Epinephelus moara mitochondrion, complete genome.
type: Entry
definition: Epinephelus moara mitochondrion, complete genome.
sequence version: NC_017891.1
sequence date: 2023-04-03
sequence: sequence
division: VRT
label: NC_017891.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Epinephelus moara (kelp grouper)
organism: Epinephelus moara
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Serranoidei; Serranidae; Epinephelinae; Epinephelini; Epinephelus.
reference: 1
references: 23639162
reference: 2
reference: 3
comment: PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to JQ518290.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16696
topology: circular
so has quality: SO_0000988
location: 1..16696
location: region:1-16696:1
RO_0002162: 300413

NC_017891
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: Epinephelus moara: a valid species of the family Epinephelidae (Pisces: Perciformes)
author: Liu, M.
author: Li, J.L.
author: Ding, S.X.
author: Liu, Z.Q.
journal: J. Fish Biol.
volume: 82
issue: 5
pages: 1684-1699
year: 2013
pubmed: 23639162

23639162
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (09-MAY-2012) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Liu, M.
author: Li, J.-L.
author: Ding, S.-X.
author: Liu, Z.-Q.
journal: Submitted (28-JAN-2012) State Key Laboratory of Marine Environmental Science and Laboratory of Marine Biodiversity and Global Change, Xiamen University, College of Ocean and Earth, 182 Daxue Road, Xiamen, Fujian 361005, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16696:1
position: 16696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16696:1:source
so part of: sequence
organism: Epinephelus moara
organelle: mitochondrion
mol type: genomic DNA

300413
type: Taxonomy
SIO_000068: taxonomy

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 300413
product: tRNA-Phe
so part of: sequence
location: 1..69
location: region:1-69:1
so has part: feature:1-69:1:region

position:69:1
position: 69
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-69:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 300413
product: 12S ribosomal RNA
so part of: sequence
location: 70..1022
location: region:70-1022:1
so has part: feature:70-1022:1:region

position:70:1
position: 70
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1022:1
position: 1022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:70-1022:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 300413
product: tRNA-Val
so part of: sequence
location: 1023..1092
location: region:1023-1092:1
so has part: feature:1023-1092:1:region

position:1023:1
position: 1023
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1092:1
position: 1092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1023-1092:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 300413
product: 16S ribosomal RNA
so part of: sequence
location: 1093..2798
location: region:1093-2798:1
so has part: feature:1093-2798:1:region

position:1093:1
position: 1093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2798:1
position: 2798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1093-2798:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 300413
product: tRNA-Leu
codon recognized: UUR
so part of: sequence
location: 2799..2874
location: region:2799-2874:1
so has part: feature:2799-2874:1:region

position:2799:1
position: 2799
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2874:1
position: 2874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2799-2874:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 300413
gene: ND1
so part of: sequence
location: 2875..3849
location: region:2875-3849:1
so has part: feature:2875-3849:1:exon
subclass of: SO_0000010

12799094
type: Gene
SIO_000068: ncbigene

position:2875:1
position: 2875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3849:1
position: 3849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2875-3849:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 300413
gene: ND1
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MISTLFTHIINPLAYIIPVLLAVAFLTLMERKVLGYMQFRKGPNIVGPYGLLQPIADGVKLFTKEPVRPSTASPILFLLAPMLALTLALTLWAPLPMPYPILDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNAIIFTGGFTLQTFNTAQETVWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSATLFLGASHIPTTPELTAVNLMTKAALLSLLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLALPIAFAGLPPQI
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 2875..3849
location: region:2875-3849:1
so has part: feature:2875-3849:1:exon

YP_006303431.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2875-3849:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 300413
product: tRNA-Ile
so part of: sequence
location: 3854..3923
location: region:3854-3923:1
so has part: feature:3854-3923:1:region

position:3854:1
position: 3854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3923:1
position: 3923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3854-3923:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 300413
product: tRNA-Gln
so part of: sequence
location: complement(3923..3993)
location: region:3923-3993:-1
so has part: feature:3923-3993:-1:region

position:3923:-1
position: 3923
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3993:-1
position: 3993
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3923-3993:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 300413
product: tRNA-Met
so part of: sequence
location: 3994..4063
location: region:3994-4063:1
so has part: feature:3994-4063:1:region

position:3994:1
position: 3994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4063:1
position: 4063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3994-4063:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 300413
gene: ND2
so part of: sequence
location: 4064..5108
location: region:4064-5108:1
so has part: feature:4064-5108:1:exon
subclass of: SO_0000010

