLSNSSGGQDDMRGKGGLGPRMMGKTGENKEKVAAGPFPSTDGPKDLYVAVANFEGDQDTSSFQEGTVFEVREKNSSGWWFCQVQSGAPSWEGWIPSNYLRKKP
SIO_010081: SH3PXD2B
subclass of: SO_0000673
so part of: SH3PXD2B
location: complement(join(3974834..3976432,3989258..3989383,3990255..3990304,3991902..3992128,3995149..3995266,3998622..3998705,4000278..4000382,4006054..4006188,4014064..4014089,4021880..4021971,4033833..4033909,4040768..4040843,4057940..4058020,4091873..4091947))
location: region:3974834-4091947:-1
so has part: feature:4091873-4091947:-1:exon
so has part: feature:4057940-4058020:-1:exon
so has part: feature:4040768-4040843:-1:exon
so has part: feature:4033833-4033909:-1:exon
so has part: feature:4021880-4021971:-1:exon
so has part: feature:4014064-4014089:-1:exon
so has part: feature:4006054-4006188:-1:exon
so has part: feature:4000278-4000382:-1:exon
so has part: feature:3998622-3998705:-1:exon
so has part: feature:3995149-3995266:-1:exon
so has part: feature:3991902-3992128:-1:exon
so has part: feature:3990255-3990304:-1:exon
so has part: feature:3989258-3989383:-1:exon
so has part: feature:3974834-3976432:-1:exon

XP_027376290.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4091873-4091947:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4057940-4058020:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4040768-4040843:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4033833-4033909:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4021880-4021971:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4014064-4014089:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4006054-4006188:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4000278-4000382:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3998622-3998705:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3995149-3995266:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3991902-3992128:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3990255-3990304:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3989258-3989383:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3974834-3976432:-1:exon

NEURL1B
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: NEURL1B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4276576..4321092
location: region:4276576-4321092:1
so has part: feature:4276576-4321092:1:exon
subclass of: SO_0000010

113878861
type: Gene
SIO_000068: ncbigene

position:4276576:1
position: 4276576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4321092:1
position: 4321092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4276576-4321092:1:exon

NEURL1B
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: NEURL1B
product: neuralized E3 ubiquitin protein ligase 1B, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 42 ESTs, 2 long SRA reads, 3 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 67 samples with support for all annotated introns
transcript id: XM_027519994.1
SIO_010081: NEURL1B
subclass of: SO_0000673
so part of: NEURL1B
location: join(4276576..4276778,4298585..4299130,4313241..4313960,4316263..4316388,4316716..4321092)
location: region:4276576-4321092:1
so has part: feature:4276576-4276778:1:exon
so has part: feature:4298585-4299130:1:exon
so has part: feature:4313241-4313960:1:exon
so has part: feature:4316263-4316388:1:exon
so has part: feature:4316716-4321092:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4276576-4276778:1:exon

position:4276778:1
position: 4276778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4298585-4299130:1:exon

position:4298585:1
position: 4298585
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4299130:1
position: 4299130
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4313241-4313960:1:exon

position:4313241:1
position: 4313241
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4313960:1
position: 4313960
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4316263-4316388:1:exon

position:4316263:1
position: 4316263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4316388:1
position: 4316388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4316716-4321092:1:exon

position:4316716:1
position: 4316716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

NEURL1B
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: NEURL1B
product: neuralized E3 ubiquitin protein ligase 1B, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 40 ESTs, 2 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns
transcript id: XM_027519996.1
SIO_010081: NEURL1B
subclass of: SO_0000673
so part of: NEURL1B
location: join(4276579..4276778,4298585..4299130,4316263..4316388,4316716..4321092)
location: region:4276579-4321092:1
so has part: feature:4276579-4276778:1:exon
so has part: feature:4298585-4299130:1:exon
so has part: feature:4316263-4316388:1:exon
so has part: feature:4316716-4321092:1:exon

position:4276579:1
position: 4276579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4276579-4276778:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4298585-4299130:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4316263-4316388:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4316716-4321092:1:exon

NEURL1B
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: NEURL1B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase NEURL1B isoform X1
translation: MGNTVHRTLPESSPPARLLATRPCCGPGPERRPVLGEAPRFHAQAKGKNVRLDGHSRRATRRNSFCNGVTFTQRPIRLYEQVRLRLVAVRPGWSGALRFGFTAHDPSLMSAQDIPKYACPDLVTRPGYWAKALPENLALRDTVLAYWADRHGRVFYSVNDGEPVLFHCGVAVGGPLWALIDVYGITDEVQLLESGFADTLTPARLGQARFSACLPPSSHDAANFDNNELENNQVVAKLGHLALGRAPGPAPADHAAAAIPCGPRERQRPSSSPALLEADLRFHATRGPDVSLSLDRKVACAPRPDGGRTLVFSERPLRPGESLFVEVGRPGLAAPGALAFGITSCDPGGLRPAELPADPDALIDRKEYWVVARAGPVPSGGDALSFTLRPGGDVLLGVNGRPRGRLLCVDTTQALWAFFAVRGGAAGQLRLLGTLQSSPATTSPSGSLSGSQDDSDSDMAFSVNQSSSASESSLVTAPSSPLSPPVSPVSSPPELVGSKSSECTVCFDGEVDTVIYTCGHMCLCHGCGLRLKRQARACCPICRRPIKDVIKTYRP
SIO_010081: NEURL1B
subclass of: SO_0000673
so part of: NEURL1B
location: join(4276748..4276778,4298585..4299130,4313241..4313960,4316263..4316388,4316716..4316960)
location: region:4276748-4316960:1
so has part: feature:4276748-4276778:1:exon
so has part: feature:4298585-4299130:1:exon
so has part: feature:4313241-4313960:1:exon
so has part: feature:4316263-4316388:1:exon
so has part: feature:4316716-4316960:1:exon

XP_027375795.1
type: Protein
SIO_000068: ncbiprotein

position:4276748:1
position: 4276748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4316960:1
position: 4316960
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4276748-4276778:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4298585-4299130:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4313241-4313960:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4316263-4316388:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4316716-4316960:1:exon

NEURL1B
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: NEURL1B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase NEURL1B isoform X2
translation: MGNTVHRTLPESSPPARLLATRPCCGPGPERRPVLGEAPRFHAQAKGKNVRLDGHSRRATRRNSFCNGVTFTQRPIRLYEQVRLRLVAVRPGWSGALRFGFTAHDPSLMSAQDIPKYACPDLVTRPGYWAKALPENLALRDTVLAYWADRHGRVFYSVNDGEPVLFHCGVAVGGPLWALIDVYGITDEVQLLGTLQSSPATTSPSGSLSGSQDDSDSDMAFSVNQSSSASESSLVTAPSSPLSPPVSPVSSPPELVGSKSSECTVCFDGEVDTVIYTCGHMCLCHGCGLRLKRQARACCPICRRPIKDVIKTYRP
SIO_010081: NEURL1B
subclass of: SO_0000673
so part of: NEURL1B
location: join(4276748..4276778,4298585..4299130,4316263..4316388,4316716..4316960)
location: region:4276748-4316960:1
so has part: feature:4276748-4276778:1:exon
so has part: feature:4298585-4299130:1:exon
so has part: feature:4316263-4316388:1:exon
so has part: feature:4316716-4316960:1:exon

XP_027375797.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4276748-4276778:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4298585-4299130:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4316263-4316388:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4316716-4316960:1:exon

DUSP1
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: DUSP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4408962..4412110)
location: region:4408962-4412110:-1
so has part: feature:4408962-4412110:-1:exon
subclass of: SO_0000010

113878954
type: Gene
SIO_000068: ncbigene

position:4408962:-1
position: 4408962
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4412110:-1
position: 4412110
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4408962-4412110:-1:exon

DUSP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: DUSP1
product: dual specificity phosphatase 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 215 ESTs, 2 long SRA reads, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 204 samples with support for all annotated introns
transcript id: XM_027520142.1
SIO_010081: DUSP1
subclass of: SO_0000673
so part of: DUSP1
location: complement(join(4408962..4410014,4410443..4410662,4411034..4411179,4411441..4412110))
location: region:4408962-4412110:-1
so has part: feature:4411441-4412110:-1:exon
so has part: feature:4411034-4411179:-1:exon
so has part: feature:4410443-4410662:-1:exon
so has part: feature:4408962-4410014:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4411441-4412110:-1:exon

position:4411441:-1
position: 4411441
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4411034-4411179:-1:exon

position:4411034:-1
position: 4411034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4411179:-1
position: 4411179
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4410443-4410662:-1:exon

position:4410443:-1
position: 4410443
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4410662:-1
position: 4410662
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4408962-4410014:-1:exon

position:4410014:-1
position: 4410014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

DUSP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: DUSP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: dual specificity protein phosphatase 1
translation: MVMEVVSLDAGGLRTLLRERAAQCLLLDCRSFFAFNAGHIAGSVNVRFSTIVRRRAKGAMGLEHIVPNAELRGRLLAGAYHAVVLLDERSAALDCAKRDGTLALAAGALCREARSAQIFLLKGGYEAFSASYPELCSKQSTPMGLSLPLSTSVPDSAESGCSSCSTPLYDQGGPVEILPFLYLGSAYHASRKDMLDALGITALINVSANCPNHFEGHYQYKSIPVEDNHKADISSWFNEAIDFIDSIKNAGGRVFVHCQAGISRSATICLAYLMRTNRVKLDEAFEFVKQRRSIISPNFSFMGQLLQFESQVLAPHCSAEAGSPAMAVLDCSTSTTTVFNFPVSIPVHPTNSALSYLQSPITTSPSC
SIO_010081: DUSP1
subclass of: SO_0000673
so part of: DUSP1
location: complement(join(4409644..4410014,4410443..4410662,4411034..4411179,4411441..4411807))
location: region:4409644-4411807:-1
so has part: feature:4411441-4411807:-1:exon
so has part: feature:4411034-4411179:-1:exon
so has part: feature:4410443-4410662:-1:exon
so has part: feature:4409644-4410014:-1:exon

XP_027375943.1
type: Protein
SIO_000068: ncbiprotein

position:4409644:-1
position: 4409644
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4411807:-1
position: 4411807
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4411441-4411807:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4411034-4411179:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4410443-4410662:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4409644-4410014:-1:exon

LOC113879140
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: LOC113879140
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4421644..4428238)
location: region:4421644-4428238:-1
so has part: feature:4421644-4428238:-1:exon
subclass of: SO_0000011

113879140
type: Gene
SIO_000068: ncbigene

position:4421644:-1
position: 4421644
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4428238:-1
position: 4428238
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4421644-4428238:-1:exon

LOC113879140
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 30522
nc RNA class: lncRNA
gene: LOC113879140
product: uncharacterized LOC113879140
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XR_003507214.1
SIO_010081: LOC113879140
subclass of: SO_0000673
so part of: LOC113879140
location: complement(join(4421644..4424921,4428203..4428238))
location: region:4421644-4428238:-1
so has part: feature:4428203-4428238:-1:exon
so has part: feature:4421644-4424921:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4428203-4428238:-1:exon

position:4428203:-1
position: 4428203
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4421644-4424921:-1:exon

position:4424921:-1
position: 4424921
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ERGIC1
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: ERGIC1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4464701..4578071
location: region:4464701-4578071:1
so has part: feature:4464701-4578071:1:exon
subclass of: SO_0000010

113879236
type: Gene
SIO_000068: ncbigene

position:4464701:1
position: 4464701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4578071:1
position: 4578071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4464701-4578071:1:exon

ERGIC1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: ERGIC1
product: endoplasmic reticulum-golgi intermediate compartment 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 83 ESTs, 2 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 116 samples with support for all annotated introns
transcript id: XM_027520536.1
SIO_010081: ERGIC1
subclass of: SO_0000673
so part of: ERGIC1
location: join(4464701..4465083,4518375..4518436,4525580..4525652,4536057..4536151,4540322..4540446,4552866..4552970,4557667..4557727,4562417..4562517,4565246..4565368,4576193..4578071)
location: region:4464701-4578071:1
so has part: feature:4464701-4465083:1:exon
so has part: feature:4518375-4518436:1:exon
so has part: feature:4525580-4525652:1:exon
so has part: feature:4536057-4536151:1:exon
so has part: feature:4540322-4540446:1:exon
so has part: feature:4552866-4552970:1:exon
so has part: feature:4557667-4557727:1:exon
so has part: feature:4562417-4562517:1:exon
so has part: feature:4565246-4565368:1:exon
so has part: feature:4576193-4578071:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4464701-4465083:1:exon

position:4465083:1
position: 4465083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4518375-4518436:1:exon

position:4518375:1
position: 4518375
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4518436:1
position: 4518436
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4525580-4525652:1:exon

position:4525580:1
position: 4525580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4525652:1
position: 4525652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4536057-4536151:1:exon

position:4536057:1
position: 4536057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4536151:1
position: 4536151
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4540322-4540446:1:exon

position:4540322:1
position: 4540322
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4540446:1
position: 4540446
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4552866-4552970:1:exon

position:4552866:1
position: 4552866
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4552970:1
position: 4552970
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4557667-4557727:1:exon

position:4557667:1
position: 4557667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4557727:1
position: 4557727
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4562417-4562517:1:exon

position:4562417:1
position: 4562417
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4562517:1
position: 4562517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:4565246-4565368:1:exon

position:4565246:1
position: 4565246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4565368:1
position: 4565368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:4576193-4578071:1:exon

position:4576193:1
position: 4576193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ERGIC1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: ERGIC1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: endoplasmic reticulum-Golgi intermediate compartment protein 1 isoform X1
translation: MNNCIFGCSLPLQASSPTARPAKARPSVPAPSPLPQPPGPFNGAAEGAAGGGGGAQCVERSVTSRRLEAAASVGGEGRPAGAGRPEAALAAGWDPRGAAAHLACSAPIPGGGGDGTMPFDFRRFDIYRKVPKDLTQPTYTGAIISVCCCLFILFLFLSELTGFITTEIVNELYVDDPDKDSGGKIDVSLNISLPNLHCELVGLDIQDEMGRHEVGHIDNSMKIPLNNGVGCRFEGQFSINKVPGNFHVSTHSATAQPQNPDMTHIIHKLSFGDTLQVHNVHGAFNALGGADRLTSNPLASHDYILKIVPTVYEDKSGKQQFSYQYTVANKEYVAYSHTGRIIPAIWFRYDLSPITVKYTERRQPLYRFITTICAIIGGTFTVAGILDSCIFTASEAWKKIQLGKMH
SIO_010081: ERGIC1
subclass of: SO_0000673
so part of: ERGIC1
location: join(4464716..4465083,4518375..4518436,4525580..4525652,4536057..4536151,4540322..4540446,4552866..4552970,4557667..4557727,4562417..4562517,4565246..4565368,4576193..4576300)
location: region:4464716-4576300:1
so has part: feature:4464716-4465083:1:exon
so has part: feature:4518375-4518436:1:exon
so has part: feature:4525580-4525652:1:exon
so has part: feature:4536057-4536151:1:exon
so has part: feature:4540322-4540446:1:exon
so has part: feature:4552866-4552970:1:exon
so has part: feature:4557667-4557727:1:exon
so has part: feature:4562417-4562517:1:exon
so has part: feature:4565246-4565368:1:exon
so has part: feature:4576193-4576300:1:exon

XP_027376337.1
type: Protein
SIO_000068: ncbiprotein

position:4464716:1
position: 4464716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4576300:1
position: 4576300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4464716-4465083:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4518375-4518436:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4525580-4525652:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4536057-4536151:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4540322-4540446:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4552866-4552970:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4557667-4557727:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4562417-4562517:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4565246-4565368:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4576193-4576300:1:exon

TRNAG-CCC
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: TRNAG-CCC
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(4495752..4495824)
location: region:4495752-4495824:-1
so has part: feature:4495752-4495824:-1:exon
subclass of: SO_0000663

