Micromonas commoda chromosome 14, complete sequence.
Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas.
Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas
Submitted (22-JUN-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (23-DEC-2008) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CP001332.\nURL -- http://www.jgi.doe.gov/MicromonasRCC299\nJGI Project ID: 4000189\nOrganism available from the Center for Culture of Marine\nPhytoplankton (CCMP) and the Roscoff Culture collection (RCC)\nContacts: Alexandra Z. Worden (azworden@mbari.org)\n Igor Grigoriev (IVGrigoriev@lbl.gov)\nAnnotation done by the Micromonas genome consortium as identified\nin the authorship as listed as reference 1 above.\nThis organism was isolated from South Pacific surface waters in\n1998 by S.Boulben. This strain was rendered clonal and axenic in\nthe Worden Lab through plating and a series of antibiotic\ntreatments. Subsequently, the axenic strain was deposited at the\nCCMP (CCMP2709) and RCC (RCC827). RCC299 is also referred to as\nstrain NOUM17.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. We welcome collaborative interaction on the project.\n(http://www.genome.gov/page.cfm?pageID=10506376).\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##
related to Dol-P-Man: a-mannosyltransferases
Predicted SET domain containing protein. ChromDB ID: SDG20105
Aldehyde reductase is part of the aldo-keto reductase famly groups, which ae NADPH-dependant oxidoreductases. TargetP predicts a Mitochodrial TP of 49 AA.
based on similarity to database - low identity while many ALH seem to have high identities to one another.
Selenoprotein H. May be involved in redox processes. A member of the SelWTH family
ribulose bisphosphate carboxylase/oxygenase activase
Ribulose bisphosphate carboxylase/oxygenase activase; RA; RuBisCo activase; ChloroP and TargetP do not indicate TP, however 5 prime may be incomplete.
DB hits are selenoprotein W and tblastn search with the known human SelW sequence hits at this location. There is an inframe Sec codon (UGA) that is supported by EST. The intron is EST supported
early light induced protein-like protein
heat shock protein 70, mitochondrial precursor
HSP70, TargetP predicts 29 AA mTP; expressed
chloroplast envelope protein translocase family
inner chloroplast membrane translocase (import) Tic20
Glutathione peroxidase. Shows DB homology to both GPX and PHGPX. Number (GPX5) has not be determined phylogenetically and is simply to distinguish between GPX proteins within NOUM
peptide hydrolase, cysteine endopeptidase
Has Met_10 domain, member of the methyltransferase superfamily; expressed
High homology to CCMP1545 v2 Prot ID 56152
high homology to CCMP1545 Prot ID 46658; has Josephin and UBX domains. Function considered interactaction with key regulators of transcription and represses transcription
early light induced protein-like protein, chloroplast precursor
CBR (carotene biosynthesis-related) or ELIP; TargetP and ChloroP predict 33 aa cTP
Has some similarity to calpain domain - Calpains are a family of cytosolic cysteine proteinases (see)
has ZF_BBox and CCT domains; The B-box zinc finger is an around 40 amino acids domain
arsenite-antimonite efflux family transporter
H+-or Na+-translocating f-type, v-type and A-type ATPase superfamily
multidrug (P-glycoprotein homolog) (ABCB/MDR-type)
Predicted Methyl binding domain protein. ChromDB ID: MBD20101
candidate b-N-acetylglucosaminyltransferase
RecA/Rad51/DMC1 proteins are involved in homology searching and strand exchange in homologous recombination. This appears to be a Rad51B homolog
One of six ammonium transporters in NOUM17 genome
Has LUC7 N_terminus domain. This family contains the N terminal region of several LUC7 protein homologues and only contains eukaryotic proteins
UBA/THIF-type NAD/FAD binding fold domain/deoxiribonuclease
Has CALPAI, UANYLAT, GUANY and ADK domains
monovalent Cation:Proton antiporter-2 family
Has IG_FLMN domains: Filamin-type immunoglobulin domains; These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29)
contains BRCT, F-box and exo_endo_phos domains. The breast cancer susceptibility gene contains at its C-terminus two copies of a conserved domain that was named BRCT for BRCA1 C-terminus
CUP_A2; conserved uncharacterized protein, CupA2
contains F-box domain; expressed; putative uncharacterized f-box domain containing protein
Encodes a protein containing zinc-finger domains and a proline-rich domain
