Paenalcaligenes faecalis strain YLCF04 plasmid unnamed, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Paenalcaligenes.
Paenalcaligenes faecalis sp. Nov.,a novel species of the family Alcaligenaceae isolated from chicken faeces
Submitted (26-SEP-2022) College of Natural Resources and Environment, Northwest A&F University, Litai Street, Yangling, Shannxi 712100, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP106842.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. v 1.5\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 517.75x\nSequencing Technology :: Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 01/03/2023 15:52:05\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,581\nCDSs (total) :: 2,522\nGenes (coding) :: 2,468\nCDSs (with protein) :: 2,468\nGenes (RNA) :: 59\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 43\nncRNAs :: 4\nPseudo Genes (total) :: 54\nCDSs (without protein) :: 54\nPseudo Genes (ambiguous residues) :: 0 of 54\nPseudo Genes (frameshifted) :: 8 of 54\nPseudo Genes (incomplete) :: 31 of 54\nPseudo Genes (internal stop) :: 20 of 54\nPseudo Genes (multiple problems) :: 5 of 54\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_000015696.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005291943.1
COORDINATES: similar to AA sequence:RefSeq:WP_001297013.1
tetracycline efflux MFS transporter Tet(C)
COORDINATES: similar to AA sequence:RefSeq:WP_009873364.1
tetracycline resistance transcriptional repressor TetR(C)
COORDINATES: similar to AA sequence:RefSeq:WP_016659780.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011493088.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012187139.1
COORDINATES: similar to AA sequence:RefSeq:WP_009454059.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: protein motif:HMM:NF023168.2
COORDINATES: similar to AA sequence:RefSeq:WP_019674150.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_004142231.1
type II toxin-antitoxin system YafQ family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_008317007.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014293672.1
COORDINATES: protein motif:HMM:NF020291.2
COORDINATES: similar to AA sequence:RefSeq:WP_004779686.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009873360.1