113879339
type: Gene
SIO_000068: ncbigene

position:4495752:-1
position: 4495752
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4495824:-1
position: 4495824
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4495752-4495824:-1:exon

TRNAG-CCC
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 30522
gene: TRNAG-CCC
product: tRNA-Gly
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA glycine (anticodon CCC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(4495789..4495791),aa:Gly, seq:ccc)
SIO_010081: TRNAG-CCC
subclass of: SO_0000673
so part of: TRNAG-CCC
location: complement(4495752..4495824)
location: region:4495752-4495824:-1
so has part: feature:4495752-4495824:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4495752-4495824:-1:exon

ERGIC1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: ERGIC1
product: endoplasmic reticulum-golgi intermediate compartment 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 83 ESTs, 2 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns
transcript id: XM_027520537.1
SIO_010081: ERGIC1
subclass of: SO_0000673
so part of: ERGIC1
location: join(4497513..4497559,4518375..4518436,4525580..4525652,4536057..4536151,4540322..4540446,4552866..4552970,4557667..4557727,4562417..4562517,4565246..4565368,4576193..4578071)
location: region:4497513-4578071:1
so has part: feature:4497513-4497559:1:exon
so has part: feature:4518375-4518436:1:exon
so has part: feature:4525580-4525652:1:exon
so has part: feature:4536057-4536151:1:exon
so has part: feature:4540322-4540446:1:exon
so has part: feature:4552866-4552970:1:exon
so has part: feature:4557667-4557727:1:exon
so has part: feature:4562417-4562517:1:exon
so has part: feature:4565246-4565368:1:exon
so has part: feature:4576193-4578071:1:exon

position:4497513:1
position: 4497513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4497513-4497559:1:exon

position:4497559:1
position: 4497559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4518375-4518436:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4525580-4525652:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4536057-4536151:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4540322-4540446:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4552866-4552970:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4557667-4557727:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4562417-4562517:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4565246-4565368:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4576193-4578071:1:exon

ERGIC1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: ERGIC1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: endoplasmic reticulum-Golgi intermediate compartment protein 1 isoform X2
translation: MVQKERPGRERFDIYRKVPKDLTQPTYTGAIISVCCCLFILFLFLSELTGFITTEIVNELYVDDPDKDSGGKIDVSLNISLPNLHCELVGLDIQDEMGRHEVGHIDNSMKIPLNNGVGCRFEGQFSINKVPGNFHVSTHSATAQPQNPDMTHIIHKLSFGDTLQVHNVHGAFNALGGADRLTSNPLASHDYILKIVPTVYEDKSGKQQFSYQYTVANKEYVAYSHTGRIIPAIWFRYDLSPITVKYTERRQPLYRFITTICAIIGGTFTVAGILDSCIFTASEAWKKIQLGKMH
SIO_010081: ERGIC1
subclass of: SO_0000673
so part of: ERGIC1
location: join(4497528..4497559,4518375..4518436,4525580..4525652,4536057..4536151,4540322..4540446,4552866..4552970,4557667..4557727,4562417..4562517,4565246..4565368,4576193..4576300)
location: region:4497528-4576300:1
so has part: feature:4497528-4497559:1:exon
so has part: feature:4518375-4518436:1:exon
so has part: feature:4525580-4525652:1:exon
so has part: feature:4536057-4536151:1:exon
so has part: feature:4540322-4540446:1:exon
so has part: feature:4552866-4552970:1:exon
so has part: feature:4557667-4557727:1:exon
so has part: feature:4562417-4562517:1:exon
so has part: feature:4565246-4565368:1:exon
so has part: feature:4576193-4576300:1:exon

XP_027376338.1
type: Protein
SIO_000068: ncbiprotein

position:4497528:1
position: 4497528
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4497528-4497559:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4518375-4518436:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4525580-4525652:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4536057-4536151:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4540322-4540446:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4552866-4552970:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4557667-4557727:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4562417-4562517:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4565246-4565368:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4576193-4576300:1:exon

RPL26L1
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: RPL26L1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4585351..4592253
location: region:4585351-4592253:1
so has part: feature:4585351-4592253:1:exon
subclass of: SO_0000010

113878837
type: Gene
SIO_000068: ncbigene

position:4585351:1
position: 4585351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4592253:1
position: 4592253
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4585351-4592253:1:exon

RPL26L1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: RPL26L1
product: ribosomal protein L26 like 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 26 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_027519941.1
SIO_010081: RPL26L1
subclass of: SO_0000673
so part of: RPL26L1
location: join(4585351..4585649,4586038..4586214,4591077..4591216,4591558..4591567,4591935..4592253)
location: region:4585351-4592253:1
so has part: feature:4585351-4585649:1:exon
so has part: feature:4586038-4586214:1:exon
so has part: feature:4591077-4591216:1:exon
so has part: feature:4591558-4591567:1:exon
so has part: feature:4591935-4592253:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4585351-4585649:1:exon

position:4585649:1
position: 4585649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4586038-4586214:1:exon

position:4586038:1
position: 4586038
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4586214:1
position: 4586214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4591077-4591216:1:exon

position:4591077:1
position: 4591077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4591216:1
position: 4591216
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4591558-4591567:1:exon

position:4591558:1
position: 4591558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4591567:1
position: 4591567
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4591935-4592253:1:exon

position:4591935:1
position: 4591935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

RPL26L1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: RPL26L1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 60S ribosomal protein L26-like 1
translation: MGMEHCFLSALAQQGSLASVPTRASSELGGRSTNTMKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYTKKYVIHIERVQREKADGTTVHVGLHPSSLYAVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEELIEKMQE
SIO_010081: RPL26L1
subclass of: SO_0000673
so part of: RPL26L1
location: join(4585554..4585649,4586038..4586214,4591077..4591216,4591558..4591567,4591935..4592063)
location: region:4585554-4592063:1
so has part: feature:4585554-4585649:1:exon
so has part: feature:4586038-4586214:1:exon
so has part: feature:4591077-4591216:1:exon
so has part: feature:4591558-4591567:1:exon
so has part: feature:4591935-4592063:1:exon

XP_027375742.1
type: Protein
SIO_000068: ncbiprotein

position:4585554:1
position: 4585554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4592063:1
position: 4592063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4585554-4585649:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4586038-4586214:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4591077-4591216:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4591558-4591567:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4591935-4592063:1:exon

LOC113878918
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: LOC113878918
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4598599..4601048)
location: region:4598599-4601048:-1
so has part: feature:4598599-4601048:-1:exon
subclass of: SO_0000011

113878918
type: Gene
SIO_000068: ncbigene

position:4598599:-1
position: 4598599
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4601048:-1
position: 4601048
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4598599-4601048:-1:exon

LOC113878918
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 30522
nc RNA class: lncRNA
gene: LOC113878918
product: uncharacterized LOC113878918
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_003507164.1
SIO_010081: LOC113878918
subclass of: SO_0000673
so part of: LOC113878918
location: complement(join(4598599..4598902,4600065..4600152,4600490..4600740,4600864..4601048))
location: region:4598599-4601048:-1
so has part: feature:4600864-4601048:-1:exon
so has part: feature:4600490-4600740:-1:exon
so has part: feature:4600065-4600152:-1:exon
so has part: feature:4598599-4598902:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4600864-4601048:-1:exon

position:4600864:-1
position: 4600864
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4600490-4600740:-1:exon

position:4600490:-1
position: 4600490
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4600740:-1
position: 4600740
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4600065-4600152:-1:exon

position:4600065:-1
position: 4600065
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4600152:-1
position: 4600152
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4598599-4598902:-1:exon

position:4598902:-1
position: 4598902
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ATP6V0E1
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: ATP6V0E1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4601094..4631148
location: region:4601094-4631148:1
so has part: feature:4601094-4631148:1:exon
subclass of: SO_0000010

113878917
type: Gene
SIO_000068: ncbigene

position:4601094:1
position: 4601094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4631148:1
position: 4631148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4601094-4631148:1:exon

ATP6V0E1
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 30522
gene: ATP6V0E1
product: ATPase H+ transporting V0 subunit e1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 ESTs, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 119 samples with support for all annotated introns
transcript id: XR_003507162.1
SIO_010081: ATP6V0E1
so part of: ATP6V0E1
location: join(4601094..4601289,4608017..4608064,4611859..4611958,4623208..4623337,4630658..4631148)
location: region:4601094-4631148:1
so has part: feature:4601094-4601289:1:exon
so has part: feature:4608017-4608064:1:exon
so has part: feature:4611859-4611958:1:exon
so has part: feature:4623208-4623337:1:exon
so has part: feature:4630658-4631148:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4601094-4601289:1:exon

position:4601289:1
position: 4601289
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4608017-4608064:1:exon

position:4608017:1
position: 4608017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4608064:1
position: 4608064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4611859-4611958:1:exon

position:4611859:1
position: 4611859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4611958:1
position: 4611958
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4623208-4623337:1:exon

position:4623208:1
position: 4623208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4623337:1
position: 4623337
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4630658-4631148:1:exon

position:4630658:1
position: 4630658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ATP6V0E1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: ATP6V0E1
product: ATPase H+ transporting V0 subunit e1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 22 ESTs, 1 long SRA read, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 216 samples with support for all annotated introns
transcript id: XM_027520092.1
SIO_010081: ATP6V0E1
subclass of: SO_0000673
so part of: ATP6V0E1
location: join(4601102..4601289,4608017..4608064,4623208..4623337,4630658..4631148)
location: region:4601102-4631148:1
so has part: feature:4601102-4601289:1:exon
so has part: feature:4608017-4608064:1:exon
so has part: feature:4623208-4623337:1:exon
so has part: feature:4630658-4631148:1:exon

position:4601102:1
position: 4601102
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4601102-4601289:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4608017-4608064:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4623208-4623337:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4630658-4631148:1:exon

ATP6V0E1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: ATP6V0E1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: V-type proton ATPase subunit e 1
translation: MAYTGLTVPLIVMSVFWGIVGFLVPWFIPKGPNRGVIITMLVTCSVCCYLFWLIAILAQLNPLFGPQLKNETIWYLKYHWP
SIO_010081: ATP6V0E1
subclass of: SO_0000673
so part of: ATP6V0E1
location: join(4601186..4601289,4608017..4608064,4623208..4623301)
location: region:4601186-4623301:1
so has part: feature:4601186-4601289:1:exon
so has part: feature:4608017-4608064:1:exon
so has part: feature:4623208-4623301:1:exon

XP_027375893.1
type: Protein
SIO_000068: ncbiprotein

position:4601186:1
position: 4601186
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4623301:1
position: 4623301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4601186-4601289:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4608017-4608064:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4623208-4623301:1:exon

CREBRF
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: CREBRF
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4645128..4705927
location: region:4645128-4705927:1
so has part: feature:4645128-4705927:1:exon
subclass of: SO_0000010

113879259
type: Gene
SIO_000068: ncbigene

position:4645128:1
position: 4645128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4705927:1
position: 4705927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4645128-4705927:1:exon

CREBRF
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: CREBRF
product: CREB3 regulatory factor, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 72 ESTs, 2 long SRA reads, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 171 samples with support for all annotated introns
transcript id: XM_027520579.1
SIO_010081: CREBRF
subclass of: SO_0000673
so part of: CREBRF
location: join(4645128..4645251,4668345..4668540,4670664..4670789,4672231..4673317,4679602..4679796,4681748..4681937,4683359..4683432,4693076..4693198,4700259..4705927)
location: region:4645128-4705927:1
so has part: feature:4645128-4645251:1:exon
so has part: feature:4668345-4668540:1:exon
so has part: feature:4670664-4670789:1:exon
so has part: feature:4672231-4673317:1:exon
so has part: feature:4679602-4679796:1:exon
so has part: feature:4681748-4681937:1:exon
so has part: feature:4683359-4683432:1:exon
so has part: feature:4693076-4693198:1:exon
so has part: feature:4700259-4705927:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4645128-4645251:1:exon

position:4645251:1
position: 4645251
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4668345-4668540:1:exon

position:4668345:1
position: 4668345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4668540:1
position: 4668540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4670664-4670789:1:exon

position:4670664:1
position: 4670664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4670789:1
position: 4670789
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4672231-4673317:1:exon

position:4672231:1
position: 4672231
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4673317:1
position: 4673317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4679602-4679796:1:exon

position:4679602:1
position: 4679602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4679796:1
position: 4679796
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4681748-4681937:1:exon

position:4681748:1
position: 4681748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4681937:1
position: 4681937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4683359-4683432:1:exon

position:4683359:1
position: 4683359
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4683432:1
position: 4683432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4693076-4693198:1:exon

position:4693076:1
position: 4693076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4693198:1
position: 4693198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:4700259-4705927:1:exon

position:4700259:1
position: 4700259
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CREBRF
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: CREBRF
product: CREB3 regulatory factor, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 72 ESTs, 1 long SRA read, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 85 samples with support for all annotated introns
transcript id: XM_027520580.1
SIO_010081: CREBRF
subclass of: SO_0000673
so part of: CREBRF
location: join(4646128..4646804,4668345..4668540,4670664..4670789,4672231..4673317,4679602..4679796,4681748..4681937,4683359..4683432,4693076..4693198,4700259..4705927)
location: region:4646128-4705927:1
so has part: feature:4646128-4646804:1:exon
so has part: feature:4668345-4668540:1:exon
so has part: feature:4670664-4670789:1:exon
so has part: feature:4672231-4673317:1:exon
so has part: feature:4679602-4679796:1:exon
so has part: feature:4681748-4681937:1:exon
so has part: feature:4683359-4683432:1:exon
so has part: feature:4693076-4693198:1:exon
so has part: feature:4700259-4705927:1:exon

position:4646128:1
position: 4646128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4646128-4646804:1:exon

position:4646804:1
position: 4646804
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4668345-4668540:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4670664-4670789:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4672231-4673317:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4679602-4679796:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4681748-4681937:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4683359-4683432:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4693076-4693198:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4700259-4705927:1:exon

CREBRF
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: CREBRF
product: CREB3 regulatory factor, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 72 ESTs, 1 long SRA read, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns
transcript id: XM_027520581.1
SIO_010081: CREBRF
subclass of: SO_0000673
so part of: CREBRF
location: join(4667840..4668257,4668345..4668540,4670664..4670789,4672231..4673317,4679602..4679796,4681748..4681937,4683359..4683432,4693076..4693198,4700259..4705927)
location: region:4667840-4705927:1
so has part: feature:4667840-4668257:1:exon
so has part: feature:4668345-4668540:1:exon
so has part: feature:4670664-4670789:1:exon
so has part: feature:4672231-4673317:1:exon
so has part: feature:4679602-4679796:1:exon
so has part: feature:4681748-4681937:1:exon
so has part: feature:4683359-4683432:1:exon
so has part: feature:4693076-4693198:1:exon
so has part: feature:4700259-4705927:1:exon

position:4667840:1
position: 4667840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4667840-4668257:1:exon

position:4668257:1
position: 4668257
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4668345-4668540:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4670664-4670789:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4672231-4673317:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4679602-4679796:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4681748-4681937:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4683359-4683432:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4693076-4693198:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4700259-4705927:1:exon

