Enterobacter ludwigii strain EN-119 plasmid pEN-119, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
Submitted (19-SEP-2016) College of Life Science, Zhejiang Sci-Tech University, Xiasha Higher Education Zone, No. 928, 2nd Stree, Hangzhou, Zhejiang 310018, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP017280.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. HGAP3\nGenome Coverage :: 69x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 01:32:46\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,707\nCDSs (total) :: 4,585\nGenes (coding) :: 4,525\nCDSs (with protein) :: 4,525\nGenes (RNA) :: 122\nrRNAs :: 10, 9, 9 (5S, 16S, 23S)\ncomplete rRNAs :: 10, 9, 9 (5S, 16S, 23S)\ntRNAs :: 86\nncRNAs :: 8\nPseudo Genes (total) :: 60\nCDSs (without protein) :: 60\nPseudo Genes (ambiguous residues) :: 0 of 60\nPseudo Genes (frameshifted) :: 31 of 60\nPseudo Genes (incomplete) :: 34 of 60\nPseudo Genes (internal stop) :: 10 of 60\nPseudo Genes (multiple problems) :: 14 of 60\nPseudo Genes (short protein) :: 1 of 60\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:NP_312926.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005132073.1
part of the MetNIQ methionine uptake system; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
DL-methionine transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014168731.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0033232 - ABC-type D-methionine transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0048473 - D-methionine transport [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
methionine ABC transporter ATP-binding protein MetN
COORDINATES: similar to AA sequence:RefSeq:YP_005225247.1
GO:0016791 - phosphatase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase
COORDINATES: nucleotide motif:Rfam:14.4:RF00177
Derived by automated computational analysis using gene prediction method: cmsearch.
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: nucleotide motif:Rfam:14.4:RF02541
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
COORDINATES: similar to AA sequence:RefSeq:WP_017693775.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:YP_005224411.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:NP_462788.3
Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:NP_462790.1
YifB family Mg chelatase-like AAA ATPase
COORDINATES: similar to AA sequence:RefSeq:NP_312728.1
COORDINATES: similar to AA sequence:RefSeq:YP_002791259.1
COORDINATES: similar to AA sequence:RefSeq:WP_001012636.1
GO:0003984 - acetolactate synthase activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA]
acetolactate synthase 2 catalytic subunit
COORDINATES: similar to AA sequence:RefSeq:NP_312730.1
COORDINATES: similar to AA sequence:RefSeq:NP_312731.1
GO:0004084 - branched-chain-amino-acid transaminase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005133366.1
GO:0004160 - dihydroxy-acid dehydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_312733.1
GO:0004794 - L-threonine ammonia-lyase activity [Evidence IEA]
GO:0009097 - isoleucine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000365756.1
COORDINATES: similar to AA sequence:RefSeq:WP_005133363.1
GO:0004455 - ketol-acid reductoisomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:YP_005224421.1
COORDINATES: similar to AA sequence:RefSeq:WP_017383603.1
GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0006268 - DNA unwinding involved in DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020882895.1
GO:0008894 - guanosine-5'-triphosphate,3'-diphosphate diphosphatase activity [Evidence IEA]
GO:0015974 - guanosine pentaphosphate catabolic process [Evidence IEA]
guanosine-5'-triphosphate,3'-diphosphate diphosphatase
COORDINATES: similar to AA sequence:RefSeq:NP_418227.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0003724 - RNA helicase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017375425.1
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
GO:0006662 - glycerol ether metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017492510.1
GO:0008186 - ATP-dependent activity, acting on RNA [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]
GO:0006353 - DNA-templated transcription termination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_418231.1
GO:0016780 - phosphotransferase activity, for other substituted phosphate groups [Evidence IEA]
GO:0009246 - enterobacterial common antigen biosynthetic process [Evidence IEA]
UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_017693953.1
GO:0009246 - enterobacterial common antigen biosynthetic process [Evidence IEA]; GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
ECA polysaccharide chain length modulation protein
COORDINATES: similar to AA sequence:RefSeq:NP_462810.1
GO:0008761 - UDP-N-acetylglucosamine 2-epimerase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)
COORDINATES: similar to AA sequence:RefSeq:NP_312747.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0089714 - UDP-N-acetyl-D-mannosamine dehydrogenase activity [Evidence IEA]
UDP-N-acetyl-D-mannosamine dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_014172151.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_013099273.1
GO:0019180 - dTDP-4-amino-4,6-dideoxygalactose transaminase activity [Evidence IEA]
dTDP-4-amino-4,6-dideoxygalactose transaminase
COORDINATES: similar to AA sequence:RefSeq:YP_005224439.1
COORDINATES: similar to AA sequence:RefSeq:WP_006179226.1
GO:0008417 - fucosyltransferase activity [Evidence IEA]
