Stutzerimonas decontaminans strain 19SMN4 plasmid pLIB119, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Stutzerimonas.
Complete genome sequence of Pseudomonas stutzeri 19SMN4
Submitted (24-MAR-2014) Microbiology, Department of Biology, Univesitat de les Illes Balears (UIB), Carretera de Valldemossa km 7.5, Palma de Mallorca, Illes Balears 07122, Spain
REFSEQ INFORMATION: The reference sequence is identical to\nCP007510.1.\nSource bacteria/DNA available from Microbiology, Department of\nBiology, University of Balearic Islands (UIB).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 13-FEB-2014\nAssembly Method :: Newbler v. 2.9; Celera Assembler v. 8.0\nAssembly Name :: 19SMN4_01\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 50.0x\nSequencing Technology :: Illumina; Celera Assembler\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/31/2022 17:45:41\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,547\nCDSs (total) :: 4,470\nGenes (coding) :: 4,410\nCDSs (with protein) :: 4,410\nGenes (RNA) :: 77\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 60\nncRNAs :: 5\nPseudo Genes (total) :: 60\nCDSs (without protein) :: 60\nPseudo Genes (ambiguous residues) :: 0 of 60\nPseudo Genes (frameshifted) :: 24 of 60\nPseudo Genes (incomplete) :: 43 of 60\nPseudo Genes (internal stop) :: 8 of 60\nPseudo Genes (multiple problems) :: 12 of 60\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Stutzerimonas decontaminans
COORDINATES: similar to AA sequence:RefSeq:WP_014589608.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025085.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: similar to AA sequence:RefSeq:WP_020308204.1
RNA-guided endonuclease TnpB family protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_019677501.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_019406700.1
COORDINATES: protein motif:HMM:NF013015.2
COORDINATES: similar to AA sequence:RefSeq:WP_086558097.1
COORDINATES: similar to AA sequence:RefSeq:WP_003460139.1
IS21-like element IS1474 family helper ATPase IstB
COORDINATES: protein motif:HMM:NF023227.2
COORDINATES: protein motif:HMM:NF023168.2
COORDINATES: protein motif:HMM:NF016724.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007913140.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010452730.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
type II toxin-antitoxin system MqsA family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_054926070.1
COORDINATES: similar to AA sequence:RefSeq:WP_011534057.1
COORDINATES: similar to AA sequence:RefSeq:WP_131199606.1
multidrug efflux RND transporter outer membrane channel subunit TbtM
COORDINATES: similar to AA sequence:RefSeq:WP_131199605.1
multidrug efflux RND transporter permease subunit TbtB
COORDINATES: similar to AA sequence:RefSeq:WP_131199604.1
multidrug efflux RND transporter periplasmic adaptor subunit TbtA
COORDINATES: similar to AA sequence:RefSeq:WP_017519866.1
COORDINATES: similar to AA sequence:RefSeq:WP_007957356.1
COORDINATES: similar to AA sequence:RefSeq:WP_017362232.1
GO:0003824 - catalytic activity [Evidence IEA]
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011533451.1
COORDINATES: similar to AA sequence:RefSeq:WP_009684363.1
COORDINATES: protein motif:HMM:NF021255.2
COORDINATES: similar to AA sequence:RefSeq:WP_019406424.1
COORDINATES: similar to AA sequence:RefSeq:WP_007162521.1
COORDINATES: similar to AA sequence:RefSeq:WP_017362245.1
COORDINATES: protein motif:HMM:NF013658.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611570.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: nucleotide motif:Rfam:14.4:RF01497
AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_015277497.1
COORDINATES: similar to AA sequence:RefSeq:WP_014819640.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014819639.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003292052.1
naphthalene 1,2-dioxygenase system ferredoxin NdoA
COORDINATES: similar to AA sequence:RefSeq:WP_020307250.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003292055.1
aromatic-ring-hydroxylating dioxygenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_014819636.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
3-(cis-5,6-dihydroxycyclohexa-1, 3-dien-1-yl)propanoate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_011117403.1
COORDINATES: similar to AA sequence:RefSeq:WP_011475381.1
COORDINATES: similar to AA sequence:RefSeq:WP_014819633.1
GO:0016829 - lyase activity [Evidence IEA]
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009399909.1
2-hydroxychromene-2-carboxylate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_020309248.1
outer membrane protein transport protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611534.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003449170.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019689138.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011077862.1
COORDINATES: similar to AA sequence:RefSeq:WP_003292084.1
IS5-like element ISAch1 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_010955146.1
COORDINATES: similar to AA sequence:RefSeq:WP_014287300.1
COORDINATES: similar to AA sequence:RefSeq:WP_009397177.1
COORDINATES: similar to AA sequence:RefSeq:WP_003292091.1
2Fe-2S iron-sulfur cluster binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011005909.1
GO:0018577 - catechol 2,3-dioxygenase activity [Evidence IEA]
GO:0009712 - catechol-containing compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012699539.1
GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
2-hydroxymuconic semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_003292095.1
COORDINATES: similar to AA sequence:RefSeq:WP_017243903.1
COORDINATES: similar to AA sequence:RefSeq:WP_003292099.1
GO:0008774 - acetaldehyde dehydrogenase (acetylating) activity [Evidence IEA]
acetaldehyde dehydrogenase (acetylating)
COORDINATES: similar to AA sequence:RefSeq:WP_003450283.1
GO:0008701 - 4-hydroxy-2-oxovalerate aldolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004574814.1
GO:0047437 - 4-oxalocrotonate decarboxylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003292102.1
COORDINATES: similar to AA sequence:RefSeq:WP_017849597.1
COORDINATES: similar to AA sequence:RefSeq:WP_011002488.1
COORDINATES: similar to AA sequence:RefSeq:WP_009397186.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611906.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019406672.1
COORDINATES: similar to AA sequence:RefSeq:WP_020308217.1
COORDINATES: similar to AA sequence:RefSeq:WP_003435832.1
COORDINATES: similar to AA sequence:RefSeq:WP_015268962.1
type II toxin-antitoxin system ChpB family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_008054961.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020308233.1
COORDINATES: similar to AA sequence:RefSeq:WP_019406676.1
COORDINATES: similar to AA sequence:RefSeq:WP_019406679.1
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_013959444.1
COORDINATES: protein motif:HMM:NF017528.2
COORDINATES: similar to AA sequence:RefSeq:WP_019406685.1
histone-like nucleoid-structuring protein, MvaT/MvaU family
COORDINATES: protein motif:HMM:NF020125.2
COORDINATES: similar to AA sequence:RefSeq:WP_019406687.1
COORDINATES: protein motif:HMM:NF012376.2
GO:0016787 - hydrolase activity [Evidence IEA]
TraR/DksA family transcriptional regulator