CREBRF
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: CREBRF
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: CREB3 regulatory factor
translation: MPQPSVSGMDPPFGDAFRSHTFSEQTLMSTDLLANSSDPDFMYELDREMNYQQNPRDNFLSLEDCKDIENLESFTDVLDNEGTLTSNWEQWDTYCEDLTKYTKLTSCDIWGTKEVDYLGLDDFSSPYQDEEVISKTPTLAQLNSEDSQSVSDSLYYPDSLFSVKQNPLASSFPGKKITSRAAAPVCSSKTLQAEVPLSDCVQKASKPTSSTQIMVKTNMYHNEKVNFHVECKDYVKKAKVKINPVQQSRPLLSQVHADAAKENTCYCGAVAKRPEKKGTEPLQGHATPALPFKETQELLLSPLPQEGPGSVAAGESSSLSASTSVSDSSQKKEEHNYSLFVSDNLGEQPTKCSPEEDEEDEEDVDDEDHDEGFGSEHELSENEEEEEEEEDYEDDKDDDISDTFSEPGYENDSVEDLKEMTSVTSRKRGKRRYFWEYSEQLTPSQQERMLRPSEWNRETLPSNMYQKNGLHHGKYAVKKSRRTDVEDLTPNPKKLLQIGNELRKLNKVISDLTPVSELPLTARPRSRKEKNKLASRACRLKKKAQYEANKVKLWGLNTEYDNLLFVINSIKQEIVNRVQSPREERGPNMGQKLEILIKDTLGLPVAGQTSEFVNQVLEKTAEGNPTGGLVGLRIPTSKV
SIO_010081: CREBRF
subclass of: SO_0000673
so part of: CREBRF
location: join(4668532..4668540,4670664..4670789,4672231..4673317,4679602..4679796,4681748..4681937,4683359..4683432,4693076..4693198,4700259..4700374)
location: region:4668532-4700374:1
so has part: feature:4668532-4668540:1:exon
so has part: feature:4670664-4670789:1:exon
so has part: feature:4672231-4673317:1:exon
so has part: feature:4679602-4679796:1:exon
so has part: feature:4681748-4681937:1:exon
so has part: feature:4683359-4683432:1:exon
so has part: feature:4693076-4693198:1:exon
so has part: feature:4700259-4700374:1:exon

XP_027376380.1
type: Protein
SIO_000068: ncbiprotein

position:4668532:1
position: 4668532
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4700374:1
position: 4700374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4668532-4668540:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4670664-4670789:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4672231-4673317:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4679602-4679796:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4681748-4681937:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4683359-4683432:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4693076-4693198:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4700259-4700374:1:exon

CREBRF
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: CREBRF
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: CREB3 regulatory factor
translation: MPQPSVSGMDPPFGDAFRSHTFSEQTLMSTDLLANSSDPDFMYELDREMNYQQNPRDNFLSLEDCKDIENLESFTDVLDNEGTLTSNWEQWDTYCEDLTKYTKLTSCDIWGTKEVDYLGLDDFSSPYQDEEVISKTPTLAQLNSEDSQSVSDSLYYPDSLFSVKQNPLASSFPGKKITSRAAAPVCSSKTLQAEVPLSDCVQKASKPTSSTQIMVKTNMYHNEKVNFHVECKDYVKKAKVKINPVQQSRPLLSQVHADAAKENTCYCGAVAKRPEKKGTEPLQGHATPALPFKETQELLLSPLPQEGPGSVAAGESSSLSASTSVSDSSQKKEEHNYSLFVSDNLGEQPTKCSPEEDEEDEEDVDDEDHDEGFGSEHELSENEEEEEEEEDYEDDKDDDISDTFSEPGYENDSVEDLKEMTSVTSRKRGKRRYFWEYSEQLTPSQQERMLRPSEWNRETLPSNMYQKNGLHHGKYAVKKSRRTDVEDLTPNPKKLLQIGNELRKLNKVISDLTPVSELPLTARPRSRKEKNKLASRACRLKKKAQYEANKVKLWGLNTEYDNLLFVINSIKQEIVNRVQSPREERGPNMGQKLEILIKDTLGLPVAGQTSEFVNQVLEKTAEGNPTGGLVGLRIPTSKV
SIO_010081: CREBRF
subclass of: SO_0000673
so part of: CREBRF
location: join(4668532..4668540,4670664..4670789,4672231..4673317,4679602..4679796,4681748..4681937,4683359..4683432,4693076..4693198,4700259..4700374)
location: region:4668532-4700374:1
so has part: feature:4668532-4668540:1:exon
so has part: feature:4670664-4670789:1:exon
so has part: feature:4672231-4673317:1:exon
so has part: feature:4679602-4679796:1:exon
so has part: feature:4681748-4681937:1:exon
so has part: feature:4683359-4683432:1:exon
so has part: feature:4693076-4693198:1:exon
so has part: feature:4700259-4700374:1:exon

XP_027376381.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4668532-4668540:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4670664-4670789:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4672231-4673317:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4679602-4679796:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4681748-4681937:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4683359-4683432:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4693076-4693198:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4700259-4700374:1:exon

CREBRF
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: CREBRF
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: CREB3 regulatory factor
translation: MPQPSVSGMDPPFGDAFRSHTFSEQTLMSTDLLANSSDPDFMYELDREMNYQQNPRDNFLSLEDCKDIENLESFTDVLDNEGTLTSNWEQWDTYCEDLTKYTKLTSCDIWGTKEVDYLGLDDFSSPYQDEEVISKTPTLAQLNSEDSQSVSDSLYYPDSLFSVKQNPLASSFPGKKITSRAAAPVCSSKTLQAEVPLSDCVQKASKPTSSTQIMVKTNMYHNEKVNFHVECKDYVKKAKVKINPVQQSRPLLSQVHADAAKENTCYCGAVAKRPEKKGTEPLQGHATPALPFKETQELLLSPLPQEGPGSVAAGESSSLSASTSVSDSSQKKEEHNYSLFVSDNLGEQPTKCSPEEDEEDEEDVDDEDHDEGFGSEHELSENEEEEEEEEDYEDDKDDDISDTFSEPGYENDSVEDLKEMTSVTSRKRGKRRYFWEYSEQLTPSQQERMLRPSEWNRETLPSNMYQKNGLHHGKYAVKKSRRTDVEDLTPNPKKLLQIGNELRKLNKVISDLTPVSELPLTARPRSRKEKNKLASRACRLKKKAQYEANKVKLWGLNTEYDNLLFVINSIKQEIVNRVQSPREERGPNMGQKLEILIKDTLGLPVAGQTSEFVNQVLEKTAEGNPTGGLVGLRIPTSKV
SIO_010081: CREBRF
subclass of: SO_0000673
so part of: CREBRF
location: join(4668532..4668540,4670664..4670789,4672231..4673317,4679602..4679796,4681748..4681937,4683359..4683432,4693076..4693198,4700259..4700374)
location: region:4668532-4700374:1
so has part: feature:4668532-4668540:1:exon
so has part: feature:4670664-4670789:1:exon
so has part: feature:4672231-4673317:1:exon
so has part: feature:4679602-4679796:1:exon
so has part: feature:4681748-4681937:1:exon
so has part: feature:4683359-4683432:1:exon
so has part: feature:4693076-4693198:1:exon
so has part: feature:4700259-4700374:1:exon

XP_027376382.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4668532-4668540:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4670664-4670789:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4672231-4673317:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4679602-4679796:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4681748-4681937:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4683359-4683432:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4693076-4693198:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4700259-4700374:1:exon

LOC113879260
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: LOC113879260
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4705423..4709338)
location: region:4705423-4709338:-1
so has part: feature:4705423-4709338:-1:exon
subclass of: SO_0000011

113879260
type: Gene
SIO_000068: ncbigene

position:4705423:-1
position: 4705423
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4709338:-1
position: 4709338
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4705423-4709338:-1:exon

LOC113879260
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 30522
nc RNA class: lncRNA
gene: LOC113879260
product: uncharacterized LOC113879260
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 ESTs, and 84% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XR_003507254.1
SIO_010081: LOC113879260
subclass of: SO_0000673
so part of: LOC113879260
location: complement(join(4705423..4706936,4708933..4709338))
location: region:4705423-4709338:-1
so has part: feature:4708933-4709338:-1:exon
so has part: feature:4705423-4706936:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4708933-4709338:-1:exon

position:4708933:-1
position: 4708933
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4705423-4706936:-1:exon

position:4706936:-1
position: 4706936
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

BNIP1
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: BNIP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4709810..4722893
location: region:4709810-4722893:1
so has part: feature:4709810-4722893:1:exon
subclass of: SO_0000010

113878945
type: Gene
SIO_000068: ncbigene

position:4709810:1
position: 4709810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4722893:1
position: 4722893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4709810-4722893:1:exon

BNIP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: BNIP1
product: BCL2 interacting protein 1
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 204 samples with support for all annotated introns
transcript id: XM_027520129.1
SIO_010081: BNIP1
subclass of: SO_0000673
so part of: BNIP1
location: join(4709810..4710256,4712400..4712492,4713740..4713831,4717219..4717320,4718943..4719061,4722599..4722893)
location: region:4709810-4722893:1
so has part: feature:4709810-4710256:1:exon
so has part: feature:4712400-4712492:1:exon
so has part: feature:4713740-4713831:1:exon
so has part: feature:4717219-4717320:1:exon
so has part: feature:4718943-4719061:1:exon
so has part: feature:4722599-4722893:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4709810-4710256:1:exon

position:4710256:1
position: 4710256
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4712400-4712492:1:exon

position:4712400:1
position: 4712400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4712492:1
position: 4712492
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4713740-4713831:1:exon

position:4713740:1
position: 4713740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4713831:1
position: 4713831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4717219-4717320:1:exon

position:4717219:1
position: 4717219
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4717320:1
position: 4717320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4718943-4719061:1:exon

position:4718943:1
position: 4718943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4719061:1
position: 4719061
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4722599-4722893:1:exon

position:4722599:1
position: 4722599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

BNIP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: BNIP1
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: vesicle transport protein SEC20
translation: MAAAQDVHVRICNQEIVKFDLEVKALIQDIRDCSGPLSALTELNTKVKEKFQQLRHRIQELEQSAKEQDKESEKQVLLQEVENHKKQMLSNQTSWRKANLTCKIAIDNLEKAELLQGGDLFRQRKTAKESLAQTSSAITESLMGISRMMSQQVQQSEEAMQTLVNSSRTILDANEEFKSMSGTIQLGRKLITKYNRRELTDKLLIFLALALFLATVLYILKKRLFPFL
SIO_010081: BNIP1
subclass of: SO_0000673
so part of: BNIP1
location: join(4710173..4710256,4712400..4712492,4713740..4713831,4717219..4717320,4718943..4719061,4722599..4722796)
location: region:4710173-4722796:1
so has part: feature:4710173-4710256:1:exon
so has part: feature:4712400-4712492:1:exon
so has part: feature:4713740-4713831:1:exon
so has part: feature:4717219-4717320:1:exon
so has part: feature:4718943-4719061:1:exon
so has part: feature:4722599-4722796:1:exon

XP_027375930.1
type: Protein
SIO_000068: ncbiprotein

position:4710173:1
position: 4710173
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4722796:1
position: 4722796
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4710173-4710256:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4712400-4712492:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4713740-4713831:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4717219-4717320:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4718943-4719061:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4722599-4722796:1:exon

LOC113879275
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: LOC113879275
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 4766741..4766859
location: region:4766741-4766859:1
so has part: feature:4766741-4766859:1:exon
subclass of: SO_0000573

113879275
type: Gene
SIO_000068: ncbigene

position:4766741:1
position: 4766741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4766859:1
position: 4766859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4766741-4766859:1:exon

LOC113879275
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 30522
gene: LOC113879275
product: 5S ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00001
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_003507257.1
SIO_010081: LOC113879275
subclass of: SO_0000673
so part of: LOC113879275
location: 4766741..4766859
location: region:4766741-4766859:1
so has part: feature:4766741-4766859:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4766741-4766859:1:exon

NKX2-5
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: NKX2-5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4778962..4782034)
location: region:4778962-4782034:-1
so has part: feature:4778962-4782034:-1:exon
subclass of: SO_0000010

113878823
type: Gene
SIO_000068: ncbigene

position:4778962:-1
position: 4778962
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4782034:-1
position: 4782034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4778962-4782034:-1:exon

NKX2-5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: NKX2-5
product: NK2 homeobox 5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 4 Proteins, and 13% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_027519937.1
SIO_010081: NKX2-5
subclass of: SO_0000673
so part of: NKX2-5
location: complement(join(4778962..4780075,4781588..4782034))
location: region:4778962-4782034:-1
so has part: feature:4781588-4782034:-1:exon
so has part: feature:4778962-4780075:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4781588-4782034:-1:exon

position:4781588:-1
position: 4781588
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4778962-4780075:-1:exon

position:4780075:-1
position: 4780075
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

NKX2-5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: NKX2-5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: homeobox protein Nkx-2.5
translation: MFPSPALTPTPFSVKDILNLEQQQRSLAAGELSARLEATLAPASCMLAAFKPEAYAGPEAAAPGFPELRAELGPAPSPAKCAPAFSAAPAFYPRAYGDPDPAKDHRADKKELCALQKAVELEKPESDSAERPRARRRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLELVGLPPPPPPPARRIAVPVLVRDGKPCLGDSAPYAPAYGVGLNAYGYNAYPAYPGYGGAACSPGYSCTAAYPAGPPPTQTATAAANNNFVNFGVGDLNAVQSPGIPQGNSGVSTLHGIRAW
SIO_010081: NKX2-5
subclass of: SO_0000673
so part of: NKX2-5
location: complement(join(4779435..4780075,4781588..4781918))
location: region:4779435-4781918:-1
so has part: feature:4781588-4781918:-1:exon
so has part: feature:4779435-4780075:-1:exon

XP_027375738.1
type: Protein
SIO_000068: ncbiprotein

position:4779435:-1
position: 4779435
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4781918:-1
position: 4781918
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4781588-4781918:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4779435-4780075:-1:exon

STC2
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: STC2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4866116..4880983)
location: region:4866116-4880983:-1
so has part: feature:4866116-4880983:-1:exon
subclass of: SO_0000010

113879105
type: Gene
SIO_000068: ncbigene

position:4866116:-1
position: 4866116
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4880983:-1
position: 4880983
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4866116-4880983:-1:exon

STC2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: STC2
product: stanniocalcin 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 2 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 51 samples with support for all annotated introns
transcript id: XM_027520371.1
SIO_010081: STC2
subclass of: SO_0000673
so part of: STC2
location: complement(join(4866116..4869551,4874813..4875024,4877472..4877614,4879652..4880983))
location: region:4866116-4880983:-1
so has part: feature:4879652-4880983:-1:exon
so has part: feature:4877472-4877614:-1:exon
so has part: feature:4874813-4875024:-1:exon
so has part: feature:4866116-4869551:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4879652-4880983:-1:exon

position:4879652:-1
position: 4879652
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4877472-4877614:-1:exon

position:4877472:-1
position: 4877472
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4877614:-1
position: 4877614
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4874813-4875024:-1:exon

position:4874813:-1
position: 4874813
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4875024:-1
position: 4875024
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4866116-4869551:-1:exon

position:4869551:-1
position: 4869551
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

STC2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: STC2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: stanniocalcin-2
translation: MCAERLGQFVTLALVLVTFDPARGTDATNTPEGPQDRGSQQKGRLSLQNTAEIQHCLVNAGDVGCGVFECFENNSCEIRGLHGICMTFLHNAGKFDAQGKSFIKDALKCKAHALRHRFSCISRKCPAIKEMVFQLQRECYLKHDLCSAAQENIRVMVEMIHFKDLLLHEPYVDLVNLLLTCGEEVKEAITHSVQAQCEQSWGSLCSILSFCTSAIQRPPTAPPEHQLQGDRAKLSRGHPAEMGHHLAEPSSRETGRGAKGERGSKSHPNAHARGRAAGPGAQGTSGSSEWEDEQSEYSDIRR
SIO_010081: STC2
subclass of: SO_0000673
so part of: STC2
location: complement(join(4869149..4869551,4874813..4875024,4877472..4877614,4879652..4879802))
location: region:4869149-4879802:-1
so has part: feature:4879652-4879802:-1:exon
so has part: feature:4877472-4877614:-1:exon
so has part: feature:4874813-4875024:-1:exon
so has part: feature:4869149-4869551:-1:exon

