Vitis vinifera mitochondrion, complete genome.
type: Entry
definition: Vitis vinifera mitochondrion, complete genome.
sequence version: NC_012119.1
sequence date: 2023-04-03
sequence: sequence
division: PLN
label: NC_012119.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Vitis vinifera (wine grape)
organism: Vitis vinifera
taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
reference: 1
references: 18922764
reference: 2
reference: 3
comment: PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence was derived from FM179380.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 773279
topology: circular
so has quality: SO_0000988
location: 1..773279
location: region:1-773279:1
RO_0002162: 29760

NC_012119
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: Mitochondrial DNA of Vitis vinifera and the issue of rampant horizontal gene transfer
author: Goremykin, V.V.
author: Salamini, F.
author: Velasco, R.
author: Viola, R.
journal: Mol. Biol. Evol.
volume: 26
issue: 1
pages: 99-110
year: 2009
pubmed: 18922764

18922764
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (26-FEB-2009) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Goremykin, V.
journal: Submitted (04-JUL-2008) Goremykin V., Research centre, Edmund Mach Foundation, IASMA Research Center, Via E. Mach 1, 38010 San Michele all'Adige (TN), ITALY

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:773279:1
position: 773279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-773279:1:source
so part of: sequence
organism: Vitis vinifera
organelle: mitochondrion
mol type: genomic DNA
cultivar: Pinot noir clone ENTAV115

29760
type: Taxonomy
SIO_000068: taxonomy

ViviM_p038
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: nad5
locus tag: ViviM_p038
trans splicing: true
so part of: sequence
location: complement(join(316023..317745,773104..773279,189517..191811))
location: region:189517-773279:-1
so has part: feature:189517-191811:-1:exon
so has part: feature:773104-773279:-1:exon
so has part: feature:316023-317745:-1:exon
subclass of: SO_0000010

7498671
type: Gene
SIO_000068: ncbigene

position:189517:-1
position: 189517
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:773279:-1
position: 773279
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:189517-191811:-1:exon

position:191811:-1
position: 191811
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:773104-773279:-1:exon

position:773104:-1
position: 773104
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:316023-317745:-1:exon

position:316023:-1
position: 316023
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:317745:-1
position: 317745
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ViviM_p038
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: nad5
locus tag: ViviM_p038
trans splicing: true
codon start: 1
product: NADH dehydrogenase subunit 5
translation: MYLLIVFLPLLGSSVAGFFGRFLGSEGSAIMTTTCVSFSSILSFIAFYEVAPGASACYLRIAPWISSEMFDASWGFLFDSPTVVMLIVVTSISSLVHLYSISYMSEDPHSPRFMCYLSIPTFFMPMLVTGDNSLQLFLGWEGVGLASYLLIHFWFTRLQADKAATKAMPVNRVGDFGLAPGISGRFTLFQTVDSSTIFARASAPRNSWISCNMRLNAITLICILLLIGAAGKSAQIGSHTWSPDAMEGPTPVSASIHAATMVTAGVFMIARCSPLFEYPPMALIVITSAGATTSFLAATTGILQNDLKRVIAYSTCSQLGYMIFACGISNYSVSVFHLMNHAFFKALLFLSAGSVIHAMSDEQDMRKMGGLASSFPFTYAMMLMGSLSLIGFPFPTGFYSKDVILELAYTKYTISGNFAFWLGSVSVLFTSYYSFRSLFLTFLVPTNSFGRDILRCHDAPIPMAIPLILLALGSLFVGYLAKDMMIGLGTHFWANSPFVLPKNEILAESEFAAPTITKLIPIPFSTSGASVAYNVNPVADQFQRAFQTSTFCNRLYSFFNKRWFFDQVFNDFLVRSFLRFGYEVSFEALDKGAIEILGPYGISYTFRRLAERISQLQSGFVYHYAFAMLLGSTLFVTFYRMWDSLSSWVDNRSSFIFLVSSFYNNKSSQE
SIO_010081: ViviM_p038
subclass of: SO_0000673
so part of: ViviM_p038
location: complement(join(316023..316172,317351..317745,773104..773125,189517..190732,191582..191811))
location: region:189517-773125:-1
so has part: feature:191582-191811:-1:exon
so has part: feature:189517-190732:-1:exon
so has part: feature:773104-773125:-1:exon
so has part: feature:317351-317745:-1:exon
so has part: feature:316023-316172:-1:exon

YP_002608337.1
type: Protein
SIO_000068: ncbiprotein

position:773125:-1
position: 773125
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:191582-191811:-1:exon

position:191582:-1
position: 191582
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:189517-190732:-1:exon

position:190732:-1
position: 190732
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:773104-773125:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:317351-317745:-1:exon

position:317351:-1
position: 317351
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:316023-316172:-1:exon

position:316172:-1
position: 316172
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ViviM_p001
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: nad6
locus tag: ViviM_p001
note: NADH dehydrogenase subunit 6
pseudo: true
so part of: sequence
location: 19954..20223
location: region:19954-20223:1
so has part: feature:19954-20223:1:exon

7498761
type: Gene
SIO_000068: ncbigene

position:19954:1
position: 19954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20223:1
position: 20223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19954-20223:1:exon

ViviM_p002
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: nad1
locus tag: ViviM_p002
trans splicing: true
so part of: sequence
location: join(610468..610858,452523..454250,complement(21504..25520))
location: region:21504-610858:1
so has part: feature:610468-610858:1:exon
so has part: feature:452523-454250:1:exon
so has part: feature:21504-25520:-1:exon
subclass of: SO_0000010

7498511
type: Gene
SIO_000068: ncbigene

position:21504:1
position: 21504
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:610858:-1
position: 610858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:610468-610858:1:exon

position:610468:1
position: 610468
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:610858:1
position: 610858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:452523-454250:1:exon

position:452523:1
position: 452523
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:454250:1
position: 454250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:21504-25520:-1:exon

position:21504:-1
position: 21504
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25520:-1
position: 25520
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ViviM_p002
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: nad1
locus tag: ViviM_p002
trans splicing: true
codon start: 1
product: NADH dehydrogenase subunit 1
translation: MSIAVAVPAEILGIILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGSKLILKEPISPSSANFSLFRMAPVATFMLSLVARAVVPFDYGMVLSDPNIGLLYLFAISSLGVYGIITAGRSSNSKYAFLGALRSAAQMVPYEVSIGLILITVLICVGPRNSSEIVMAQKQIWSGIPLFPVLVMFLISRLAETNRAPFDLPEAEAESVAGYNVEYSSMGSALFFLGEYANMILMSGPCTLLSPGGWPPILDLPISKKIPGSIRFSIKVILFPFLYIWVRAAFPRYRYDQLMGLGRKVFLPLSLARVVPVSGLLVTFQWLP
SIO_010081: ViviM_p002
subclass of: SO_0000673
so part of: ViviM_p002
location: join(610468..610858,452523..452605,454059..454250,complement(25462..25520),complement(21504..21762))
location: region:21504-610858:1
so has part: feature:610468-610858:1:exon
so has part: feature:452523-452605:1:exon
so has part: feature:454059-454250:1:exon
so has part: feature:25462-25520:-1:exon
so has part: feature:21504-21762:-1:exon

YP_002608338.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:610468-610858:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:452523-452605:1:exon

position:452605:1
position: 452605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:454059-454250:1:exon

position:454059:1
position: 454059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:25462-25520:-1:exon

position:25462:-1
position: 25462
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:21504-21762:-1:exon

position:21762:-1
position: 21762
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ViviM_p003
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: matR
locus tag: ViviM_p003
so part of: sequence
location: complement(22834..24039)
location: region:22834-24039:-1
so has part: feature:22834-24039:-1:exon
subclass of: SO_0000010

7498544
type: Gene
SIO_000068: ncbigene

position:22834:-1
position: 22834
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24039:-1
position: 24039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22834-24039:-1:exon

ViviM_p003
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: matR
locus tag: ViviM_p003
codon start: 1
product: maturase
translation: MRDLIKYCKRMGLLIELGGEAILVIRSERGLARKLAPLKTHYLRICYARYADDSLLGIVGAVELLIEIQKRIAHFLQSGLNLWVGSAGSTTIAARSTVEFPGTVIREVPPRTTPIQFLRELEKRIRVKHRIHITACHLRSAIHSKFRNLGNSIPIKQLTKGMSGTGSLLDAVQLAETLGKAGVISPQVSVLWGTVKHIRQGSRGISLLHSSGRSNVPSDVQQAVSRSGMSVRKLPLYTPAGRKAAGEGGGHWAGSISSEFPIQIEAPIKKILRRLRDRGIISRRRPWPIHVACLTNVSDGDIVNWSAGIAISPLSYYRCRDNLYQVRTIVDHQIRWSAIFTPAHKQKSSARNIIPKYSKDSNIVNQEGGKTLAELPNSIELGKLGPGQDPNNKEHSTTSLV
SIO_010081: ViviM_p003
subclass of: SO_0000673
so part of: ViviM_p003
location: complement(22834..24039)
location: region:22834-24039:-1
so has part: feature:22834-24039:-1:exon

YP_002608339.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22834-24039:-1:exon

ViviM_p004
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: petB
locus tag: ViviM_p004
note: cytochrome b6
pseudo: true
so part of: sequence
location: 28843..29490
location: region:28843-29490:1
so has part: feature:28843-29490:1:exon

7498758
type: Gene
SIO_000068: ncbigene

position:28843:1
position: 28843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29490:1
position: 29490
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28843-29490:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 29760
note: horizontally transferred from chloroplast DNA
so part of: sequence
location: 28850..30790
location: region:28850-30790:1
so has part: feature:28850-30790:1:region

position:28850:1
position: 28850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30790:1
position: 30790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28850-30790:1:region

ViviM_p005
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: petD
locus tag: ViviM_p005
note: cytochrome b6 f complex subunit IV
pseudo: true
so part of: sequence
location: 29681..30803
location: region:29681-30803:1
so has part: feature:29681-30803:1:exon

7498772
type: Gene
SIO_000068: ncbigene

position:29681:1
position: 29681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30803:1
position: 30803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29681-30803:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 29760
note: horizontally transferred from chloroplast DNA
so part of: sequence
location: 36915..46020
location: region:36915-46020:1
so has part: feature:36915-46020:1:region

position:36915:1
position: 36915
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:46020:1
position: 46020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36915-46020:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 29760
note: microinversion similar to chloroplast 67863-67881
so part of: sequence
location: 37009..37027
location: region:37009-37027:1
so has part: feature:37009-37027:1:region

position:37009:1
position: 37009
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37027:1
position: 37027
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:37009-37027:1:region

ViviM_p006
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: petA
locus tag: ViviM_p006
so part of: sequence
location: complement(37324..38286)
location: region:37324-38286:-1
so has part: feature:37324-38286:-1:exon
subclass of: SO_0000010

7498572
type: Gene
SIO_000068: ncbigene

position:37324:-1
position: 37324
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:38286:-1
position: 38286
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:37324-38286:-1:exon

ViviM_p006
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: petA
locus tag: ViviM_p006
note: chloroplast
codon start: 1
product: cytochrome f
translation: MQTRNTFSWIKEQITRSISVSLMIYIITRTSISNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPFDMQLKQVLANGKRGALNVGAVLILPEGFELAPPDRISPEMKEKIGNLSFQNYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATAAGIVSKIIRKEKGGYEITIADASDGRQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRIQGLLFFLSSVILAQIFLVLKKKQFEKVQLSEMNF
SIO_010081: ViviM_p006
subclass of: SO_0000673
so part of: ViviM_p006
location: complement(37324..38286)
location: region:37324-38286:-1
so has part: feature:37324-38286:-1:exon

YP_002608340.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:37324-38286:-1:exon

ViviM_p007
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: cemA
locus tag: ViviM_p007
note: heme-binding protein
pseudo: true
so part of: sequence
location: complement(38514..39203)
location: region:38514-39203:-1
so has part: feature:38514-39203:-1:exon

7498771
type: Gene
SIO_000068: ncbigene

position:38514:-1
position: 38514
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:39203:-1
position: 39203
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38514-39203:-1:exon

ViviM_p008
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: ycf4
locus tag: ViviM_p008
so part of: sequence
location: complement(40063..40614)
location: region:40063-40614:-1
so has part: feature:40063-40614:-1:exon
subclass of: SO_0000010

7498535
type: Gene
SIO_000068: ncbigene

position:40063:-1
position: 40063
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:40614:-1
position: 40614
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40063-40614:-1:exon

ViviM_p008
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: ycf4
locus tag: ViviM_p008
note: chloroplast
codon start: 1
product: ycf4
translation: MSWRSERIWIELITGSRKTSNFCWAFILFLGSLGFLLVGTSSYLGRNLISLFPSQQIIFFPQGIVMSFYGIAGLFISSYLWCTISWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRLLMKDIQSIRIAVKEDIYALVLYMEIRGQGAIPLTRTDENLTPREMEQKAAELAYFLRVPIEVF
SIO_010081: ViviM_p008
subclass of: SO_0000673
so part of: ViviM_p008
location: complement(40063..40614)
location: region:40063-40614:-1
so has part: feature:40063-40614:-1:exon

YP_002608341.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:40063-40614:-1:exon

ViviM_p009
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: accD
locus tag: ViviM_p009
note: acetyl-CoA carboxylase beta subunit
pseudo: true
so part of: sequence
location: complement(41154..42675)
location: region:41154-42675:-1
so has part: feature:41154-42675:-1:exon

7498742
type: Gene
SIO_000068: ncbigene

position:41154:-1
position: 41154
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:42675:-1
position: 42675
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41154-42675:-1:exon

ViviM_p010
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: rbcL
locus tag: ViviM_p010
so part of: sequence
location: complement(43291..44718)
location: region:43291-44718:-1
so has part: feature:43291-44718:-1:exon
subclass of: SO_0000010

7498516
type: Gene
SIO_000068: ncbigene

position:43291:-1
position: 43291
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:44718:-1
position: 44718
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43291-44718:-1:exon

ViviM_p010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: rbcL
locus tag: ViviM_p010
note: chloroplast
codon start: 1
product: ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
translation: MSPQTETKASVGFIAGVKDYKLTYYTPEYETKPTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHIEPVAGEENQYIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMIKRAVFARELGVPIIMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRLSGGDHIHAGTVVGKLEGEREITLGFVDLLRDDFVEKDRSRGIYFTQDWVSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNEIIRAASKWSPELAAACEVWKEIQFEFPAMDTL
SIO_010081: ViviM_p010
subclass of: SO_0000673
so part of: ViviM_p010
location: complement(43291..44718)
location: region:43291-44718:-1
so has part: feature:43291-44718:-1:exon

YP_002608342.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:43291-44718:-1:exon

ViviM_p011
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: atpB
locus tag: ViviM_p011
note: ATPase beta subunit
pseudo: true
so part of: sequence
location: 45498..46020
location: region:45498-46020:1
so has part: feature:45498-46020:1:exon

7498701
type: Gene
SIO_000068: ncbigene

position:45498:1
position: 45498
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:45498-46020:1:exon

ViviM_t001
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: tRNA-Gln (UUG)
locus tag: ViviM_t001
so part of: sequence
location: complement(46187..46258)
location: region:46187-46258:-1
so has part: feature:46187-46258:-1:exon
subclass of: SO_0000663

7498750
type: Gene
SIO_000068: ncbigene

position:46187:-1
position: 46187
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:46258:-1
position: 46258
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:46187-46258:-1:exon

ViviM_t001
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 29760
gene: tRNA-Gln (UUG)
locus tag: ViviM_t001
product: tRNA-Gln
note: mitochondrial type
codon recognized: CAA
SIO_010081: ViviM_t001
subclass of: SO_0000673
so part of: ViviM_t001
location: complement(46187..46258)
location: region:46187-46258:-1
so has part: feature:46187-46258:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:46187-46258:-1:exon

ViviM_p012
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: orf106
locus tag: ViviM_p012
so part of: sequence
location: 47849..48166
location: region:47849-48166:1
so has part: feature:47849-48166:1:exon
subclass of: SO_0000010

7498645
type: Gene
SIO_000068: ncbigene

position:47849:1
position: 47849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:48166:1
position: 48166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:47849-48166:1:exon

ViviM_p012
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: orf106
locus tag: ViviM_p012
note: similar to orf105c in Beta, orf144 in Nicotiana; contains Type II intron maturase conserved domain. Group II introns use intron-encoded reverse transcriptase, maturase and DNA endonuclease activities for site-specific insertion into DNA; pfam01348
codon start: 1
product: orf106
translation: MRFLTRERFCDMDAQPNSVGRLAHLTDDEIFDRFDRILKSLSHYSEQWSFRSRCYRLPRSGSRSNLHLYALVGFRLNLIAYLSGANKRESFRMGSSSDAEPMREG
SIO_010081: ViviM_p012
subclass of: SO_0000673
so part of: ViviM_p012
location: 47849..48166
location: region:47849-48166:1
so has part: feature:47849-48166:1:exon

YP_002608343.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:47849-48166:1:exon

ViviM_t002
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: tRNA-Gly (GCC)
locus tag: ViviM_t002
so part of: sequence
location: complement(51025..51096)
location: region:51025-51096:-1
so has part: feature:51025-51096:-1:exon
subclass of: SO_0000663

7498767
type: Gene
SIO_000068: ncbigene

position:51025:-1
position: 51025
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:51096:-1
position: 51096
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:51025-51096:-1:exon

ViviM_t002
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 29760
gene: tRNA-Gly (GCC)
locus tag: ViviM_t002
product: tRNA-Gly
note: mitochondrial type
codon recognized: GGC
SIO_010081: ViviM_t002
subclass of: SO_0000673
so part of: ViviM_t002
location: complement(51025..51096)
location: region:51025-51096:-1
so has part: feature:51025-51096:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:51025-51096:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 29760
note: horizontally transferred from chloroplast DNA
so part of: sequence
location: 65057..67534
location: region:65057-67534:1
so has part: feature:65057-67534:1:region

position:65057:1
position: 65057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:67534:1
position: 67534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:65057-67534:1:region

ViviM_p013
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: psbJ
locus tag: ViviM_p013
so part of: sequence
location: complement(65079..65201)
location: region:65079-65201:-1
so has part: feature:65079-65201:-1:exon
subclass of: SO_0000010

7498648
type: Gene
SIO_000068: ncbigene

position:65079:-1
position: 65079
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:65201:-1
position: 65201
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:65079-65201:-1:exon

