Vitis vinifera mitochondrion, complete genome.
mitochondrion Vitis vinifera (wine grape)
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
Mitochondrial DNA of Vitis vinifera and the issue of rampant horizontal gene transfer
Submitted (26-FEB-2009) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (04-JUL-2008) Goremykin V., Research centre, Edmund Mach Foundation, IASMA Research Center, Via E. Mach 1, 38010 San Michele all'Adige (TN), ITALY
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence was derived from FM179380.\nCOMPLETENESS: full length.
horizontally transferred from chloroplast DNA
microinversion similar to chloroplast 67863-67881
ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
similar to orf105c in Beta, orf144 in Nicotiana; contains Type II intron maturase conserved domain. Group II introns use intron-encoded reverse transcriptase, maturase and DNA endonuclease activities for site-specific insertion into DNA; pfam01348
nad7 intron orf; similar to orf125f in Nicotiana, orf115a in Brassica
similar to orf6 in Brassica napus mtDNA, to DNA-directed RNA polymerase in Daucus carota mtDNA (ACCESSION AAS15052), to DNA-directed RNA polymerase in Beta vulgaris mtDNA (ACCESSION CAA71809)
similar to orf159b in Nicotiana, orf168 in Marchantia orf187 in Physcomitrella
similar to orf103a in Nicotiana, orf105-c in Zea
horizontally transferred from chloroplast DNA; psbA CDS goes beyond the region of similarity with cpDNA of Vitis
Sec-independent protein translocase protein TatC
similar to orf135 in Brassica; contains RT_LTR conserved domain. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. Reverse transcriptases (RTs) from retrotransposons and retroviruses which have long terminal repeats (LTRs) in their DNA copies but not in their RNA template. RT catalyzes DNA replication from an RNA template, and is responsible for the replication of retroelements.
similar to orf100b in Brassica, URF-1 in Citrullus lanatus
mitochondrial type; transfer RNA-fMet(CAU)
similar to orf147 in Nicotiana tabacum, orf122b and orf129b in Beta vulgaris, orf140-b in maize, orf101b in Brassica napus