XP_027376172.1
type: Protein
SIO_000068: ncbiprotein

position:4869149:-1
position: 4869149
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4879802:-1
position: 4879802
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4879652-4879802:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4877472-4877614:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4874813-4875024:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4869149-4869551:-1:exon

BOD1
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: BOD1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5187614..5199912)
location: region:5187614-5199912:-1
so has part: feature:5187614-5199912:-1:exon
subclass of: SO_0000010

113878910
type: Gene
SIO_000068: ncbigene

position:5187614:-1
position: 5187614
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5199912:-1
position: 5199912
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5187614-5199912:-1:exon

BOD1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: BOD1
product: biorientation of chromosomes in cell division 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 37 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 210 samples with support for all annotated introns
transcript id: XM_027520075.1
SIO_010081: BOD1
subclass of: SO_0000673
so part of: BOD1
location: complement(join(5187614..5188388,5189351..5189547,5195196..5195320,5199461..5199912))
location: region:5187614-5199912:-1
so has part: feature:5199461-5199912:-1:exon
so has part: feature:5195196-5195320:-1:exon
so has part: feature:5189351-5189547:-1:exon
so has part: feature:5187614-5188388:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5199461-5199912:-1:exon

position:5199461:-1
position: 5199461
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5195196-5195320:-1:exon

position:5195196:-1
position: 5195196
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5195320:-1
position: 5195320
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5189351-5189547:-1:exon

position:5189351:-1
position: 5189351
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5189547:-1
position: 5189547
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5187614-5188388:-1:exon

position:5188388:-1
position: 5188388
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

BOD1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: BOD1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: biorientation of chromosomes in cell division protein 1
translation: MADGGGGGGTGAVGGGGAGPASAGAAAGGGGAGGSGGPINPASLPPGDPQLIALIVEQLKSRGLFDSFRRDCLADVDTKPAYQNLRQKVDNFVSTHLDKQEWNPTMNKNQLRNGLRQSVVQSGMLEAGVDRIISQVVDPKLNHIFRPQIERAIHEFLAAQKKEAVPAPPPEPESQDPAAPSQDAS
SIO_010081: BOD1
subclass of: SO_0000673
so part of: BOD1
location: complement(join(5189352..5189547,5195196..5195320,5199461..5199697))
location: region:5189352-5199697:-1
so has part: feature:5199461-5199697:-1:exon
so has part: feature:5195196-5195320:-1:exon
so has part: feature:5189352-5189547:-1:exon

XP_027375876.1
type: Protein
SIO_000068: ncbiprotein

position:5189352:-1
position: 5189352
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5199697:-1
position: 5199697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5199461-5199697:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5195196-5195320:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5189352-5189547:-1:exon

LOC113878911
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: LOC113878911
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5200122..5269274
location: region:5200122-5269274:1
so has part: feature:5200122-5269274:1:exon
subclass of: SO_0000011

113878911
type: Gene
SIO_000068: ncbigene

position:5200122:1
position: 5200122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5269274:1
position: 5269274
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5200122-5269274:1:exon

LOC113878911
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 30522
nc RNA class: lncRNA
gene: LOC113878911
product: uncharacterized LOC113878911, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
transcript id: XR_003507160.1
SIO_010081: LOC113878911
subclass of: SO_0000673
so part of: LOC113878911
location: join(5200122..5200227,5200858..5201004,5266518..5266556,5268060..5269274)
location: region:5200122-5269274:1
so has part: feature:5200122-5200227:1:exon
so has part: feature:5200858-5201004:1:exon
so has part: feature:5266518-5266556:1:exon
so has part: feature:5268060-5269274:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5200122-5200227:1:exon

position:5200227:1
position: 5200227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5200858-5201004:1:exon

position:5200858:1
position: 5200858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5201004:1
position: 5201004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5266518-5266556:1:exon

position:5266518:1
position: 5266518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5266556:1
position: 5266556
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5268060-5269274:1:exon

position:5268060:1
position: 5268060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC113878911
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 30522
nc RNA class: lncRNA
gene: LOC113878911
product: uncharacterized LOC113878911, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 50 samples with support for all annotated introns
transcript id: XR_003507161.1
SIO_010081: LOC113878911
subclass of: SO_0000673
so part of: LOC113878911
location: join(5200122..5200227,5200858..5201004,5247923..5250030)
location: region:5200122-5250030:1
so has part: feature:5200122-5200227:1:exon
so has part: feature:5200858-5201004:1:exon
so has part: feature:5247923-5250030:1:exon

position:5250030:1
position: 5250030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5200122-5200227:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5200858-5201004:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5247923-5250030:1:exon

position:5247923:1
position: 5247923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC113878911
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 30522
nc RNA class: lncRNA
gene: LOC113878911
product: uncharacterized LOC113878911, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 58 samples with support for all annotated introns
transcript id: XR_003507159.1
SIO_010081: LOC113878911
subclass of: SO_0000673
so part of: LOC113878911
location: join(5200122..5200227,5200858..5201004,5212892..5213350)
location: region:5200122-5213350:1
so has part: feature:5200122-5200227:1:exon
so has part: feature:5200858-5201004:1:exon
so has part: feature:5212892-5213350:1:exon

position:5213350:1
position: 5213350
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5200122-5200227:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5200858-5201004:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5212892-5213350:1:exon

position:5212892:1
position: 5212892
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC113879066
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: LOC113879066
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5343383..5345629
location: region:5343383-5345629:1
so has part: feature:5343383-5345629:1:exon
subclass of: SO_0000011

113879066
type: Gene
SIO_000068: ncbigene

position:5343383:1
position: 5343383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5345629:1
position: 5345629
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5343383-5345629:1:exon

LOC113879066
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 30522
nc RNA class: lncRNA
gene: LOC113879066
product: uncharacterized LOC113879066
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns
transcript id: XR_003507182.1
SIO_010081: LOC113879066
subclass of: SO_0000673
so part of: LOC113879066
location: join(5343383..5343777,5345476..5345629)
location: region:5343383-5345629:1
so has part: feature:5343383-5343777:1:exon
so has part: feature:5345476-5345629:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5343383-5343777:1:exon

position:5343777:1
position: 5343777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5345476-5345629:1:exon

position:5345476:1
position: 5345476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC113879178
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: LOC113879178
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5357982..5362880
location: region:5357982-5362880:1
so has part: feature:5357982-5362880:1:exon
subclass of: SO_0000011

113879178
type: Gene
SIO_000068: ncbigene

position:5357982:1
position: 5357982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5362880:1
position: 5362880
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5357982-5362880:1:exon

LOC113879178
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 30522
nc RNA class: lncRNA
gene: LOC113879178
product: uncharacterized LOC113879178
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XR_003507226.1
SIO_010081: LOC113879178
subclass of: SO_0000673
so part of: LOC113879178
location: join(5357982..5358555,5358967..5359105,5359909..5362880)
location: region:5357982-5362880:1
so has part: feature:5357982-5358555:1:exon
so has part: feature:5358967-5359105:1:exon
so has part: feature:5359909-5362880:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5357982-5358555:1:exon

position:5358555:1
position: 5358555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5358967-5359105:1:exon

position:5358967:1
position: 5358967
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5359105:1
position: 5359105
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5359909-5362880:1:exon

position:5359909:1
position: 5359909
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC113878838
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: LOC113878838
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 5371670..5372439
location: region:5371670-5372439:1
so has part: feature:5371670-5372439:1:exon

113878838
type: Gene
SIO_000068: ncbigene

position:5371670:1
position: 5371670
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5372439:1
position: 5372439
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5371670-5372439:1:exon

LOC113878838
type: Exon
subclass of: SO_0000147
RO_0002162: 30522
gene: LOC113878838
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 63% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC113878838
subclass of: SO_0000673
so part of: LOC113878838
location: 5371670..5372439
location: region:5371670-5372439:1
so has part: feature:5371670-5372439:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5371670-5372439:1:exon

CPEB4
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: CPEB4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5473958..5546452
location: region:5473958-5546452:1
so has part: feature:5473958-5546452:1:exon
subclass of: SO_0000010

113879202
type: Gene
SIO_000068: ncbigene

position:5473958:1
position: 5473958
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5546452:1
position: 5546452
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5473958-5546452:1:exon

CPEB4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: CPEB4
product: cytoplasmic polyadenylation element binding protein 4, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 66 ESTs, 5 long SRA reads, 3 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 190 samples with support for all annotated introns
transcript id: XM_027520496.1
SIO_010081: CPEB4
subclass of: SO_0000673
so part of: CPEB4
location: join(5473958..5476552,5497391..5497472,5517719..5517769,5530857..5531030,5535863..5535952,5536313..5536431,5538045..5538159,5539284..5539465,5542051..5546452)
location: region:5473958-5546452:1
so has part: feature:5473958-5476552:1:exon
so has part: feature:5497391-5497472:1:exon
so has part: feature:5517719-5517769:1:exon
so has part: feature:5530857-5531030:1:exon
so has part: feature:5535863-5535952:1:exon
so has part: feature:5536313-5536431:1:exon
so has part: feature:5538045-5538159:1:exon
so has part: feature:5539284-5539465:1:exon
so has part: feature:5542051-5546452:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5473958-5476552:1:exon

position:5476552:1
position: 5476552
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5497391-5497472:1:exon

position:5497391:1
position: 5497391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5497472:1
position: 5497472
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5517719-5517769:1:exon

position:5517719:1
position: 5517719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5517769:1
position: 5517769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5530857-5531030:1:exon

position:5530857:1
position: 5530857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5531030:1
position: 5531030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5535863-5535952:1:exon

position:5535863:1
position: 5535863
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5535952:1
position: 5535952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:5536313-5536431:1:exon

position:5536313:1
position: 5536313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5536431:1
position: 5536431
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:5538045-5538159:1:exon

position:5538045:1
position: 5538045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5538159:1
position: 5538159
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:5539284-5539465:1:exon

position:5539284:1
position: 5539284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5539465:1
position: 5539465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:5542051-5546452:1:exon

position:5542051:1
position: 5542051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CPEB4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: CPEB4
product: cytoplasmic polyadenylation element binding protein 4, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 66 ESTs, 4 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 141 samples with support for all annotated introns
transcript id: XM_027520492.1
SIO_010081: CPEB4
subclass of: SO_0000673
so part of: CPEB4
location: join(5473992..5476552,5497391..5497472,5517719..5517769,5529133..5529156,5530857..5531030,5535863..5535952,5536313..5536431,5538045..5538159,5539284..5539465,5542051..5546452)
location: region:5473992-5546452:1
so has part: feature:5473992-5476552:1:exon
so has part: feature:5497391-5497472:1:exon
so has part: feature:5517719-5517769:1:exon
so has part: feature:5529133-5529156:1:exon
so has part: feature:5530857-5531030:1:exon
so has part: feature:5535863-5535952:1:exon
so has part: feature:5536313-5536431:1:exon
so has part: feature:5538045-5538159:1:exon
so has part: feature:5539284-5539465:1:exon
so has part: feature:5542051-5546452:1:exon

position:5473992:1
position: 5473992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5473992-5476552:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5497391-5497472:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5517719-5517769:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5529133-5529156:1:exon

position:5529133:1
position: 5529133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5529156:1
position: 5529156
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5530857-5531030:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5535863-5535952:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5536313-5536431:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5538045-5538159:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5539284-5539465:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5542051-5546452:1:exon

CPEB4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: CPEB4
product: cytoplasmic polyadenylation element binding protein 4, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 66 ESTs, 4 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 31 samples with support for all annotated introns
transcript id: XM_027520493.1
SIO_010081: CPEB4
subclass of: SO_0000673
so part of: CPEB4
location: join(5473992..5476552,5497391..5497472,5529133..5529156,5530857..5531030,5535863..5535952,5536313..5536431,5538045..5538159,5539284..5539465,5542051..5546452)
location: region:5473992-5546452:1
so has part: feature:5473992-5476552:1:exon
so has part: feature:5497391-5497472:1:exon
so has part: feature:5529133-5529156:1:exon
so has part: feature:5530857-5531030:1:exon
so has part: feature:5535863-5535952:1:exon
so has part: feature:5536313-5536431:1:exon
so has part: feature:5538045-5538159:1:exon
so has part: feature:5539284-5539465:1:exon
so has part: feature:5542051-5546452:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5473992-5476552:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5497391-5497472:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5529133-5529156:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5530857-5531030:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5535863-5535952:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5536313-5536431:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5538045-5538159:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5539284-5539465:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5542051-5546452:1:exon

CPEB4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: CPEB4
product: cytoplasmic polyadenylation element binding protein 4, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 66 ESTs, 4 long SRA reads, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 112 samples with support for all annotated introns
transcript id: XM_027520495.1
SIO_010081: CPEB4
subclass of: SO_0000673
so part of: CPEB4
location: join(5473992..5476552,5497391..5497472,5530857..5531030,5535863..5535952,5536313..5536431,5538045..5538159,5539284..5539465,5542051..5546452)
location: region:5473992-5546452:1
so has part: feature:5473992-5476552:1:exon
so has part: feature:5497391-5497472:1:exon
so has part: feature:5530857-5531030:1:exon
so has part: feature:5535863-5535952:1:exon
so has part: feature:5536313-5536431:1:exon
so has part: feature:5538045-5538159:1:exon
so has part: feature:5539284-5539465:1:exon
so has part: feature:5542051-5546452:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5473992-5476552:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5497391-5497472:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5530857-5531030:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5535863-5535952:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5536313-5536431:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5538045-5538159:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5539284-5539465:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5542051-5546452:1:exon

CPEB4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: CPEB4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cytoplasmic polyadenylation element-binding protein 4 isoform X1
translation: MGDYGFGVLVQSNTGNKSAFPVRFHPHLQPPHHHQNATPSPAAFINNNTAANGSSAGSAWLFPAPATHNIQDEILGSEKAKSQQQEPQDPLEKQQLSPSPGQEAGILPETEKAKSEENQGDNSSENGNGKEKIRIESPVLTGFDYQEATGLGTSTQPLTSSASSLTGFSNWSAAIAPSSSTIINEDASFFHQGGVPAASANNGALLFQNFPHHVSPGFGGSFSPQIGPLSQHHPHHPHFQHHHSQHQQQRRSPASPHPPPFTHRNAAFNQLPHLANNLNKPPSPWSSYQSPSPTPSSSWSPGGGGYGGWGGSQGRDHRRGLNGGITPLNSISPLKKNFASNHIQLQKYARPSSAFAPKSWMEDSLNRADNIFPFPDRPRTFDMHSLESSLIDIMRAENDSIKGRLNYSYPGSDSSLLINARTYGRRRGQSSLFPMEDGFLDDGRGDQPLHSGLGSPHCFTHQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPYVLDDQLCDECQGARCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDRPRHISFRWN
SIO_010081: CPEB4
subclass of: SO_0000673
so part of: CPEB4
location: join(5475428..5476552,5497391..5497472,5517719..5517769,5529133..5529156,5530857..5531030,5535863..5535952,5536313..5536431,5538045..5538159,5539284..5539465,5542051..5542278)
location: region:5475428-5542278:1
so has part: feature:5475428-5476552:1:exon
so has part: feature:5497391-5497472:1:exon
so has part: feature:5517719-5517769:1:exon
so has part: feature:5529133-5529156:1:exon
so has part: feature:5530857-5531030:1:exon
so has part: feature:5535863-5535952:1:exon
so has part: feature:5536313-5536431:1:exon
so has part: feature:5538045-5538159:1:exon
so has part: feature:5539284-5539465:1:exon
so has part: feature:5542051-5542278:1:exon

