Micromonas commoda chromosome 17, complete sequence.
Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas.
Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas
Submitted (22-JUN-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (23-DEC-2008) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CP001335.\nURL -- http://www.jgi.doe.gov/MicromonasRCC299\nJGI Project ID: 4000189\nOrganism available from the Center for Culture of Marine\nPhytoplankton (CCMP) and the Roscoff Culture collection (RCC)\nContacts: Alexandra Z. Worden (azworden@mbari.org)\n Igor Grigoriev (IVGrigoriev@lbl.gov)\nAnnotation done by the Micromonas genome consortium as identified\nin the authorship as listed as reference 1 above.\nThis organism was isolated from South Pacific surface waters in\n1998 by S.Boulben. This strain was rendered clonal and axenic in\nthe Worden Lab through plating and a series of antibiotic\ntreatments. Subsequently, the axenic strain was deposited at the\nCCMP (CCMP2709) and RCC (RCC827). RCC299 is also referred to as\nstrain NOUM17.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. We welcome collaborative interaction on the project.\n(http://www.genome.gov/page.cfm?pageID=10506376).\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##
According to Expasy contains a IMP dehydrogenase / GMP reductase domain, involved in biosynthesis of guanosine nucleotide; IMP dehydrogenase/GMP reductase, predicted
contains a U-box domain, related to the Ring finger, but lacks the zinc binding residues; u-box domain containing protein, predicted
udp-n-acetylglucosamine 2-epimerase/CMP-N-acetylneuraminic acid synthetase
phosphate:phosphoenolpyruvate translocator
distantly related to b-glycosyltransferase family; expressed
expressed; putative uncharacterized protein
has partial DUF874, helicobacter pylori protein of unknown function (DUF874). This family consists of several hypothetical proteins specific to Helicobacter pylori. The function of this family is unknown; hypothetical protein
expressed; weak similarity to methyltransferase; hypothetical protein
Has Paired_2/PAX domain.The paired domain is a 126 amino acid DNA-binding domain, which is found in eukaryotic transcription regulatory proteins involved in embryogenesis
Has CN_hydrolase and NAD_synthase domains; NAD synthaseis involved in the de novo synthesis of NAD and is induced by stress factors such as heat shock and glucose limitation
weak similarity to plant glycosyltransferase; expressed; putative uncharacterized protein
semi-conserved uncharacterized protein cupA37
dtdp-6-deoxy-l-hexose 3-o-methyltransferase
Putative protein with hydroxyproline-rich glycoprotein (HRGP) motifs
Hits Glycosyltransferase family 25 (LPS biosynthesis protein). This is a family of glycosyltransferases involved in lipopolysaccharide (LPS) biosynthesis
prokaryotic methyltransferase-like protein