ViviM_p013
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: psbJ
locus tag: ViviM_p013
note: chloroplast
codon start: 1
product: PSII reaction center subunit X
translation: MADTTGRIPLWLIGTVTGIPVIGSIGLFFYGSYSGLGSSL
SIO_010081: ViviM_p013
subclass of: SO_0000673
so part of: ViviM_p013
location: complement(65079..65201)
location: region:65079-65201:-1
so has part: feature:65079-65201:-1:exon

YP_002608344.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:65079-65201:-1:exon

ViviM_p014
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: psbL
locus tag: ViviM_p014
note: PSII reaction center subunit XII
pseudo: true
so part of: sequence
location: complement(65332..65457)
location: region:65332-65457:-1
so has part: feature:65332-65457:-1:exon

7498785
type: Gene
SIO_000068: ncbigene

position:65332:-1
position: 65332
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:65457:-1
position: 65457
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:65332-65457:-1:exon

ViviM_p015
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: psbF
locus tag: ViviM_p015
note: PSII reaction center subunit VI
pseudo: true
so part of: sequence
location: complement(65480..65599)
location: region:65480-65599:-1
so has part: feature:65480-65599:-1:exon

7498743
type: Gene
SIO_000068: ncbigene

position:65480:-1
position: 65480
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:65599:-1
position: 65599
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:65480-65599:-1:exon

ViviM_p016
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: psbE
locus tag: ViviM_p016
note: PSII reaction center subunit V
pseudo: true
so part of: sequence
location: complement(65615..65890)
location: region:65615-65890:-1
so has part: feature:65615-65890:-1:exon

7498783
type: Gene
SIO_000068: ncbigene

position:65615:-1
position: 65615
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:65890:-1
position: 65890
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:65615-65890:-1:exon

ViviM_p017
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: petL
locus tag: ViviM_p017
so part of: sequence
location: 67132..67326
location: region:67132-67326:1
so has part: feature:67132-67326:1:exon
subclass of: SO_0000010

7498588
type: Gene
SIO_000068: ncbigene

position:67132:1
position: 67132
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:67326:1
position: 67326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:67132-67326:1:exon

ViviM_p017
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: petL
locus tag: ViviM_p017
note: chloroplast
codon start: 1
product: cyt b6 f complex subunit VI
translation: MLTITSYFGFLLAASTITPALFIGLSKIRLIRNSLNEQFIKINVSVRFQVWNTAFPRQLPILGH
SIO_010081: ViviM_p017
subclass of: SO_0000673
so part of: ViviM_p017
location: 67132..67326
location: region:67132-67326:1
so has part: feature:67132-67326:1:exon

YP_002608345.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:67132-67326:1:exon

ViviM_p018
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: petG
locus tag: ViviM_p018
so part of: sequence
location: 67400..67513
location: region:67400-67513:1
so has part: feature:67400-67513:1:exon
subclass of: SO_0000010

7498576
type: Gene
SIO_000068: ncbigene

position:67400:1
position: 67400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:67513:1
position: 67513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:67400-67513:1:exon

ViviM_p018
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: petG
locus tag: ViviM_p018
note: chloroplast
codon start: 1
product: cyt b6 f complex subunit V
translation: MIEVFLFGIVLGLIPITLAGFFVTAYLQDKGGDQLDL
SIO_010081: ViviM_p018
subclass of: SO_0000673
so part of: ViviM_p018
location: 67400..67513
location: region:67400-67513:1
so has part: feature:67400-67513:1:exon

YP_002608346.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:67400-67513:1:exon

ViviM_t003
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: tRNA-Asp (GUC)
locus tag: ViviM_t003
so part of: sequence
location: complement(68587..68649)
location: region:68587-68649:-1
so has part: feature:68587-68649:-1:exon
subclass of: SO_0000663

7498775
type: Gene
SIO_000068: ncbigene

position:68587:-1
position: 68587
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:68649:-1
position: 68649
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:68587-68649:-1:exon

ViviM_t003
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 29760
gene: tRNA-Asp (GUC)
locus tag: ViviM_t003
product: tRNA-Asp
note: mitochondrial type
codon recognized: GAC
SIO_010081: ViviM_t003
subclass of: SO_0000673
so part of: ViviM_t003
location: complement(68587..68649)
location: region:68587-68649:-1
so has part: feature:68587-68649:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:68587-68649:-1:exon

ViviM_p019
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: ccmFN
locus tag: ViviM_p019
so part of: sequence
location: complement(69813..71537)
location: region:69813-71537:-1
so has part: feature:69813-71537:-1:exon
subclass of: SO_0000010

7498641
type: Gene
SIO_000068: ncbigene

position:69813:-1
position: 69813
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:71537:-1
position: 71537
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:69813-71537:-1:exon

ViviM_p019
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: ccmFN
locus tag: ViviM_p019
codon start: 1
product: CcmFN
translation: MSIYELFHYSLFPCLFVAFTYNTKQPPAFGAAPAFWCILLSFLGLSFRHIDNNLSNYNVLTANAPFFYQITGTWSNHEGSIFSWCRIPSFYGFLLCYRCRPQSHNVSKRGGHRETLFYSFVSNFVKNSILSLPRYEQKSGAAPQLYTPFVLRTLVDSELRSRRNRTFDGPALFYATLYPERKMSFAPLGARRSRGSREGKRTHPLLHLARDDKERASSIDEQRIDGALGIALFFSPFLSASSDPFVRNFFVCTEPLAESNPVPQDPISAIHPPCIYAGDVASAMGFGLCRSKIWNGIVAFHSPPMRKDAAEKNGTLLRSAGCVGSRITSELFTLKFKHVDAKCYPALLLRRNISLLMQLRRRFFAFSSLWTGALVDTGREQAKRVVRNGKKDTTTSPLCWTAGANTVVSDQDQEPILIWILTCRWFLTVGILPGSWWAHHELGRGGWWFRDPVENASFMPRVLATARIHSVIRPPLYSWTSLLNIVTLPCCVSGTSYIRSGLLAPVHSFATDDTRGIFLWRFFLLMTGISLILLFQMKLQASGRITYKKEMVVVRRHLRHSARAQPRPVMLWKN
SIO_010081: ViviM_p019
subclass of: SO_0000673
so part of: ViviM_p019
location: complement(69813..71537)
location: region:69813-71537:-1
so has part: feature:69813-71537:-1:exon

YP_002608347.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:69813-71537:-1:exon

ViviM_p020
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: nad7
locus tag: ViviM_p020
so part of: sequence
location: complement(72436..79220)
location: region:72436-79220:-1
so has part: feature:72436-79220:-1:exon
subclass of: SO_0000010

7498533
type: Gene
SIO_000068: ncbigene

position:72436:-1
position: 72436
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:79220:-1
position: 79220
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:72436-79220:-1:exon

ViviM_p020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: nad7
locus tag: ViviM_p020
codon start: 1
product: NADH dehydrogenase subunit 7
translation: MTTRNGQITNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGSLHRGTEKLIEYKTYLQALPYSDRSDYVSTMAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAMDVGASTPSLWASEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCRDIDSSTQQFASRIDELEEMSTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGPGVCWDSRRAAPYDVHDQSDPDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPPSRCRMKLSMESSIHHFEPYTEGFSVPAPSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR
SIO_010081: ViviM_p020
subclass of: SO_0000673
so part of: ViviM_p020
location: complement(join(72436..72697,74525..74768,75812..76278,78123..78191,79078..79220))
location: region:72436-79220:-1
so has part: feature:79078-79220:-1:exon
so has part: feature:78123-78191:-1:exon
so has part: feature:75812-76278:-1:exon
so has part: feature:74525-74768:-1:exon
so has part: feature:72436-72697:-1:exon

YP_002608348.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:79078-79220:-1:exon

position:79078:-1
position: 79078
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:78123-78191:-1:exon

position:78123:-1
position: 78123
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:78191:-1
position: 78191
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:75812-76278:-1:exon

position:75812:-1
position: 75812
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:76278:-1
position: 76278
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:74525-74768:-1:exon

position:74525:-1
position: 74525
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:74768:-1
position: 74768
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:72436-72697:-1:exon

position:72697:-1
position: 72697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ViviM_p021
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: orf185
locus tag: ViviM_p021
so part of: sequence
location: 77586..78140
location: region:77586-78140:1
so has part: feature:77586-78140:1:exon
subclass of: SO_0000010

7498553
type: Gene
SIO_000068: ncbigene

position:77586:1
position: 77586
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:78140:1
position: 78140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:77586-78140:1:exon

ViviM_p021
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: orf185
locus tag: ViviM_p021
note: nad7 intron orf; similar to orf125f in Nicotiana, orf115a in Brassica
codon start: 1
product: orf185
translation: MRTSFPSAHSPFTRFSKQRGKGGQQVPRALCPTHLSRSKCSSPVPPNAPISRQRSCECAVMLRMLRHRIDRPSSRSFPVHSLYISDTQGRTRWEGSSPSLCPADHSAGISHSRPRLTAARGCSCRYVSLSGSLAPPVISFYDMLLSSPYSICHLVISASLRVSTSERNGGLHSVTPRSPSERSE
SIO_010081: ViviM_p021
subclass of: SO_0000673
so part of: ViviM_p021
location: 77586..78140
location: region:77586-78140:1
so has part: feature:77586-78140:1:exon

YP_002608349.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:77586-78140:1:exon

ViviM_p022
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: ndhB
locus tag: ViviM_p022
note: NADH dehydrogenase subunit 2
pseudo: true
so part of: sequence
location: 105310..105529
location: region:105310-105529:1
so has part: feature:105310-105529:1:exon

7498769
type: Gene
SIO_000068: ncbigene

position:105310:1
position: 105310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:105529:1
position: 105529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:105310-105529:1:exon

ViviM_p022
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 29760
gene: ndhB
locus tag: ViviM_p022
note: horizontally transferred from chloroplast DNA
pseudo: true
SIO_010081: ViviM_p022
subclass of: SO_0000673
so part of: ViviM_p022
location: 105310..105529
location: region:105310-105529:1
so has part: feature:105310-105529:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:105310-105529:1:exon

ViviM_p023
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: nad4
locus tag: ViviM_p023
pseudo: true
so part of: sequence
location: 106852..106918
location: region:106852-106918:1
so has part: feature:106852-106918:1:exon

7498763
type: Gene
SIO_000068: ncbigene

position:106852:1
position: 106852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:106918:1
position: 106918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:106852-106918:1:exon

ViviM_p024
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: nad2
locus tag: ViviM_p024
trans splicing: true
so part of: sequence
location: join(107141..108909,540667..544789)
location: region:107141-544789:1
so has part: feature:107141-108909:1:exon
so has part: feature:540667-544789:1:exon
subclass of: SO_0000010

7498551
type: Gene
SIO_000068: ncbigene

position:107141:1
position: 107141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:544789:1
position: 544789
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:107141-108909:1:exon

position:108909:1
position: 108909
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:540667-544789:1:exon

position:540667:1
position: 540667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ViviM_p024
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: nad2
locus tag: ViviM_p024
trans splicing: true
codon start: 1
product: NADH dehydrogenase subunit 2
translation: MFNLFLAVSPEIFIINATSILLIHGVVFSTSKKYDYPPLVSNVGWLGLLSVLITLLLLAAGAPLLTIAHLFRNNLFRRDNFTYFCQILLLLSTAGTISMCFDSSEQERFDASESIVLIPLPTRSMLFMISAHDSIAMYLAIEPQSLCFYVIAASKRKSEFSTEAGSKYLILGAFPSGIFLFGCSMIYGSTGATHFDQLAKILTGYEITGARSSGLFMGILSIAVGFLFKITAVPFHMWAPDIYEGSPTPVTAFLSIAPKISISANISRVSIYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRPLAHSSIGHVGYIRTGLSCGTIEGIQSLLIGIFIYASMTIDAFAIVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIGRFYYIRFAKRMFFDTPRTWILYEPMDRDKSLLLAMTSSFITSSFLYPSPLFSVTHQMALSSYL
SIO_010081: ViviM_p024
subclass of: SO_0000673
so part of: ViviM_p024
location: join(107141..107293,108518..108909,540667..540827,542533..543105,544602..544789)
location: region:107141-544789:1
so has part: feature:107141-107293:1:exon
so has part: feature:108518-108909:1:exon
so has part: feature:540667-540827:1:exon
so has part: feature:542533-543105:1:exon
so has part: feature:544602-544789:1:exon

YP_002608350.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:107141-107293:1:exon

position:107293:1
position: 107293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:108518-108909:1:exon

position:108518:1
position: 108518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:540667-540827:1:exon

position:540827:1
position: 540827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:542533-543105:1:exon

position:542533:1
position: 542533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:543105:1
position: 543105
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:544602-544789:1:exon

position:544602:1
position: 544602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ViviM_p025
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: rps3
locus tag: ViviM_p025
note: ribosomal protein S3; exon 2
pseudo: true
so part of: sequence
location: 109856..110045
location: region:109856-110045:1
so has part: feature:109856-110045:1:exon

7498760
type: Gene
SIO_000068: ncbigene

position:109856:1
position: 109856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:110045:1
position: 110045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:109856-110045:1:exon

ViviM_p026
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: ccmFC
locus tag: ViviM_p026
so part of: sequence
location: 121066..123538
location: region:121066-123538:1
so has part: feature:121066-123538:1:exon
subclass of: SO_0000010

7498626
type: Gene
SIO_000068: ncbigene

position:121066:1
position: 121066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:123538:1
position: 123538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:121066-123538:1:exon

ViviM_p026
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: ccmFC
locus tag: ViviM_p026
codon start: 1
product: cytochrome c biogenesis FC
translation: MVQLHNSFFFITSMFVPRGTASPALWKWFVSREIPTGAPSSNGTIIPIPIPSFPLLVYLHSRKFIRFIDRAKSGVLVRASHPIILLSDIIRISSSETIARRASFRFVPVLHFLLLESKGDISYLESFCGVLRLLFFRTLLSLPRDRSAKRERARRRKGQALRPNGNEQRRNDKMRCPGHPHLERRVEGFGPVAFPVPPSSGGACVGGVPPEIGLEALALPTSRQLRAVGDDYYQKAPMKMNISHGGVCICMLGVLLSKTKKIQFTQRLPLGSELHMGKERCCLRGIDHLHGPTSHSICGNFMIYKRSLTTDRLMFEHDESLRADLLPIKNFPASYENGKLKHFLHRWMKNRIKKNFWFTMFPEKRYFRETTSTTEVAIHTNPLTDLYAPIGTGNSRTSGWYTTIMKLPFIFFIRIGFMMASSGGSRSLLRQLQKDKLRWNRESSVEFIIAINARSQSSGCDASRHFFDGPRPPGLPARSEEFMGRQAGETEWAGTTNQAKPSSRR
SIO_010081: ViviM_p026
subclass of: SO_0000673
so part of: ViviM_p026
location: join(121066..121835,122791..123538)
location: region:121066-123538:1
so has part: feature:121066-121835:1:exon
so has part: feature:122791-123538:1:exon

YP_002608351.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:121066-121835:1:exon

position:121835:1
position: 121835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:122791-123538:1:exon

position:122791:1
position: 122791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ViviM_p027
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: RNA_pol
locus tag: ViviM_p027
so part of: sequence
location: complement(130992..133919)
location: region:130992-133919:-1
so has part: feature:130992-133919:-1:exon
subclass of: SO_0000010

7498531
type: Gene
SIO_000068: ncbigene

position:130992:-1
position: 130992
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:133919:-1
position: 133919
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:130992-133919:-1:exon

ViviM_p027
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: RNA_pol
locus tag: ViviM_p027
note: similar to orf6 in Brassica napus mtDNA, to DNA-directed RNA polymerase in Daucus carota mtDNA (ACCESSION AAS15052), to DNA-directed RNA polymerase in Beta vulgaris mtDNA (ACCESSION CAA71809)
codon start: 1
product: DNA-dependent RNA polymerase
translation: MKSLLFNRKYQSRYTKVAIVNHICPSQVSIVNHIYPSVVVSIVNHICPSVYGHRCYSTKDTILEKFWESFYSQLLDDSNTNSRSESNVSQYHKYVIDLLNNSKKDKDSFTEEELISIQTSIEDATFKYDDIKNIYQLTPDLIKIIISKDELTAKEYLKKCKLTKNDLLTLEYFDQYTLEAIIIYVFGVLFNCIQELPAVRVSTLIEHLDTYVRSQAKLLKGYTSEERPSTKHEINSDDTSSNVKAEENEMANDKMQNNYAFGAFLVEFLVNRKWISLSNELSFHEQYSVTMKNGKYYIPRQLYAICNFDISLLPIKLNLPMICKPLDWKPIRDDIIPSSLSDMRGGYLSIPSGDFYQQKRYRVMTTRDLSHFHIKFDEGKYDDLCLTMNKLQAQSFEIHKDVLSFIMNNNELLVKYGLLMPRFLASLNINRAVELLRNSYLSNNDLTQVCNYQDLLKVFLERIQRARYETFVINIASAYEGYKIYLPAFVDFRGRIYRAGVLHFHERDLARSLVLFTCNNPSGELINHNIDDKEIMFIASAAAAFHYKKFESYKDSYQWYLDHVSMKASSAESIIELALSAADPYQFISKVLCIESNNKSNLIQIPITQDASASAYQIMSYFLLDNDLALKTNLIPYIDYHYSPEYDFSDNKKIKDIYTILLEELKVYFRKELTNNLADIVCPRLTRKLVKVLFMPMIYGKTVISIANDFNQHFDSLLDKGECMQLAKKIYIFYKTYYPGIVNLMDLIRNISWLVSAMDRPVLYSVSLFTTVQDYMKSKTVNIWVYDRIHRKRRQVTLRIPSGDRDRRKTHMSTFANFIHQKDAFIAMHMIKYMVSENAPVYTVHDNFITTAPYASYISRYYVLVLYNMGSPLLWINQFIDLNLAIDRNSYTLESPIPNHILLNSLESIIPKNLNKSKKLIWAKKIYSVCIAYEKYIMDLYDNNPKTVDLENKRVAFIGNMLNWDNCKYKYCLHL
SIO_010081: ViviM_p027
subclass of: SO_0000673
so part of: ViviM_p027
location: complement(130992..133919)
location: region:130992-133919:-1
so has part: feature:130992-133919:-1:exon

YP_002608352.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:130992-133919:-1:exon

ViviM_p028
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: orf159
locus tag: ViviM_p028
so part of: sequence
location: complement(155822..156298)
location: region:155822-156298:-1
so has part: feature:155822-156298:-1:exon
subclass of: SO_0000010

7498597
type: Gene
SIO_000068: ncbigene

position:155822:-1
position: 155822
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:156298:-1
position: 156298
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:155822-156298:-1:exon