Encodes a protein with hydroxyproline-rich glycoprotein (HRGP) motifs
Peroxiredoxin. Majority of DB hits to marine bacteria, a few to plant chloroplast. UTRs and intron are EST supported. Possesses an in frame Sec codon
related to a-mannosyltransferases; expressed
Unclassified RPD3 type histone deacetylase protein with similarity to acetylpolyamine aminohydrolase (aphA) proteins of Archae. ChromDB ID: HDA20105; Rpd3/HDA1 superfamily
Predicted chromatin remodeling protein similar to the RING finger domain-containing proteins in the SNF2 superfamily of ATP dependent helicases. ChromDB ID: CHR20121; Snf2, Ris1, Rad26 superclasses
phosphate:phosphoenolpyruvate translocator
Malate/L-lactate dehydrogenase. This family consists of bacterial and archaeal Malate/L-lactate dehydrogenase. L-lactate dehydrogenase, catalyses the reaction (S)-lactate + NAD(+) <=> pyruvate + NADH
Contains several pfam domains including a zinc finger, Sec23_trunk, Sec23_BS, Sec23_hel, and gelsolin
Intraflagellar Transport or IFT refers to the cellular process essential for the formation and maintenance of eukaryotic cilia and flagella
Contains a Solute carrier (Solcar) repeat profile and Pfam Mito_carr or Mitochondrial carrier protein, A variety of substrate carrier proteins that are involved in energy transfer are found in the inner mitochondrial membrane or integral to the membrane of other eukaryotic organelles such as the peroxisome PUBMED:2158156, PUBMED:, PUBMED:8140286, PUBMED:8487299, PUBMED:8206158, PUBMED:8291088. Such proteins include: ADP,ATP carrier protein (ADP/ATP translocase); Alternative splicing variant 1
Contains a Solute carrier (Solcar) repeat profile and Pfam Mito_carr or Mitochondrial carrier protein, A variety of substrate carrier proteins that are involved in energy transfer are found in the inner mitochondrial membrane or integral to the membrane of other eukaryotic organelles such as the peroxisome PUBMED:2158156, PUBMED:, PUBMED:8140286, PUBMED:8487299, PUBMED:8206158, PUBMED:8291088. Such proteins include: ADP,ATP carrier protein (ADP/ATP translocase); Alternative splicing variant 2
CAF1 is an RNase of the DEDD superfamily, and a subunit of the Ccr4-Not complex that mediates 3' to 5' mRNA deadenylation
Contains the Pfam domains: FtsH_ext, AAA, and peptidase_M41
Contains the Pfam domain PP2C. Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases ()
Encodes a TALE superclass homeobox protein.
heat shock protein 70, putative chloroplast precursor
Contains the Pfam domain HEAT The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 PUBMED:7550332
Contains the Pfam domain GYF The glycine-tyrosine-phenylalanine (GYF) domain is an around 60-amino acid domain which contains a conserved GP[YF]xxxx[MV]xxWxxx[GN]YF motif
Contains multiple WD40 Pfam domains WD-40 repeats (also known as WD or beta-transducin repeats) are short 40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide
Contains Pfam domain Ribosomal_L18e Ribosomal proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44)
Conatins the Pfam domain Spc97_Spc98 Members of this family are spindle pole body (SBP) components such as Spc97, Spc98 and gamma-tubulin
Multidrug/Oligosaccharidyl-lipid/Polysaccharide flippase
Histone acetyltransferase in the MYST family; predicted homolog of yeast ESA1. ChromDB ID: HAM20102
Contains Pfam domain UPF0029 One of a group of uncharacterized proteins from yeast and bacteria. putative uncharacterized protein
Amyloplast Brittle-1 (BT1) protein homolog
Contains Pfam domain PseudoU_synth_2 Members of this family are involved in modifying bases in RNA molecules. They carry out the conversion of uracil bases to pseudouridine
Possesses AA_TRNA_LIGASE_II and tRNA-synt_2d domains
Possesses PspA_IM30 domain. The PspA/IM30 family includes PspA a protein that suppresses sigma54-dependent transcription
flagellar radial spoke nucleoside diphosphate kinase RSP23
Putative protein with hydroxyproline-rich glycoprotein (HRGP) motifs
shows conservation to NOUM17, Otauri and CCE9901; expressed
putative, interleukin-1b-converting enzyme
mitochondrial iron transporter(ABCB/ATM1)
Histone acetyltransferase in the MYST family similar to Saccharomyces cerevisiae SAS2 protein. ChromDB ID: HAM20103
cytosine/purines/uracil/thiamine/allantoin; NCS1
Fructose-1,6-bisphosphatase, an enzyme that catalyzes the hydrolysis of fructose-1,6-biphosphate into fructose-6-phosphate and is critical in gluconeogenesis pathway