Micromonas commoda chromosome 15, complete sequence.
Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas.
Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas
Submitted (22-JUN-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (23-DEC-2008) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CP001333.\nURL -- http://www.jgi.doe.gov/MicromonasRCC299\nJGI Project ID: 4000189\nOrganism available from the Center for Culture of Marine\nPhytoplankton (CCMP) and the Roscoff Culture collection (RCC)\nContacts: Alexandra Z. Worden (azworden@mbari.org)\n Igor Grigoriev (IVGrigoriev@lbl.gov)\nAnnotation done by the Micromonas genome consortium as identified\nin the authorship as listed as reference 1 above.\nThis organism was isolated from South Pacific surface waters in\n1998 by S.Boulben. This strain was rendered clonal and axenic in\nthe Worden Lab through plating and a series of antibiotic\ntreatments. Subsequently, the axenic strain was deposited at the\nCCMP (CCMP2709) and RCC (RCC827). RCC299 is also referred to as\nstrain NOUM17.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. We welcome collaborative interaction on the project.\n(http://www.genome.gov/page.cfm?pageID=10506376).\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##
phosphate:phosphoenolpyruvate translocator
conserved uncharacterized DUF1168 containing protein
chlorophyll a/b-binding protein CP29, chloroplast precursor
LHCII minor polypeptide precursor (associated to PSII); ChloroP predicts 27 aa cTP
Intraflagellar Transport or IFT refers to the cellular process essential for the formation and maintenance of eukaryotic cilia and flagella
distantly related to glycosyltransferases
cytoplasmic dynein 2 light intermediate chain 1
May contain a IMPDH domain. IMP dehydrogenase / GMP reductase domain This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure
Cysteine-rich protein domains are also occuring in antifreeze proteins from insects
mitochondrial inner membrane magnesium ion channel protein (MRS2)
Encodes a protein with hydroxyproline-rich glycoprotein (HRGP) motifs
oxygen-evolving enhancer protein 3, chloroplast precursor
Oxygen evolving enhancer protein 3 (PsbQ). TargeT and ChloroP predict 34aa CTP; OEE3
Found in the flagellar proteome; conserved uncharacterized flagellar associated protein FAP46, tentative
Predicted bromodomain-containing protein. ChromDB ID: GTE20102
Retinoblastoma protein. ChromDB ID: RBL20101
Chlorophyll a-b binding protein L1818, chloroplast precursor; has high similarity to fucoxanthin chlorophyll a/c binding protein; chloroP and targetP do not predict cTP; role in light harvesting not well established.
resistance-nodulation-cell division superfamily
Niemann-Pick type C1 disease protein homolog
Predicted Enhancer of Polycomb-like protein, related to the Drosophila PcG protein Enhancer of Polycomb. ChromDB ID: EPL20101; EPc homolog
Histone H2A, core histone required for chromatin assembly and chromosome function. ChromDB ID: HTA20102
MsrA.Peptide-methionine-(S)-S-oxide reductase
Possesses a Pterin_4a domain. Pterin 4 alpha carbinolamine dehydratase is also known as DCoH (dimerisation cofactor of hepatocyte nuclear factor 1-alpha)
expressed; conserved uncharacterized protein cupC12
Has WW, DEAD and Helicase domains; The WW domain is a protein module with two highly conserved tryptophans that binds proline-rich peptide motifs in vitro; The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression
Ferritin, an iron storage molecule. A chloroplast transit peptide is present.
Blast hits of this protein are mainly bacterial DSBA oxidoreductase. This locus has EST support for the 3'UTR
expressed; conserved uncharacterized protein
contains IMP dehydrogenase/GMP reductase domain; expressed
Flagellar outer dynein arm heavy chain gamma (PF28)
Predicted protein with DNA methyltransferase domain and SNF2_N domain. ChromDB ID: CHR20102; Snf2, Ris1, Rad26 superclasses