ViviM_p028
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: orf159
locus tag: ViviM_p028
note: similar to orf159b in Nicotiana, orf168 in Marchantia orf187 in Physcomitrella
codon start: 1
product: orf159
translation: MPFGRSLLQRESLLRVSGEEGSPEILISFHSSGSTSNQWRKLKNPWFPGRTPFRPSCCGTGKKKRFFAQLAHSAGPTCISYLAEEASDRLEFLRSWDSMDQDLLSLYGQYRSTLVDHMDVEKAFHFDELETSLFHFDLPSLYLCFVCSREELQSRDTT
SIO_010081: ViviM_p028
subclass of: SO_0000673
so part of: ViviM_p028
location: complement(155822..156298)
location: region:155822-156298:-1
so has part: feature:155822-156298:-1:exon

YP_002608353.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:155822-156298:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 29760
note: horizontally transferred from chloroplast DNA
so part of: sequence
location: 162304..168304
location: region:162304-168304:1
so has part: feature:162304-168304:1:region

position:162304:1
position: 162304
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:168304:1
position: 168304
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:162304-168304:1:region

ViviM_p029
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: psaB
locus tag: ViviM_p029
note: PSI P700 apoprotein A2
pseudo: true
so part of: sequence
location: complement(162304..164446)
location: region:162304-164446:-1
so has part: feature:162304-164446:-1:exon

7498768
type: Gene
SIO_000068: ncbigene

position:162304:-1
position: 162304
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:164446:-1
position: 164446
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:162304-164446:-1:exon

ViviM_p030
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: psaA
locus tag: ViviM_p030
note: PSI P700 apoprotein A1
pseudo: true
so part of: sequence
location: complement(164472..166729)
location: region:164472-166729:-1
so has part: feature:164472-166729:-1:exon

7498778
type: Gene
SIO_000068: ncbigene

position:164472:-1
position: 164472
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:166729:-1
position: 166729
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:164472-166729:-1:exon

ViviM_p031
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: ycf3
locus tag: ViviM_p031
pseudo: true
so part of: sequence
location: complement(167462..167614)
location: region:167462-167614:-1
so has part: feature:167462-167614:-1:exon

7498777
type: Gene
SIO_000068: ncbigene

position:167462:-1
position: 167462
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:167614:-1
position: 167614
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:167462-167614:-1:exon

ViviM_p032
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: sdh3
locus tag: ViviM_p032
so part of: sequence
location: 173935..174441
location: region:173935-174441:1
so has part: feature:173935-174441:1:exon
subclass of: SO_0000010

7498669
type: Gene
SIO_000068: ncbigene

position:173935:1
position: 173935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:174441:1
position: 174441
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:173935-174441:1:exon

ViviM_p032
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: sdh3
locus tag: ViviM_p032
codon start: 1
product: succinate dehydrogenase subunit 3
translation: MKLKVTDNQQLDNKEIIKVFNNIKISFNETIKNEEKKEFLITLSDFVCNDLIRRGNLINNRKNILRPLSPHLPIYKPQLTSTFPIYHRISGAFLATLVLFFYLLCLKIGLICFTYENFYQFFFFSSKLILISVGITALALSYHLYNGVRHLLTDFSGFLFQCFRIGRS
SIO_010081: ViviM_p032
subclass of: SO_0000673
so part of: ViviM_p032
location: 173935..174441
location: region:173935-174441:1
so has part: feature:173935-174441:1:exon

YP_002608354.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:173935-174441:1:exon

ViviM_p033
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: rpl5
locus tag: ViviM_p033
so part of: sequence
location: 175173..175724
location: region:175173-175724:1
so has part: feature:175173-175724:1:exon
subclass of: SO_0000010

7498633
type: Gene
SIO_000068: ncbigene

position:175173:1
position: 175173
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:175724:1
position: 175724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:175173-175724:1:exon

ViviM_p033
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: rpl5
locus tag: ViviM_p033
codon start: 1
product: ribosomal protein L5
translation: MFPLHFHYEDVSRQDPLLKPNHANVMEVPGSCEIRVIPKRPSSFIIQNGKLAMEIPRGQRFIQTQRGSTGKSFRSNQFLGSNKDKGYVSDLARQSTLRGHGMSNFSVRISIVMSLLDSPVEIRENSIQFSMETEFCEFSPELEDHFEIFEHIRGFNVTIVTSANTQDETLPPWSGFFQKDEGQ
SIO_010081: ViviM_p033
subclass of: SO_0000673
so part of: ViviM_p033
location: 175173..175724
location: region:175173-175724:1
so has part: feature:175173-175724:1:exon

YP_002608355.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:175173-175724:1:exon

ViviM_p034
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: rps14
locus tag: ViviM_p034
so part of: sequence
location: 175672..176028
location: region:175672-176028:1
so has part: feature:175672-176028:1:exon
subclass of: SO_0000010

7498609
type: Gene
SIO_000068: ncbigene

position:175672:1
position: 175672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:176028:1
position: 176028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:175672-176028:1:exon

ViviM_p034
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: rps14
locus tag: ViviM_p034
codon start: 1
product: ribosomal protein S14
translation: MRLYHRGAAFFKKMRVSKMSEKLNIRDHKRRLLAAKYELRRKLYKAFCKDPDLPSDMRDKHRYKLSKLPRNSSFARVRNRCISTGRPRSVYEFFRISRIVFRGLASRGPLMGIKKSSW
SIO_010081: ViviM_p034
subclass of: SO_0000673
so part of: ViviM_p034
location: 175672..176028
location: region:175672-176028:1
so has part: feature:175672-176028:1:exon

YP_002608356.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:175672-176028:1:exon

ViviM_p035
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: cob2
locus tag: ViviM_p035
so part of: sequence
location: 177407..178588
location: region:177407-178588:1
so has part: feature:177407-178588:1:exon
subclass of: SO_0000010

7498619
type: Gene
SIO_000068: ncbigene

position:177407:1
position: 177407
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:178588:1
position: 178588
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:177407-178588:1:exon

ViviM_p035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: cob2
locus tag: ViviM_p035
codon start: 1
product: apocytochrome b
translation: MTIRNQRFSLLKQPISSTLNQHLIDYPTPSNLSYWWGFGSLAGICLVIQIVTGVFLAMHHTPHVDLAFNSVEHVMRDVEGGWLLRYMHANGASMFLIVVHLHIFRGLYHASYSSPREFVRCLGVVIFLLMIVTAFTGYVPPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHLLPLILVGASLLHLAALHQYGSNNPLGVHSEMDKISFYPYFYVKDLVGRVASAIFSSIWIFYAPNVLGHPDNYIPANPMPTPPHIVPEWYFLPIHAILRSIPDKSGGVAAIAPVFICLLALPFFKSMYVRSSSFRPIHQGIFWLLLADRLLLGWIGCQPVEAPFVTIGQIPPFVFFLFFAITPIPGRVGRGIPNSYTDETDHT
SIO_010081: ViviM_p035
subclass of: SO_0000673
so part of: ViviM_p035
location: 177407..178588
location: region:177407-178588:1
so has part: feature:177407-178588:1:exon

YP_002608357.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:177407-178588:1:exon

ViviM_p036
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: cox1
locus tag: ViviM_p036
so part of: sequence
location: 178777..180360
location: region:178777-180360:1
so has part: feature:178777-180360:1:exon
subclass of: SO_0000010

7498537
type: Gene
SIO_000068: ncbigene

position:178777:1
position: 178777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:180360:1
position: 180360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:178777-180360:1:exon

ViviM_p036
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: cox1
locus tag: ViviM_p036
codon start: 1
transl except: (pos:178777..178779,aa:Met)
product: cytochrome c oxidase subunit 1
translation: MTNPVRWLFSTNHKDIGTLYFILGAIAGVMGTCFSVLIRMELARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGGSGNWSVPILIGAPDMAFPRLNNISFWLLPPSLLLLLSPALVEVGSGTGWTVYPPLSGITSHSGGAVDSAISSLHLSGVSSILGSINFITTISNMRGPGMTMHRSPLFVWSVPVTAFPLLLSLPVLAGAITMLLTDRNFNTTFSDPAGGGDPILYQHLFRFFGHPEVYIPILPGSGIISHIVSTFSGKPVFGYLGMVYAMISTGVLGSLVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKIFSWIATMWGGSIQYKTPMLFAVGSIFLFTIGGLTGIVTANSGLDIVLHDTYYAVAHFHYVLSMGAVFALFAGFHYWVGKIFGRTYPETLGQIHFWITSFGVNPTLFPMHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTITSSSGNNKRCAPSPWAVEQNPTTLEWMVQSPPAYHTFGELPAIKETKSYVK
SIO_010081: ViviM_p036
subclass of: SO_0000673
so part of: ViviM_p036
location: 178777..180360
location: region:178777-180360:1
so has part: feature:178777-180360:1:exon

YP_002608358.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:178777-180360:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 29760
note: horizontally transferred from chloroplast DNA
so part of: sequence
location: 181810..181937
location: region:181810-181937:1
so has part: feature:181810-181937:1:region

position:181810:1
position: 181810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:181937:1
position: 181937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:181810-181937:1:region

ViviM_p037
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: atpE
locus tag: ViviM_p037
note: ATPase epsilon
pseudo: true
so part of: sequence
location: 188354..188425
location: region:188354-188425:1
so has part: feature:188354-188425:1:exon

7498757
type: Gene
SIO_000068: ncbigene

position:188354:1
position: 188354
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:188425:1
position: 188425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:188354-188425:1:exon

ViviM_p037
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 29760
gene: atpE
locus tag: ViviM_p037
note: horizontally transferred from chloroplast DNA
pseudo: true
SIO_010081: ViviM_p037
subclass of: SO_0000673
so part of: ViviM_p037
location: 188354..188425
location: region:188354-188425:1
so has part: feature:188354-188425:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:188354-188425:1:exon

ViviM_p039
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: orf104
locus tag: ViviM_p039
so part of: sequence
location: 191305..191616
location: region:191305-191616:1
so has part: feature:191305-191616:1:exon
subclass of: SO_0000010

7498526
type: Gene
SIO_000068: ncbigene

position:191305:1
position: 191305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:191616:1
position: 191616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:191305-191616:1:exon

ViviM_p039
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: orf104
locus tag: ViviM_p039
note: similar to orf103a in Nicotiana, orf105-c in Zea
codon start: 1
product: orf104
translation: MRGAVLALPDQDRSHTCSVRDRPPQLCIDRKAGRHSPQPREWLRPVCPPLFPTCYGAPGWIGAGRVRIAAEQQPRPDLIYLLGNSSGDFTVAKEAPRSIKHFR
SIO_010081: ViviM_p039
subclass of: SO_0000673
so part of: ViviM_p039
location: 191305..191616
location: region:191305-191616:1
so has part: feature:191305-191616:1:exon

YP_002608359.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:191305-191616:1:exon

ViviM_p040
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: rps7
locus tag: ViviM_p040
so part of: sequence
location: complement(192149..192595)
location: region:192149-192595:-1
so has part: feature:192149-192595:-1:exon
subclass of: SO_0000010

7498563
type: Gene
SIO_000068: ncbigene

position:192149:-1
position: 192149
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:192595:-1
position: 192595
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:192149-192595:-1:exon

ViviM_p040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: rps7
locus tag: ViviM_p040
codon start: 1
product: ribosomal protein S7
translation: MGGLDGEQKQLIKKLVNFRMKEGKRTRVRTIFYQTFHRPARTERDVIKLMVDAVDKIKPICEVEKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYRKRGIARKKRDNLHGLASTNRSFAHFRWW
SIO_010081: ViviM_p040
subclass of: SO_0000673
so part of: ViviM_p040
location: complement(192149..192595)
location: region:192149-192595:-1
so has part: feature:192149-192595:-1:exon

YP_002608360.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:192149-192595:-1:exon

ViviM_p041
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: ccmFc
locus tag: ViviM_p041
note: cytochrome c maturation protein; exon 1
pseudo: true
so part of: sequence
location: complement(198682..198747)
location: region:198682-198747:-1
so has part: feature:198682-198747:-1:exon

7498714
type: Gene
SIO_000068: ncbigene

position:198682:-1
position: 198682
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:198747:-1
position: 198747
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:198682-198747:-1:exon

ViviM_r001
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: 18Srrn
locus tag: ViviM_r001
so part of: sequence
location: 206052..208197
location: region:206052-208197:1
so has part: feature:206052-208197:1:exon
subclass of: SO_0000573

7498754
type: Gene
SIO_000068: ncbigene

position:206052:1
position: 206052
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:208197:1
position: 208197
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:206052-208197:1:exon

ViviM_r001
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 29760
gene: 18Srrn
locus tag: ViviM_r001
product: 18S ribosomal RNA
SIO_010081: ViviM_r001
subclass of: SO_0000673
so part of: ViviM_r001
location: 206052..208197
location: region:206052-208197:1
so has part: feature:206052-208197:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:206052-208197:1:exon

ViviM_r002
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: 5Srrn
locus tag: ViviM_r002
so part of: sequence
location: 208362..208480
location: region:208362-208480:1
so has part: feature:208362-208480:1:exon
subclass of: SO_0000573

7498744
type: Gene
SIO_000068: ncbigene

position:208362:1
position: 208362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:208480:1
position: 208480
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:208362-208480:1:exon

ViviM_r002
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 29760
gene: 5Srrn
locus tag: ViviM_r002
product: 5S ribosomal RNA
SIO_010081: ViviM_r002
subclass of: SO_0000673
so part of: ViviM_r002
location: 208362..208480
location: region:208362-208480:1
so has part: feature:208362-208480:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:208362-208480:1:exon

ViviM_p042
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: atp6
locus tag: ViviM_p042
so part of: sequence
location: complement(228577..229743)
location: region:228577-229743:-1
so has part: feature:228577-229743:-1:exon
subclass of: SO_0000010

7498515
type: Gene
SIO_000068: ncbigene

position:228577:-1
position: 228577
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:229743:-1
position: 229743
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:228577-229743:-1:exon

ViviM_p042
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: atp6
locus tag: ViviM_p042
codon start: 1
product: ATP synthase F0 subunit 6
translation: MSPTEIGTYVSSLGLCKSISTLIFIRAAWIPDLDQTNYREKISEIGAETLRGQLSDRFEFLLKEKGLQHLPEGYTIPYVMNQVHNNNKTNDIPTLKGIWENVNIYGLHSQYYQEALDIMDDLWGARTHSPLEQFSILPLIPMNIGNLYFSFTNPSLFMLLTLSLVLLLVHFVTKNGGGNPVPNAWQSLVEFIHDFVPNPVNEQIGGLSGNVKQKFFPRISVTFTFSLFRNPQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSFSLPAGVPLPLAPFLVLLELIPHCFRALSSGIRLFANMMAGHSSVKILSGFAWTMLCMNDLLYFIGDPGPFFIVLALTGPELGVAISQAHVSTISICIYLNDATNLHQRWFFIYN
SIO_010081: ViviM_p042
subclass of: SO_0000673
so part of: ViviM_p042
location: complement(228577..229743)
location: region:228577-229743:-1
so has part: feature:228577-229743:-1:exon

YP_002608361.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:228577-229743:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 29760
note: horizontally transferred from chloroplast DNA
so part of: sequence
location: 235673..242934
location: region:235673-242934:1
so has part: feature:235673-242934:1:region

position:235673:1
position: 235673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:242934:1
position: 242934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:235673-242934:1:region

ViviM_p043
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: ndhH
locus tag: ViviM_p043
note: NADH dehydrogenase 49 kD subunit
pseudo: true
so part of: sequence
location: complement(235673..236164)
location: region:235673-236164:-1
so has part: feature:235673-236164:-1:exon

7498747
type: Gene
SIO_000068: ncbigene

position:235673:-1
position: 235673
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:236164:-1
position: 236164
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:235673-236164:-1:exon

ViviM_p044
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: rps15
locus tag: ViviM_p044
so part of: sequence
location: complement(236268..236534)
location: region:236268-236534:-1
so has part: feature:236268-236534:-1:exon
subclass of: SO_0000010

7498561
type: Gene
SIO_000068: ncbigene

position:236268:-1
position: 236268
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:236534:-1
position: 236534
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:236268-236534:-1:exon

ViviM_p044
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: rps15
locus tag: ViviM_p044
note: chloroplast
codon start: 1
product: ribosomal protein S15
translation: MVKNLFISVISQKEANRGSVEFQVFSFTNKIRRLTSHLELHRKDYLSQRGLRKILGKRQRLLSYLAKKNRVRYKELIGQLGIRETKIR
SIO_010081: ViviM_p044
subclass of: SO_0000673
so part of: ViviM_p044
location: complement(236268..236534)
location: region:236268-236534:-1
so has part: feature:236268-236534:-1:exon

YP_002608362.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:236268-236534:-1:exon

ViviM_p045
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: ycf1
locus tag: ViviM_p045
pseudo: true
so part of: sequence
location: complement(236842..242534)
location: region:236842-242534:-1
so has part: feature:236842-242534:-1:exon

7498709
type: Gene
SIO_000068: ncbigene

position:236842:-1
position: 236842
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:242534:-1
position: 242534
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:236842-242534:-1:exon

ViviM_t004
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: tRNA-Asn (GUU)
locus tag: ViviM_t004
so part of: sequence
location: 242856..242927
location: region:242856-242927:1
so has part: feature:242856-242927:1:exon
subclass of: SO_0000663

7498741
type: Gene
SIO_000068: ncbigene

position:242856:1
position: 242856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:242927:1
position: 242927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:242856-242927:1:exon

ViviM_t004
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 29760
gene: tRNA-Asn (GUU)
locus tag: ViviM_t004
product: tRNA-Asn
note: chloroplast type
codon recognized: AAC
SIO_010081: ViviM_t004
subclass of: SO_0000673
so part of: ViviM_t004
location: 242856..242927
location: region:242856-242927:1
so has part: feature:242856-242927:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:242856-242927:1:exon

ViviM_t005
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: tRNA-Glu (UUC)
locus tag: ViviM_t005
so part of: sequence
location: complement(244143..244214)
location: region:244143-244214:-1
so has part: feature:244143-244214:-1:exon
subclass of: SO_0000663

7498718
type: Gene
SIO_000068: ncbigene

position:244143:-1
position: 244143
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:244214:-1
position: 244214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:244143-244214:-1:exon