12799095
type: Gene
SIO_000068: ncbigene

position:4064:1
position: 4064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5108:1
position: 5108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4064-5108:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 300413
gene: ND2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:5108,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MNPYILATLLFSLGLGTTITLTSSHWLFAWMGLEINTLAILPLMAQQHHPRAVEATMKYFLTQATGAATLLFASTTNAWLTGQWDILQMSHPLAITMVILALSLKVGLAPLHTWLPEVLQGLDLTTGLILSTWQKLAPFALFLQIQPANPQILIMLGITSTLVGGWGGLNQTQLRKILAYSSTAHLGWMILILQFSPSLALLTLITYLIMTSSTFLVFKLNKSTSINMLATSWTKAPALTTLTPLILLSLGGLPPLTGFMPKWLILQELTKQELAPIATLTALTALLSLYFYLRLTYAMTLTMSPNNVTGTTPWRLPSLQLTLPLATLTTATICLLPLTPTMAALFNL
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 4064..5108
location: region:4064-5108:1
so has part: feature:4064-5108:1:exon

YP_006303432.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4064-5108:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 300413
product: tRNA-Trp
so part of: sequence
location: 5109..5179
location: region:5109-5179:1
so has part: feature:5109-5179:1:region

position:5109:1
position: 5109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5179:1
position: 5179
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5109-5179:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 300413
product: tRNA-Ala
so part of: sequence
location: complement(5181..5249)
location: region:5181-5249:-1
so has part: feature:5181-5249:-1:region

position:5181:-1
position: 5181
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5249:-1
position: 5249
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5181-5249:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 300413
product: tRNA-Asn
so part of: sequence
location: complement(5250..5322)
location: region:5250-5322:-1
so has part: feature:5250-5322:-1:region

position:5250:-1
position: 5250
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5322:-1
position: 5322
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5250-5322:-1:region

rep_origin
type: Replication Origin
subclass of: SO_0000296
RO_0002162: 300413
note: L-strand replication origin
so part of: sequence
location: complement(5323..5358)
location: region:5323-5358:-1
so has part: feature:5323-5358:-1:region

position:5323:-1
position: 5323
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5358:-1
position: 5358
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5323-5358:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 300413
product: tRNA-Cys
so part of: sequence
location: complement(5359..5425)
location: region:5359-5425:-1
so has part: feature:5359-5425:-1:region

position:5359:-1
position: 5359
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5425:-1
position: 5425
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5359-5425:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 300413
product: tRNA-Tyr
so part of: sequence
location: complement(5426..5496)
location: region:5426-5496:-1
so has part: feature:5426-5496:-1:region

position:5426:-1
position: 5426
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5496:-1
position: 5496
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5426-5496:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 300413
gene: COX1
so part of: sequence
location: 5498..7048
location: region:5498-7048:1
so has part: feature:5498-7048:1:exon
subclass of: SO_0000010

12799096
type: Gene
SIO_000068: ncbigene

position:5498:1
position: 5498
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7048:1
position: 7048
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5498-7048:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 300413
gene: COX1
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MAITRWFFSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIINMKPPAISQYQTPLFVWAVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVAYYSGKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGSIKWETPLLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIVAAFVHWFPLFTGYTLHSTWTKIHFGIMFVGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLWNTISSIGSMISLVAVIMFLFIIWEAFASKREVLAVELTTTNVEWLHGCPPPYHTFEEPAFVQIRPH
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 5498..7048
location: region:5498-7048:1
so has part: feature:5498-7048:1:exon