XP_027376293.1
type: Protein
SIO_000068: ncbiprotein

position:5475428:1
position: 5475428
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5542278:1
position: 5542278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5475428-5476552:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5497391-5497472:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5517719-5517769:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5529133-5529156:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5530857-5531030:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5535863-5535952:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5536313-5536431:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5538045-5538159:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5539284-5539465:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5542051-5542278:1:exon

CPEB4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: CPEB4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cytoplasmic polyadenylation element-binding protein 4 isoform X4
translation: MGDYGFGVLVQSNTGNKSAFPVRFHPHLQPPHHHQNATPSPAAFINNNTAANGSSAGSAWLFPAPATHNIQDEILGSEKAKSQQQEPQDPLEKQQLSPSPGQEAGILPETEKAKSEENQGDNSSENGNGKEKIRIESPVLTGFDYQEATGLGTSTQPLTSSASSLTGFSNWSAAIAPSSSTIINEDASFFHQGGVPAASANNGALLFQNFPHHVSPGFGGSFSPQIGPLSQHHPHHPHFQHHHSQHQQQRRSPASPHPPPFTHRNAAFNQLPHLANNLNKPPSPWSSYQSPSPTPSSSWSPGGGGYGGWGGSQGRDHRRGLNGGITPLNSISPLKKNFASNHIQLQKYARPSSAFAPKSWMEDSLNRADNIFPFPDRPRTFDMHSLESSLIDIMRAENDSIKGRLNYSYPGSDSSLLINGQSSLFPMEDGFLDDGRGDQPLHSGLGSPHCFTHQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPYVLDDQLCDECQGARCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDRPRHISFRWN
SIO_010081: CPEB4
subclass of: SO_0000673
so part of: CPEB4
location: join(5475428..5476552,5497391..5497472,5517719..5517769,5530857..5531030,5535863..5535952,5536313..5536431,5538045..5538159,5539284..5539465,5542051..5542278)
location: region:5475428-5542278:1
so has part: feature:5475428-5476552:1:exon
so has part: feature:5497391-5497472:1:exon
so has part: feature:5517719-5517769:1:exon
so has part: feature:5530857-5531030:1:exon
so has part: feature:5535863-5535952:1:exon
so has part: feature:5536313-5536431:1:exon
so has part: feature:5538045-5538159:1:exon
so has part: feature:5539284-5539465:1:exon
so has part: feature:5542051-5542278:1:exon

XP_027376297.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5475428-5476552:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5497391-5497472:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5517719-5517769:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5530857-5531030:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5535863-5535952:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5536313-5536431:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5538045-5538159:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5539284-5539465:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5542051-5542278:1:exon

CPEB4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: CPEB4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cytoplasmic polyadenylation element-binding protein 4 isoform X2
translation: MGDYGFGVLVQSNTGNKSAFPVRFHPHLQPPHHHQNATPSPAAFINNNTAANGSSAGSAWLFPAPATHNIQDEILGSEKAKSQQQEPQDPLEKQQLSPSPGQEAGILPETEKAKSEENQGDNSSENGNGKEKIRIESPVLTGFDYQEATGLGTSTQPLTSSASSLTGFSNWSAAIAPSSSTIINEDASFFHQGGVPAASANNGALLFQNFPHHVSPGFGGSFSPQIGPLSQHHPHHPHFQHHHSQHQQQRRSPASPHPPPFTHRNAAFNQLPHLANNLNKPPSPWSSYQSPSPTPSSSWSPGGGGYGGWGGSQGRDHRRGLNGGITPLNSISPLKKNFASNHIQLQKYARPSSAFAPKSWMEDSLNRADNIFPFPDRPRTFDMHSLESSLIDIMRAENDSIKARTYGRRRGQSSLFPMEDGFLDDGRGDQPLHSGLGSPHCFTHQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPYVLDDQLCDECQGARCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDRPRHISFRWN
SIO_010081: CPEB4
subclass of: SO_0000673
so part of: CPEB4
location: join(5475428..5476552,5497391..5497472,5529133..5529156,5530857..5531030,5535863..5535952,5536313..5536431,5538045..5538159,5539284..5539465,5542051..5542278)
location: region:5475428-5542278:1
so has part: feature:5475428-5476552:1:exon
so has part: feature:5497391-5497472:1:exon
so has part: feature:5529133-5529156:1:exon
so has part: feature:5530857-5531030:1:exon
so has part: feature:5535863-5535952:1:exon
so has part: feature:5536313-5536431:1:exon
so has part: feature:5538045-5538159:1:exon
so has part: feature:5539284-5539465:1:exon
so has part: feature:5542051-5542278:1:exon

XP_027376294.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5475428-5476552:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5497391-5497472:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5529133-5529156:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5530857-5531030:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5535863-5535952:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5536313-5536431:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5538045-5538159:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5539284-5539465:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5542051-5542278:1:exon

CPEB4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: CPEB4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cytoplasmic polyadenylation element-binding protein 4 isoform X3
translation: MGDYGFGVLVQSNTGNKSAFPVRFHPHLQPPHHHQNATPSPAAFINNNTAANGSSAGSAWLFPAPATHNIQDEILGSEKAKSQQQEPQDPLEKQQLSPSPGQEAGILPETEKAKSEENQGDNSSENGNGKEKIRIESPVLTGFDYQEATGLGTSTQPLTSSASSLTGFSNWSAAIAPSSSTIINEDASFFHQGGVPAASANNGALLFQNFPHHVSPGFGGSFSPQIGPLSQHHPHHPHFQHHHSQHQQQRRSPASPHPPPFTHRNAAFNQLPHLANNLNKPPSPWSSYQSPSPTPSSSWSPGGGGYGGWGGSQGRDHRRGLNGGITPLNSISPLKKNFASNHIQLQKYARPSSAFAPKSWMEDSLNRADNIFPFPDRPRTFDMHSLESSLIDIMRAENDSIKGQSSLFPMEDGFLDDGRGDQPLHSGLGSPHCFTHQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPYVLDDQLCDECQGARCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDRPRHISFRWN
SIO_010081: CPEB4
subclass of: SO_0000673
so part of: CPEB4
location: join(5475428..5476552,5497391..5497472,5530857..5531030,5535863..5535952,5536313..5536431,5538045..5538159,5539284..5539465,5542051..5542278)
location: region:5475428-5542278:1
so has part: feature:5475428-5476552:1:exon
so has part: feature:5497391-5497472:1:exon
so has part: feature:5530857-5531030:1:exon
so has part: feature:5535863-5535952:1:exon
so has part: feature:5536313-5536431:1:exon
so has part: feature:5538045-5538159:1:exon
so has part: feature:5539284-5539465:1:exon
so has part: feature:5542051-5542278:1:exon

XP_027376296.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5475428-5476552:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5497391-5497472:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5530857-5531030:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5535863-5535952:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5536313-5536431:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5538045-5538159:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5539284-5539465:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5542051-5542278:1:exon

LOC113879203
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: LOC113879203
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(5495840..5497371)
location: region:5495840-5497371:-1
so has part: feature:5495840-5497371:-1:exon

113879203
type: Gene
SIO_000068: ncbigene

position:5495840:-1
position: 5495840
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5497371:-1
position: 5497371
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5495840-5497371:-1:exon

LOC113879203
type: Exon
subclass of: SO_0000147
RO_0002162: 30522
gene: LOC113879203
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC113879203
subclass of: SO_0000673
so part of: LOC113879203
location: complement(5495840..5497371)
location: region:5495840-5497371:-1
so has part: feature:5495840-5497371:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5495840-5497371:-1:exon

C20H5orf47
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: C20H5orf47
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5570812..5588017
location: region:5570812-5588017:1
so has part: feature:5570812-5588017:1:exon
subclass of: SO_0000010

113879225
type: Gene
SIO_000068: ncbigene

position:5570812:1
position: 5570812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5588017:1
position: 5588017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5570812-5588017:1:exon

C20H5orf47
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: C20H5orf47
product: chromosome 20 C5orf47 homolog
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 13 ESTs, 1 Protein, and 80% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_027520527.1
SIO_010081: C20H5orf47
subclass of: SO_0000673
so part of: C20H5orf47
location: join(5570812..5571082,5580367..5580455,5582194..5582293,5584213..5584251,5587831..5588017)
location: region:5570812-5588017:1
so has part: feature:5570812-5571082:1:exon
so has part: feature:5580367-5580455:1:exon
so has part: feature:5582194-5582293:1:exon
so has part: feature:5584213-5584251:1:exon
so has part: feature:5587831-5588017:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5570812-5571082:1:exon

position:5571082:1
position: 5571082
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5580367-5580455:1:exon

position:5580367:1
position: 5580367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5580455:1
position: 5580455
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5582194-5582293:1:exon

position:5582194:1
position: 5582194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5582293:1
position: 5582293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5584213-5584251:1:exon

position:5584213:1
position: 5584213
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5584251:1
position: 5584251
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5587831-5588017:1:exon

position:5587831:1
position: 5587831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

C20H5orf47
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: C20H5orf47
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein C5orf47 homolog
translation: MDSPPVGLGTKRRVRTALRDCPEKPQKCNEGLTQKNLAKEFDFPIPLSETSKIMKKKNKKVLVWNGVYKIISKMLEENEKYRLRLKCQQLSRENSKDTK
SIO_010081: C20H5orf47
subclass of: SO_0000673
so part of: C20H5orf47
location: join(5570992..5571082,5580367..5580455,5582194..5582293,5584213..5584232)
location: region:5570992-5584232:1
so has part: feature:5570992-5571082:1:exon
so has part: feature:5580367-5580455:1:exon
so has part: feature:5582194-5582293:1:exon
so has part: feature:5584213-5584232:1:exon

XP_027376328.1
type: Protein
SIO_000068: ncbiprotein

position:5570992:1
position: 5570992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5584232:1
position: 5584232
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5570992-5571082:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5580367-5580455:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5582194-5582293:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5584213-5584232:1:exon

NSG2
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: NSG2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5618339..5689942
location: region:5618339-5689942:1
so has part: feature:5618339-5689942:1:exon
subclass of: SO_0000010

113878929
type: Gene
SIO_000068: ncbigene

position:5618339:1
position: 5618339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5689942:1
position: 5689942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5618339-5689942:1:exon

NSG2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: NSG2
product: neuronal vesicle trafficking associated 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 57 ESTs, 1 long SRA read, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 84 samples with support for all annotated introns
transcript id: XM_027520112.1
SIO_010081: NSG2
subclass of: SO_0000673
so part of: NSG2
location: join(5618339..5618510,5619405..5619555,5637929..5638012,5684733..5684843,5688087..5689942)
location: region:5618339-5689942:1
so has part: feature:5618339-5618510:1:exon
so has part: feature:5619405-5619555:1:exon
so has part: feature:5637929-5638012:1:exon
so has part: feature:5684733-5684843:1:exon
so has part: feature:5688087-5689942:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5618339-5618510:1:exon

position:5618510:1
position: 5618510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5619405-5619555:1:exon

position:5619405:1
position: 5619405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5619555:1
position: 5619555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5637929-5638012:1:exon

position:5637929:1
position: 5637929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5638012:1
position: 5638012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5684733-5684843:1:exon

position:5684733:1
position: 5684733
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5684843:1
position: 5684843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5688087-5689942:1:exon

position:5688087:1
position: 5688087
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

NSG2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: NSG2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: neuronal vesicle trafficking-associated protein 2
translation: MVKLNSNPSEKGAKPPSVEDGFQTVPLITPLEVNHLQLPAPEKVIVKTRTEYQPEQKNKGKFRVPKIAEFTVTILVSLALAFLACIVFLVVYKAFTYDHSCPEGFVYKHKRCIPASLDAYYSSQDPSSRSRFYTVISHYSVAKQSTARAIGPWLSAAAVIHEPKPPKTQGH
SIO_010081: NSG2
subclass of: SO_0000673
so part of: NSG2
location: join(5619427..5619555,5637929..5638012,5684733..5684843,5688087..5688278)
location: region:5619427-5688278:1
so has part: feature:5619427-5619555:1:exon
so has part: feature:5637929-5638012:1:exon
so has part: feature:5684733-5684843:1:exon
so has part: feature:5688087-5688278:1:exon

XP_027375913.1
type: Protein
SIO_000068: ncbiprotein

position:5619427:1
position: 5619427
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5688278:1
position: 5688278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5619427-5619555:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5637929-5638012:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5684733-5684843:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5688087-5688278:1:exon

LOC113878928
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: LOC113878928
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(5631681..5634897)
location: region:5631681-5634897:-1
so has part: feature:5631681-5634897:-1:exon

113878928
type: Gene
SIO_000068: ncbigene

position:5631681:-1
position: 5631681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5634897:-1
position: 5634897
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5631681-5634897:-1:exon

LOC113878928
type: Exon
subclass of: SO_0000147
RO_0002162: 30522
gene: LOC113878928
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC113878928
subclass of: SO_0000673
so part of: LOC113878928
location: complement(5631681..5634897)
location: region:5631681-5634897:-1
so has part: feature:5631681-5634897:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5631681-5634897:-1:exon

LOC113878931
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: LOC113878931
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5643017..5649372
location: region:5643017-5649372:1
so has part: feature:5643017-5649372:1:exon
subclass of: SO_0000011

113878931
type: Gene
SIO_000068: ncbigene

position:5643017:1
position: 5643017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5649372:1
position: 5649372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5643017-5649372:1:exon

LOC113878931
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 30522
nc RNA class: lncRNA
gene: LOC113878931
product: uncharacterized LOC113878931
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
transcript id: XR_003507167.1
SIO_010081: LOC113878931
subclass of: SO_0000673
so part of: LOC113878931
location: join(5643017..5643027,5644567..5644569,5649177..5649372)
location: region:5643017-5649372:1
so has part: feature:5643017-5643027:1:exon
so has part: feature:5644567-5644569:1:exon
so has part: feature:5649177-5649372:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5643017-5643027:1:exon

position:5643027:1
position: 5643027
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5644567-5644569:1:exon

position:5644567:1
position: 5644567
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5644569:1
position: 5644569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5649177-5649372:1:exon

position:5649177:1
position: 5649177
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC113878930
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: LOC113878930
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 5648369..5648921
location: region:5648369-5648921:1
so has part: feature:5648369-5648921:1:exon

113878930
type: Gene
SIO_000068: ncbigene

position:5648369:1
position: 5648369
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5648921:1
position: 5648921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5648369-5648921:1:exon

LOC113878930
type: Exon
subclass of: SO_0000147
RO_0002162: 30522
gene: LOC113878930
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC113878930
subclass of: SO_0000673
so part of: LOC113878930
location: 5648369..5648921
location: region:5648369-5648921:1
so has part: feature:5648369-5648921:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5648369-5648921:1:exon

LOC113878839
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: LOC113878839
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(6153987..6154910)
location: region:6153987-6154910:-1
so has part: feature:6153987-6154910:-1:exon

113878839
type: Gene
SIO_000068: ncbigene

position:6153987:-1
position: 6153987
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6154910:-1
position: 6154910
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6153987-6154910:-1:exon

LOC113878839
type: Exon
subclass of: SO_0000147
RO_0002162: 30522
gene: LOC113878839
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
pseudo: true
SIO_010081: LOC113878839
subclass of: SO_0000673
so part of: LOC113878839
location: complement(6153987..6154910)
location: region:6153987-6154910:-1
so has part: feature:6153987-6154910:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6153987-6154910:-1:exon

MSX2
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: MSX2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6308163..6314141
location: region:6308163-6314141:1
so has part: feature:6308163-6314141:1:exon
subclass of: SO_0000010

113879128
type: Gene
SIO_000068: ncbigene

position:6308163:1
position: 6308163
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6314141:1
position: 6314141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6308163-6314141:1:exon

