Micromonas commoda chromosome 16, complete sequence.
Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas.
Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas
Submitted (22-JUN-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (23-DEC-2008) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CP001334.\nURL -- http://www.jgi.doe.gov/MicromonasRCC299\nJGI Project ID: 4000189\nOrganism available from the Center for Culture of Marine\nPhytoplankton (CCMP) and the Roscoff Culture collection (RCC)\nContacts: Alexandra Z. Worden (azworden@mbari.org)\n Igor Grigoriev (IVGrigoriev@lbl.gov)\nAnnotation done by the Micromonas genome consortium as identified\nin the authorship as listed as reference 1 above.\nThis organism was isolated from South Pacific surface waters in\n1998 by S.Boulben. This strain was rendered clonal and axenic in\nthe Worden Lab through plating and a series of antibiotic\ntreatments. Subsequently, the axenic strain was deposited at the\nCCMP (CCMP2709) and RCC (RCC827). RCC299 is also referred to as\nstrain NOUM17.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. We welcome collaborative interaction on the project.\n(http://www.genome.gov/page.cfm?pageID=10506376).\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##
Has NAD-kinase, DSPc (Dual specificity phosphatase catalytic), Tensin type C2 domain hits.
hits G-patch domain CUP E002; putative conserved uncharacterized protein
Hits pfam domains WD G-beta repeat and NUC153; conserved uncharacterized protein cup E004
Contains two Myb-type HTH DNA-binding domains
Cyclin dependant kinase B with a PSTALRE cycling domain
the succinate dehydrogenase protein complex is a 4 subunits complex that catalyzes the reaction: succinate + ubiquinone = fumarate + ubiquinol; Mitoprot predicts a 17 aa mTP
glutaredoxin DUF547 domain-containing protein
Aminoacyl-tRNA synthetases[1] are a group of enzymes which activate amino acids and transfer them to specific tRNA molecules as the first step in protein biosynthesis. This protein is putatively class II:
preprotein translocase Sec61 gamma subunit
monovalent Cation:Proton antiporter-2 family
Histone acetyltransferase in the GNAT/MYST superfamily; predicted homolog of yeast ELP3. ChromDB ID: HAG20103
Predicted SET domain containing protein. ChromDB ID: SDG20119
Ribosomal L37ae protein family. This ribosomal protein is found in archaebacteria and eukaryotes. It contains four conserved cysteine residues that may bind to zinc. expressed
Encodes a protein with an AP2-like and an ANT-like ERF domains
amino acid-polyamine-organocation family
Acetate:CoA ligase(AMP-forming), an enzyme that catalyzes the formation of acetyl-CoA from acetate and CoA.
Hits Pfam domain ALG6, ALG8 glycosyltransferase family
candidate Dol-P-sugar: a-glycosyltransferase
Putative cyclin H involved in the control of the cell division cycle
molybdopterin synthase, small subunit CNX7
Part of an enzyme involved in molybdopterin synthesis, the large subunit is on chromosome 10.
This enzyme catalyzes the reversible conversion between glycine and serine. Coupled with the glycine cleavage system it is also part of the photorespiratory pathway. Multicopy.
Encodes a protein with hydroxyproline-rich glycoprotein (HRGP) motifs
magnesium-chelatase subunit chli-like protein chloroplast precursor
Encodes a SWAP domain-containing protein with hydroxyproline-rich glycoprotein (HRGP) motifs
Predicted chromatin remodeling protein similar to chromodomain-members of the SNF2 superfamily of ATP dependent helicases. ChromDB ID: CHR20110; Snf2, Ris1, Rad26 superclasses
Encodes a RWP-RK family transcription factor.
microtubule-associated protein (MAP1), putatively involved in autophagy
Predicted histone methyltransferase. ChromDB ID: SDG20120
Encodes a RWP_RK transcription factor involved in nitrogen-related responses with a C-terminal Phox/Bem1 domain (IPR000270). NLP2
This model has high homology to Chlamy's characterized TOR gene; it contains FAT, PI3_4_ and FATC domains; Phosphatidylinositol kinase (PIK)-related kinases participate in meiotic and V(D)J recombination, chromosome maintenance and repair, cell cycle progression, and cell cycle checkpoints, and their dysfunction can result in a range of diseases, including immunodeficiency, neurological disorder and cancer. The catalytic kinase domain is highly homologuous to that of phosphatidylinositol 3- and 4-kinases. Nevertheless, members of the PIK-related family appear functionally distinct, as none of them has been shown to phosphorylate lipids, such as phosphatidylinositol
Peroxisomal carrier protein homolog (adenine nucleotide)
cytochrome b6/f complex iron-sulfur subunit, chloroplast precursor
Rieske iron-sulfur protein of cytochrome b6f Target and ChloroP predict 36aa cTP
Predicted member of the JmjN_JmjC protein family. ChromDB ID: JMJ20108
small conductance mechanosensitive ion channel family
small-conductance mechanosensitive ion channel