Azospirillum argentinense strain Az39 plasmid AbAZ39_p5, complete sequence.
Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Azospirillaceae; Azospirillum.
Complete Genome Sequence of the Model Rhizosphere Strain Azospirillum brasilense Az39, Successfully Applied in Agriculture
Submitted (12-MAY-2014) Genomics and Bioinformatics, INDEAR, Ocampo 210 bis, Predio CCT, Rosario, Santa Fe 2000, Argentina
REFSEQ INFORMATION: The reference sequence is identical to\nCP007798.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Assembly-Data-START##\nAssembly Method :: Newbler v. 2.8\nCoverage :: 21\nSequencing Technology :: 454\n##Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 08/16/2022 00:25:15\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 6,746\nCDSs (total) :: 6,629\nGenes (coding) :: 6,484\nCDSs (with protein) :: 6,484\nGenes (RNA) :: 117\nrRNAs :: 8, 9, 9 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 9, 9 (5S, 16S, 23S)\ntRNAs :: 87\nncRNAs :: 4\nPseudo Genes (total) :: 145\nCDSs (without protein) :: 145\nPseudo Genes (ambiguous residues) :: 0 of 145\nPseudo Genes (frameshifted) :: 34 of 145\nPseudo Genes (incomplete) :: 126 of 145\nPseudo Genes (internal stop) :: 8 of 145\nPseudo Genes (multiple problems) :: 20 of 145\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Azospirillum argentinense
COORDINATES: similar to AA sequence:RefSeq:WP_012978551.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019462018.1
GO:0003978 - UDP-glucose 4-epimerase activity [Evidence IEA]
GO:0006012 - galactose metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012573.2
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: similar to AA sequence:RefSeq:WP_014200290.1
GO:0008168 - methyltransferase activity [Evidence IEA]
methyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014200289.1
COORDINATES: similar to AA sequence:RefSeq:WP_014200288.1
COORDINATES: similar to AA sequence:RefSeq:WP_011630071.1
COORDINATES: similar to AA sequence:RefSeq:WP_017527763.1
COORDINATES: similar to AA sequence:RefSeq:WP_014190027.1
COORDINATES: similar to AA sequence:RefSeq:WP_014190026.1
GO:0008830 - dTDP-4-dehydrorhamnose 3,5-epimerase activity [Evidence IEA]
GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009764853.1
GO:0008460 - dTDP-glucose 4,6-dehydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012978713.1
GO:0008831 - dTDP-4-dehydrorhamnose reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008943772.1
GO:0008879 - glucose-1-phosphate thymidylyltransferase activity [Evidence IEA]
glucose-1-phosphate thymidylyltransferase RfbA
COORDINATES: similar to AA sequence:RefSeq:WP_011351155.1
GO:0008761 - UDP-N-acetylglucosamine 2-epimerase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)
COORDINATES: protein motif:HMM:NF024967.2
COORDINATES: similar to AA sequence:RefSeq:WP_014190028.1
COORDINATES: similar to AA sequence:RefSeq:WP_012452277.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012976702.1
IS21-like element ISAzs30 family helper ATPase IstB
COORDINATES: similar to AA sequence:RefSeq:WP_012976703.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014199075.1
COORDINATES: similar to AA sequence:RefSeq:WP_014199074.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: similar to AA sequence:RefSeq:WP_002730641.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_011077905.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_009408487.1
COORDINATES: protein motif:HMM:NF024751.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611121.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012976683.1
COORDINATES: similar to AA sequence:RefSeq:WP_012468875.1
COORDINATES: similar to AA sequence:RefSeq:WP_012978596.1
COORDINATES: similar to AA sequence:RefSeq:WP_011383234.1
B12-binding domain-containing radical SAM protein
COORDINATES: similar to AA sequence:RefSeq:WP_016483013.1
COORDINATES: protein motif:HMM:NF014798.2
COORDINATES: protein motif:HMM:NF015983.2
GO:0046872 - metal ion binding [Evidence IEA]
Presence of a B(12) (cobalamin)-binding domain implies dependence on cobalamin itself, in one of its several forms, or in some unusual lineages, dependence on a cobalamin-like analog; Derived by automated computational analysis using gene prediction method: Protein Homology.