YP_006303433.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5498-7048:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 300413
product: tRNA-Ser
codon recognized: UCN
so part of: sequence
location: complement(7050..7120)
location: region:7050-7120:-1
so has part: feature:7050-7120:-1:region

position:7050:-1
position: 7050
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7120:-1
position: 7120
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7050-7120:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 300413
product: tRNA-Asp
so part of: sequence
location: 7124..7196
location: region:7124-7196:1
so has part: feature:7124-7196:1:region

position:7124:1
position: 7124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7196:1
position: 7196
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7124-7196:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 300413
gene: COX2
so part of: sequence
location: 7205..7895
location: region:7205-7895:1
so has part: feature:7205-7895:1:exon
subclass of: SO_0000010

12799097
type: Gene
SIO_000068: ncbigene

position:7205:1
position: 7205
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7895:1
position: 7895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7205-7895:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 300413
gene: COX2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:7895,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit II
translation: MAHPTQLGLQDAASPVMEELLHFHDHALMIVFLISTLVLYIIVAMVSTKLTNKYILDSQEIEIIWTILPAVVLILIALPSLRILYLMDEINDPHITIKAMGHQWYWSYEYTDYEDLGFDSYMIPTQDLTPGQFRLLEADHRMVVPLDSPVRVLVSAEDVLHSWAVPALGIKMDAVPGRLNQTAFVTSRPGVFYGQCSEICGANHSFMPIVVEVVPLEHFENWSSFMLQDA
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 7205..7895
location: region:7205-7895:1
so has part: feature:7205-7895:1:exon

YP_006303434.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7205-7895:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 300413
product: tRNA-Lys
so part of: sequence
location: 7896..7969
location: region:7896-7969:1
so has part: feature:7896-7969:1:region

position:7896:1
position: 7896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7969:1
position: 7969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7896-7969:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 300413
gene: ATP8
so part of: sequence
location: 7971..8138
location: region:7971-8138:1
so has part: feature:7971-8138:1:exon
subclass of: SO_0000010

12799098
type: Gene
SIO_000068: ncbigene

position:7971:1
position: 7971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8138:1
position: 8138
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7971-8138:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 300413
gene: ATP8
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLLPLPWFGTLLFAWVVFLIFFPKKVTAHTFPYDPTPLKPQKLEKTSWNWPWV
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 7971..8138
location: region:7971-8138:1
so has part: feature:7971-8138:1:exon

YP_006303435.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7971-8138:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 300413
gene: ATP6
so part of: sequence
location: <8129..8812
location: region:8129-8812:1
so has part: feature:8129-8812:1:exon
subclass of: SO_0000010

12799099
type: Gene
SIO_000068: ncbigene

position:8129:1
position: 8129
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:8812:1
position: 8812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8129-8812:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 300413
gene: ATP6
note: start codon not determined
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 6
translation: LSVSFFDQFMSTTYLGIPLIALALTFPSILYPTTSTRWLNNRLLTLQNAFINRFTHQLLLPLNVAGHKWATLLASLMLFLISLNMLGLLPYTFTPTAQLSLNLGFAVPLWLATVIIGMRNQPNHALGHLLPEGTPNLLIPMLIVIETISLFIRPLALGVRLTANLTAGHLLIQLISTAVFVLLPLMPTVAILTATVLVLLTLLEIAVAMIQAYVFVLLLTLYLQENI
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: <8129..8812
location: region:8129-8812:1
so has part: feature:8129-8812:1:exon

YP_006303436.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8129-8812:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 300413
gene: COX3
so part of: sequence
location: 8812..9596
location: region:8812-9596:1
so has part: feature:8812-9596:1:exon
subclass of: SO_0000010

12799100
type: Gene
SIO_000068: ncbigene

position:9596:1
position: 9596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8812-9596:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 300413
gene: COX3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9595..9596,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit III
translation: MAHQAHAYHMVDPSPWPLTGAIAALLMTSGLAIWFHFHSTTLIVLGTILLLLTMYQWWRDIVREGTFQGHHTPPVQKGLRYGMILFITSEVFFFLGFFWAFYHSSLAPTPELGGCWPPTGISTLDPFEVPLLNTAVLLASGVTVTWAHHSIMEGERKQAIQSLTLTILLGFYFTFLQAMEYYEAPFTIADGVYGSTFFVATGFHGLHVIVGSSFLAVCLLRQIQYHFTSEHHFGFEAAAWYWHFVDVVWLFLYISIYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 8812..9596
location: region:8812-9596:1
so has part: feature:8812-9596:1:exon

