Paenalcaligenes faecalis strain YLCF04 plasmid unnamed, complete sequence.
type: Entry
definition: Paenalcaligenes faecalis strain YLCF04 plasmid unnamed, complete sequence.
sequence version: NZ_CP106842.1
sequence date: 2023-01-04
sequence: sequence
division: CON
label: NZ_CP106842.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN30943086
keyword: RefSeq
source: Paenalcaligenes faecalis
organism: Paenalcaligenes faecalis
taxonomy: Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Paenalcaligenes.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP106842.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. v 1.5\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 517.75x\nSequencing Technology :: Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 01/03/2023 15:52:05\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,581\nCDSs (total) :: 2,522\nGenes (coding) :: 2,468\nCDSs (with protein) :: 2,468\nGenes (RNA) :: 59\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 43\nncRNAs :: 4\nPseudo Genes (total) :: 54\nCDSs (without protein) :: 54\nPseudo Genes (ambiguous residues) :: 0 of 54\nPseudo Genes (frameshifted) :: 8 of 54\nPseudo Genes (incomplete) :: 31 of 54\nPseudo Genes (internal stop) :: 20 of 54\nPseudo Genes (multiple problems) :: 5 of 54\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 14591
topology: circular
so has quality: SO_0000988
location: 1..14591
location: region:1-14591:1
RO_0002162: 2980099

NZ_CP106842
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN30943086
type: BioSample
SIO_000068: biosample

1
title: Paenalcaligenes faecalis sp. Nov.,a novel species of the family Alcaligenaceae isolated from chicken faeces
author: Zhang, Y.
journal: Unpublished

2
title: Direct Submission
author: Zhang, Y.
journal: Submitted (26-SEP-2022) College of Natural Resources and Environment, Northwest A&F University, Litai Street, Yangling, Shannxi 712100, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14591:1
position: 14591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14591:1:source
so part of: sequence
organism: Paenalcaligenes faecalis
mol type: genomic DNA
strain: YLCF04
isolation source: chicken faeces
plasmid: unnamed
country: China
collection date: 2020

2980099
type: Taxonomy
SIO_000068: taxonomy

N7U67_RS12815
type: Gene
subclass of: SO_0000704
RO_0002162: 2980099
locus tag: N7U67_RS12815
so part of: sequence
location: complement(512..817)
location: region:512-817:-1
so has part: feature:512-817:-1:exon
subclass of: SO_0000010

position:512:-1
position: 512
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:817:-1
position: 817
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:512-817:-1:exon

N7U67_RS12815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2980099
locus tag: N7U67_RS12815
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000015696.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
translation: MSGLISYSELQQSAPLPVAIDYPAALALRQMALIQGKLPKYLLAPEVSALHHYVPDLHRRMLLATLWNTYICINEALALTLSDFSLVPPYPFVQLATLKGV
SIO_010081: N7U67_RS12815
subclass of: SO_0000673
so part of: N7U67_RS12815
location: complement(512..817)
location: region:512-817:-1
so has part: feature:512-817:-1:exon

WP_009873361.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:512-817:-1:exon

N7U67_RS12820
type: Gene
subclass of: SO_0000704
RO_0002162: 2980099
locus tag: N7U67_RS12820
so part of: sequence
location: complement(1025..1363)
location: region:1025-1363:-1
so has part: feature:1025-1363:-1:exon
subclass of: SO_0000010

position:1025:-1
position: 1025
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1363:-1
position: 1363
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1025-1363:-1:exon

N7U67_RS12820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2980099
locus tag: N7U67_RS12820
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005291943.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MERVGMDCRRRPIPCLPPRVASRCMEPGHLDLNGSRRHLANGFTTPRIGANQFLRRTVNAQTNPWQNISIASAISSSRTRRISGSVGSWPRVRMIVLLSLRTRLGWRGCLTG
SIO_010081: N7U67_RS12820
subclass of: SO_0000673
so part of: N7U67_RS12820
location: complement(1025..1363)
location: region:1025-1363:-1
so has part: feature:1025-1363:-1:exon