MSX2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: MSX2
product: msh homeobox 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 36 ESTs, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 96 samples with support for all annotated introns
transcript id: XM_027520396.1
SIO_010081: MSX2
subclass of: SO_0000673
so part of: MSX2
location: join(6308163..6308627,6312415..6314141)
location: region:6308163-6314141:1
so has part: feature:6308163-6308627:1:exon
so has part: feature:6312415-6314141:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6308163-6308627:1:exon

position:6308627:1
position: 6308627
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6312415-6314141:1:exon

position:6312415:1
position: 6312415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

MSX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: MSX2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: homeobox protein MSX-2
translation: MASPSKGNDLFSSDEEGPAMVAGPGPGPGGAEGAAEERRVKVSSLPFSVEALMSDKKPPKETSPRPAESASAGATLRPLLLPGHGVREAHSPGPLVKPFETASVKSENSEDGAAWMQEPGRYSPPPRHMSPTTCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSGFSLPFPINSPLQAASLYGASYPFHRPVLPIPPVGLYATPVGYGMYHLS
SIO_010081: MSX2
subclass of: SO_0000673
so part of: MSX2
location: join(6308249..6308627,6312415..6312839)
location: region:6308249-6312839:1
so has part: feature:6308249-6308627:1:exon
so has part: feature:6312415-6312839:1:exon

XP_027376197.1
type: Protein
SIO_000068: ncbiprotein

position:6308249:1
position: 6308249
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6312839:1
position: 6312839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6308249-6308627:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6312415-6312839:1:exon

FAM169A
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: FAM169A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6540521..6606071
location: region:6540521-6606071:1
so has part: feature:6540521-6606071:1:exon
subclass of: SO_0000010

113878882
type: Gene
SIO_000068: ncbigene

position:6540521:1
position: 6540521
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6606071:1
position: 6606071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6540521-6606071:1:exon

FAM169A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: FAM169A
product: family with sequence similarity 169 member A, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 29 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 36 samples with support for all annotated introns
transcript id: XM_027520026.1
SIO_010081: FAM169A
subclass of: SO_0000673
so part of: FAM169A
location: join(6540521..6540601,6560333..6560467,6561633..6561732,6562033..6562118,6564220..6564391,6581324..6581503,6585177..6585305,6587896..6588008,6591211..6591250,6591744..6591894,6596683..6596839,6599693..6599896,6601839..6606071)
location: region:6540521-6606071:1
so has part: feature:6540521-6540601:1:exon
so has part: feature:6560333-6560467:1:exon
so has part: feature:6561633-6561732:1:exon
so has part: feature:6562033-6562118:1:exon
so has part: feature:6564220-6564391:1:exon
so has part: feature:6581324-6581503:1:exon
so has part: feature:6585177-6585305:1:exon
so has part: feature:6587896-6588008:1:exon
so has part: feature:6591211-6591250:1:exon
so has part: feature:6591744-6591894:1:exon
so has part: feature:6596683-6596839:1:exon
so has part: feature:6599693-6599896:1:exon
so has part: feature:6601839-6606071:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6540521-6540601:1:exon

position:6540601:1
position: 6540601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6560333-6560467:1:exon

position:6560333:1
position: 6560333
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6560467:1
position: 6560467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6561633-6561732:1:exon

position:6561633:1
position: 6561633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6561732:1
position: 6561732
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6562033-6562118:1:exon

position:6562033:1
position: 6562033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6562118:1
position: 6562118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6564220-6564391:1:exon

position:6564220:1
position: 6564220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6564391:1
position: 6564391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:6581324-6581503:1:exon

position:6581324:1
position: 6581324
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6581503:1
position: 6581503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:6585177-6585305:1:exon

position:6585177:1
position: 6585177
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6585305:1
position: 6585305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:6587896-6588008:1:exon

position:6587896:1
position: 6587896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6588008:1
position: 6588008
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:6591211-6591250:1:exon

position:6591211:1
position: 6591211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6591250:1
position: 6591250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:6591744-6591894:1:exon

position:6591744:1
position: 6591744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6591894:1
position: 6591894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:6596683-6596839:1:exon

position:6596683:1
position: 6596683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6596839:1
position: 6596839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:6599693-6599896:1:exon

position:6599693:1
position: 6599693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6599896:1
position: 6599896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:6601839-6606071:1:exon

position:6601839:1
position: 6601839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

FAM169A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: FAM169A
product: family with sequence similarity 169 member A, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 29 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 73 samples with support for all annotated introns
transcript id: XM_027520025.1
SIO_010081: FAM169A
subclass of: SO_0000673
so part of: FAM169A
location: join(6540821..6540943,6560333..6560467,6561633..6561732,6562033..6562118,6564220..6564391,6581324..6581503,6585177..6585305,6587896..6588008,6591211..6591250,6591744..6591894,6596683..6596839,6599693..6599896,6601839..6606071)
location: region:6540821-6606071:1
so has part: feature:6540821-6540943:1:exon
so has part: feature:6560333-6560467:1:exon
so has part: feature:6561633-6561732:1:exon
so has part: feature:6562033-6562118:1:exon
so has part: feature:6564220-6564391:1:exon
so has part: feature:6581324-6581503:1:exon
so has part: feature:6585177-6585305:1:exon
so has part: feature:6587896-6588008:1:exon
so has part: feature:6591211-6591250:1:exon
so has part: feature:6591744-6591894:1:exon
so has part: feature:6596683-6596839:1:exon
so has part: feature:6599693-6599896:1:exon
so has part: feature:6601839-6606071:1:exon

position:6540821:1
position: 6540821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6540821-6540943:1:exon

position:6540943:1
position: 6540943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6560333-6560467:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6561633-6561732:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6562033-6562118:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6564220-6564391:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6581324-6581503:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6585177-6585305:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6587896-6588008:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6591211-6591250:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6591744-6591894:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6596683-6596839:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6599693-6599896:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:6601839-6606071:1:exon

FAM169A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: FAM169A
product: family with sequence similarity 169 member A, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 29 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 122 samples with support for all annotated introns
transcript id: XM_027520022.1
SIO_010081: FAM169A
subclass of: SO_0000673
so part of: FAM169A
location: join(6541336..6541458,6560333..6560467,6561633..6561732,6562033..6562118,6564220..6564391,6581324..6581503,6585177..6585305,6587896..6588008,6591211..6591250,6591744..6591894,6596683..6596839,6599693..6599896,6601839..6606071)
location: region:6541336-6606071:1
so has part: feature:6541336-6541458:1:exon
so has part: feature:6560333-6560467:1:exon
so has part: feature:6561633-6561732:1:exon
so has part: feature:6562033-6562118:1:exon
so has part: feature:6564220-6564391:1:exon
so has part: feature:6581324-6581503:1:exon
so has part: feature:6585177-6585305:1:exon
so has part: feature:6587896-6588008:1:exon
so has part: feature:6591211-6591250:1:exon
so has part: feature:6591744-6591894:1:exon
so has part: feature:6596683-6596839:1:exon
so has part: feature:6599693-6599896:1:exon
so has part: feature:6601839-6606071:1:exon

position:6541336:1
position: 6541336
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6541336-6541458:1:exon

position:6541458:1
position: 6541458
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6560333-6560467:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6561633-6561732:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6562033-6562118:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6564220-6564391:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6581324-6581503:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6585177-6585305:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6587896-6588008:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6591211-6591250:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6591744-6591894:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6596683-6596839:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6599693-6599896:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:6601839-6606071:1:exon

FAM169A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: FAM169A
product: family with sequence similarity 169 member A, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 29 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 97 samples with support for all annotated introns
transcript id: XM_027520023.1
SIO_010081: FAM169A
subclass of: SO_0000673
so part of: FAM169A
location: join(6541882..6541970,6560333..6560467,6561633..6561732,6562033..6562118,6564220..6564391,6581324..6581503,6585177..6585305,6587896..6588008,6591211..6591250,6591744..6591894,6596683..6596839,6599693..6599896,6601839..6606071)
location: region:6541882-6606071:1
so has part: feature:6541882-6541970:1:exon
so has part: feature:6560333-6560467:1:exon
so has part: feature:6561633-6561732:1:exon
so has part: feature:6562033-6562118:1:exon
so has part: feature:6564220-6564391:1:exon
so has part: feature:6581324-6581503:1:exon
so has part: feature:6585177-6585305:1:exon
so has part: feature:6587896-6588008:1:exon
so has part: feature:6591211-6591250:1:exon
so has part: feature:6591744-6591894:1:exon
so has part: feature:6596683-6596839:1:exon
so has part: feature:6599693-6599896:1:exon
so has part: feature:6601839-6606071:1:exon

position:6541882:1
position: 6541882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6541882-6541970:1:exon

position:6541970:1
position: 6541970
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6560333-6560467:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6561633-6561732:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6562033-6562118:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6564220-6564391:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6581324-6581503:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6585177-6585305:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6587896-6588008:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6591211-6591250:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6591744-6591894:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6596683-6596839:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6599693-6599896:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:6601839-6606071:1:exon

FAM169A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: FAM169A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: soluble lamin-associated protein of 75 kDa
translation: MAFPVDMLDNCSHEELENSAEDYMSDLRCGDPENPERFSLLNITIPISLSNVGFVPLYGGDQTQKVLALFAPEDSLTAVALYLADQWWAIDDIVKTSVPSREGLKQVRTLGERVVLYVLNRIIYRKQEMERNEIPFLCHSSTDYAKILWKKGEAIGFYSVKPTGSTCASFLTQSYQLPVLDTMFVRKKYRGKDFGLHMLEDFVDSFTEDALGLRYPLTSLMYIACNQYFEKYPGDHELLWEVEGVGHWYQRIPITRALQRETLKITAISQNEAKRSTSGEYSLASVPEYEARAEDSQSSEMQLTIDSLKDAFASTSEGHDKTPVSTRTRSSHLKRPKIGKRFQDSEFSSSQGEDEKTPQTSPTASVNKLESTARTSESSEEFLEEEPEQSVIEFEDESSDKDVQPAPETQPGLEKQEGEKESALEPMNGEIIDDTLKTSLITEEEDSTSEVLDEELKLQSFNSSEDSPNLAPLVVDSSQPLEGVAQDKTSHATDSETLLDESPSDDKGHTEEKLPLVSRKKAHFGSSDNVATIPNEDRSDSAFPNSVIAEFSEESIPENVSPNTTASLEDQGEEGVAEPQESSAALPQSSLIEVELEDVPFSQNAGQKNLSEEQSEASSEQLDQLTQSTEKTVDSSSEEIEVEVPVVDRRNLRRKAKGHKGPAKKKAKLT
SIO_010081: FAM169A
subclass of: SO_0000673
so part of: FAM169A
location: join(6560336..6560467,6561633..6561732,6562033..6562118,6564220..6564391,6581324..6581503,6585177..6585305,6587896..6588008,6591211..6591250,6591744..6591894,6596683..6596839,6599693..6599896,6601839..6602387)
location: region:6560336-6602387:1
so has part: feature:6560336-6560467:1:exon
so has part: feature:6561633-6561732:1:exon
so has part: feature:6562033-6562118:1:exon
so has part: feature:6564220-6564391:1:exon
so has part: feature:6581324-6581503:1:exon
so has part: feature:6585177-6585305:1:exon
so has part: feature:6587896-6588008:1:exon
so has part: feature:6591211-6591250:1:exon
so has part: feature:6591744-6591894:1:exon
so has part: feature:6596683-6596839:1:exon
so has part: feature:6599693-6599896:1:exon
so has part: feature:6601839-6602387:1:exon

XP_027375823.1
type: Protein
SIO_000068: ncbiprotein

position:6560336:1
position: 6560336
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6602387:1
position: 6602387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6560336-6560467:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6561633-6561732:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6562033-6562118:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6564220-6564391:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6581324-6581503:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6585177-6585305:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6587896-6588008:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6591211-6591250:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6591744-6591894:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6596683-6596839:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6599693-6599896:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6601839-6602387:1:exon

FAM169A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: FAM169A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: soluble lamin-associated protein of 75 kDa
translation: MAFPVDMLDNCSHEELENSAEDYMSDLRCGDPENPERFSLLNITIPISLSNVGFVPLYGGDQTQKVLALFAPEDSLTAVALYLADQWWAIDDIVKTSVPSREGLKQVRTLGERVVLYVLNRIIYRKQEMERNEIPFLCHSSTDYAKILWKKGEAIGFYSVKPTGSTCASFLTQSYQLPVLDTMFVRKKYRGKDFGLHMLEDFVDSFTEDALGLRYPLTSLMYIACNQYFEKYPGDHELLWEVEGVGHWYQRIPITRALQRETLKITAISQNEAKRSTSGEYSLASVPEYEARAEDSQSSEMQLTIDSLKDAFASTSEGHDKTPVSTRTRSSHLKRPKIGKRFQDSEFSSSQGEDEKTPQTSPTASVNKLESTARTSESSEEFLEEEPEQSVIEFEDESSDKDVQPAPETQPGLEKQEGEKESALEPMNGEIIDDTLKTSLITEEEDSTSEVLDEELKLQSFNSSEDSPNLAPLVVDSSQPLEGVAQDKTSHATDSETLLDESPSDDKGHTEEKLPLVSRKKAHFGSSDNVATIPNEDRSDSAFPNSVIAEFSEESIPENVSPNTTASLEDQGEEGVAEPQESSAALPQSSLIEVELEDVPFSQNAGQKNLSEEQSEASSEQLDQLTQSTEKTVDSSSEEIEVEVPVVDRRNLRRKAKGHKGPAKKKAKLT
SIO_010081: FAM169A
subclass of: SO_0000673
so part of: FAM169A
location: join(6560336..6560467,6561633..6561732,6562033..6562118,6564220..6564391,6581324..6581503,6585177..6585305,6587896..6588008,6591211..6591250,6591744..6591894,6596683..6596839,6599693..6599896,6601839..6602387)
location: region:6560336-6602387:1
so has part: feature:6560336-6560467:1:exon
so has part: feature:6561633-6561732:1:exon
so has part: feature:6562033-6562118:1:exon
so has part: feature:6564220-6564391:1:exon
so has part: feature:6581324-6581503:1:exon
so has part: feature:6585177-6585305:1:exon
so has part: feature:6587896-6588008:1:exon
so has part: feature:6591211-6591250:1:exon
so has part: feature:6591744-6591894:1:exon
so has part: feature:6596683-6596839:1:exon
so has part: feature:6599693-6599896:1:exon
so has part: feature:6601839-6602387:1:exon

XP_027375824.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6560336-6560467:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6561633-6561732:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6562033-6562118:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6564220-6564391:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6581324-6581503:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6585177-6585305:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6587896-6588008:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6591211-6591250:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6591744-6591894:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6596683-6596839:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6599693-6599896:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6601839-6602387:1:exon

