Pseudomonas paraeruginosa strain Cr1 plasmid pCR1, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.
Submitted (11-MAY-2018) Department of Zoology, University of Delhi, Gate No. 3 Chattra Marg, Delhi 110007, India
Submitted (01-APR-2017) Department of Zoology, University of Delhi, Gate No. 3 Chattra Marg, Delhi 110007, India
REFSEQ INFORMATION: The reference sequence is identical to\nCP020561.2.\n\nOn May 23, 2018 this sequence version replaced NZ_CP020561.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 2.2\nGenome Coverage :: 111.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/21/2022 02:59:14\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,759\nCDSs (total) :: 5,680\nGenes (coding) :: 5,498\nCDSs (with protein) :: 5,498\nGenes (RNA) :: 79\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 63\nncRNAs :: 4\nPseudo Genes (total) :: 182\nCDSs (without protein) :: 182\nPseudo Genes (ambiguous residues) :: 0 of 182\nPseudo Genes (frameshifted) :: 132 of 182\nPseudo Genes (incomplete) :: 74 of 182\nPseudo Genes (internal stop) :: 15 of 182\nPseudo Genes (multiple problems) :: 36 of 182\nCRISPR Arrays :: 4\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_005825601.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006710054.1
COORDINATES: similar to AA sequence:RefSeq:WP_019727115.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_004644386.1
COORDINATES: similar to AA sequence:RefSeq:WP_016715865.1
COORDINATES: protein motif:HMM:NF015301.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
PapB/FocB family fimbrial expression transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003149045.1
COORDINATES: protein motif:HMM:NF023168.2
COORDINATES: similar to AA sequence:RefSeq:WP_016359337.1
COORDINATES: similar to AA sequence:RefSeq:WP_003449746.1
COORDINATES: similar to AA sequence:RefSeq:WP_003142929.1
COORDINATES: similar to AA sequence:RefSeq:WP_003142931.1
COORDINATES: similar to AA sequence:RefSeq:WP_016068567.1
COORDINATES: similar to AA sequence:RefSeq:WP_016068568.1
COORDINATES: similar to AA sequence:RefSeq:WP_004351242.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012755126.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_003142939.1
COORDINATES: similar to AA sequence:RefSeq:WP_019690040.1
histone-like nucleoid-structuring protein, MvaT/MvaU family
COORDINATES: similar to AA sequence:RefSeq:WP_007247267.1
COORDINATES: similar to AA sequence:RefSeq:WP_016569388.1
COORDINATES: similar to AA sequence:RefSeq:WP_016359319.1
COORDINATES: similar to AA sequence:RefSeq:WP_003097562.1
COORDINATES: similar to AA sequence:RefSeq:WP_003142944.1
polyamine ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_005782487.1
COORDINATES: protein motif:HMM:NF014417.2
transcription termination/antitermination NusG family protein
COORDINATES: similar to AA sequence:RefSeq:WP_001133545.1
COORDINATES: similar to AA sequence:RefSeq:WP_003142945.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003142947.1
COORDINATES: similar to AA sequence:RefSeq:WP_003142949.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_003142951.1
VirB4 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_003142955.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016491.2
COORDINATES: protein motif:HMM:NF016238.2
COORDINATES: similar to AA sequence:RefSeq:WP_003142961.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: protein motif:HMM:NF015688.2
COORDINATES: similar to AA sequence:RefSeq:WP_003142964.1
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003230036.1
COORDINATES: similar to AA sequence:RefSeq:WP_003090369.1
COORDINATES: similar to AA sequence:RefSeq:WP_016359341.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF015831.2
COORDINATES: similar to AA sequence:RefSeq:WP_012541159.1
TrbM/KikA/MpfK family conjugal transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_003142893.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004580775.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003142897.1
COORDINATES: similar to AA sequence:RefSeq:WP_001773445.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_003230058.1
COORDINATES: protein motif:HMM:NF037421.2