WP_002310911.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1025-1363:-1:exon

N7U67_RS12825
type: Gene
subclass of: SO_0000704
RO_0002162: 2980099
gene: tet(C)
locus tag: N7U67_RS12825
so part of: sequence
location: complement(1267..2457)
location: region:1267-2457:-1
so has part: feature:1267-2457:-1:exon
subclass of: SO_0000010

position:1267:-1
position: 1267
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2457:-1
position: 2457
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1267-2457:-1:exon

N7U67_RS12825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2980099
gene: tet(C)
locus tag: N7U67_RS12825
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001297013.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tetracycline efflux MFS transporter Tet(C)
translation: MKSNNALIVILGTVTLDAVGIGLVMPVLPGLLRDIVHSDSIASHYGVLLALYALMQFLCAPVLGALSDRFGRRPVLLASLLGATIDYAIMATTPVLWILYAGRIVAGITGATGAVAGAYIADITDGEDRARHFGLMSACFGVGMVAGPVAGGLLGAISLHAPFLAAAVLNGLNLLLGCFLMQESHKGERRPMPLRAFNPVSSFRWARGMTIVAALMTVFFIMQLVGQVPAALWVIFGEDRFRWSATMIGLSLAVFGILHALAQAFVTGPATKRFGEKQAIIAGMAADALGYVLLAFATRGWMAFPIMILLASGGIGMPALQAMLSRQVDDDHQGQLQGSLAALTSLTSIIGPLIFTAIYAASASTWNGLAWIVGAALYLVCLPALRRGAWSRATST
SIO_010081: N7U67_RS12825
subclass of: SO_0000673
so part of: N7U67_RS12825
location: complement(1267..2457)
location: region:1267-2457:-1
so has part: feature:1267-2457:-1:exon

WP_000841446.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1267-2457:-1:exon

N7U67_RS12830
type: Gene
subclass of: SO_0000704
RO_0002162: 2980099
gene: tetR(C)
locus tag: N7U67_RS12830
so part of: sequence
location: 2550..3185
location: region:2550-3185:1
so has part: feature:2550-3185:1:exon
subclass of: SO_0000010

position:2550:1
position: 2550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3185:1
position: 3185
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2550-3185:1:exon

N7U67_RS12830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2980099
gene: tetR(C)
locus tag: N7U67_RS12830
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009873364.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tetracycline resistance transcriptional repressor TetR(C)
translation: MNKLQREAVIRTALELLNDVGMEGLTTRRLAERLGVQQPALYWHFKNKRALLDALAEAMLTINHTHSTPRDDDDWRSFLKGNACSFRRALLAYRDGARIHAGTRPAAPQMEKADAQLRFLCDAGFSAGDATYALMAISYFTVGAVLEQQASEADAEERGEDQLTTSASTMPARLQSAMKIVYEGGPDAAFERGLALIIGGLERSACAISLL
SIO_010081: N7U67_RS12830
subclass of: SO_0000673
so part of: N7U67_RS12830
location: 2550..3185
location: region:2550-3185:1
so has part: feature:2550-3185:1:exon

WP_009873364.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2550-3185:1:exon

N7U67_RS12835
type: Gene
subclass of: SO_0000704
RO_0002162: 2980099
gene: tnpA
locus tag: N7U67_RS12835
so part of: sequence
location: complement(3208..3663)
location: region:3208-3663:-1
so has part: feature:3208-3663:-1:exon
subclass of: SO_0000010

position:3208:-1
position: 3208
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3663:-1
position: 3663
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3208-3663:-1:exon