YP_006303437.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8812-9596:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 300413
product: tRNA-Gly
so part of: sequence
location: 9597..9668
location: region:9597-9668:1
so has part: feature:9597-9668:1:region

position:9597:1
position: 9597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9668:1
position: 9668
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9597-9668:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 300413
gene: ND3
so part of: sequence
location: 9669..10017
location: region:9669-10017:1
so has part: feature:9669-10017:1:exon
subclass of: SO_0000010

12799101
type: Gene
SIO_000068: ncbigene

position:9669:1
position: 9669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10017:1
position: 10017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9669-10017:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 300413
gene: ND3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:10017,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MNLVSTVISIALALSIALAILSFWLPLMNPDHEKLSPYECGFDPLGTARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQLTTPTLTFLWASIVLALLTLGLIYEWLQGGLDWAE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 9669..10017
location: region:9669-10017:1
so has part: feature:9669-10017:1:exon

YP_006303438.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9669-10017:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 300413
product: tRNA-Arg
so part of: sequence
location: 10018..10086
location: region:10018-10086:1
so has part: feature:10018-10086:1:region

position:10018:1
position: 10018
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10086:1
position: 10086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10018-10086:1:region

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 300413
gene: ND4L
so part of: sequence
location: 10087..10383
location: region:10087-10383:1
so has part: feature:10087-10383:1:exon
subclass of: SO_0000010

12799092
type: Gene
SIO_000068: ncbigene

position:10087:1
position: 10087
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10383:1
position: 10383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10087-10383:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 300413
gene: ND4L
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MTPVHFAFSSAFILGLTGLAFHRTHLLSALLCLEGMMLSLFIALSLWTVQLNSTSLCAAPMLLLAFSACEASAGLALLVATARTHGTDHLQNLNLLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 10087..10383
location: region:10087-10383:1
so has part: feature:10087-10383:1:exon

YP_006303439.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10087-10383:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 300413
gene: ND4
so part of: sequence
location: 10377..11757
location: region:10377-11757:1
so has part: feature:10377-11757:1:exon
subclass of: SO_0000010

12799089
type: Gene
SIO_000068: ncbigene

position:10377:1
position: 10377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11757:1
position: 11757
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10377-11757:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 300413
gene: ND4
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:11757,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKILIPTLMLIPTAWLTPAKWLWPTTLAHSMLIALISLSWLKHAMETGWSTLNLFMATDPLSTPLLVLTCWLLPLMILASQNHTATEPINRQRMYISLLTSLQIFLILAFGATEVIMFYIMFEATLIPTLILITRWGNQTERLNAGVYFLFYTLAGSLPLLVALLLLQNYTGTLSLFTLPFSHPLHLSSYTDKLWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPVAGSMVLAAVLLKLGGYGMMRMIVMLDPLTKDLSYPFLIFALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVVGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQIVLPLMTAWWFIASLANLALPPLPNLMGELMIIASLFNWSWWTIALTGGGTLITASYSLYMFLMTQRGPLPSHIIGLDPSHSREHLLMTLHLLPLLLLTLKPELIWGWAG
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 10377..11757
location: region:10377-11757:1
so has part: feature:10377-11757:1:exon

YP_006303440.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10377-11757:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 300413
product: tRNA-His
so part of: sequence
location: 11758..11827
location: region:11758-11827:1
so has part: feature:11758-11827:1:region

position:11758:1
position: 11758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11827:1
position: 11827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11758-11827:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 300413
product: tRNA-Ser
codon recognized: AGY
so part of: sequence
location: 11828..11899
location: region:11828-11899:1
so has part: feature:11828-11899:1:region

position:11828:1
position: 11828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11899:1
position: 11899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11828-11899:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 300413
product: tRNA-Leu
codon recognized: CUN
so part of: sequence
location: 11907..11979
location: region:11907-11979:1
so has part: feature:11907-11979:1:region

position:11907:1
position: 11907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11979:1
position: 11979
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11907-11979:1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 300413
gene: ND5
so part of: sequence
location: 11980..13818
location: region:11980-13818:1
so has part: feature:11980-13818:1:exon
subclass of: SO_0000010