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611133.1
COORDINATES: similar to AA sequence:RefSeq:WP_004119987.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012975995.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611562.1
GO:0015074 - DNA integration [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014189887.1
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_008945836.1
crotonobetainyl-CoA--carnitine CoA-transferase
COORDINATES: protein motif:HMM:NF025072.2
COORDINATES: protein motif:HMM:NF024824.2
COORDINATES: similar to AA sequence:RefSeq:WP_014198268.1
COORDINATES: protein motif:HMM:NF013088.2
GO:0016021 - integral component of membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019459708.1
COORDINATES: similar to AA sequence:RefSeq:WP_011035858.1
COORDINATES: similar to AA sequence:RefSeq:WP_014506562.1
COORDINATES: similar to AA sequence:RefSeq:WP_014200336.1
COORDINATES: similar to AA sequence:RefSeq:WP_014200294.1
bifunctional class I SAM-dependent methyltransferase/glycosyltransferase family 2 protein
COORDINATES: similar to AA sequence:RefSeq:WP_015667247.1
COORDINATES: similar to AA sequence:RefSeq:WP_014200316.1
molybdenum storage protein subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_014200317.1
COORDINATES: similar to AA sequence:RefSeq:WP_014200318.1
COORDINATES: similar to AA sequence:RefSeq:WP_014200319.1
COORDINATES: similar to AA sequence:RefSeq:WP_014200320.1
COORDINATES: similar to AA sequence:RefSeq:WP_014246918.1
tripartite tricarboxylate transporter TctB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009238747.1
tripartite tricarboxylate transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_014246799.1
GO:0047443 - 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity [Evidence IEA]
4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_014200325.1
UDP-N-acetylglucosamine 4,6-dehydratase (inverting)
COORDINATES: similar to AA sequence:RefSeq:WP_014200326.1
GO:0003824 - catalytic activity [Evidence IEA]
UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase
COORDINATES: similar to AA sequence:RefSeq:WP_012978558.1
COORDINATES: similar to AA sequence:RefSeq:WP_014200328.1
UDP-glucose/GDP-mannose dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014200329.1
COORDINATES: similar to AA sequence:RefSeq:WP_014200330.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_014241991.1
COORDINATES: similar to AA sequence:RefSeq:WP_014200314.1
right-handed parallel beta-helix repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009522445.1
COORDINATES: protein motif:HMM:NF025611.2
COORDINATES: similar to AA sequence:RefSeq:WP_014200271.1
peptidase domain-containing ABC transporter
COORDINATES: similar to AA sequence:RefSeq:WP_014200270.1
HlyD family type I secretion periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014200269.1
COORDINATES: similar to AA sequence:RefSeq:WP_011331448.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF024831.2
COORDINATES: protein motif:HMM:NF012744.2
COORDINATES: similar to AA sequence:RefSeq:WP_014200272.1
COORDINATES: protein motif:HMM:NF012630.2
GO:0031012 - extracellular matrix [Evidence IEA]
GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF020137.2
GO:0005615 - extracellular space [Evidence IEA]
GO:0005509 - calcium ion binding [Evidence IEA]
M10 family metallopeptidase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF021436.2
COORDINATES: similar to AA sequence:RefSeq:WP_007090494.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO:0003979 - UDP-glucose 6-dehydrogenase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011086432.1
COORDINATES: similar to AA sequence:RefSeq:WP_011511221.1
COORDINATES: protein motif:HMM:NF016464.2
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014200263.1
COORDINATES: similar to AA sequence:RefSeq:WP_019645720.1
COORDINATES: similar to AA sequence:RefSeq:WP_014200348.1
COORDINATES: protein motif:HMM:NF024880.2
COORDINATES: protein motif:HMM:NF012745.2
COORDINATES: similar to AA sequence:RefSeq:WP_014200338.1
COORDINATES: similar to AA sequence:RefSeq:WP_012569143.1
GO:0008446 - GDP-mannose 4,6-dehydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012978720.1
GO:0004476 - mannose-6-phosphate isomerase activity [Evidence IEA]; GO:0008905 - mannose-phosphate guanylyltransferase activity [Evidence IEA]
mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_012978661.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
GO:0006790 - sulfur compound metabolic process [Evidence IEA]
sulfate adenylyltransferase subunit CysN
COORDINATES: similar to AA sequence:RefSeq:WP_009542536.1
GO:0004781 - sulfate adenylyltransferase (ATP) activity [Evidence IEA]
GO:0019419 - sulfate reduction [Evidence IEA]
sulfate adenylyltransferase subunit CysD