N7U67_RS12835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2980099
gene: tnpA
locus tag: N7U67_RS12835
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016659780.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS200/IS605 family transposase
translation: MYDWRTGRSCIFKNNVHLVFVTKYRRGVFTKEMLERTEAIMKETCEQMDCELLEFGGEDDHIHMMVSVHPKLAISNLVSKLKGKSSYMIRREYWDRVKTMLWGNHFWSPSYCVVSCGGVALDVVREYINNQNEPPSEKAMKTSQALKQRKE
SIO_010081: N7U67_RS12835
subclass of: SO_0000673
so part of: N7U67_RS12835
location: complement(3208..3663)
location: region:3208-3663:-1
so has part: feature:3208-3663:-1:exon

WP_009873365.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3208-3663:-1:exon

N7U67_RS12840
type: Gene
subclass of: SO_0000704
RO_0002162: 2980099
locus tag: N7U67_RS12840
so part of: sequence
location: complement(3783..4097)
location: region:3783-4097:-1
so has part: feature:3783-4097:-1:exon
subclass of: SO_0000010

position:3783:-1
position: 3783
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4097:-1
position: 4097
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3783-4097:-1:exon

N7U67_RS12840
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2980099
locus tag: N7U67_RS12840
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011493088.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MLPDRNHPDFPTALKRARNTMNLTLTELAKKAGISSTMPGRYENTKSSLFTAPSQETWRKLNNALFPSTISTNTIQNLLLEDASIDELVQQLKNKGVKSVSLDF
SIO_010081: N7U67_RS12840
subclass of: SO_0000673
so part of: N7U67_RS12840
location: complement(3783..4097)
location: region:3783-4097:-1
so has part: feature:3783-4097:-1:exon

WP_269902251.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3783-4097:-1:exon

N7U67_RS12845
type: Gene
subclass of: SO_0000704
RO_0002162: 2980099
locus tag: N7U67_RS12845
so part of: sequence
location: 4275..4496
location: region:4275-4496:1
so has part: feature:4275-4496:1:exon
subclass of: SO_0000010

position:4275:1
position: 4275
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4496:1
position: 4496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4275-4496:1:exon

N7U67_RS12845
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2980099
locus tag: N7U67_RS12845
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012187139.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: antitoxin MazE family protein
translation: MRPDTPNSTSRVQKHRAKLRKAGMKPVQIWVPDTTSKAFIAECERQSRLIAQSDDVMTHGLLDEALIEVDGWE
SIO_010081: N7U67_RS12845
subclass of: SO_0000673
so part of: N7U67_RS12845
location: 4275..4496
location: region:4275-4496:1
so has part: feature:4275-4496:1:exon

WP_269902252.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4275-4496:1:exon

N7U67_RS12850
type: Gene
subclass of: SO_0000704
RO_0002162: 2980099
locus tag: N7U67_RS12850
so part of: sequence
location: 4487..4822
location: region:4487-4822:1
so has part: feature:4487-4822:1:exon
subclass of: SO_0000010

position:4487:1
position: 4487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4822:1
position: 4822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4487-4822:1:exon

N7U67_RS12850
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2980099
locus tag: N7U67_RS12850
EC number: 3.1.-.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009454059.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system PemK/MazF family toxin
translation: MGIVRRGDIVSIATQGDFGKPRPALVIQSDLFSAHPSVSVLPITSFLIDAPLLRITLEPNEFNGLKKKSQVMIDKIITVVREKVGGQIGSLDFATMQEIDRCLAVFLGIVR
SIO_010081: N7U67_RS12850
subclass of: SO_0000673
so part of: N7U67_RS12850
location: 4487..4822
location: region:4487-4822:1
so has part: feature:4487-4822:1:exon

WP_269902253.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4487-4822:1:exon

N7U67_RS12855
type: Gene
subclass of: SO_0000704
RO_0002162: 2980099
locus tag: N7U67_RS12855
so part of: sequence
location: 5127..5693
location: region:5127-5693:1
so has part: feature:5127-5693:1:exon
subclass of: SO_0000010

position:5127:1
position: 5127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5693:1
position: 5693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5127-5693:1:exon