FAM169A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: FAM169A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: soluble lamin-associated protein of 75 kDa
translation: MAFPVDMLDNCSHEELENSAEDYMSDLRCGDPENPERFSLLNITIPISLSNVGFVPLYGGDQTQKVLALFAPEDSLTAVALYLADQWWAIDDIVKTSVPSREGLKQVRTLGERVVLYVLNRIIYRKQEMERNEIPFLCHSSTDYAKILWKKGEAIGFYSVKPTGSTCASFLTQSYQLPVLDTMFVRKKYRGKDFGLHMLEDFVDSFTEDALGLRYPLTSLMYIACNQYFEKYPGDHELLWEVEGVGHWYQRIPITRALQRETLKITAISQNEAKRSTSGEYSLASVPEYEARAEDSQSSEMQLTIDSLKDAFASTSEGHDKTPVSTRTRSSHLKRPKIGKRFQDSEFSSSQGEDEKTPQTSPTASVNKLESTARTSESSEEFLEEEPEQSVIEFEDESSDKDVQPAPETQPGLEKQEGEKESALEPMNGEIIDDTLKTSLITEEEDSTSEVLDEELKLQSFNSSEDSPNLAPLVVDSSQPLEGVAQDKTSHATDSETLLDESPSDDKGHTEEKLPLVSRKKAHFGSSDNVATIPNEDRSDSAFPNSVIAEFSEESIPENVSPNTTASLEDQGEEGVAEPQESSAALPQSSLIEVELEDVPFSQNAGQKNLSEEQSEASSEQLDQLTQSTEKTVDSSSEEIEVEVPVVDRRNLRRKAKGHKGPAKKKAKLT
SIO_010081: FAM169A
subclass of: SO_0000673
so part of: FAM169A
location: join(6560336..6560467,6561633..6561732,6562033..6562118,6564220..6564391,6581324..6581503,6585177..6585305,6587896..6588008,6591211..6591250,6591744..6591894,6596683..6596839,6599693..6599896,6601839..6602387)
location: region:6560336-6602387:1
so has part: feature:6560336-6560467:1:exon
so has part: feature:6561633-6561732:1:exon
so has part: feature:6562033-6562118:1:exon
so has part: feature:6564220-6564391:1:exon
so has part: feature:6581324-6581503:1:exon
so has part: feature:6585177-6585305:1:exon
so has part: feature:6587896-6588008:1:exon
so has part: feature:6591211-6591250:1:exon
so has part: feature:6591744-6591894:1:exon
so has part: feature:6596683-6596839:1:exon
so has part: feature:6599693-6599896:1:exon
so has part: feature:6601839-6602387:1:exon

XP_027375826.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6560336-6560467:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6561633-6561732:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6562033-6562118:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6564220-6564391:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6581324-6581503:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6585177-6585305:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6587896-6588008:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6591211-6591250:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6591744-6591894:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6596683-6596839:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6599693-6599896:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6601839-6602387:1:exon

FAM169A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: FAM169A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: soluble lamin-associated protein of 75 kDa
translation: MAFPVDMLDNCSHEELENSAEDYMSDLRCGDPENPERFSLLNITIPISLSNVGFVPLYGGDQTQKVLALFAPEDSLTAVALYLADQWWAIDDIVKTSVPSREGLKQVRTLGERVVLYVLNRIIYRKQEMERNEIPFLCHSSTDYAKILWKKGEAIGFYSVKPTGSTCASFLTQSYQLPVLDTMFVRKKYRGKDFGLHMLEDFVDSFTEDALGLRYPLTSLMYIACNQYFEKYPGDHELLWEVEGVGHWYQRIPITRALQRETLKITAISQNEAKRSTSGEYSLASVPEYEARAEDSQSSEMQLTIDSLKDAFASTSEGHDKTPVSTRTRSSHLKRPKIGKRFQDSEFSSSQGEDEKTPQTSPTASVNKLESTARTSESSEEFLEEEPEQSVIEFEDESSDKDVQPAPETQPGLEKQEGEKESALEPMNGEIIDDTLKTSLITEEEDSTSEVLDEELKLQSFNSSEDSPNLAPLVVDSSQPLEGVAQDKTSHATDSETLLDESPSDDKGHTEEKLPLVSRKKAHFGSSDNVATIPNEDRSDSAFPNSVIAEFSEESIPENVSPNTTASLEDQGEEGVAEPQESSAALPQSSLIEVELEDVPFSQNAGQKNLSEEQSEASSEQLDQLTQSTEKTVDSSSEEIEVEVPVVDRRNLRRKAKGHKGPAKKKAKLT
SIO_010081: FAM169A
subclass of: SO_0000673
so part of: FAM169A
location: join(6560336..6560467,6561633..6561732,6562033..6562118,6564220..6564391,6581324..6581503,6585177..6585305,6587896..6588008,6591211..6591250,6591744..6591894,6596683..6596839,6599693..6599896,6601839..6602387)
location: region:6560336-6602387:1
so has part: feature:6560336-6560467:1:exon
so has part: feature:6561633-6561732:1:exon
so has part: feature:6562033-6562118:1:exon
so has part: feature:6564220-6564391:1:exon
so has part: feature:6581324-6581503:1:exon
so has part: feature:6585177-6585305:1:exon
so has part: feature:6587896-6588008:1:exon
so has part: feature:6591211-6591250:1:exon
so has part: feature:6591744-6591894:1:exon
so has part: feature:6596683-6596839:1:exon
so has part: feature:6599693-6599896:1:exon
so has part: feature:6601839-6602387:1:exon

XP_027375827.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6560336-6560467:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6561633-6561732:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6562033-6562118:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6564220-6564391:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6581324-6581503:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6585177-6585305:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6587896-6588008:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6591211-6591250:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6591744-6591894:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6596683-6596839:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6599693-6599896:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6601839-6602387:1:exon

NSA2
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: NSA2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(6607034..6614238)
location: region:6607034-6614238:-1
so has part: feature:6607034-6614238:-1:exon
subclass of: SO_0000010

113879211
type: Gene
SIO_000068: ncbigene

position:6607034:-1
position: 6607034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6614238:-1
position: 6614238
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6607034-6614238:-1:exon

NSA2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: NSA2
product: NSA2, ribosome biogenesis homolog
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 32 ESTs, 3 long SRA reads, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 217 samples with support for all annotated introns
transcript id: XM_027520511.1
SIO_010081: NSA2
subclass of: SO_0000673
so part of: NSA2
location: complement(join(6607034..6607286,6608644..6608836,6610188..6610367,6611650..6611800,6611893..6612080,6614045..6614238))
location: region:6607034-6614238:-1
so has part: feature:6614045-6614238:-1:exon
so has part: feature:6611893-6612080:-1:exon
so has part: feature:6611650-6611800:-1:exon
so has part: feature:6610188-6610367:-1:exon
so has part: feature:6608644-6608836:-1:exon
so has part: feature:6607034-6607286:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6614045-6614238:-1:exon

position:6614045:-1
position: 6614045
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6611893-6612080:-1:exon

position:6611893:-1
position: 6611893
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6612080:-1
position: 6612080
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6611650-6611800:-1:exon

position:6611650:-1
position: 6611650
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6611800:-1
position: 6611800
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6610188-6610367:-1:exon

position:6610188:-1
position: 6610188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6610367:-1
position: 6610367
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6608644-6608836:-1:exon

position:6608644:-1
position: 6608644
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6608836:-1
position: 6608836
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:6607034-6607286:-1:exon

position:6607286:-1
position: 6607286
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

NSA2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: NSA2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ribosome biogenesis protein NSA2 homolog
translation: MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPENDGCINAVLLV
SIO_010081: NSA2
subclass of: SO_0000673
so part of: NSA2
location: complement(join(6607219..6607286,6608644..6608836,6610188..6610367,6611650..6611800,6611893..6612080,6614045..6614047))
location: region:6607219-6614047:-1
so has part: feature:6614045-6614047:-1:exon
so has part: feature:6611893-6612080:-1:exon
so has part: feature:6611650-6611800:-1:exon
so has part: feature:6610188-6610367:-1:exon
so has part: feature:6608644-6608836:-1:exon
so has part: feature:6607219-6607286:-1:exon

XP_027376312.1
type: Protein
SIO_000068: ncbiprotein

position:6607219:-1
position: 6607219
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6614047:-1
position: 6614047
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6614045-6614047:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6611893-6612080:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6611650-6611800:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6610188-6610367:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6608644-6608836:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6607219-6607286:-1:exon

GFM2
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: GFM2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6614262..6684900
location: region:6614262-6684900:1
so has part: feature:6614262-6684900:1:exon
subclass of: SO_0000010

113879209
type: Gene
SIO_000068: ncbigene

position:6614262:1
position: 6614262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6684900:1
position: 6684900
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6614262-6684900:1:exon

GFM2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: GFM2
product: G elongation factor mitochondrial 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 46 ESTs, 2 long SRA reads, 4 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 195 samples with support for all annotated introns
transcript id: XM_027520507.1
SIO_010081: GFM2
subclass of: SO_0000673
so part of: GFM2
location: join(6614262..6614454,6621386..6621470,6623683..6623767,6625171..6625228,6625673..6625770,6629200..6629325,6630021..6630109,6634918..6635006,6636686..6636746,6637010..6637189,6640938..6641018,6642325..6642473,6643909..6644049,6644139..6644238,6644959..6645148,6647659..6647735,6650904..6651042,6655477..6655656,6656887..6657002,6664777..6664959,6665408..6665874)
location: region:6614262-6665874:1
so has part: feature:6614262-6614454:1:exon
so has part: feature:6621386-6621470:1:exon
so has part: feature:6623683-6623767:1:exon
so has part: feature:6625171-6625228:1:exon
so has part: feature:6625673-6625770:1:exon
so has part: feature:6629200-6629325:1:exon
so has part: feature:6630021-6630109:1:exon
so has part: feature:6634918-6635006:1:exon
so has part: feature:6636686-6636746:1:exon
so has part: feature:6637010-6637189:1:exon
so has part: feature:6640938-6641018:1:exon
so has part: feature:6642325-6642473:1:exon
so has part: feature:6643909-6644049:1:exon
so has part: feature:6644139-6644238:1:exon
so has part: feature:6644959-6645148:1:exon
so has part: feature:6647659-6647735:1:exon
so has part: feature:6650904-6651042:1:exon
so has part: feature:6655477-6655656:1:exon
so has part: feature:6656887-6657002:1:exon
so has part: feature:6664777-6664959:1:exon
so has part: feature:6665408-6665874:1:exon

position:6665874:1
position: 6665874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6614262-6614454:1:exon

position:6614454:1
position: 6614454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6621386-6621470:1:exon

position:6621386:1
position: 6621386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6621470:1
position: 6621470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6623683-6623767:1:exon

position:6623683:1
position: 6623683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6623767:1
position: 6623767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6625171-6625228:1:exon

position:6625171:1
position: 6625171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6625228:1
position: 6625228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6625673-6625770:1:exon

position:6625673:1
position: 6625673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6625770:1
position: 6625770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:6629200-6629325:1:exon

position:6629200:1
position: 6629200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6629325:1
position: 6629325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:6630021-6630109:1:exon

position:6630021:1
position: 6630021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6630109:1
position: 6630109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:6634918-6635006:1:exon

position:6634918:1
position: 6634918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6635006:1
position: 6635006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:6636686-6636746:1:exon

position:6636686:1
position: 6636686
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6636746:1
position: 6636746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:6637010-6637189:1:exon

position:6637010:1
position: 6637010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6637189:1
position: 6637189
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:6640938-6641018:1:exon

position:6640938:1
position: 6640938
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6641018:1
position: 6641018
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:6642325-6642473:1:exon

position:6642325:1
position: 6642325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6642473:1
position: 6642473
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:6643909-6644049:1:exon

position:6643909:1
position: 6643909
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6644049:1
position: 6644049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:6644139-6644238:1:exon

position:6644139:1
position: 6644139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6644238:1
position: 6644238
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:6644959-6645148:1:exon

position:6644959:1
position: 6644959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6645148:1
position: 6645148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:6647659-6647735:1:exon

position:6647659:1
position: 6647659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6647735:1
position: 6647735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:6650904-6651042:1:exon

position:6650904:1
position: 6650904
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6651042:1
position: 6651042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:6655477-6655656:1:exon

position:6655477:1
position: 6655477
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6655656:1
position: 6655656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:6656887-6657002:1:exon

position:6656887:1
position: 6656887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6657002:1
position: 6657002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:6664777-6664959:1:exon

position:6664777:1
position: 6664777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6664959:1
position: 6664959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:6665408-6665874:1:exon

position:6665408:1
position: 6665408
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

GFM2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: GFM2
product: G elongation factor mitochondrial 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 ESTs, 1 long SRA read, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 49 samples with support for all annotated introns
transcript id: XM_027520508.1
SIO_010081: GFM2
subclass of: SO_0000673
so part of: GFM2
location: join(6614290..6614454,6621386..6621470,6623683..6623767,6625171..6625228,6625673..6625770,6629200..6629325,6630021..6630109,6634918..6635006,6636686..6636746,6637010..6637189,6640938..6641018,6642325..6642473,6643909..6644049,6644139..6644238,6644959..6645148,6647659..6647735,6650904..6651042,6655477..6655656,6656887..6657002,6684450..6684900)
location: region:6614290-6684900:1
so has part: feature:6614290-6614454:1:exon
so has part: feature:6621386-6621470:1:exon
so has part: feature:6623683-6623767:1:exon
so has part: feature:6625171-6625228:1:exon
so has part: feature:6625673-6625770:1:exon
so has part: feature:6629200-6629325:1:exon
so has part: feature:6630021-6630109:1:exon
so has part: feature:6634918-6635006:1:exon
so has part: feature:6636686-6636746:1:exon
so has part: feature:6637010-6637189:1:exon
so has part: feature:6640938-6641018:1:exon
so has part: feature:6642325-6642473:1:exon
so has part: feature:6643909-6644049:1:exon
so has part: feature:6644139-6644238:1:exon
so has part: feature:6644959-6645148:1:exon
so has part: feature:6647659-6647735:1:exon
so has part: feature:6650904-6651042:1:exon
so has part: feature:6655477-6655656:1:exon
so has part: feature:6656887-6657002:1:exon
so has part: feature:6684450-6684900:1:exon

position:6614290:1
position: 6614290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6614290-6614454:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6621386-6621470:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6623683-6623767:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6625171-6625228:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6625673-6625770:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6629200-6629325:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6630021-6630109:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6634918-6635006:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6636686-6636746:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6637010-6637189:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6640938-6641018:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6642325-6642473:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:6643909-6644049:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:6644139-6644238:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:6644959-6645148:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:6647659-6647735:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:6650904-6651042:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:6655477-6655656:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:6656887-6657002:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:6684450-6684900:1:exon

position:6684450:1
position: 6684450
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

GFM2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: GFM2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ribosome-releasing factor 2, mitochondrial isoform X2
translation: MSNLRIFAVNQKKISSLHYFNNMCSSKIRASLKRLKLHVLLGRNYSSLPGLIGNDIKSLHSIINPPIAKIRNIGIMAHIDAGKTTTTERILYYSGYTRSLGDVDDGDTVTDFMAQERERGITIQSAAVTFDWKGYRINLIDTPGHVDFTLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKHKVPRICFLNKMDKIGASFNYAVESIREKLKAKPLLLQLPIGEGKAFKGVVDVVRTEKLLWNPNSDDGKDFERKPLLEMSDPKLLKETTEARNALIEQVADLDDEFADLVLGEFSENFDLLPAEKLQTAIHRVTLAQTAVPVLCGSALKNKGVQPLLDAITMYLPSPEERNYEFLQWYKGDLCALAFKVLHDKQRGPLVFMRIYSGMLKPQTAIHNINGNCTERVSRLLLPFADQHIEIPLLTAGNIALTVGLKHTATGDTIVSSRSSALAASRRAKREGEKKQKENNEAERLLLAGVEIPEPVFFCTIEPPSMAKQPDLDHALKCLQREDPSLKVKLDPDSGQTVLCGMGELHIEIIHDRIKREYGLETYLGPLQVAYREAILNSIRATDTLDRTLGDKRHLVTVELEAKPVETSSLLPVIEYAASVAGDLSQASREAFENGVHSACLQGPLLGSPVQDVAVTLHSLVIHPGTSTTMISACVSRCLQKVIIVCVVALFLNFS
SIO_010081: GFM2
subclass of: SO_0000673
so part of: GFM2
location: join(6621408..6621470,6623683..6623767,6625171..6625228,6625673..6625770,6629200..6629325,6630021..6630109,6634918..6635006,6636686..6636746,6637010..6637189,6640938..6641018,6642325..6642473,6643909..6644049,6644139..6644238,6644959..6645148,6647659..6647735,6650904..6651042,6655477..6655656,6656887..6657002,6684450..6684494)
location: region:6621408-6684494:1
so has part: feature:6621408-6621470:1:exon
so has part: feature:6623683-6623767:1:exon
so has part: feature:6625171-6625228:1:exon
so has part: feature:6625673-6625770:1:exon
so has part: feature:6629200-6629325:1:exon
so has part: feature:6630021-6630109:1:exon
so has part: feature:6634918-6635006:1:exon
so has part: feature:6636686-6636746:1:exon
so has part: feature:6637010-6637189:1:exon
so has part: feature:6640938-6641018:1:exon
so has part: feature:6642325-6642473:1:exon
so has part: feature:6643909-6644049:1:exon
so has part: feature:6644139-6644238:1:exon
so has part: feature:6644959-6645148:1:exon
so has part: feature:6647659-6647735:1:exon
so has part: feature:6650904-6651042:1:exon
so has part: feature:6655477-6655656:1:exon
so has part: feature:6656887-6657002:1:exon
so has part: feature:6684450-6684494:1:exon