12799090
type: Gene
SIO_000068: ncbigene

position:11980:1
position: 11980
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13818:1
position: 13818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11980-13818:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 300413
gene: ND5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MHPSSIMMTSSLIIIFSLLIFPVLTTLSPLPQKEAWALTHVKTAVKLAFFVSLLPLFLFLCQGAETVITSWNWMSTSTFDITISLKFDHYSIMFTPVALYVTWSILEFASWYMHADPNMNRFFKYLLIFLIAMIILVTANNLFQLFIGWEGVGIMSFLLIGWWHGRADANTAALQAVIYNRVGDIGLIFAMAWMVSHLNSWELQQIFATAKDFDLTYPLLGLIVAATGKSAQFGSHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLVRMSPLLENNPTALTTCLCLGALTTLFTATCALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGMHHLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEALNTSYLNAWALTLTLLATSFTAIYSLRIIFFVSMGRPRFNALSPINENNPAVINPLKRLAWGSIVAGLLITSNLLPLKTPVMSMPLMLKLTALTVTILGLLIALELASLTSKQFKPAPYLPTFRFSSMLGFFPMIMHRFPPAMSLGMGQSIASQMVDQTWLEKSGPKAAAKLNTPLITSTSNTQRGLVKTYLIFFLITLMFALLIFFI
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 11980..13818
location: region:11980-13818:1
so has part: feature:11980-13818:1:exon

YP_006303441.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11980-13818:1:exon

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 300413
gene: ND6
so part of: sequence
location: complement(13815..14336)
location: region:13815-14336:-1
so has part: feature:13815-14336:-1:exon
subclass of: SO_0000010

12799091
type: Gene
SIO_000068: ncbigene

position:13815:-1
position: 13815
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14336:-1
position: 14336
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13815-14336:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 300413
gene: ND6
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MCFAVICFLICWIVGAIAVASNPSPFFGALGLVMVAGVGCGVLVEYGSPFLALILFLIYLGGMLVVFAYSAALAAEPYPESWMNPAVVVYMCCYATAVMVAGSVYWHGWAGALSGSADEWGPFNIFRSDSGGVAVMYSEGGWMLVVGAGVLLLTLFVVLELTRGLSRGTLRAV
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(13815..14336)
location: region:13815-14336:-1
so has part: feature:13815-14336:-1:exon

YP_006303442.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13815-14336:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 300413
product: tRNA-Glu
so part of: sequence
location: complement(14337..14406)
location: region:14337-14406:-1
so has part: feature:14337-14406:-1:region

position:14337:-1
position: 14337
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14406:-1
position: 14406
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14337-14406:-1:region

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 300413
gene: CYTB
so part of: sequence
location: 14414..15554
location: region:14414-15554:1
so has part: feature:14414-15554:1:exon
subclass of: SO_0000010

12799093
type: Gene
SIO_000068: ncbigene

position:14414:1
position: 14414
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15554:1
position: 15554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14414-15554:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 300413
gene: CYTB
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:15554,aa:TERM)
transl table: 2
product: cytochrome b
translation: MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLIAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYAHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATVLHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAALLIALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPLLHTSKQRALTFRPLSQFLFWTLIADVIILTWIGGMPVEHPFIIIGQIASVLYFSLFLFLMPAAGWAENKILEWR
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 14414..15554
location: region:14414-15554:1
so has part: feature:14414-15554:1:exon

YP_006303443.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14414-15554:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 300413
product: tRNA-Thr
so part of: sequence
location: 15555..15628
location: region:15555-15628:1
so has part: feature:15555-15628:1:region

position:15555:1
position: 15555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15628:1
position: 15628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15555-15628:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 300413
product: tRNA-Pro
so part of: sequence
location: complement(15629..15698)
location: region:15629-15698:-1
so has part: feature:15629-15698:-1:region

position:15629:-1
position: 15629
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15698:-1
position: 15698
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15629-15698:-1:region

D-loop
type: Displacement Loop
subclass of: SO_0000297
RO_0002162: 300413
so part of: sequence
location: 15698..16696
location: region:15698-16696:1
so has part: feature:15698-16696:1:region

position:15698:1
position: 15698
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15698-16696:1:region