N7U67_RS12855
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2980099
locus tag: N7U67_RS12855
inference: COORDINATES: protein motif:HMM:NF023168.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA-binding protein
translation: MTSIDASIIERIEAAADKLYAEAEREQFPTVDTVRRAARVDMNAASIVMRNWRRKQTTRAEVTIEDVPESLQTVFVQTVGSVWRQAQELASEALTAAQAQWEVERNENDELRAELSSAFDELSVELEQMTAKYTMLNQEHNAIVLRVKDLETDRQALQEQLASAREQLAERTGELNAYKSQLSEKNRG
SIO_010081: N7U67_RS12855
subclass of: SO_0000673
so part of: N7U67_RS12855
location: 5127..5693
location: region:5127-5693:1
so has part: feature:5127-5693:1:exon

WP_269902254.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5127-5693:1:exon

N7U67_RS12860
type: Gene
subclass of: SO_0000704
RO_0002162: 2980099
locus tag: N7U67_RS12860
so part of: sequence
location: 5872..6159
location: region:5872-6159:1
so has part: feature:5872-6159:1:exon
subclass of: SO_0000010

position:5872:1
position: 5872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6159:1
position: 6159
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5872-6159:1:exon

N7U67_RS12860
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2980099
locus tag: N7U67_RS12860
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019674150.1
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelB/DinJ family antitoxin
translation: MTTTNFNVRLDKDLRDRAFPVFERYGLSASQAFKLFLTQVAETEQIPLSFDYAATVPNAKTAQAIRQGREDYQAGALTGYRPDEVSQALMDTARD
SIO_010081: N7U67_RS12860
subclass of: SO_0000673
so part of: N7U67_RS12860
location: 5872..6159
location: region:5872-6159:1
so has part: feature:5872-6159:1:exon

WP_269902255.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5872-6159:1:exon

N7U67_RS12865
type: Gene
subclass of: SO_0000704
RO_0002162: 2980099
locus tag: N7U67_RS12865
so part of: sequence
location: 6155..6421
location: region:6155-6421:1
so has part: feature:6155-6421:1:exon
subclass of: SO_0000010

position:6155:1
position: 6155
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6421:1
position: 6421
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6155-6421:1:exon

N7U67_RS12865
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2980099
locus tag: N7U67_RS12865
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004142231.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system YafQ family toxin
translation: MRTVYPTNQFKRDAKKQVLELITPSWAEVLHSLCHDLTLAAKYRDHALTGDWVGCRDCHVKPDLVLIYEYQNDDLILHRLGTHSELFG
SIO_010081: N7U67_RS12865
subclass of: SO_0000673
so part of: N7U67_RS12865
location: 6155..6421
location: region:6155-6421:1
so has part: feature:6155-6421:1:exon

WP_269902257.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6155-6421:1:exon

N7U67_RS12870
type: Gene
subclass of: SO_0000704
RO_0002162: 2980099
gene: repM
locus tag: N7U67_RS12870
so part of: sequence
location: complement(6756..7592)
location: region:6756-7592:-1
so has part: feature:6756-7592:-1:exon
subclass of: SO_0000010

position:6756:-1
position: 6756
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7592:-1
position: 7592
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6756-7592:-1:exon

N7U67_RS12870
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2980099
gene: repM
locus tag: N7U67_RS12870
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008317007.1
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein RepM
translation: MTSQNNNLVVKDNALINASYRLGFVEERLILLAIIEARESGKGITANDPLSIHAESYIRHFNVHRNGAYKALKAACDDLFARQFSYQSLNRKGNLVHHKARWVSEVAYIDNEATVKLVFSSAVIPFITRLEERFTRYELNQISELSSTYAIRLYELLIAWRSTGKTPVLELSDFRNKLGVESHEYQRMDHFKNKVLDFAVNQINEHTDITAKYEQHKSGRKITGFSFTFKQKNAAKTASNNLKREEITKDQAAKKARPGEDWNTLVKRLTRQYKITGL
SIO_010081: N7U67_RS12870
subclass of: SO_0000673
so part of: N7U67_RS12870
location: complement(6756..7592)
location: region:6756-7592:-1
so has part: feature:6756-7592:-1:exon