ViviM_t005
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 29760
gene: tRNA-Glu (UUC)
locus tag: ViviM_t005
product: tRNA-Glu
note: mitochondrial type
codon recognized: GAA
SIO_010081: ViviM_t005
subclass of: SO_0000673
so part of: ViviM_t005
location: complement(244143..244214)
location: region:244143-244214:-1
so has part: feature:244143-244214:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:244143-244214:-1:exon

ViviM_t006
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: tRNA-His (GUG)
locus tag: ViviM_t006
so part of: sequence
location: 246745..246818
location: region:246745-246818:1
so has part: feature:246745-246818:1:exon
subclass of: SO_0000663

7498723
type: Gene
SIO_000068: ncbigene

position:246745:1
position: 246745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:246818:1
position: 246818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:246745-246818:1:exon

ViviM_t006
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 29760
gene: tRNA-His (GUG)
locus tag: ViviM_t006
product: tRNA-His
note: chloroplast type
codon recognized: CAC
SIO_010081: ViviM_t006
subclass of: SO_0000673
so part of: ViviM_t006
location: 246745..246818
location: region:246745-246818:1
so has part: feature:246745-246818:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:246745-246818:1:exon

ViviM_t006
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 29760
gene: tRNA-His (GUG)
locus tag: ViviM_t006
note: horizontally transferred from chloroplast DNA
SIO_010081: ViviM_t006
subclass of: SO_0000673
so part of: ViviM_t006
location: 246745..246818
location: region:246745-246818:1
so has part: feature:246745-246818:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:246745-246818:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 29760
note: horizontally transferred from chloroplast DNA
so part of: sequence
location: 250617..250788
location: region:250617-250788:1
so has part: feature:250617-250788:1:region

position:250617:1
position: 250617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:250788:1
position: 250788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:250617-250788:1:region

ViviM_p046
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: atpI
locus tag: ViviM_p046
pseudo: true
so part of: sequence
location: complement(250680..250788)
location: region:250680-250788:-1
so has part: feature:250680-250788:-1:exon

7498726
type: Gene
SIO_000068: ncbigene

position:250680:-1
position: 250680
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:250788:-1
position: 250788
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:250680-250788:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 29760
note: horizontally transferred from chloroplast DNA; psbA CDS goes beyond the region of similarity with cpDNA of Vitis
so part of: sequence
location: 268066..273141
location: region:268066-273141:1
so has part: feature:268066-273141:1:region

position:268066:1
position: 268066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:273141:1
position: 273141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:268066-273141:1:region

ViviM_p047
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: rps16
locus tag: ViviM_p047
note: exon 2
pseudo: true
so part of: sequence
location: 268096..268307
location: region:268096-268307:1
so has part: feature:268096-268307:1:exon

7498751
type: Gene
SIO_000068: ncbigene

position:268096:1
position: 268096
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:268307:1
position: 268307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:268096-268307:1:exon

ViviM_t007
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: tRNA-Lys (UUU)
locus tag: ViviM_t007
so part of: sequence
location: 269257..271838
location: region:269257-271838:1
so has part: feature:269257-271838:1:exon
subclass of: SO_0000663

7498710
type: Gene
SIO_000068: ncbigene

position:269257:1
position: 269257
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:271838:1
position: 271838
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:269257-271838:1:exon

ViviM_t007
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 29760
gene: tRNA-Lys (UUU)
locus tag: ViviM_t007
product: tRNA-Lys
note: chloroplast type
codon recognized: AAA
SIO_010081: ViviM_t007
subclass of: SO_0000673
so part of: ViviM_t007
location: join(269257..269293,271804..271838)
location: region:269257-271838:1
so has part: feature:269257-269293:1:exon
so has part: feature:271804-271838:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:269257-269293:1:exon

position:269293:1
position: 269293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:271804-271838:1:exon

position:271804:1
position: 271804
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ViviM_p048
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: matK
locus tag: ViviM_p048
note: maturase K
pseudo: true
so part of: sequence
location: 270031..271535
location: region:270031-271535:1
so has part: feature:270031-271535:1:exon

7498729
type: Gene
SIO_000068: ncbigene

position:270031:1
position: 270031
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:271535:1
position: 271535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:270031-271535:1:exon

ViviM_p049
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: psbA
locus tag: ViviM_p049
so part of: sequence
location: 272086..273933
location: region:272086-273933:1
so has part: feature:272086-273933:1:exon
subclass of: SO_0000010

7498542
type: Gene
SIO_000068: ncbigene

position:272086:1
position: 272086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:273933:1
position: 273933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:272086-273933:1:exon

ViviM_p049
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: psbA
locus tag: ViviM_p049
note: chloroplast
codon start: 1
product: PSII 32 kDa protein
translation: MTVILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANAGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVEAPSINTEAKWFMIESQRHSFHLVDPSPIEQVPSEPWDWHCLTAKTEMMTFSFALLFFIGGLLLLHFLKKKNFSRDIFHANSLSLDRTLFFFLFLLIIIHNIHFTVGFCDCNRLSPPLELPSQVHPELPQPGIPQEEPVVQPPEVPRLDQPLMPDDVRFGELRDRLTIYFLGRNELRHLAQFAGILQKAVLLEKKIEAALVFDGYDRNVILLQRHHIRGFLFLHPTRALVLSERTLDRYLNEIQINGTRQSVPYTRVVRAIRNQHIILL
SIO_010081: ViviM_p049
subclass of: SO_0000673
so part of: ViviM_p049
location: 272086..273933
location: region:272086-273933:1
so has part: feature:272086-273933:1:exon

YP_002608363.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:272086-273933:1:exon

ViviM_p050
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: nad4L
locus tag: ViviM_p050
so part of: sequence
location: 274032..274334
location: region:274032-274334:1
so has part: feature:274032-274334:1:exon
subclass of: SO_0000010

7498582
type: Gene
SIO_000068: ncbigene

position:274032:1
position: 274032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:274334:1
position: 274334
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:274032-274334:1:exon

ViviM_p050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: nad4L
locus tag: ViviM_p050
exception: RNA editing
codon start: 1
product: NADH dehydrogenase subunit 4L
translation: MDPIKYFTFSMIISILGIRGILLNRRNIPIMSMPIESMLLAVNSNFLVFSVSSDDMMGQSFASLVPTVAAAESAIGLAIFVITFRVRGTIAVESINSIQG
SIO_010081: ViviM_p050
subclass of: SO_0000673
so part of: ViviM_p050
location: 274032..274334
location: region:274032-274334:1
so has part: feature:274032-274334:1:exon

YP_002608364.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:274032-274334:1:exon

ViviM_p051
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: atp4
locus tag: ViviM_p051
so part of: sequence
location: 274514..275110
location: region:274514-275110:1
so has part: feature:274514-275110:1:exon
subclass of: SO_0000010

7498549
type: Gene
SIO_000068: ncbigene

position:274514:1
position: 274514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:275110:1
position: 275110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:274514-275110:1:exon

ViviM_p051
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: atp4
locus tag: ViviM_p051
codon start: 1
product: ATPase subunit 4
translation: MRLSSTNMQARKMLFAAIPSICASSSKKISIYNEEMIVARCFIGFIILSRKSLGKTLKVTLDGRIQAIQEESQQFPNPNEVVPPESNEQQRLLRISLRICGTVVESLPMARCAPKCEKTVQALLCRNLNVKSATLPNATSSRRIRLQDDLVTGFHFSVSERFVPGCTLKASIVELIREGLAVLRMVRVGGSLKNKEDE
SIO_010081: ViviM_p051
subclass of: SO_0000673
so part of: ViviM_p051
location: 274514..275110
location: region:274514-275110:1
so has part: feature:274514-275110:1:exon

YP_002608365.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:274514-275110:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 29760
note: horizontally transferred from chloroplast DNA
so part of: sequence
location: 282259..282511
location: region:282259-282511:1
so has part: feature:282259-282511:1:region

position:282259:1
position: 282259
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:282511:1
position: 282511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:282259-282511:1:region

ViviM_p052
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: rps11
locus tag: ViviM_p052
note: ribosomal protein S11
pseudo: true
so part of: sequence
location: 282265..282497
location: region:282265-282497:1
so has part: feature:282265-282497:1:exon

7498746
type: Gene
SIO_000068: ncbigene

position:282265:1
position: 282265
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:282497:1
position: 282497
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:282265-282497:1:exon

ViviM_t008
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: tRNA-Ser (GCU)
locus tag: ViviM_t008
so part of: sequence
location: 284594..284681
location: region:284594-284681:1
so has part: feature:284594-284681:1:exon
subclass of: SO_0000663

7498707
type: Gene
SIO_000068: ncbigene

position:284594:1
position: 284594
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:284681:1
position: 284681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:284594-284681:1:exon

ViviM_t008
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 29760
gene: tRNA-Ser (GCU)
locus tag: ViviM_t008
product: tRNA-Ser
note: mitochondrial type
codon recognized: AGC
SIO_010081: ViviM_t008
subclass of: SO_0000673
so part of: ViviM_t008
location: 284594..284681
location: region:284594-284681:1
so has part: feature:284594-284681:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:284594-284681:1:exon

ViviM_t009
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: tRNA-Phe (GAA)
locus tag: ViviM_t009
so part of: sequence
location: 285041..285114
location: region:285041-285114:1
so has part: feature:285041-285114:1:exon
subclass of: SO_0000663

7498736
type: Gene
SIO_000068: ncbigene

position:285041:1
position: 285041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:285114:1
position: 285114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:285041-285114:1:exon

ViviM_t009
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 29760
gene: tRNA-Phe (GAA)
locus tag: ViviM_t009
product: tRNA-Phe
note: mitochondrial type
codon recognized: UUC
SIO_010081: ViviM_t009
subclass of: SO_0000673
so part of: ViviM_t009
location: 285041..285114
location: region:285041-285114:1
so has part: feature:285041-285114:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:285041-285114:1:exon

ViviM_t010
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: tRNA-Pro (UGG)
locus tag: ViviM_t010
so part of: sequence
location: 285408..285482
location: region:285408-285482:1
so has part: feature:285408-285482:1:exon
subclass of: SO_0000663

7498733
type: Gene
SIO_000068: ncbigene

position:285408:1
position: 285408
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:285482:1
position: 285482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:285408-285482:1:exon

ViviM_t010
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 29760
gene: tRNA-Pro (UGG)
locus tag: ViviM_t010
product: tRNA-Pro
note: mitochondrial type
codon recognized: CCA
SIO_010081: ViviM_t010
subclass of: SO_0000673
so part of: ViviM_t010
location: 285408..285482
location: region:285408-285482:1
so has part: feature:285408-285482:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:285408-285482:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 29760
note: horizontally transferred from chloroplast DNA
so part of: sequence
location: 291324..291783
location: region:291324-291783:1
so has part: feature:291324-291783:1:region

position:291324:1
position: 291324
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:291783:1
position: 291783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:291324-291783:1:region

ViviM_t011
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: tRNA-Trp (CCA)
locus tag: ViviM_t011
so part of: sequence
location: complement(291376..291449)
location: region:291376-291449:-1
so has part: feature:291376-291449:-1:exon
subclass of: SO_0000663

7498734
type: Gene
SIO_000068: ncbigene

position:291376:-1
position: 291376
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:291449:-1
position: 291449
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:291376-291449:-1:exon

ViviM_t011
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 29760
gene: tRNA-Trp (CCA)
locus tag: ViviM_t011
product: tRNA-Trp
note: chloroplast type
codon recognized: UGG
SIO_010081: ViviM_t011
subclass of: SO_0000673
so part of: ViviM_t011
location: complement(291376..291449)
location: region:291376-291449:-1
so has part: feature:291376-291449:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:291376-291449:-1:exon

ViviM_t012
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: tRNA-Pro (UGG)
locus tag: ViviM_t012
so part of: sequence
location: complement(291604..291677)
location: region:291604-291677:-1
so has part: feature:291604-291677:-1:exon
subclass of: SO_0000663

7498738
type: Gene
SIO_000068: ncbigene

position:291604:-1
position: 291604
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:291677:-1
position: 291677
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:291604-291677:-1:exon

ViviM_t012
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 29760
gene: tRNA-Pro (UGG)
locus tag: ViviM_t012
product: tRNA-Pro
note: chloroplast type
codon recognized: CCA
SIO_010081: ViviM_t012
subclass of: SO_0000673
so part of: ViviM_t012
location: complement(291604..291677)
location: region:291604-291677:-1
so has part: feature:291604-291677:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:291604-291677:-1:exon

ViviM_p053
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: nad9
locus tag: ViviM_p053
so part of: sequence
location: complement(292426..292998)
location: region:292426-292998:-1
so has part: feature:292426-292998:-1:exon
subclass of: SO_0000010

7498660
type: Gene
SIO_000068: ncbigene

position:292426:-1
position: 292426
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:292998:-1
position: 292998
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:292426-292998:-1:exon

ViviM_p053
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: nad9
locus tag: ViviM_p053
codon start: 1
product: NADH dehydrogenase subunit 9
translation: MDNQSIFKYSWETFPKKWVRKMERSEHGNRSDTNTDYPFQLLCFLKLHTYTRVQVSIDICGVDHPSRKRRFEVVYNLLSTRYNSRIRVQTSADEVTRISPVVSPFPSAGRWEREVWDMFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRYFDSASPWEQRSDG
SIO_010081: ViviM_p053
subclass of: SO_0000673
so part of: ViviM_p053
location: complement(292426..292998)
location: region:292426-292998:-1
so has part: feature:292426-292998:-1:exon

YP_002608366.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:292426-292998:-1:exon

ViviM_p054
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
locus tag: ViviM_p054
note: 26S ribosomal RNA
pseudo: true
so part of: sequence
location: 301745..301995
location: region:301745-301995:1
so has part: feature:301745-301995:1:exon

7498762
type: Gene
SIO_000068: ncbigene

position:301745:1
position: 301745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:301995:1
position: 301995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:301745-301995:1:exon

ViviM_p055
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: ccmC
locus tag: ViviM_p055
so part of: sequence
location: 303096..303848
location: region:303096-303848:1
so has part: feature:303096-303848:1:exon
subclass of: SO_0000010

7498513
type: Gene
SIO_000068: ncbigene

position:303096:1
position: 303096
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:303848:1
position: 303848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:303096-303848:1:exon

ViviM_p055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: ccmC
locus tag: ViviM_p055
codon start: 1
product: cytochrome c biogenesis C
translation: MSVSLLHPYLLMSKTRSYAQILIGSRLFLTAMAIHLSLRVAPLDLQQSGNSRIPYVHVPAARMSILVYIATAINTLLFLLTKHPLFLRSSGTGTEMGAFSTLFTLVTGGVRGRPMWGTFWVWDARLTSVFISFIIYLGALRFQKLPVEPAPISIRAGPIDIPIIKYPVNWWNTSHQPGSISRSGTSIHVPMPIPILSNFANSPFSTRILFVLETRLPIPSFPESRLTEEIEALEGIPKPSSLAESLCIHG
SIO_010081: ViviM_p055
subclass of: SO_0000673
so part of: ViviM_p055
location: 303096..303848
location: region:303096-303848:1
so has part: feature:303096-303848:1:exon

YP_002608367.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:303096-303848:1:exon

ViviM_t013
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: tRNA-Ile (UAU)
locus tag: ViviM_t013
so part of: sequence
location: 303835..303920
location: region:303835-303920:1
so has part: feature:303835-303920:1:exon
subclass of: SO_0000663

7498753
type: Gene
SIO_000068: ncbigene

position:303835:1
position: 303835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:303920:1
position: 303920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:303835-303920:1:exon

ViviM_t013
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 29760
gene: tRNA-Ile (UAU)
locus tag: ViviM_t013
product: tRNA-Ile
note: chloroplast type?
codon recognized: AUA
SIO_010081: ViviM_t013
subclass of: SO_0000673
so part of: ViviM_t013
location: 303835..303920
location: region:303835-303920:1
so has part: feature:303835-303920:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:303835-303920:1:exon

ViviM_t013
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 29760
gene: tRNA-Ile (UAU)
locus tag: ViviM_t013
note: horizontally transferred from chloroplast DNA
SIO_010081: ViviM_t013
subclass of: SO_0000673
so part of: ViviM_t013
location: 303835..303920
location: region:303835-303920:1
so has part: feature:303835-303920:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:303835-303920:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 29760
note: horizontally transferred from chloroplast DNA
so part of: sequence
location: 311184..311328
location: region:311184-311328:1
so has part: feature:311184-311328:1:region

position:311184:1
position: 311184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:311328:1
position: 311328
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:311184-311328:1:region

ViviM_p056
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: ndhE
locus tag: ViviM_p056
note: NADH dehydrogenase ND4L subunit
pseudo: true
so part of: sequence
location: complement(311184..311323)
location: region:311184-311323:-1
so has part: feature:311184-311323:-1:exon

7498727
type: Gene
SIO_000068: ncbigene

position:311184:-1
position: 311184
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:311323:-1
position: 311323
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:311184-311323:-1:exon

ViviM_t014
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: tRNA-Lys (UUU)
locus tag: ViviM_t014
so part of: sequence
location: complement(318530..318602)
location: region:318530-318602:-1
so has part: feature:318530-318602:-1:exon
subclass of: SO_0000663

7498764
type: Gene
SIO_000068: ncbigene

position:318530:-1
position: 318530
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:318602:-1
position: 318602
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:318530-318602:-1:exon

ViviM_t014
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 29760
gene: tRNA-Lys (UUU)
locus tag: ViviM_t014
product: tRNA-Lys
note: mitochondrial type
codon recognized: AAA
SIO_010081: ViviM_t014
subclass of: SO_0000673
so part of: ViviM_t014
location: complement(318530..318602)
location: region:318530-318602:-1
so has part: feature:318530-318602:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:318530-318602:-1:exon

ViviM_p057
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: atp9
locus tag: ViviM_p057
note: ATPase subunit 9
pseudo: true
so part of: sequence
location: complement(353259..353359)
location: region:353259-353359:-1
so has part: feature:353259-353359:-1:exon

7498730
type: Gene
SIO_000068: ncbigene

position:353259:-1
position: 353259
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:353359:-1
position: 353359
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:353259-353359:-1:exon

ViviM_t015
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: tRNA-Met (CAU)
locus tag: ViviM_t015
so part of: sequence
location: 354707..354780
location: region:354707-354780:1
so has part: feature:354707-354780:1:exon
subclass of: SO_0000663

7498748
type: Gene
SIO_000068: ncbigene

position:354707:1
position: 354707
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:354780:1
position: 354780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:354707-354780:1:exon