XP_027376309.1
type: Protein
SIO_000068: ncbiprotein

position:6621408:1
position: 6621408
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6684494:1
position: 6684494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6621408-6621470:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6623683-6623767:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6625171-6625228:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6625673-6625770:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6629200-6629325:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6630021-6630109:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6634918-6635006:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6636686-6636746:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6637010-6637189:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6640938-6641018:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6642325-6642473:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6643909-6644049:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:6644139-6644238:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:6644959-6645148:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:6647659-6647735:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:6650904-6651042:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:6655477-6655656:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:6656887-6657002:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:6684450-6684494:1:exon

GFM2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: GFM2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ribosome-releasing factor 2, mitochondrial isoform X1
translation: MSNLRIFAVNQKKISSLHYFNNMCSSKIRASLKRLKLHVLLGRNYSSLPGLIGNDIKSLHSIINPPIAKIRNIGIMAHIDAGKTTTTERILYYSGYTRSLGDVDDGDTVTDFMAQERERGITIQSAAVTFDWKGYRINLIDTPGHVDFTLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKHKVPRICFLNKMDKIGASFNYAVESIREKLKAKPLLLQLPIGEGKAFKGVVDVVRTEKLLWNPNSDDGKDFERKPLLEMSDPKLLKETTEARNALIEQVADLDDEFADLVLGEFSENFDLLPAEKLQTAIHRVTLAQTAVPVLCGSALKNKGVQPLLDAITMYLPSPEERNYEFLQWYKGDLCALAFKVLHDKQRGPLVFMRIYSGMLKPQTAIHNINGNCTERVSRLLLPFADQHIEIPLLTAGNIALTVGLKHTATGDTIVSSRSSALAASRRAKREGEKKQKENNEAERLLLAGVEIPEPVFFCTIEPPSMAKQPDLDHALKCLQREDPSLKVKLDPDSGQTVLCGMGELHIEIIHDRIKREYGLETYLGPLQVAYREAILNSIRATDTLDRTLGDKRHLVTVELEAKPVETSSLLPVIEYAASVAGDLSQASREAFENGVHSACLQGPLLGSPVQDVAVTLHSLVIHPGTSTTMISACVSRCLQKALKKADKQILEPLMNLEVTVSREYLSPVLADLAQRRGNIQEIQSRQDNKVVIGYVPLAEIMGYSTVLRTLTSGSATFALELSNYQAMNPQDQSTLLSQRHGLS
SIO_010081: GFM2
subclass of: SO_0000673
so part of: GFM2
location: join(6621408..6621470,6623683..6623767,6625171..6625228,6625673..6625770,6629200..6629325,6630021..6630109,6634918..6635006,6636686..6636746,6637010..6637189,6640938..6641018,6642325..6642473,6643909..6644049,6644139..6644238,6644959..6645148,6647659..6647735,6650904..6651042,6655477..6655656,6656887..6657002,6664777..6664959,6665408..6665536)
location: region:6621408-6665536:1
so has part: feature:6621408-6621470:1:exon
so has part: feature:6623683-6623767:1:exon
so has part: feature:6625171-6625228:1:exon
so has part: feature:6625673-6625770:1:exon
so has part: feature:6629200-6629325:1:exon
so has part: feature:6630021-6630109:1:exon
so has part: feature:6634918-6635006:1:exon
so has part: feature:6636686-6636746:1:exon
so has part: feature:6637010-6637189:1:exon
so has part: feature:6640938-6641018:1:exon
so has part: feature:6642325-6642473:1:exon
so has part: feature:6643909-6644049:1:exon
so has part: feature:6644139-6644238:1:exon
so has part: feature:6644959-6645148:1:exon
so has part: feature:6647659-6647735:1:exon
so has part: feature:6650904-6651042:1:exon
so has part: feature:6655477-6655656:1:exon
so has part: feature:6656887-6657002:1:exon
so has part: feature:6664777-6664959:1:exon
so has part: feature:6665408-6665536:1:exon

XP_027376308.1
type: Protein
SIO_000068: ncbiprotein

position:6665536:1
position: 6665536
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6621408-6621470:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6623683-6623767:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6625171-6625228:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6625673-6625770:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6629200-6629325:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6630021-6630109:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6634918-6635006:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6636686-6636746:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6637010-6637189:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6640938-6641018:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6642325-6642473:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6643909-6644049:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:6644139-6644238:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:6644959-6645148:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:6647659-6647735:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:6650904-6651042:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:6655477-6655656:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:6656887-6657002:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:6664777-6664959:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:6665408-6665536:1:exon

HEXB
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: HEXB
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(6665842..6698174)
location: region:6665842-6698174:-1
so has part: feature:6665842-6698174:-1:exon
subclass of: SO_0000010

113879210
type: Gene
SIO_000068: ncbigene

position:6665842:-1
position: 6665842
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6698174:-1
position: 6698174
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6665842-6698174:-1:exon

HEXB
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: HEXB
product: hexosaminidase subunit beta, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 56 ESTs, 1 long SRA read, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 188 samples with support for all annotated introns
transcript id: XM_027520510.1
SIO_010081: HEXB
subclass of: SO_0000673
so part of: HEXB
location: complement(join(6665842..6666012,6666453..6666557,6666715..6666805,6667791..6667965,6669136..6669208,6671512..6671598,6672223..6672403,6674057..6674186,6676293..6676394,6679890..6680000,6680261..6680307,6685232..6685297,6690616..6690761,6697711..6698174))
location: region:6665842-6698174:-1
so has part: feature:6697711-6698174:-1:exon
so has part: feature:6690616-6690761:-1:exon
so has part: feature:6685232-6685297:-1:exon
so has part: feature:6680261-6680307:-1:exon
so has part: feature:6679890-6680000:-1:exon
so has part: feature:6676293-6676394:-1:exon
so has part: feature:6674057-6674186:-1:exon
so has part: feature:6672223-6672403:-1:exon
so has part: feature:6671512-6671598:-1:exon
so has part: feature:6669136-6669208:-1:exon
so has part: feature:6667791-6667965:-1:exon
so has part: feature:6666715-6666805:-1:exon
so has part: feature:6666453-6666557:-1:exon
so has part: feature:6665842-6666012:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6697711-6698174:-1:exon

position:6697711:-1
position: 6697711
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6690616-6690761:-1:exon

position:6690616:-1
position: 6690616
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6690761:-1
position: 6690761
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6685232-6685297:-1:exon

position:6685232:-1
position: 6685232
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6685297:-1
position: 6685297
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6680261-6680307:-1:exon

position:6680261:-1
position: 6680261
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6680307:-1
position: 6680307
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6679890-6680000:-1:exon

position:6679890:-1
position: 6679890
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6680000:-1
position: 6680000
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:6676293-6676394:-1:exon

position:6676293:-1
position: 6676293
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6676394:-1
position: 6676394
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:6674057-6674186:-1:exon

position:6674057:-1
position: 6674057
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6674186:-1
position: 6674186
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:6672223-6672403:-1:exon

position:6672223:-1
position: 6672223
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6672403:-1
position: 6672403
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:6671512-6671598:-1:exon

position:6671512:-1
position: 6671512
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6671598:-1
position: 6671598
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:6669136-6669208:-1:exon

position:6669136:-1
position: 6669136
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6669208:-1
position: 6669208
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:6667791-6667965:-1:exon

position:6667791:-1
position: 6667791
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6667965:-1
position: 6667965
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:6666715-6666805:-1:exon

position:6666715:-1
position: 6666715
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6666805:-1
position: 6666805
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:6666453-6666557:-1:exon

position:6666453:-1
position: 6666453
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6666557:-1
position: 6666557
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:6665842-6666012:-1:exon

position:6666012:-1
position: 6666012
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

HEXB
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 30522
gene: HEXB
product: hexosaminidase subunit beta, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 36 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 140 samples with support for all annotated introns
transcript id: XM_027520509.1
SIO_010081: HEXB
subclass of: SO_0000673
so part of: HEXB
location: complement(join(6665842..6666012,6666453..6666557,6667791..6667965,6669136..6669208,6671512..6671598,6672223..6672403,6674057..6674186,6676293..6676394,6679890..6680000,6680261..6680307,6685232..6685297,6690616..6690761,6697711..6698091))
location: region:6665842-6698091:-1
so has part: feature:6697711-6698091:-1:exon
so has part: feature:6690616-6690761:-1:exon
so has part: feature:6685232-6685297:-1:exon
so has part: feature:6680261-6680307:-1:exon
so has part: feature:6679890-6680000:-1:exon
so has part: feature:6676293-6676394:-1:exon
so has part: feature:6674057-6674186:-1:exon
so has part: feature:6672223-6672403:-1:exon
so has part: feature:6671512-6671598:-1:exon
so has part: feature:6669136-6669208:-1:exon
so has part: feature:6667791-6667965:-1:exon
so has part: feature:6666453-6666557:-1:exon
so has part: feature:6665842-6666012:-1:exon

position:6698091:-1
position: 6698091
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6697711-6698091:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6690616-6690761:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6685232-6685297:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6680261-6680307:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6679890-6680000:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6676293-6676394:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6674057-6674186:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6672223-6672403:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6671512-6671598:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6669136-6669208:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6667791-6667965:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6666453-6666557:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:6665842-6666012:-1:exon

HEXB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: HEXB
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: beta-hexosaminidase subunit beta isoform X2
translation: MEQRGLARLRLPGLLALLAALAARTPRVSASGDLNLWPLPVSLKTTPRLFYLSPGNFFFGHSPTSKAGPSCAVLQEAFRRYYDYIFGFYKWHHGHNKIPSEMELQKLEVSVIMDPECDSFPSITSDESYTLLVKGPVATLTANRVWGVLRGLETFSQLIYQDSYGTFTANESNIVDSPRFPHRGILIDTSRHFLPVKTILKTLDAMAFNKFNVLHWHIVDDQSFPYQSISFPELSNKGSYSLSHVYTPNDVRTVIEYARLRGIRVLPEFDSPGHTESWGKGQKDLLTPCYHAREPSGTFGPINPILNSTYSFLSKLFKEISTVFPDEFIHLGGDEVNFNCWESNPAVLNFMMNKGFGKNFKKLQSFYMQMVLDMISTMKKRSIVWQEVYDDEGKLLPGTVVQVWKMGDFYKELENITAAGFPVIISAPWYLDVINYGQDWRQYYSVKPLNFAGTPEQKQLVIGGEACIWGEYVDATNLTPRLWPRASAVGERLWSPQEVTDLDDAYRRLTRHRCRMVRRGIAAQPLFTGYCEHEGRM
SIO_010081: HEXB
subclass of: SO_0000673
so part of: HEXB
location: complement(join(6665952..6666012,6666453..6666557,6666715..6666805,6667791..6667965,6669136..6669208,6671512..6671598,6672223..6672403,6674057..6674186,6676293..6676394,6679890..6680000,6680261..6680307,6685232..6685297,6690616..6690761,6697711..6697949))
location: region:6665952-6697949:-1
so has part: feature:6697711-6697949:-1:exon
so has part: feature:6690616-6690761:-1:exon
so has part: feature:6685232-6685297:-1:exon
so has part: feature:6680261-6680307:-1:exon
so has part: feature:6679890-6680000:-1:exon
so has part: feature:6676293-6676394:-1:exon
so has part: feature:6674057-6674186:-1:exon
so has part: feature:6672223-6672403:-1:exon
so has part: feature:6671512-6671598:-1:exon
so has part: feature:6669136-6669208:-1:exon
so has part: feature:6667791-6667965:-1:exon
so has part: feature:6666715-6666805:-1:exon
so has part: feature:6666453-6666557:-1:exon
so has part: feature:6665952-6666012:-1:exon

XP_027376311.1
type: Protein
SIO_000068: ncbiprotein

position:6665952:-1
position: 6665952
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6697949:-1
position: 6697949
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6697711-6697949:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6690616-6690761:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6685232-6685297:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6680261-6680307:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6679890-6680000:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6676293-6676394:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6674057-6674186:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6672223-6672403:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6671512-6671598:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6669136-6669208:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6667791-6667965:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6666715-6666805:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:6666453-6666557:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:6665952-6666012:-1:exon

HEXB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 30522
gene: HEXB
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: beta-hexosaminidase subunit beta isoform X1
translation: MEQRGLARLRLPGLLALLAALAARTPRVSASGDLNLWPLPVSLKTTPRLFYLSPGNFFFGHSPTSKAGPSCAVLQEAFRRYYDYIFGFYKWHHGHNKIPSEMELQKLEVSVIMDPECDSFPSITSDESYTLLVKGPVATLTANRVWGVLRGLETFSQLIYQDSYGTFTANESNIVDSPRFPHRGILIDTSRHFLPVKTILKTLDAMAFNKFNVLHWHIVDDQSFPYQSISFPELSNKGSYSLSHVYTPNDVRTVIEYARLRGIRVLPEFDSPGHTESWGKGQKDLLTPCYHAREPSGTFGPINPILNSTYSFLSKLFKEISTVFPDEFIHLGGDEVNFNCWESNPAVLNFMMNKGFGKNFKKLQSFYMQMVLDMISTMKKRSIVWQEVYDDEGKLLPGTVVQVWKMGDFYKELENITAAGFPVIISAPWYLDVINYGQDWRQYYSVKPLNFAGLGRVLLVRDSGVPRKSQT
SIO_010081: HEXB
subclass of: SO_0000673
so part of: HEXB
location: complement(join(6666499..6666557,6667791..6667965,6669136..6669208,6671512..6671598,6672223..6672403,6674057..6674186,6676293..6676394,6679890..6680000,6680261..6680307,6685232..6685297,6690616..6690761,6697711..6697949))
location: region:6666499-6697949:-1
so has part: feature:6697711-6697949:-1:exon
so has part: feature:6690616-6690761:-1:exon
so has part: feature:6685232-6685297:-1:exon
so has part: feature:6680261-6680307:-1:exon
so has part: feature:6679890-6680000:-1:exon
so has part: feature:6676293-6676394:-1:exon
so has part: feature:6674057-6674186:-1:exon
so has part: feature:6672223-6672403:-1:exon
so has part: feature:6671512-6671598:-1:exon
so has part: feature:6669136-6669208:-1:exon
so has part: feature:6667791-6667965:-1:exon
so has part: feature:6666499-6666557:-1:exon

XP_027376310.1
type: Protein
SIO_000068: ncbiprotein

position:6666499:-1
position: 6666499
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6697711-6697949:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6690616-6690761:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6685232-6685297:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6680261-6680307:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6679890-6680000:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6676293-6676394:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6674057-6674186:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6672223-6672403:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6671512-6671598:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6669136-6669208:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6667791-6667965:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6666499-6666557:-1:exon

LOC113879069
type: Gene
subclass of: SO_0000704
RO_0002162: 30522
gene: LOC113879069
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6704544..6739456
location: region:6704544-6739456:1
so has part: feature:6704544-6739456:1:exon
subclass of: SO_0000010

113879069
type: Gene
SIO_000068: ncbigene