WP_269902256.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6756-7592:-1:exon

N7U67_RS12875
type: Gene
subclass of: SO_0000704
RO_0002162: 2980099
locus tag: N7U67_RS12875
so part of: sequence
location: complement(7935..8210)
location: region:7935-8210:-1
so has part: feature:7935-8210:-1:exon
subclass of: SO_0000010

position:7935:-1
position: 7935
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8210:-1
position: 8210
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7935-8210:-1:exon

N7U67_RS12875
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2980099
locus tag: N7U67_RS12875
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRFYDEVQKKVRFYAKKGGKKNRHMQSNRMLAFADFCEQEGVQSAQEVGKRHVIRYYKTLSELSDSTKLQHYYALRSLFELLEKDPCIPKP
SIO_010081: N7U67_RS12875
subclass of: SO_0000673
so part of: N7U67_RS12875
location: complement(7935..8210)
location: region:7935-8210:-1
so has part: feature:7935-8210:-1:exon

WP_269902245.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7935-8210:-1:exon

N7U67_RS12880
type: Gene
subclass of: SO_0000704
RO_0002162: 2980099
locus tag: N7U67_RS12880
so part of: sequence
location: complement(8210..9139)
location: region:8210-9139:-1
so has part: feature:8210-9139:-1:exon
subclass of: SO_0000010

position:9139:-1
position: 9139
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8210-9139:-1:exon

N7U67_RS12880
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2980099
locus tag: N7U67_RS12880
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014293672.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: integrase domain-containing protein
translation: MSRNFGIGTRDLASAGRLFLHQSVQQKALSFSSVDALSDRWAQFAAYAKEQGIGRMERITPELVQSYGRELAEKVQSKQISASYAQNLVSSVNTVMHFTPKQWESVSPTRECGIAERSLVRDTPVLTEREPLSVALQALRENGNYRGAAVAELAREFGLRSKEAALLNAHSALKEAQSKGFISVLNGTKGGRHREVPITSEKQLEVLKNASKAQEDARAVMPSDKNWAQYRNELQHVREVLKENGFAGLHDLRSAYAASRYEQLTGQSAPINNDGVIVDRAMDLTARDTITKELGHGRIDVVAAYIGGR
SIO_010081: N7U67_RS12880
subclass of: SO_0000673
so part of: N7U67_RS12880
location: complement(8210..9139)
location: region:8210-9139:-1
so has part: feature:8210-9139:-1:exon

WP_269902246.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8210-9139:-1:exon

N7U67_RS12885
type: Gene
subclass of: SO_0000704
RO_0002162: 2980099
locus tag: N7U67_RS12885
so part of: sequence
location: 10087..10257
location: region:10087-10257:1
so has part: feature:10087-10257:1:exon
subclass of: SO_0000010

position:10087:1
position: 10087
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10257:1
position: 10257
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10087-10257:1:exon

N7U67_RS12885
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2980099
locus tag: N7U67_RS12885
inference: COORDINATES: protein motif:HMM:NF020291.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLNYWAYDSVLEYRVSSNFKTWQQDVLATAEGFNTFPEPLQYNEVKNTANSVAKWV
SIO_010081: N7U67_RS12885
subclass of: SO_0000673
so part of: N7U67_RS12885
location: 10087..10257
location: region:10087-10257:1
so has part: feature:10087-10257:1:exon

WP_269902247.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10087-10257:1:exon