GO:0036065 - fucosylation [Evidence IEA]
TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_006812384.1
COORDINATES: similar to AA sequence:RefSeq:NP_418242.1
GO:0016740 - transferase activity [Evidence IEA]
lipopolysaccharide N-acetylmannosaminouronosyltransferase
COORDINATES: similar to AA sequence:RefSeq:NP_462820.1
GO:0006865 - amino acid transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014172143.1
COORDINATES: similar to AA sequence:RefSeq:WP_013099267.1
GO:0005515 - protein binding [Evidence IEA]
GO:0042168 - heme metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016249441.1
uroporphyrinogen-III C-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:NP_462823.1
GO:0004852 - uroporphyrinogen-III synthase activity [Evidence IEA]
GO:0006780 - uroporphyrinogen III biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:YP_026260.1
GO:0004418 - hydroxymethylbilane synthase activity [Evidence IEA]
GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_312763.1
GO:0004016 - adenylate cyclase activity [Evidence IEA]
GO:0006171 - cAMP biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000999950.1
GO:0005506 - iron ion binding [Evidence IEA]
GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003860815.1
COORDINATES: similar to AA sequence:RefSeq:WP_005133314.1
GO:0008837 - diaminopimelate epimerase activity [Evidence IEA]
GO:0009089 - lysine biosynthetic process via diaminopimelate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_462833.1
COORDINATES: similar to AA sequence:RefSeq:NP_462834.1
GO:0009009 - site-specific recombinase activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_312769.1
5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB
COORDINATES: similar to AA sequence:RefSeq:NP_312770.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:YP_010051213.1
COORDINATES: similar to AA sequence:RefSeq:WP_000947142.1
GO:0015087 - cobalt ion transmembrane transporter activity [Evidence IEA]; GO:0015095 - magnesium ion transmembrane transporter activity [Evidence IEA]
GO:0006824 - cobalt ion transport [Evidence IEA]; GO:0015693 - magnesium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006816603.1
COORDINATES: similar to AA sequence:RefSeq:NP_312777.2
COORDINATES: similar to AA sequence:RefSeq:WP_003860803.1
GO:0004620 - phospholipase activity [Evidence IEA]
GO:0006629 - lipid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:YP_026263.3
COORDINATES: similar to AA sequence:RefSeq:YP_005224464.1
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:YP_005224466.1
homoserine/homoserine lactone efflux protein
COORDINATES: similar to AA sequence:RefSeq:WP_006812362.1
COORDINATES: similar to AA sequence:RefSeq:WP_010426280.1
sugar/pyridoxal phosphate phosphatase YigL
COORDINATES: similar to AA sequence:RefSeq:YP_005224469.1
carboxylate/amino acid/amine transporter
COORDINATES: similar to AA sequence:RefSeq:WP_013099245.1
COORDINATES: similar to AA sequence:RefSeq:WP_015585396.1
GO:0003871 - 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0008652 - amino acid biosynthetic process [Evidence IEA]; GO:0009086 - methionine biosynthetic process [Evidence IEA]
5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_008501527.1
COORDINATES: similar to AA sequence:RefSeq:NP_462853.1
GO:0016763 - pentosyltransferase activity [Evidence IEA]
GO:0009116 - nucleoside metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014833697.1
COORDINATES: similar to AA sequence:RefSeq:NP_312790.1
GO:0008168 - methyltransferase activity [Evidence IEA]
bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE
COORDINATES: similar to AA sequence:RefSeq:NP_462856.1
COORDINATES: similar to AA sequence:RefSeq:NP_462857.1
GO:0006744 - ubiquinone biosynthetic process [Evidence IEA]
ubiquinone biosynthesis regulatory protein kinase UbiB
COORDINATES: similar to AA sequence:RefSeq:NP_312793.1
Sec-independent protein translocase subunit TatA
COORDINATES: similar to AA sequence:RefSeq:WP_014833693.1
GO:0015628 - protein secretion by the type II secretion system [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]
Sec-independent protein translocase protein TatB
COORDINATES: similar to AA sequence:RefSeq:WP_015960915.1
Sec-independent protein translocase subunit TatC
COORDINATES: similar to AA sequence:RefSeq:WP_008501519.1
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_462862.1
transcription/translation regulatory transformer protein RfaH
COORDINATES: similar to AA sequence:RefSeq:WP_014072245.1
GO:0016831 - carboxy-lyase activity [Evidence IEA]
4-hydroxy-3-polyprenylbenzoate decarboxylase
COORDINATES: similar to AA sequence:RefSeq:YP_005224484.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_462867.1
GO:0003988 - acetyl-CoA C-acyltransferase activity [Evidence IEA]
GO:0009062 - fatty acid catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_462868.1
GO:0003857 - 3-hydroxyacyl-CoA dehydrogenase activity [Evidence IEA]; GO:0008692 - 3-hydroxybutyryl-CoA epimerase activity [Evidence IEA]; GO:0004165 - delta(3)-delta(2)-enoyl-CoA isomerase activity [Evidence IEA]; GO:0004300 - enoyl-CoA hydratase activity [Evidence IEA]
fatty acid oxidation complex subunit alpha FadB
COORDINATES: similar to AA sequence:RefSeq:WP_020801804.1
COORDINATES: similar to AA sequence:RefSeq:NP_462870.1
COORDINATES: similar to AA sequence:RefSeq:WP_004146450.1
COORDINATES: similar to AA sequence:RefSeq:WP_008501510.1
menaquinone-dependent protoporphyrinogen IX dehydrogenase