ViviM_t015
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 29760
gene: tRNA-Met (CAU)
locus tag: ViviM_t015
product: tRNA-Met
note: mitochondrial type
codon recognized: AUG
SIO_010081: ViviM_t015
subclass of: SO_0000673
so part of: ViviM_t015
location: 354707..354780
location: region:354707-354780:1
so has part: feature:354707-354780:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:354707-354780:1:exon

ViviM_p058
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: tatC
locus tag: ViviM_p058
note: Sec-independent protein translocase protein TatC
pseudo: true
so part of: sequence
location: complement(359219..360000)
location: region:359219-360000:-1
so has part: feature:359219-360000:-1:exon

7498731
type: Gene
SIO_000068: ncbigene

position:359219:-1
position: 359219
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:360000:-1
position: 360000
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:359219-360000:-1:exon

ViviM_t016
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: tRNA-Ser (UGA)
locus tag: ViviM_t016
so part of: sequence
location: complement(381587..381673)
location: region:381587-381673:-1
so has part: feature:381587-381673:-1:exon
subclass of: SO_0000663

7498716
type: Gene
SIO_000068: ncbigene

position:381587:-1
position: 381587
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:381673:-1
position: 381673
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:381587-381673:-1:exon

ViviM_t016
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 29760
gene: tRNA-Ser (UGA)
locus tag: ViviM_t016
product: tRNA-Ser
note: mitochondrial type
codon recognized: UCA
SIO_010081: ViviM_t016
subclass of: SO_0000673
so part of: ViviM_t016
location: complement(381587..381673)
location: region:381587-381673:-1
so has part: feature:381587-381673:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:381587-381673:-1:exon

ViviM_t017
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: tRNA-Asn (GUU)
locus tag: ViviM_t017
so part of: sequence
location: complement(417117..417189)
location: region:417117-417189:-1
so has part: feature:417117-417189:-1:exon
subclass of: SO_0000663

7498737
type: Gene
SIO_000068: ncbigene

position:417117:-1
position: 417117
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:417189:-1
position: 417189
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:417117-417189:-1:exon

ViviM_t017
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 29760
gene: tRNA-Asn (GUU)
locus tag: ViviM_t017
product: tRNA-Asn
note: chloroplast type
codon recognized: AAC
SIO_010081: ViviM_t017
subclass of: SO_0000673
so part of: ViviM_t017
location: complement(417117..417189)
location: region:417117-417189:-1
so has part: feature:417117-417189:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:417117-417189:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 29760
note: horizontally transferred from chloroplast DNA
so part of: sequence
location: 417117..417189
location: region:417117-417189:1
so has part: feature:417117-417189:1:region

position:417117:1
position: 417117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:417189:1
position: 417189
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:417117-417189:1:region

ViviM_p059
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: rpl2
locus tag: ViviM_p059
so part of: sequence
location: 422356..425243
location: region:422356-425243:1
so has part: feature:422356-425243:1:exon
subclass of: SO_0000010

7498640
type: Gene
SIO_000068: ncbigene

position:422356:1
position: 422356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:425243:1
position: 425243
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:422356-425243:1:exon

ViviM_p059
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: rpl2
locus tag: ViviM_p059
codon start: 1
product: ribosomal protein L2
translation: MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVEWIEYDPNRSSRIAPVRWIEGVQLRRQRKCNTIEEFAPPRKILEPTTTTIRGLFSFSSLPGKVDQRKVACFSPGPMAAYVVVGLPTRMPPWSKSPFTSKGAGSKKTCAKDVFFSAFSSPKAKGETSSLSFGSSFGFPRIAVAGAKPAFFAPRMREKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWQSFRRQETLGLVGAAEHNESKPKTDQGFYSKPIGEGPKDGACKVDRAPVTYIIASHQLEAGKMVMNCDWSKPSTSDLLRPARNAHTY
SIO_010081: ViviM_p059
subclass of: SO_0000673
so part of: ViviM_p059
location: join(422356..423242,425126..425243)
location: region:422356-425243:1
so has part: feature:422356-423242:1:exon
so has part: feature:425126-425243:1:exon

YP_002608368.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:422356-423242:1:exon

position:423242:1
position: 423242
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:425126-425243:1:exon

position:425126:1
position: 425126
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ViviM_p060
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: rps19
locus tag: ViviM_p060
so part of: sequence
location: 425800..426084
location: region:425800-426084:1
so has part: feature:425800-426084:1:exon
subclass of: SO_0000010

7498601
type: Gene
SIO_000068: ncbigene

position:425800:1
position: 425800
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:426084:1
position: 426084
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:425800-426084:1:exon

ViviM_p060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: rps19
locus tag: ViviM_p060
codon start: 1
product: ribosomal protein S19
translation: MPRRSIWKGSFVDAFLLRMKKKRDLLLNRKIWSRRSSISPDFVDCSVRIYNGKTPVRCKITEGKVGHKFGEFASTRKRRPSRTNIGPGRKKGKK
SIO_010081: ViviM_p060
subclass of: SO_0000673
so part of: ViviM_p060
location: 425800..426084
location: region:425800-426084:1
so has part: feature:425800-426084:1:exon

YP_002608369.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:425800-426084:1:exon

ViviM_p061
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: rps3
locus tag: ViviM_p061
so part of: sequence
location: 426098..429801
location: region:426098-429801:1
so has part: feature:426098-429801:1:exon
subclass of: SO_0000010

7498623
type: Gene
SIO_000068: ncbigene

position:426098:1
position: 426098
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:429801:1
position: 429801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:426098-429801:1:exon

ViviM_p061
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: rps3
locus tag: ViviM_p061
codon start: 1
product: ribosomal protein S3
translation: MARKGNPISVRLDLNRSSDSSWFSDYYYGKSVYQDVNLRSYFGSIRPPTRLTFGFRLGRCIILHFPKRTFIHFFLPRRPRGLKRREKSRPGKEKGRWWAFGKVGPIGCLHSSDGTEEERNEVRGRGAGKRVESIRLDDREKQNERRIWPKKKQRYGYHDQSPSIKKNLSKLLRVSGAFKHLKYAGVVNDIAFLIENDDSFRKTKLFKFFFPKKSRSDGPTSHILKRTLPAVRPSLNYSVMQYLLNTKNQIHFDSVVVLNHFVAPGVAEPSTMGGANAQGRSLDKRIRSRIAFFVESSTSEKKCLAEAKKRLTHFIRQANDLRFAGTTKTTISLFPFFGATFFFPRDGVGVYNNLFFEDAREQLLGQLRIKCWNLMGKDKVMELIDKFIDLGGIGELIKGIEMMIEIILRNRRIPYGYNSYLNEVKKMRSLLSNRTNTNTLIESVKIKSVYQSASPIAQDISFQPRNKTRSFRSIFSKIVKDIPLVMKKGVEGIRICCSGRSEGAEIARTECGKYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISYSKKKKGRAISETYEI
SIO_010081: ViviM_p061
subclass of: SO_0000673
so part of: ViviM_p061
location: join(426098..426171,428184..429801)
location: region:426098-429801:1
so has part: feature:426098-426171:1:exon
so has part: feature:428184-429801:1:exon

YP_002608370.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:426098-426171:1:exon

position:426171:1
position: 426171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:428184-429801:1:exon

position:428184:1
position: 428184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ViviM_p062
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: rpl16
locus tag: ViviM_p062
so part of: sequence
location: 429650..430207
location: region:429650-430207:1
so has part: feature:429650-430207:1:exon
subclass of: SO_0000010

7498627
type: Gene
SIO_000068: ncbigene

position:429650:1
position: 429650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:430207:1
position: 430207
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:429650-430207:1:exon

ViviM_p062
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: rpl16
locus tag: ViviM_p062
codon start: 1
product: ribosomal protein L16
translation: MEKHLVMYLTRKSIMLLRKYLLVTESQVSKCGFHIVKKKRDVLYPKRTKYSKYRKGRCSRGREPDGTQLGFGRYGTQSCRAGRLSYRAIEAARRATIGQFHRAMSGQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQWS
SIO_010081: ViviM_p062
subclass of: SO_0000673
so part of: ViviM_p062
location: 429650..430207
location: region:429650-430207:1
so has part: feature:429650-430207:1:exon

YP_002608371.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:429650-430207:1:exon

ViviM_p063
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: orf333
locus tag: ViviM_p063
so part of: sequence
location: complement(448076..448741)
location: region:448076-448741:-1
so has part: feature:448076-448741:-1:exon
subclass of: SO_0000010

7498599
type: Gene
SIO_000068: ncbigene

position:448076:-1
position: 448076
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:448741:-1
position: 448741
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:448076-448741:-1:exon

ViviM_p063
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: orf333
locus tag: ViviM_p063
note: similar to orf135 in Brassica; contains RT_LTR conserved domain. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. Reverse transcriptases (RTs) from retrotransposons and retroviruses which have long terminal repeats (LTRs) in their DNA copies but not in their RNA template. RT catalyzes DNA replication from an RNA template, and is responsible for the replication of retroelements.
codon start: 1
product: orf333
translation: MSCLMSSIIRNRLEGKLIMDLVPVTKPPARAPYRMSQPELAELRKKLKELLDAGLLQPAKSPYGAPVLFQKKQDGSLRMCVDYRALNKVTFRNNYPIPLVADCFDPLSKARVFTKLDLRSGYWQVRISEGDESKTTCVTRYGAYEFLVMPFGLTNAPATFCTLMNQVVRDYLENFVVVYLDDIVIYSSSFEEHSVHLRKVFTRLREHELYVVEMLFCLNED
SIO_010081: ViviM_p063
subclass of: SO_0000673
so part of: ViviM_p063
location: complement(448076..448741)
location: region:448076-448741:-1
so has part: feature:448076-448741:-1:exon

YP_002608372.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:448076-448741:-1:exon

ViviM_p064
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: rps13
locus tag: ViviM_p064
so part of: sequence
location: 451245..451595
location: region:451245-451595:1
so has part: feature:451245-451595:1:exon
subclass of: SO_0000010

7498567
type: Gene
SIO_000068: ncbigene

position:451245:1
position: 451245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:451595:1
position: 451595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:451245-451595:1:exon

ViviM_p064
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: rps13
locus tag: ViviM_p064
codon start: 1
product: ribosomal protein S13
translation: MSYISGARSVADEQVRIASTKMDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHVVHWELKRGERADIERLISISRYRGICHQDGSPLRGQRTHTNARTCRKRIRK
SIO_010081: ViviM_p064
subclass of: SO_0000673
so part of: ViviM_p064
location: 451245..451595
location: region:451245-451595:1
so has part: feature:451245-451595:1:exon

YP_002608373.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:451245-451595:1:exon

ViviM_p065
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: orf102
locus tag: ViviM_p065
so part of: sequence
location: 452119..452424
location: region:452119-452424:1
so has part: feature:452119-452424:1:exon
subclass of: SO_0000010

7498618
type: Gene
SIO_000068: ncbigene

position:452119:1
position: 452119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:452424:1
position: 452424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:452119-452424:1:exon

ViviM_p065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: orf102
locus tag: ViviM_p065
note: similar to orf100b in Brassica, URF-1 in Citrullus lanatus
codon start: 1
product: orf102
translation: MSLKQSVLSLLYFRIPRMSRPILTSFMRSWTTKPPPQRKMSPTPARTTILIVIFLAGSVRRDKREMLSISQKQIPPPHAPTVRLPRNRKGGPGARASWVGV
SIO_010081: ViviM_p065
subclass of: SO_0000673
so part of: ViviM_p065
location: 452119..452424
location: region:452119-452424:1
so has part: feature:452119-452424:1:exon

YP_002608374.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:452119-452424:1:exon

ViviM_p066
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: nad1
locus tag: ViviM_p066
note: NADH dehydrogenase subunit 1; exon 5
pseudo: true
so part of: sequence
location: complement(455969..456052)
location: region:455969-456052:-1
so has part: feature:455969-456052:-1:exon

7498766
type: Gene
SIO_000068: ncbigene

position:455969:-1
position: 455969
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:456052:-1
position: 456052
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:455969-456052:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 29760
note: horizontally transferred from chloroplast DNA
so part of: sequence
location: 474436..483167
location: region:474436-483167:1
so has part: feature:474436-483167:1:region

position:474436:1
position: 474436
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:483167:1
position: 483167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:474436-483167:1:region

ViviM_p067
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: ndhF
locus tag: ViviM_p067
note: NADH dehydrogenase subunit 5
pseudo: true
so part of: sequence
location: complement(474436..476659)
location: region:474436-476659:-1
so has part: feature:474436-476659:-1:exon

7498759
type: Gene
SIO_000068: ncbigene

position:474436:-1
position: 474436
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:476659:-1
position: 476659
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:474436-476659:-1:exon

ViviM_p068
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: rpl32
locus tag: ViviM_p068
so part of: sequence
location: 477870..478043
location: region:477870-478043:1
so has part: feature:477870-478043:1:exon
subclass of: SO_0000010

7498560
type: Gene
SIO_000068: ncbigene

position:477870:1
position: 477870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:478043:1
position: 478043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:477870-478043:1:exon

ViviM_p068
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: rpl32
locus tag: ViviM_p068
note: chloroplast
codon start: 1
product: ribosomal protein L32
translation: MAVPKKRTSMSKKRIHKNFWKRKGWWAALKAFALAKSLSTGNSKSFFVRQLNNQTLE
SIO_010081: ViviM_p068
subclass of: SO_0000673
so part of: ViviM_p068
location: 477870..478043
location: region:477870-478043:1
so has part: feature:477870-478043:1:exon

YP_002608375.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:477870-478043:1:exon

ViviM_t018
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: tRNA-Leu (UAG)
locus tag: ViviM_t018
so part of: sequence
location: 479199..479278
location: region:479199-479278:1
so has part: feature:479199-479278:1:exon
subclass of: SO_0000663

7498705
type: Gene
SIO_000068: ncbigene

position:479199:1
position: 479199
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:479278:1
position: 479278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:479199-479278:1:exon

ViviM_t018
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 29760
gene: tRNA-Leu (UAG)
locus tag: ViviM_t018
product: tRNA-Leu
note: chloroplast type
codon recognized: CUA
SIO_010081: ViviM_t018
subclass of: SO_0000673
so part of: ViviM_t018
location: 479199..479278
location: region:479199-479278:1
so has part: feature:479199-479278:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:479199-479278:1:exon

ViviM_p069
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: ccsA
locus tag: ViviM_p069
note: cytochrome c-type synthesis protein
pseudo: true
so part of: sequence
location: 479397..480360
location: region:479397-480360:1
so has part: feature:479397-480360:1:exon

7498728
type: Gene
SIO_000068: ncbigene

position:479397:1
position: 479397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:480360:1
position: 480360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:479397-480360:1:exon

ViviM_p070
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: ndhD
locus tag: ViviM_p070
note: NADH dehydrogenase subunit 4
pseudo: true
so part of: sequence
location: complement(480638..482013)
location: region:480638-482013:-1
so has part: feature:480638-482013:-1:exon

7498755
type: Gene
SIO_000068: ncbigene

position:480638:-1
position: 480638
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:482013:-1
position: 482013
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:480638-482013:-1:exon

ViviM_p071
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: psaC
locus tag: ViviM_p071
so part of: sequence
location: complement(482150..482395)
location: region:482150-482395:-1
so has part: feature:482150-482395:-1:exon
subclass of: SO_0000010

7498557
type: Gene
SIO_000068: ncbigene

position:482150:-1
position: 482150
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:482395:-1
position: 482395
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:482150-482395:-1:exon

ViviM_p071
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: psaC
locus tag: ViviM_p071
note: chloroplast
codon start: 1
product: PSI 9 kDa protein
translation: MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
SIO_010081: ViviM_p071
subclass of: SO_0000673
so part of: ViviM_p071
location: complement(482150..482395)
location: region:482150-482395:-1
so has part: feature:482150-482395:-1:exon

YP_002608376.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:482150-482395:-1:exon

ViviM_p072
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: ndhE
locus tag: ViviM_p072
so part of: sequence
location: complement(482642..482947)
location: region:482642-482947:-1
so has part: feature:482642-482947:-1:exon
subclass of: SO_0000010

7498580
type: Gene
SIO_000068: ncbigene

position:482642:-1
position: 482642
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:482947:-1
position: 482947
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:482642-482947:-1:exon

ViviM_p072
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: ndhE
locus tag: ViviM_p072
note: chloroplast
codon start: 1
product: NADH dehydrogenase subunit 4L
translation: MMLEHVLVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDNRQLKGDILSIFVIAIAAAEAAIGPAIVSSIYRNRKSTRINQSNLLNK
SIO_010081: ViviM_p072
subclass of: SO_0000673
so part of: ViviM_p072
location: complement(482642..482947)
location: region:482642-482947:-1
so has part: feature:482642-482947:-1:exon

YP_002608377.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:482642-482947:-1:exon

ViviM_p073
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: rps3
locus tag: ViviM_p073
note: ribosomal protein S3; exon 1
pseudo: true
so part of: sequence
location: 487848..487873
location: region:487848-487873:1
so has part: feature:487848-487873:1:exon

7498765
type: Gene
SIO_000068: ncbigene

position:487848:1
position: 487848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:487873:1
position: 487873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:487848-487873:1:exon

ViviM_p074
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: rps10
locus tag: ViviM_p074
so part of: sequence
location: 488758..490172
location: region:488758-490172:1
so has part: feature:488758-490172:1:exon
subclass of: SO_0000010

7498628
type: Gene
SIO_000068: ncbigene

position:488758:1
position: 488758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:490172:1
position: 490172
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:488758-490172:1:exon

ViviM_p074
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: rps10
locus tag: ViviM_p074
exception: RNA editing
codon start: 1
product: ribosomal protein S10
translation: MTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVLYTVLRSPHIDKKSREQFEMEIKKQFLVIKTETHELRKKFFRLKRQRIFGAQYEILFYCKTRSDKGKLQRLLRSKILALTLS
SIO_010081: ViviM_p074
subclass of: SO_0000673
so part of: ViviM_p074
location: join(488758..489007,490060..490172)
location: region:488758-490172:1
so has part: feature:488758-489007:1:exon
so has part: feature:490060-490172:1:exon

YP_002608378.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:488758-489007:1:exon

position:489007:1
position: 489007
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:490060-490172:1:exon

position:490060:1
position: 490060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ViviM_p075
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: atp8
locus tag: ViviM_p075
so part of: sequence
location: 490373..490852
location: region:490373-490852:1
so has part: feature:490373-490852:1:exon
subclass of: SO_0000010

7498613
type: Gene
SIO_000068: ncbigene

position:490373:1
position: 490373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:490852:1
position: 490852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:490373-490852:1:exon