N7U67_RS12890
type: Gene
subclass of: SO_0000704
RO_0002162: 2980099
locus tag: N7U67_RS12890
so part of: sequence
location: complement(10490..10738)
location: region:10490-10738:-1
so has part: feature:10490-10738:-1:exon
subclass of: SO_0000010

position:10490:-1
position: 10490
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10738:-1
position: 10738
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10490-10738:-1:exon

N7U67_RS12890
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2980099
locus tag: N7U67_RS12890
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSEESNLQTDVLSSLMTSNQALQDAVLKIARIQQATTRATFEALNQEQKSTFCKSLESSGAKPKDIQQLTNRSQSTISRLLK
SIO_010081: N7U67_RS12890
subclass of: SO_0000673
so part of: N7U67_RS12890
location: complement(10490..10738)
location: region:10490-10738:-1
so has part: feature:10490-10738:-1:exon

WP_269902248.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10490-10738:-1:exon

N7U67_RS12895
type: Gene
subclass of: SO_0000704
RO_0002162: 2980099
locus tag: N7U67_RS12895
so part of: sequence
location: 10870..11223
location: region:10870-11223:1
so has part: feature:10870-11223:1:exon
subclass of: SO_0000010

position:10870:1
position: 10870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11223:1
position: 11223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10870-11223:1:exon

N7U67_RS12895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2980099
locus tag: N7U67_RS12895
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSNIFMLISAINPFLPFKSESDAQAFLNGYGLADQCAFISALYIGRDHLHSNGLNHDYVNANGTPIIPIDRYHATGMSCELIHQKNFARILYEKNTILSNYYASFLKCIPHQYLITF
SIO_010081: N7U67_RS12895
subclass of: SO_0000673
so part of: N7U67_RS12895
location: 10870..11223
location: region:10870-11223:1
so has part: feature:10870-11223:1:exon

WP_269902249.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10870-11223:1:exon

N7U67_RS12900
type: Gene
subclass of: SO_0000704
RO_0002162: 2980099
gene: repM
locus tag: N7U67_RS12900
pseudo: true
so part of: sequence
location: complement(<11957..12646)
location: region:11957-12646:-1
so has part: feature:11957-12646:-1:exon
subclass of: SO_0000010

position:11957:-1
position: 11957
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:12646:-1
position: 12646
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11957-12646:-1:exon

N7U67_RS12900
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2980099
gene: repM
locus tag: N7U67_RS12900
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004779686.1
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: replication initiation protein RepM
SIO_010081: N7U67_RS12900
subclass of: SO_0000673
so part of: N7U67_RS12900
location: complement(<11957..12646)
location: region:11957-12646:-1
so has part: feature:11957-12646:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11957-12646:-1:exon

N7U67_RS12905
type: Gene
subclass of: SO_0000704
RO_0002162: 2980099
locus tag: N7U67_RS12905
so part of: sequence
location: 13704..14417
location: region:13704-14417:1
so has part: feature:13704-14417:1:exon
subclass of: SO_0000010

position:13704:1
position: 13704
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14417:1
position: 14417
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13704-14417:1:exon

N7U67_RS12905
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2980099
locus tag: N7U67_RS12905
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009873360.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: OfxX fusion product
translation: MAEPLHAAAEKYEAVRPGHKVYGANLYLTAFDADGLPFDLVDHRGEPLSITIEAKSGELVKPALTAEGEAHRQKAKEEARRQAEEAEAEAQRRHRQTLDEYEQERQKRRKKEAEARKQFEDANAITAELLKTMPERFIDELNKTVQGVWDDLKPTETQGKKKGQPKALPVFSIHADGLVLSVETWKNPRRVLNPLCTLQHGEIAPFWMHEAWLEAMRRIVDLLDTLTAAPAEALESQ
SIO_010081: N7U67_RS12905
subclass of: SO_0000673
so part of: N7U67_RS12905
location: 13704..14417
location: region:13704-14417:1
so has part: feature:13704-14417:1:exon

WP_269902250.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13704-14417:1:exon