ViviM_p075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: atp8
locus tag: ViviM_p075
codon start: 1
product: ATPase subunit 8
translation: MPQLDKFTYFTQFFWSCLFLFTFYIPICNDGDGVLGISRILKLRNQLVSHRGNNIRSNDPNSLEDILRKGFSTGVSYMYSSLFEVSQWCNAVDLLGKRSQITLISCFGEISGSRGMERNIFYLISKSSYSTSSNPGWGITCRNDIMLIHVPHGQGSIVF
SIO_010081: ViviM_p075
subclass of: SO_0000673
so part of: ViviM_p075
location: 490373..490852
location: region:490373-490852:1
so has part: feature:490373-490852:1:exon

YP_002608379.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:490373-490852:1:exon

ViviM_p076
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: cox3
locus tag: ViviM_p076
so part of: sequence
location: 491457..492254
location: region:491457-492254:1
so has part: feature:491457-492254:1:exon
subclass of: SO_0000010

7498521
type: Gene
SIO_000068: ncbigene

position:491457:1
position: 491457
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:492254:1
position: 492254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:491457-492254:1:exon

ViviM_p076
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: cox3
locus tag: ViviM_p076
codon start: 1
product: cytochrome c oxidase subunit 3
translation: MIESQRHSFHLVDPSPWPISGSLGALATTVGGVMYMHPFQGGATLLSLGIIFILYTMFVWWRDVIRESTLEGHHTKVVQLGPRYGSIPFIVSEVMFLFALFRASSHSSLAPTVEIGGIWPPKGIGVLDPREIPFLNTPILPSSGAAVTWAHHAILAGKEKRAVYALVATVLLALVSTGFQGMEYYQAPSTISDSIYGSTFSLATGFHGFHVIIGTLFSIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVRLFLFVSIYWWGGI
SIO_010081: ViviM_p076
subclass of: SO_0000673
so part of: ViviM_p076
location: 491457..492254
location: region:491457-492254:1
so has part: feature:491457-492254:1:exon

YP_002608380.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:491457-492254:1:exon

ViviM_p077
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: sdh4
locus tag: ViviM_p077
so part of: sequence
location: 492182..492613
location: region:492182-492613:1
so has part: feature:492182-492613:1:exon
subclass of: SO_0000010

7498540
type: Gene
SIO_000068: ncbigene

position:492182:1
position: 492182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:492613:1
position: 492613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:492182-492613:1:exon

ViviM_p077
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: sdh4
locus tag: ViviM_p077
codon start: 1
product: succinate dehydrogenase subunit 4
translation: MVLAFCRRGSVIPICLYLLVGRYMKEQISGLRNESSKTKRTGLFQRITAALPLPLIIIYKKVSSTFLPNLSVFWHINEGIEEIMADHVHQEMTRNWILVYLRLFLLIVIKDVFLSLVSFPNKSKNLMDRTLTPGEWIAPAGSL
SIO_010081: ViviM_p077
subclass of: SO_0000673
so part of: ViviM_p077
location: 492182..492613
location: region:492182-492613:1
so has part: feature:492182-492613:1:exon

YP_002608381.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:492182-492613:1:exon

ViviM_p078
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: rps1
locus tag: ViviM_p078
so part of: sequence
location: 494106..494609
location: region:494106-494609:1
so has part: feature:494106-494609:1:exon
subclass of: SO_0000010

7498635
type: Gene
SIO_000068: ncbigene

position:494106:1
position: 494106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:494609:1
position: 494609
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:494106-494609:1:exon

ViviM_p078
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: rps1
locus tag: ViviM_p078
codon start: 1
product: ribosomal protein S1
translation: MFLVDAGPGTPRICMQDEPTGVPINRATRFENKVGSLDLVAGESLIKEQIFERFFIDLVAGESLIKERAAARFNDLVGSTDVVAGEPLLLLPRRLRQNRAWMELNKIWRTNTKVKGFIIEKVKGGYSVAIAGFITFLPFRPRTRKRISNDRFTIESINPKRTNIVVF
SIO_010081: ViviM_p078
subclass of: SO_0000673
so part of: ViviM_p078
location: 494106..494609
location: region:494106-494609:1
so has part: feature:494106-494609:1:exon

YP_002608382.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:494106-494609:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 29760
note: horizontally transferred from chloroplast DNA
so part of: sequence
location: 498165..498514
location: region:498165-498514:1
so has part: feature:498165-498514:1:region

position:498165:1
position: 498165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:498514:1
position: 498514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:498165-498514:1:region

ViviM_p079
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: rps12
locus tag: ViviM_p079
so part of: sequence
location: complement(512254..512631)
location: region:512254-512631:-1
so has part: feature:512254-512631:-1:exon
subclass of: SO_0000010

7498612
type: Gene
SIO_000068: ncbigene

position:512254:-1
position: 512254
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:512631:-1
position: 512631
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:512254-512631:-1:exon

ViviM_p079
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: rps12
locus tag: ViviM_p079
codon start: 1
product: ribosomal protein S12
translation: MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVPTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNSQEHSMVLIRGGRVKDLPGVKFHCIRGVKDLLGIPDRRRGRSKYGAEKPKSI
SIO_010081: ViviM_p079
subclass of: SO_0000673
so part of: ViviM_p079
location: complement(512254..512631)
location: region:512254-512631:-1
so has part: feature:512254-512631:-1:exon

YP_002608383.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:512254-512631:-1:exon

ViviM_p080
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: nad3
locus tag: ViviM_p080
so part of: sequence
location: complement(512680..513036)
location: region:512680-513036:-1
so has part: feature:512680-513036:-1:exon
subclass of: SO_0000010

7498617
type: Gene
SIO_000068: ncbigene

position:512680:-1
position: 512680
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:513036:-1
position: 513036
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:512680-513036:-1:exon

ViviM_p080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: nad3
locus tag: ViviM_p080
codon start: 1
product: NADH dehydrogenase subunit 3
translation: MSEFAPICIYLVISPLVSLIPLGVPFPFASNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIPDPEVTFSFPWAVPPNKIDPFGSWSMMAFLLILTIGSLYEWKRGASDRE
SIO_010081: ViviM_p080
subclass of: SO_0000673
so part of: ViviM_p080
location: complement(512680..513036)
location: region:512680-513036:-1
so has part: feature:512680-513036:-1:exon

YP_002608384.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:512680-513036:-1:exon

ViviM_p081
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: ccmB
locus tag: ViviM_p081
so part of: sequence
location: complement(513323..513943)
location: region:513323-513943:-1
so has part: feature:513323-513943:-1:exon
subclass of: SO_0000010

7498547
type: Gene
SIO_000068: ncbigene

position:513323:-1
position: 513323
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:513943:-1
position: 513943
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:513323-513943:-1:exon

ViviM_p081
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: ccmB
locus tag: ViviM_p081
codon start: 1
product: cytochrome c maturation protein CcmB
translation: MRRLFLEQYHKRIFLSTPITSFFPFLSYIVVTPLMLGFEKDFSCHSNLGPIRIPPLFPFPPAPFPRNEKDDGTLELYYISTSCLPKILLLQLVGHRVFQISRVLSGFPMLLLPYQFGRSGINRLNIFCGSLVLTLMCGILSRLAFGITSCSGWNSSQNPSTSPTLLPPTLYRTFLETEWFHAPSSIGYSSSFVSFFSMSVSISSQD
SIO_010081: ViviM_p081
subclass of: SO_0000673
so part of: ViviM_p081
location: complement(513323..513943)
location: region:513323-513943:-1
so has part: feature:513323-513943:-1:exon

YP_002608385.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:513323-513943:-1:exon

ViviM_p082
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: rpl2
locus tag: ViviM_p082
note: ribosomal protein L2; exon 1
pseudo: true
so part of: sequence
location: complement(521276..521354)
location: region:521276-521354:-1
so has part: feature:521276-521354:-1:exon

7498752
type: Gene
SIO_000068: ncbigene

position:521276:-1
position: 521276
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:521354:-1
position: 521354
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:521276-521354:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 29760
note: horizontally transferred from chloroplast DNA
so part of: sequence
location: 523895..530063
location: region:523895-530063:1
so has part: feature:523895-530063:1:region

position:523895:1
position: 523895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:530063:1
position: 530063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:523895-530063:1:region

ViviM_p083
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: psbB
locus tag: ViviM_p083
note: PSII 47 kDa protein
pseudo: true
so part of: sequence
location: 523895..523964
location: region:523895-523964:1
so has part: feature:523895-523964:1:exon

7498703
type: Gene
SIO_000068: ncbigene

position:523964:1
position: 523964
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:523895-523964:1:exon

ViviM_p084
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: clpP
locus tag: ViviM_p084
note: clp protease catalytic subunit
pseudo: true
so part of: sequence
location: 524117..524345
location: region:524117-524345:1
so has part: feature:524117-524345:1:exon

7498780
type: Gene
SIO_000068: ncbigene

position:524117:1
position: 524117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:524345:1
position: 524345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:524117-524345:1:exon

ViviM_p085
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: rps12
locus tag: ViviM_p085
note: ribosomal protein S12; exon 1
pseudo: true
so part of: sequence
location: 524487..524600
location: region:524487-524600:1
so has part: feature:524487-524600:1:exon

7498756
type: Gene
SIO_000068: ncbigene

position:524487:1
position: 524487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:524600:1
position: 524600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:524487-524600:1:exon

ViviM_p086
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: rpl20
locus tag: ViviM_p086
so part of: sequence
location: 525388..525741
location: region:525388-525741:1
so has part: feature:525388-525741:1:exon
subclass of: SO_0000010

7498616
type: Gene
SIO_000068: ncbigene

position:525388:1
position: 525388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:525741:1
position: 525741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:525388-525741:1:exon

ViviM_p086
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: rpl20
locus tag: ViviM_p086
note: chloroplast
codon start: 1
product: ribosomal protein L20
translation: MTRTRRGYIARRRRTKIRLFTSSFRGAHSRLTRTITQQKIRALVSTHRDRDRQKRDFRRLWITRINAVIHENGASYSYSRFIHDLYKRQLLRNRKRLAQIAISNRNCLYMISNEIIK
SIO_010081: ViviM_p086
subclass of: SO_0000673
so part of: ViviM_p086
location: 525388..525741
location: region:525388-525741:1
so has part: feature:525388-525741:1:exon

YP_002608386.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:525388-525741:1:exon

ViviM_p087
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: rps18
locus tag: ViviM_p087
so part of: sequence
location: complement(526026..526331)
location: region:526026-526331:-1
so has part: feature:526026-526331:-1:exon
subclass of: SO_0000010

7498604
type: Gene
SIO_000068: ncbigene

position:526026:-1
position: 526026
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:526331:-1
position: 526331
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:526026-526331:-1:exon

ViviM_p087
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: rps18
locus tag: ViviM_p087
note: chloroplast
codon start: 1
product: ribosomal protein S18
translation: MDKSKRPFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSSLPFLNNEKQFERTESTARTTGLRTRNK
SIO_010081: ViviM_p087
subclass of: SO_0000673
so part of: ViviM_p087
location: complement(526026..526331)
location: region:526026-526331:-1
so has part: feature:526026-526331:-1:exon

YP_002608387.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:526026-526331:-1:exon

ViviM_p088
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: rpl33
locus tag: ViviM_p088
so part of: sequence
location: complement(526524..526724)
location: region:526524-526724:-1
so has part: feature:526524-526724:-1:exon
subclass of: SO_0000010

7498622
type: Gene
SIO_000068: ncbigene

position:526524:-1
position: 526524
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:526724:-1
position: 526724
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:526524-526724:-1:exon

ViviM_p088
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: rpl33
locus tag: ViviM_p088
note: chloroplast
codon start: 1
product: ribosomal protein L33
translation: MAKSKDARIRVLLECTSCVRDGVNKESTGISRYITEKNRHNTPGRLELQKFCPYCYKHTIHGEIKK
SIO_010081: ViviM_p088
subclass of: SO_0000673
so part of: ViviM_p088
location: complement(526524..526724)
location: region:526524-526724:-1
so has part: feature:526524-526724:-1:exon

YP_002608388.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:526524-526724:-1:exon

ViviM_p089
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: psaJ
locus tag: ViviM_p089
so part of: sequence
location: complement(527167..527298)
location: region:527167-527298:-1
so has part: feature:527167-527298:-1:exon
subclass of: SO_0000010

7498607
type: Gene
SIO_000068: ncbigene

position:527167:-1
position: 527167
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:527298:-1
position: 527298
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:527167-527298:-1:exon

ViviM_p089
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: psaJ
locus tag: ViviM_p089
note: chloroplast
codon start: 1
product: PSI reaction centre subunit IX
translation: MRDLKTYLSTAPVLSTIWFGSLAGLLIEINRLFPDALTFPFFN
SIO_010081: ViviM_p089
subclass of: SO_0000673
so part of: ViviM_p089
location: complement(527167..527298)
location: region:527167-527298:-1
so has part: feature:527167-527298:-1:exon

YP_002608389.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:527167-527298:-1:exon

ViviM_t019
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: tRNA-Pro (UGG)
locus tag: ViviM_t019
so part of: sequence
location: 527680..527753
location: region:527680-527753:1
so has part: feature:527680-527753:1:exon
subclass of: SO_0000663

7498779
type: Gene
SIO_000068: ncbigene

position:527680:1
position: 527680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:527753:1
position: 527753
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:527680-527753:1:exon

ViviM_t019
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 29760
gene: tRNA-Pro (UGG)
locus tag: ViviM_t019
product: tRNA-Pro
note: chloroplast type
codon recognized: CCA
SIO_010081: ViviM_t019
subclass of: SO_0000673
so part of: ViviM_t019
location: 527680..527753
location: region:527680-527753:1
so has part: feature:527680-527753:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:527680-527753:1:exon

ViviM_t020
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: tRNA-Trp (CCA)
locus tag: ViviM_t020
so part of: sequence
location: 527921..527994
location: region:527921-527994:1
so has part: feature:527921-527994:1:exon
subclass of: SO_0000663

7498735
type: Gene
SIO_000068: ncbigene

position:527921:1
position: 527921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:527994:1
position: 527994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:527921-527994:1:exon

ViviM_t020
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 29760
gene: tRNA-Trp (CCA)
locus tag: ViviM_t020
product: tRNA-Trp
note: chloroplast type
codon recognized: UGG
SIO_010081: ViviM_t020
subclass of: SO_0000673
so part of: ViviM_t020
location: 527921..527994
location: region:527921-527994:1
so has part: feature:527921-527994:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:527921-527994:1:exon

ViviM_p090
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: petG
locus tag: ViviM_p090
so part of: sequence
location: complement(528125..528238)
location: region:528125-528238:-1
so has part: feature:528125-528238:-1:exon
subclass of: SO_0000010

7498664
type: Gene
SIO_000068: ncbigene

position:528125:-1
position: 528125
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:528238:-1
position: 528238
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:528125-528238:-1:exon

ViviM_p090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: petG
locus tag: ViviM_p090
note: chloroplast
codon start: 1
product: cyt b6 f complex subunit V
translation: MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL
SIO_010081: ViviM_p090
subclass of: SO_0000673
so part of: ViviM_p090
location: complement(528125..528238)
location: region:528125-528238:-1
so has part: feature:528125-528238:-1:exon

YP_002608390.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:528125-528238:-1:exon

ViviM_p091
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: petL
locus tag: ViviM_p091
so part of: sequence
location: complement(528417..528512)
location: region:528417-528512:-1
so has part: feature:528417-528512:-1:exon
subclass of: SO_0000010

7498575
type: Gene
SIO_000068: ncbigene

position:528417:-1
position: 528417
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:528512:-1
position: 528512
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:528417-528512:-1:exon

ViviM_p091
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: petL
locus tag: ViviM_p091
note: chloroplast
codon start: 1
product: cyt b6 f complex subunit VI
translation: MPTITSYFGFLLAASTITSVLFIGLSKIRLI
SIO_010081: ViviM_p091
subclass of: SO_0000673
so part of: ViviM_p091
location: complement(528417..528512)
location: region:528417-528512:-1
so has part: feature:528417-528512:-1:exon

YP_002608391.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:528417-528512:-1:exon

ViviM_p092
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: psbE
locus tag: ViviM_p092
note: PSII reaction center subunit V
pseudo: true
so part of: sequence
location: 529827..530063
location: region:529827-530063:1
so has part: feature:529827-530063:1:exon

7498776
type: Gene
SIO_000068: ncbigene

position:529827:1
position: 529827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:529827-530063:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 29760
note: horizontally transferred from chloroplast DNA
so part of: sequence
location: 530053..532770
location: region:530053-532770:1
so has part: feature:530053-532770:1:region

position:530053:1
position: 530053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:532770:1
position: 532770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:530053-532770:1:region

ViviM_p093
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: psbB
locus tag: ViviM_p093
note: PSII 47 kDa protein
pseudo: true
so part of: sequence
location: 530053..530993
location: region:530053-530993:1
so has part: feature:530053-530993:1:exon

7498782
type: Gene
SIO_000068: ncbigene

position:530993:1
position: 530993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:530053-530993:1:exon

ViviM_p094
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: psbT
locus tag: ViviM_p094
so part of: sequence
location: 531185..531385
location: region:531185-531385:1
so has part: feature:531185-531385:1:exon
subclass of: SO_0000010

7498584
type: Gene
SIO_000068: ncbigene

position:531185:1
position: 531185
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:531385:1
position: 531385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:531185-531385:1:exon

ViviM_p094
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: psbT
locus tag: ViviM_p094
note: chloroplast
codon start: 1
product: PSII T-protein
translation: MEALVYTFLLVSTLGIIFFAIFFREPPKEKTKKMKFFFIISISVMSPPIWGGSLLQLVPVFLEWIS
SIO_010081: ViviM_p094
subclass of: SO_0000673
so part of: ViviM_p094
location: 531185..531385
location: region:531185-531385:1
so has part: feature:531185-531385:1:exon

YP_002608392.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:531185-531385:1:exon

ViviM_p095
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: psbN
locus tag: ViviM_p095
so part of: sequence
location: complement(531353..531484)
location: region:531353-531484:-1
so has part: feature:531353-531484:-1:exon
subclass of: SO_0000010

7498595
type: Gene
SIO_000068: ncbigene

position:531353:-1
position: 531353
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:531484:-1
position: 531484
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:531353-531484:-1:exon

ViviM_p095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: psbN
locus tag: ViviM_p095
note: chloroplast
codon start: 1
product: PSII N-protein
translation: METATLVAISISGLLLSLTGYALYTAFGQPSQQLRDPFEEHGD
SIO_010081: ViviM_p095
subclass of: SO_0000673
so part of: ViviM_p095
location: complement(531353..531484)
location: region:531353-531484:-1
so has part: feature:531353-531484:-1:exon

YP_002608393.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:531353-531484:-1:exon

ViviM_p096
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: psbH
locus tag: ViviM_p096
note: PSII 10 kDa phosphoprotein
pseudo: true
so part of: sequence
location: 531592..531817
location: region:531592-531817:1
so has part: feature:531592-531817:1:exon

7498700
type: Gene
SIO_000068: ncbigene

position:531592:1
position: 531592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:531817:1
position: 531817
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:531592-531817:1:exon

ViviM_p097
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: petB
locus tag: ViviM_p097
note: cytochrome b6; exon 2
pseudo: true
so part of: sequence
location: 532709..532770
location: region:532709-532770:1
so has part: feature:532709-532770:1:exon

7498784
type: Gene
SIO_000068: ncbigene

position:532709:1
position: 532709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:532709-532770:1:exon

ViviM_t021
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: tRNA-Cys (GCA)
locus tag: ViviM_t021
so part of: sequence
location: 536660..536730
location: region:536660-536730:1
so has part: feature:536660-536730:1:exon
subclass of: SO_0000663

7498773
type: Gene
SIO_000068: ncbigene

position:536660:1
position: 536660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:536730:1
position: 536730
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:536660-536730:1:exon

ViviM_t021
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 29760
gene: tRNA-Cys (GCA)
locus tag: ViviM_t021
product: tRNA-Cys
note: mitochondrial type
codon recognized: UGC
SIO_010081: ViviM_t021
subclass of: SO_0000673
so part of: ViviM_t021
location: 536660..536730
location: region:536660-536730:1
so has part: feature:536660-536730:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:536660-536730:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 29760
note: horizontally transferred from chloroplast DNA
so part of: sequence
location: 538650..538974
location: region:538650-538974:1
so has part: feature:538650-538974:1:region

position:538650:1
position: 538650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:538974:1
position: 538974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:538650-538974:1:region

ViviM_t022
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: tRNA-Asn (GUU)
locus tag: ViviM_t022
so part of: sequence
location: 538902..538973
location: region:538902-538973:1
so has part: feature:538902-538973:1:exon
subclass of: SO_0000663

7498721
type: Gene
SIO_000068: ncbigene

position:538902:1
position: 538902
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:538973:1
position: 538973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:538902-538973:1:exon

ViviM_t022
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 29760
gene: tRNA-Asn (GUU)
locus tag: ViviM_t022
product: tRNA-Asn
note: chloroplast type
codon recognized: AAC
SIO_010081: ViviM_t022
subclass of: SO_0000673
so part of: ViviM_t022
location: 538902..538973
location: region:538902-538973:1
so has part: feature:538902-538973:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:538902-538973:1:exon

ViviM_t023
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: tRNA-Tyr (GUA)
locus tag: ViviM_t023
so part of: sequence
location: 540051..540133
location: region:540051-540133:1
so has part: feature:540051-540133:1:exon
subclass of: SO_0000663

7498719
type: Gene
SIO_000068: ncbigene

position:540051:1
position: 540051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:540133:1
position: 540133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:540051-540133:1:exon

ViviM_t023
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 29760
gene: tRNA-Tyr (GUA)
locus tag: ViviM_t023
product: tRNA-Tyr
note: mitochondrial type
codon recognized: UAC
SIO_010081: ViviM_t023
subclass of: SO_0000673
so part of: ViviM_t023
location: 540051..540133
location: region:540051-540133:1
so has part: feature:540051-540133:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:540051-540133:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 29760
note: horizontally transferred from chloroplast DNA
so part of: sequence
location: 554939..557430
location: region:554939-557430:1
so has part: feature:554939-557430:1:region

position:554939:1
position: 554939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:557430:1
position: 557430
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:554939-557430:1:region

ViviM_p098
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: atpF
locus tag: ViviM_p098
note: ATPase subunit I
pseudo: true
so part of: sequence
location: 554942..555245
location: region:554942-555245:1
so has part: feature:554942-555245:1:exon

7498739
type: Gene
SIO_000068: ncbigene

position:554942:1
position: 554942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:555245:1
position: 555245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:554942-555245:1:exon

ViviM_p099
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: atpA
locus tag: ViviM_p099
so part of: sequence
location: 555307..556830
location: region:555307-556830:1
so has part: feature:555307-556830:1:exon
subclass of: SO_0000010

7498527
type: Gene
SIO_000068: ncbigene

position:555307:1
position: 555307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:556830:1
position: 556830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:555307-556830:1:exon

ViviM_p099
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: atpA
locus tag: ViviM_p099
note: chloroplast
codon start: 1
product: ATPase alpha subunit
translation: MVTIRADEISNIIRERIEQYNREVKIVNTGTVLQVGDGIARIHGLDEVMAGELVEFEEGTIGIALNLESNNVGVVLMGDGLMIQEGSSVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKASSVAQVVTTFQERGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRKRHTLIIYDDPSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKSSSSLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKSKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSSPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLAELRNYLKTNKPQFQEIISSTKTFTEEAETLLKETIQEQMERFLLQEQA
SIO_010081: ViviM_p099
subclass of: SO_0000673
so part of: ViviM_p099
location: 555307..556830
location: region:555307-556830:1
so has part: feature:555307-556830:1:exon

YP_002608394.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:555307-556830:1:exon

ViviM_t024
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: tRNA-Arg (UCU)
locus tag: ViviM_t024
so part of: sequence
location: complement(557032..557103)
location: region:557032-557103:-1
so has part: feature:557032-557103:-1:exon
subclass of: SO_0000663

7498749
type: Gene
SIO_000068: ncbigene

position:557032:-1
position: 557032
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:557103:-1
position: 557103
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:557032-557103:-1:exon

ViviM_t024
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 29760
gene: tRNA-Arg (UCU)
locus tag: ViviM_t024
product: tRNA-Arg
note: chloroplast type
codon recognized: AGA
SIO_010081: ViviM_t024
subclass of: SO_0000673
so part of: ViviM_t024
location: complement(557032..557103)
location: region:557032-557103:-1
so has part: feature:557032-557103:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:557032-557103:-1:exon

ViviM_t025
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: tRNA-Gly (UCC)
locus tag: ViviM_t025
so part of: sequence
location: complement(557256..557303)
location: region:557256-557303:-1
so has part: feature:557256-557303:-1:exon
subclass of: SO_0000663

7498717
type: Gene
SIO_000068: ncbigene

position:557256:-1
position: 557256
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:557303:-1
position: 557303
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:557256-557303:-1:exon

ViviM_t025
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 29760
gene: tRNA-Gly (UCC)
locus tag: ViviM_t025
product: tRNA-Gly
note: exon2; chloroplast type
codon recognized: GGA
SIO_010081: ViviM_t025
subclass of: SO_0000673
so part of: ViviM_t025
location: complement(557256..557303)
location: region:557256-557303:-1
so has part: feature:557256-557303:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:557256-557303:-1:exon

ViviM_t026
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: tRNA-fMet(CAU)
locus tag: ViviM_t026
so part of: sequence
location: complement(568701..568774)
location: region:568701-568774:-1
so has part: feature:568701-568774:-1:exon
subclass of: SO_0000663

7498725
type: Gene
SIO_000068: ncbigene

position:568701:-1
position: 568701
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:568774:-1
position: 568774
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:568701-568774:-1:exon

ViviM_t026
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 29760
gene: tRNA-fMet(CAU)
locus tag: ViviM_t026
product: tRNA-Met
note: mitochondrial type; transfer RNA-fMet(CAU)
SIO_010081: ViviM_t026
subclass of: SO_0000673
so part of: ViviM_t026
location: complement(568701..568774)
location: region:568701-568774:-1
so has part: feature:568701-568774:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:568701-568774:-1:exon

ViviM_r003
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: 26Srrn
locus tag: ViviM_r003
so part of: sequence
location: complement(569157..572757)
location: region:569157-572757:-1
so has part: feature:569157-572757:-1:exon
subclass of: SO_0000573

7498722
type: Gene
SIO_000068: ncbigene

position:569157:-1
position: 569157
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:572757:-1
position: 572757
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:569157-572757:-1:exon

ViviM_r003
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 29760
gene: 26Srrn
locus tag: ViviM_r003
product: 26S ribosomal RNA
SIO_010081: ViviM_r003
subclass of: SO_0000673
so part of: ViviM_r003
location: complement(569157..572757)
location: region:569157-572757:-1
so has part: feature:569157-572757:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:569157-572757:-1:exon

ViviM_p100
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: atp1
locus tag: ViviM_p100
so part of: sequence
location: complement(582185..583714)
location: region:582185-583714:-1
so has part: feature:582185-583714:-1:exon
subclass of: SO_0000010

7498514
type: Gene
SIO_000068: ncbigene

position:582185:-1
position: 582185
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:583714:-1
position: 583714
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:582185-583714:-1:exon

ViviM_p100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: atp1
locus tag: ViviM_p100
codon start: 1
product: ATPase subunit 1
translation: MEFSPRAAELTTLLESRITNFYTNLKVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDALGVPIDGRGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKLLNSKATSDSETLYCVYVAIGQKRSTVAQLVQILSEANALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGDVFYLHSRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVIPITDGQICSETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQVCGSSKLELAQYREVAALAQFGSDLDAATQALLNRGARLTEVSKQPQYAPLPIEKQILVIYAAVNGFCDRMPLDRISQYERAIPSSIKPEFLQSLLEKGGLTNERKMEPDAFLKESALPYL
SIO_010081: ViviM_p100
subclass of: SO_0000673
so part of: ViviM_p100
location: complement(582185..583714)
location: region:582185-583714:-1
so has part: feature:582185-583714:-1:exon

YP_002608395.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:582185-583714:-1:exon

ViviM_p101
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: rpoC2
locus tag: ViviM_p101
note: RNA polymerase beta' subunit 2
pseudo: true
so part of: sequence
location: complement(584577..584644)
location: region:584577-584644:-1
so has part: feature:584577-584644:-1:exon

7498745
type: Gene
SIO_000068: ncbigene

position:584577:-1
position: 584577
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:584644:-1
position: 584644
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:584577-584644:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 29760
note: horizontally transferred from chloroplast DNA
so part of: sequence
location: 584577..584644
location: region:584577-584644:1
so has part: feature:584577-584644:1:region

position:584577:1
position: 584577
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:584644:1
position: 584644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:584577-584644:1:region

ViviM_p102
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: orf86
locus tag: ViviM_p102
so part of: sequence
location: complement(600611..600871)
location: region:600611-600871:-1
so has part: feature:600611-600871:-1:exon
subclass of: SO_0000010

7498611
type: Gene
SIO_000068: ncbigene

position:600611:-1
position: 600611
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:600871:-1
position: 600871
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:600611-600871:-1:exon

ViviM_p102
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: orf86
locus tag: ViviM_p102
note: similar to orf103e in Nicotiana
codon start: 1
product: orf86
translation: MQRCSSEARVRDCPPHRPEEQWLCCFARLQRDIPKVPTLNRKKEQSTICLTHAPGIPRHRGYNKFFYWIESRGKAYSVRAQLSPPP
SIO_010081: ViviM_p102
subclass of: SO_0000673
so part of: ViviM_p102
location: complement(600611..600871)
location: region:600611-600871:-1
so has part: feature:600611-600871:-1:exon

YP_002608396.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:600611-600871:-1:exon

ViviM_p103
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: atp1
locus tag: ViviM_p103
note: ATPase subunit 1
pseudo: true
so part of: sequence
location: complement(604801..604928)
location: region:604801-604928:-1
so has part: feature:604801-604928:-1:exon

7498770
type: Gene
SIO_000068: ncbigene

position:604801:-1
position: 604801
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:604928:-1
position: 604928
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:604801-604928:-1:exon

ViviM_p104
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: rps19
locus tag: ViviM_p104
so part of: sequence
location: complement(605243..605527)
location: region:605243-605527:-1
so has part: feature:605243-605527:-1:exon
subclass of: SO_0000010

7498518
type: Gene
SIO_000068: ncbigene

position:605243:-1
position: 605243
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:605527:-1
position: 605527
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:605243-605527:-1:exon

ViviM_p104
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: rps19
locus tag: ViviM_p104
codon start: 1
product: ribosomal protein S19
translation: MPRRSIWKGSFVDAFLLRMKKKRDLLLNRKIWSRRSSISPDFVDCSVRIYNGKTPVRCKITEGKVGHKFGEFASTRKRRPSRTNIGPGRKKGKK
SIO_010081: ViviM_p104
subclass of: SO_0000673
so part of: ViviM_p104
location: complement(605243..605527)
location: region:605243-605527:-1
so has part: feature:605243-605527:-1:exon

YP_002608397.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:605243-605527:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 29760
note: horizontally transferred from chloroplast DNA
so part of: sequence
location: 606700..609566
location: region:606700-609566:1
so has part: feature:606700-609566:1:region

position:606700:1
position: 606700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:609566:1
position: 609566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:606700-609566:1:region

ViviM_p105
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: psbD
locus tag: ViviM_p105
note: PSII D2 protein
pseudo: true
so part of: sequence
location: 607481..608542
location: region:607481-608542:1
so has part: feature:607481-608542:1:exon

7498712
type: Gene
SIO_000068: ncbigene

position:607481:1
position: 607481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:608542:1
position: 608542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:607481-608542:1:exon

ViviM_p106
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: psbC
locus tag: ViviM_p106
note: PSII 44 kDa protein
pseudo: true
so part of: sequence
location: 608490..609566
location: region:608490-609566:1
so has part: feature:608490-609566:1:exon

7498781
type: Gene
SIO_000068: ncbigene

position:608490:1
position: 608490
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:608490-609566:1:exon

ViviM_p107
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: nad6
locus tag: ViviM_p107
so part of: sequence
location: complement(622138..622809)
location: region:622138-622809:-1
so has part: feature:622138-622809:-1:exon
subclass of: SO_0000010

7498585
type: Gene
SIO_000068: ncbigene

position:622138:-1
position: 622138
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:622809:-1
position: 622809
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:622138-622809:-1:exon

ViviM_p107
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: nad6
locus tag: ViviM_p107
codon start: 1
product: NADH dehydrogenase subunit 6
translation: MRVLAPALKFHFREGRRTMILSVSSSPALVSGLMVARAKNPVHSVLFPIPVFRNTSGLLLLLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQIAETHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRKTTSLRYTVYAEKVRSWTNLETLGNLLYTYYSVWFLVPSPILLVAMIGAIVLTMHRTTKVKRQDVFRRNAIDSRRTIMRRTTDPLTIY
SIO_010081: ViviM_p107
subclass of: SO_0000673
so part of: ViviM_p107
location: complement(622138..622809)
location: region:622138-622809:-1
so has part: feature:622138-622809:-1:exon

YP_002608398.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:622138-622809:-1:exon

ViviM_p108
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: rps4
locus tag: ViviM_p108
so part of: sequence
location: complement(623390..624478)
location: region:623390-624478:-1
so has part: feature:623390-624478:-1:exon
subclass of: SO_0000010

7498552
type: Gene
SIO_000068: ncbigene

position:623390:-1
position: 623390
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:624478:-1
position: 624478
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:623390-624478:-1:exon

ViviM_p108
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: rps4
locus tag: ViviM_p108
codon start: 1
product: ribosomal protein S4
translation: MWRKRLIQPDLRPTLPALRFKTCRLLPGNVRNRELTIIQRRILRRLRNKKRSIKRKIYPRDNLNSYIQSQTTRKLPLFHGDLPITEMHRGTERNSYILFPLNLETRSDVIPVRLHFCETIPQARQPISHRRVCVNNRMVSITHLKVSHGDIISFQENDARIRGEEIRRSFYIEISVEKIIGKFLDHPVRMWRRTKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSKRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMKRRIKRIELPTHYSEVNHRTPKAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI
SIO_010081: ViviM_p108
subclass of: SO_0000673
so part of: ViviM_p108
location: complement(623390..624478)
location: region:623390-624478:-1
so has part: feature:623390-624478:-1:exon

YP_002608399.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:623390-624478:-1:exon

ViviM_p109
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: sdh3
locus tag: ViviM_p109
note: succinate dehydrogenase subunit 3
pseudo: true
so part of: sequence
location: 638994..639121
location: region:638994-639121:1
so has part: feature:638994-639121:1:exon

7498713
type: Gene
SIO_000068: ncbigene

position:638994:1
position: 638994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:639121:1
position: 639121
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:638994-639121:1:exon

ViviM_t027
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: tRNA-Met (CAU)
locus tag: ViviM_t027
so part of: sequence
location: complement(649719..649791)
location: region:649719-649791:-1
so has part: feature:649719-649791:-1:exon
subclass of: SO_0000663

7498715
type: Gene
SIO_000068: ncbigene

position:649719:-1
position: 649719
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:649791:-1
position: 649791
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:649719-649791:-1:exon

ViviM_t027
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 29760
gene: tRNA-Met (CAU)
locus tag: ViviM_t027
product: tRNA-Met
note: chloroplast type
codon recognized: AUG
SIO_010081: ViviM_t027
subclass of: SO_0000673
so part of: ViviM_t027
location: complement(649719..649791)
location: region:649719-649791:-1
so has part: feature:649719-649791:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:649719-649791:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 29760
note: horizontally transferred from chloroplast DNA
so part of: sequence
location: 649719..649791
location: region:649719-649791:1
so has part: feature:649719-649791:1:region

position:649719:1
position: 649719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:649791:1
position: 649791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:649719-649791:1:region

ViviM_p110
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: rpl2
locus tag: ViviM_p110
note: ribosomal protein L2
pseudo: true
so part of: sequence
location: 655445..655506
location: region:655445-655506:1
so has part: feature:655445-655506:1:exon

7498732
type: Gene
SIO_000068: ncbigene

position:655445:1
position: 655445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:655506:1
position: 655506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:655445-655506:1:exon

ViviM_p110
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 29760
gene: rpl2
locus tag: ViviM_p110
note: horizontally transferred from chloroplast DNA
pseudo: true
SIO_010081: ViviM_p110
subclass of: SO_0000673
so part of: ViviM_p110
location: 655445..655506
location: region:655445-655506:1
so has part: feature:655445-655506:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:655445-655506:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 29760
note: horizontally transferred from chloroplast DNA
so part of: sequence
location: 668317..675157
location: region:668317-675157:1
so has part: feature:668317-675157:1:region

position:668317:1
position: 668317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:675157:1
position: 675157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:668317-675157:1:region

ViviM_p111
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: rps19
locus tag: ViviM_p111
so part of: sequence
location: 668332..668610
location: region:668332-668610:1
so has part: feature:668332-668610:1:exon
subclass of: SO_0000010

7498602
type: Gene
SIO_000068: ncbigene

position:668332:1
position: 668332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:668610:1
position: 668610
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:668332-668610:1:exon

ViviM_p111
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: rps19
locus tag: ViviM_p111
note: chloroplast
codon start: 1
transl except: (pos:668332..668334,aa:Met)
product: ribosomal protein S19
translation: MTRSLKKNPFIAKHLLRKIAMLNTTWEKEIIVTWSRTSTIIPTMIGHTIAVHNGKEHFPIYITDRMVGHKLGEFSSTLNFRGHAKNDNRSRR
SIO_010081: ViviM_p111
subclass of: SO_0000673
so part of: ViviM_p111
location: 668332..668610
location: region:668332-668610:1
so has part: feature:668332-668610:1:exon

YP_002608400.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:668332-668610:1:exon

ViviM_p112
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: rpl22
locus tag: ViviM_p112
note: ribosomal protein L22
pseudo: true
so part of: sequence
location: 668720..669206
location: region:668720-669206:1
so has part: feature:668720-669206:1:exon

7498711
type: Gene
SIO_000068: ncbigene

position:668720:1
position: 668720
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:669206:1
position: 669206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:668720-669206:1:exon

ViviM_p113
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: rps3
locus tag: ViviM_p113
note: ribosomal protein S3
pseudo: true
so part of: sequence
location: 669191..669861
location: region:669191-669861:1
so has part: feature:669191-669861:1:exon

7498704
type: Gene
SIO_000068: ncbigene

position:669191:1
position: 669191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:669861:1
position: 669861
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:669191-669861:1:exon

ViviM_p114
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: rpl16
locus tag: ViviM_p114
so part of: sequence
location: 670032..671522
location: region:670032-671522:1
so has part: feature:670032-671522:1:exon
subclass of: SO_0000010

7498629
type: Gene
SIO_000068: ncbigene

position:670032:1
position: 670032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:671522:1
position: 671522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:670032-671522:1:exon

ViviM_p114
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: rpl16
locus tag: ViviM_p114
note: chloroplast
codon start: 1
product: ribosomal protein L16
translation: MLSPKRTRFRKQHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAASKMPIRTQFIISG
SIO_010081: ViviM_p114
subclass of: SO_0000673
so part of: ViviM_p114
location: join(670032..670040,671124..671522)
location: region:670032-671522:1
so has part: feature:670032-670040:1:exon
so has part: feature:671124-671522:1:exon

YP_002608401.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:670032-670040:1:exon

position:670040:1
position: 670040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:671124-671522:1:exon

position:671124:1
position: 671124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ViviM_p115
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: rpl14
locus tag: ViviM_p115
so part of: sequence
location: 671649..672017
location: region:671649-672017:1
so has part: feature:671649-672017:1:exon
subclass of: SO_0000010

7498600
type: Gene
SIO_000068: ncbigene

position:671649:1
position: 671649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:672017:1
position: 672017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:671649-672017:1:exon

ViviM_p115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: rpl14
locus tag: ViviM_p115
note: chloroplast
codon start: 1
product: ribosomal protein L14
translation: MIQPQTHLNVADNSGARELMCIRIIGTSNRRYAHIGDVIVAVIKEVVPNMPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIVRELRQFHFTKIVSLAPEVL
SIO_010081: ViviM_p115
subclass of: SO_0000673
so part of: ViviM_p115
location: 671649..672017
location: region:671649-672017:1
so has part: feature:671649-672017:1:exon

YP_002608402.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:671649-672017:1:exon

ViviM_p116
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: rps8
locus tag: ViviM_p116
note: ribosomal protein S8
pseudo: true
so part of: sequence
location: 672187..672591
location: region:672187-672591:1
so has part: feature:672187-672591:1:exon

7498702
type: Gene
SIO_000068: ncbigene

position:672187:1
position: 672187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:672591:1
position: 672591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:672187-672591:1:exon

ViviM_p117
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: infA
locus tag: ViviM_p117
so part of: sequence
location: 672713..672946
location: region:672713-672946:1
so has part: feature:672713-672946:1:exon
subclass of: SO_0000010

7498632
type: Gene
SIO_000068: ncbigene

position:672713:1
position: 672713
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:672946:1
position: 672946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:672713-672946:1:exon

ViviM_p117
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: infA
locus tag: ViviM_p117
note: chloroplast
codon start: 1
product: initiation factor 1
translation: MKEQKWIHEGLITESLPNGMFRVRLDNENMILGYVSGRIRRSFIRILPGDRVKIEVSRYDSTKGRIIYRIRNKDSNN
SIO_010081: ViviM_p117
subclass of: SO_0000673
so part of: ViviM_p117
location: 672713..672946
location: region:672713-672946:1
so has part: feature:672713-672946:1:exon

YP_002608403.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:672713-672946:1:exon

ViviM_p118
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: rpl36
locus tag: ViviM_p118
so part of: sequence
location: 673071..673184
location: region:673071-673184:1
so has part: feature:673071-673184:1:exon
subclass of: SO_0000010

7498541
type: Gene
SIO_000068: ncbigene

position:673071:1
position: 673071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:673184:1
position: 673184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:673071-673184:1:exon

ViviM_p118
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: rpl36
locus tag: ViviM_p118
note: chloroplast
codon start: 1
product: ribosomal protein L36
translation: MKIRASVRKICEKCRLIRRRGRIIVICPNPRHKQRQG
SIO_010081: ViviM_p118
subclass of: SO_0000673
so part of: ViviM_p118
location: 673071..673184
location: region:673071-673184:1
so has part: feature:673071-673184:1:exon

YP_002608404.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:673071-673184:1:exon

ViviM_p119
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: rps11
locus tag: ViviM_p119
so part of: sequence
location: 673301..673717
location: region:673301-673717:1
so has part: feature:673301-673717:1:exon
subclass of: SO_0000010

7498608
type: Gene
SIO_000068: ncbigene

position:673301:1
position: 673301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:673717:1
position: 673717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:673301-673717:1:exon

ViviM_p119
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: rps11
locus tag: ViviM_p119
note: chloroplast
codon start: 1
product: ribosomal protein S11
translation: MAKPIPRIGSRRNGRIGSRKSARRIPKGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTCGFRGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGCRPPKKRRV
SIO_010081: ViviM_p119
subclass of: SO_0000673
so part of: ViviM_p119
location: 673301..673717
location: region:673301-673717:1
so has part: feature:673301-673717:1:exon

YP_002608405.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:673301-673717:1:exon

ViviM_p120
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: rpoAp
locus tag: ViviM_p120
note: RNA polymerase alpha subunit
pseudo: true
so part of: sequence
location: 673798..674811
location: region:673798-674811:1
so has part: feature:673798-674811:1:exon

7498708
type: Gene
SIO_000068: ncbigene

position:673798:1
position: 673798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:674811:1
position: 674811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:673798-674811:1:exon

ViviM_p121
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: petD
locus tag: ViviM_p121
note: exon 2
pseudo: true
so part of: sequence
location: complement(675008..675157)
location: region:675008-675157:-1
so has part: feature:675008-675157:-1:exon

7498706
type: Gene
SIO_000068: ncbigene

position:675008:-1
position: 675008
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:675157:-1
position: 675157
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:675008-675157:-1:exon

ViviM_p122
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: ndhD
locus tag: ViviM_p122
note: NADH dehydrogenase subunit 4
pseudo: true
so part of: sequence
location: 693978..694236
location: region:693978-694236:1
so has part: feature:693978-694236:1:exon

7498774
type: Gene
SIO_000068: ncbigene

position:693978:1
position: 693978
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:694236:1
position: 694236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:693978-694236:1:exon

ViviM_p122
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 29760
gene: ndhD
locus tag: ViviM_p122
note: horizontally transferred from chloroplast DNA
pseudo: true
SIO_010081: ViviM_p122
subclass of: SO_0000673
so part of: ViviM_p122
location: 693978..694236
location: region:693978-694236:1
so has part: feature:693978-694236:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:693978-694236:1:exon

ViviM_p123
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: cox2
locus tag: ViviM_p123
so part of: sequence
location: complement(694649..699042)
location: region:694649-699042:-1
so has part: feature:694649-699042:-1:exon
subclass of: SO_0000010

7498556
type: Gene
SIO_000068: ncbigene

position:694649:-1
position: 694649
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:699042:-1
position: 699042
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:694649-699042:-1:exon

ViviM_p123
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: cox2
locus tag: ViviM_p123
codon start: 1
product: cox2
translation: MIVLEWLFLTIAPCDAAEPWQLGSQDAATPIMQGVMDLHHDIFFFLILILVFVSRILVRALWHFHYKKNPIPQRIVHGTTIEILRTIFPSIIPMFIAIPSFVLLYSMDEVVVDPAITIKAIGHQWYRTYEYSDYNSSDEESLTFDSYTIPEDDPELGQSRLLEVDNRVVVPAKTNLRIIVTPADVPHSWAVPSSGVKCDAVPGRSNQTSISVQREGVYYGQCSEIRGTNHASIVVEAVPRKDYGSRVSNQLIPQTNQTGEA
SIO_010081: ViviM_p123
subclass of: SO_0000673
so part of: ViviM_p123
location: complement(join(694649..694740,696374..696685,698661..699042))
location: region:694649-699042:-1
so has part: feature:698661-699042:-1:exon
so has part: feature:696374-696685:-1:exon
so has part: feature:694649-694740:-1:exon

YP_002608406.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:698661-699042:-1:exon

position:698661:-1
position: 698661
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:696374-696685:-1:exon

position:696374:-1
position: 696374
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:696685:-1
position: 696685
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:694649-694740:-1:exon

position:694740:-1
position: 694740
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 29760
note: horizontally transferred from chloroplast DNA
so part of: sequence
location: 708001..708174
location: region:708001-708174:1
so has part: feature:708001-708174:1:region

position:708001:1
position: 708001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:708174:1
position: 708174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:708001-708174:1:region

ViviM_p124
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: atp9
locus tag: ViviM_p124
so part of: sequence
location: 712435..712659
location: region:712435-712659:1
so has part: feature:712435-712659:1:exon
subclass of: SO_0000010

7498539
type: Gene
SIO_000068: ncbigene

position:712435:1
position: 712435
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:712659:1
position: 712659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:712435-712659:1:exon

ViviM_p124
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: atp9
locus tag: ViviM_p124
codon start: 1
product: ATPase subunit 9
translation: MLEGAKSMGAGAATIASAGAAIGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPMMAFLISSVF
SIO_010081: ViviM_p124
subclass of: SO_0000673
so part of: ViviM_p124
location: 712435..712659
location: region:712435-712659:1
so has part: feature:712435-712659:1:exon

YP_002608407.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:712435-712659:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 29760
note: horizontally transferred from chloroplast DNA
so part of: sequence
location: 748716..752286
location: region:748716-752286:1
so has part: feature:748716-752286:1:region

position:748716:1
position: 748716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:752286:1
position: 752286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:748716-752286:1:region

ViviM_p125
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: psbM
locus tag: ViviM_p125
so part of: sequence
location: complement(748888..748992)
location: region:748888-748992:-1
so has part: feature:748888-748992:-1:exon
subclass of: SO_0000010

7498522
type: Gene
SIO_000068: ncbigene

position:748888:-1
position: 748888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:748992:-1
position: 748992
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:748888-748992:-1:exon

ViviM_p125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: psbM
locus tag: ViviM_p125
note: chloroplast
codon start: 1
product: PSII M protein
translation: MEVNILAFIATALFILVPTAFLFIIYVKTVSQNN
SIO_010081: ViviM_p125
subclass of: SO_0000673
so part of: ViviM_p125
location: complement(748888..748992)
location: region:748888-748992:-1
so has part: feature:748888-748992:-1:exon

YP_002608408.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:748888-748992:-1:exon

ViviM_t028
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: tRNA-Asp (GUC)
locus tag: ViviM_t028
so part of: sequence
location: complement(750129..750202)
location: region:750129-750202:-1
so has part: feature:750129-750202:-1:exon
subclass of: SO_0000663

7498699
type: Gene
SIO_000068: ncbigene

position:750129:-1
position: 750129
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:750202:-1
position: 750202
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:750129-750202:-1:exon

ViviM_t028
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 29760
gene: tRNA-Asp (GUC)
locus tag: ViviM_t028
product: tRNA-Asp
note: chloroplast type
codon recognized: GAC
SIO_010081: ViviM_t028
subclass of: SO_0000673
so part of: ViviM_t028
location: complement(750129..750202)
location: region:750129-750202:-1
so has part: feature:750129-750202:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:750129-750202:-1:exon

ViviM_t029
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: tRNA-Tyr (GUA)
locus tag: ViviM_t029
so part of: sequence
location: complement(750626..750709)
location: region:750626-750709:-1
so has part: feature:750626-750709:-1:exon
subclass of: SO_0000663

7498720
type: Gene
SIO_000068: ncbigene

position:750626:-1
position: 750626
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:750709:-1
position: 750709
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:750626-750709:-1:exon

ViviM_t029
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 29760
gene: tRNA-Tyr (GUA)
locus tag: ViviM_t029
product: tRNA-Tyr
note: chloroplast type
codon recognized: UAC
SIO_010081: ViviM_t029
subclass of: SO_0000673
so part of: ViviM_t029
location: complement(750626..750709)
location: region:750626-750709:-1
so has part: feature:750626-750709:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:750626-750709:-1:exon

ViviM_t030
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: tRNA-Glu (UUC)
locus tag: ViviM_t030
so part of: sequence
location: complement(750773..750841)
location: region:750773-750841:-1
so has part: feature:750773-750841:-1:exon
subclass of: SO_0000663

7498740
type: Gene
SIO_000068: ncbigene

position:750773:-1
position: 750773
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:750841:-1
position: 750841
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:750773-750841:-1:exon

ViviM_t030
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 29760
gene: tRNA-Glu (UUC)
locus tag: ViviM_t030
product: tRNA-Glu
note: chloroplast type
pseudo: true
codon recognized: GAA
SIO_010081: ViviM_t030
subclass of: SO_0000673
so part of: ViviM_t030
location: complement(750773..750841)
location: region:750773-750841:-1
so has part: feature:750773-750841:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:750773-750841:-1:exon

ViviM_t031
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: tRNA-Thr (GGU)
locus tag: ViviM_t031
so part of: sequence
location: 751721..751792
location: region:751721-751792:1
so has part: feature:751721-751792:1:exon
subclass of: SO_0000663

7498724
type: Gene
SIO_000068: ncbigene

position:751721:1
position: 751721
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:751792:1
position: 751792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:751721-751792:1:exon

ViviM_t031
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 29760
gene: tRNA-Thr (GGU)
locus tag: ViviM_t031
product: tRNA-Thr
note: chloroplast type
codon recognized: ACC
SIO_010081: ViviM_t031
subclass of: SO_0000673
so part of: ViviM_t031
location: 751721..751792
location: region:751721-751792:1
so has part: feature:751721-751792:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:751721-751792:1:exon

ViviM_p126
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: nad4
locus tag: ViviM_p126
so part of: sequence
location: 755164..764550
location: region:755164-764550:1
so has part: feature:755164-764550:1:exon
subclass of: SO_0000010

7498663
type: Gene
SIO_000068: ncbigene

position:755164:1
position: 755164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:764550:1
position: 764550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:755164-764550:1:exon

ViviM_p126
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: nad4
locus tag: ViviM_p126
codon start: 1
product: NADH dehydrogenase subunit 4
translation: MLEHFCECYSDLSGPIPCPVLGSITPLFIPNSRIRPIRLIGLCASLITFLYPPVPRIQFDPSTATSQFVESLRWLPYENINLYLGIDGISLFFVILTTFLIPICISVGWSGMRSYGKEYITASLIREFLMIAVFRMLDPLLFYVLPESVPIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTTDSQISLTTEFSERRQIFLWIASFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGIPLKLGTHGFLRFSIPMFPEATLRSTPFIYTPSAIAIIYTSSTTSRQIDLKKIIAYSPVAHMNLVTIGMFSPNIQGIGGSILPMSSHGPVPSALFLCVGVLYDRHKTRLARYYGGSVSTMPNLPTISFSSTLANMSSPGTSSFIGEFPISVGAFQRNSLVATLAALGMILGAAYSLWLYNRAVSGNLKPDFLHKFSDPNGREVSIFIPFLVGVVRMGVHPKVFPDRMHTSVSNLVQHGKFN
SIO_010081: ViviM_p126
subclass of: SO_0000673
so part of: ViviM_p126
location: join(755164..755624,757059..757573,761995..762417,764462..764550)
location: region:755164-764550:1
so has part: feature:755164-755624:1:exon
so has part: feature:757059-757573:1:exon
so has part: feature:761995-762417:1:exon
so has part: feature:764462-764550:1:exon

YP_002608409.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:755164-755624:1:exon

position:755624:1
position: 755624
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:757059-757573:1:exon

position:757059:1
position: 757059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:757573:1
position: 757573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:761995-762417:1:exon

position:761995:1
position: 761995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:762417:1
position: 762417
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:764462-764550:1:exon

position:764462:1
position: 764462
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ViviM_p127
type: Gene
subclass of: SO_0000704
RO_0002162: 29760
gene: orf145
locus tag: ViviM_p127
so part of: sequence
location: complement(772602..773036)
location: region:772602-773036:-1
so has part: feature:772602-773036:-1:exon
subclass of: SO_0000010

7498548
type: Gene
SIO_000068: ncbigene

position:772602:-1
position: 772602
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:773036:-1
position: 773036
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:772602-773036:-1:exon

ViviM_p127
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29760
gene: orf145
locus tag: ViviM_p127
note: similar to orf147 in Nicotiana tabacum, orf122b and orf129b in Beta vulgaris, orf140-b in maize, orf101b in Brassica napus
codon start: 1
product: orf145
translation: MGLTLYLGMKRGNIACHKSEARCLTPYCERDASRAGLLEMRPFGEAKSISGHQTLQLMRRPYGVKGSVYVVTLPAFQRCLEDGPDAAERRPGSGFPTGRGTGDGHLEAHHDLQARPARPGKATRLGVRGSIVPAAARTSYSSFF
SIO_010081: ViviM_p127
subclass of: SO_0000673
so part of: ViviM_p127
location: complement(772602..773036)
location: region:772602-773036:-1
so has part: feature:772602-773036:-1:exon

YP_002608410.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:772602-773036:-1:exon