Micromonas commoda chromosome 13, complete sequence.
Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas.
Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas
Submitted (22-JUN-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (23-DEC-2008) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CP001331.\nURL -- http://www.jgi.doe.gov/MicromonasRCC299\nJGI Project ID: 4000189\nOrganism available from the Center for Culture of Marine\nPhytoplankton (CCMP) and the Roscoff Culture collection (RCC)\nContacts: Alexandra Z. Worden (azworden@mbari.org)\n Igor Grigoriev (IVGrigoriev@lbl.gov)\nAnnotation done by the Micromonas genome consortium as identified\nin the authorship as listed as reference 1 above.\nThis organism was isolated from South Pacific surface waters in\n1998 by S.Boulben. This strain was rendered clonal and axenic in\nthe Worden Lab through plating and a series of antibiotic\ntreatments. Subsequently, the axenic strain was deposited at the\nCCMP (CCMP2709) and RCC (RCC827). RCC299 is also referred to as\nstrain NOUM17.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. We welcome collaborative interaction on the project.\n(http://www.genome.gov/page.cfm?pageID=10506376).\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##
Encodes a SHAQYF-like Myb-family transcription factor with a C-terminal MPN domain (IPR000555) involved in protein-protein interaction.
Encodes a ADAM-related protein with hydroxyproline-rich glycoprotein (HRGP) motifs
Encodes a plant-specific zinc-dependent DNA binding protein involved in AT-rich sequence-mediated transcriptional repression.
hypothetical protein with Sel1 repeat domain
Predicted homolog of Saccharomyces cerevisiae RAD6 protein, a Ubiquitin-conjugating enzyme (E2), involved in postreplication repair. ChromDB ID: HUPB20101
expressed; hypothetical uncharacterized protein
pfam 00478: IMP dehydrogenase / GMP reductase domain This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure
pfam00240, ubiquitin, Ubiquitin family. This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin
conserved uncharacterized protein cupC12
pfam06424, PRP1_N, PRP1 splicing factor, N-terminal
Cysteine-rich protein domains are also occuring in antifreeze proteins from insects
Multidrug/Oligosaccharidyl-lipid/Polysaccharide flippase
haemolysin-iii related expressed protein
6-phosphogluconate dehydrogenase (6PGDH) chloroplast precursor
OPP enzyme. Model need 5' editing. ChloroP predicts cTP of predicted initiator Met.
Possesses Aldo_ket_red domain. The aldo/keto reductase family includes a number of K+ ion channel beta chain regulatory domains - these are reported to have oxidoreductase activity
Encodes a GATA-like transcription factor.
Containing N-terminal hydroxyproline-rich glycoprotein (HRGP) motifs
shows conservation to NOUM17, O. tauri and CCE9901.
UbiA prenyltransferase domain-containing protein
shows conservation to CCMP1545 and CCE9901
photosystem II oxygen-evolving complex 23 kDa protein, chloroplast precursor
23 kDa subunit of oxygen evolving system of photosystem II; TargeT and ChloroP predict 25aa cTP
One of six ammonium transporters in NOUM17 genome
Encodes a prasinophyte-specific homeobox protein with N-terminal PHD-finger domain.
carbohydrate-binding module family 20 protein
Predicted histone H3 lysine 27 histone methyltransferase. ChromDB ID: SDG20101
Putative pyruvate, phosphate dikinase, chloroplast precursor. Model contains a transit peptide for chloroplast localisation (Chloro P and Target P). Catalytic activity: ATP + pyruvate + phosphate = AMP + phosphoenolpyruvate + diphosphate
small conductance mechanosensitive ion channel family
small-conductance mechanosensitive ion channel
phosphate:phosphoenolpyruvate translocator
Encodes a protein with hydroxyproline-rich glycoprotein (HRGP) motifs at C-terminus
isopentenyl-diphosphate delta-isomerase I
retention in the endoplasma reticulum 1-like protein
Rer1 family. RER1 family protein are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment. The C terminus of yeast Rer1p interacts with a coatomer complex.
papain-like cysteine peptidase; contains peptidase_C1A_CathepsinB domain
Putatiave homolog of Saccharomyces cerevisiae RTF1, a RNA polymerase II-associated Paf1p complex protein
TargeT predicts 54aa mTP whereas chloroP predicts 53aa cTP
CotH protein. Members of this family include the spore coat protein H (cotH). conserved hypothetical protein with CotH domain
involved in nitrogen assimilation, catalyzes: 2 L-glutamate + 2 oxidized ferredoxin = L-glutamine + 2-oxoglutarate + 2 reduced ferredoxin + 2 H+
multidrug (P-glycoprotein homolog) (ABCB/MDR-type)
mitotic arrest deficient-like protein; Described as being required for the execution of the mitotic checkpoint which monitors the process of kinetochore-spindle attachment and delays the onset of anaphase when this process is not complete
Flavin containing (binding) amine oxidoreductase. This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO).
early light induced protein-like 6, chloroplast precursor
Has SAP domain and similarity to CCMP1545 v2 Prot ID 53512; The SAP motif is found in a variety of nuclear proteins involved in transcription, DNA repair, RNA processing or apoptotic chromatin degradation. expressed
chlorophyll a/b-binding protein CP26, chloroplast precursor
Predicted homolog of yeast Pob3 and human SSRP1, two subunits comprising the FACT complex (Facilitates Chromatin Transcription); the FACT complex regulates important chromatin-related processes such as transcription, DNA replication and DNA repair
DB hits are selenoprotein T and tblastn search with the known human SelT sequence hits at this location. There is an inframe Sec codon (UGA) that is supported by EST. The intron is EST supported
Predicted member of the SWI/SNF family of proteins with similarity to human SMARCAL1. ChromDB ID: CHR20111; Snf2, Ris1, Rad26 superclasses
exinuclease ABC subunits B and C-containing protein
Has DEXH and HELICc domains; Also shows UvrB (Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]), GIY-YIG type nucleases (URI domain), and UvrC (UvrC Helix-hairpin-helix N-terminal
CaiA domain - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]; also has partial NAD_4 - Male sterility protein
shows conservation to CCMP1545; uncharacterized protein
Fructose-1,6-bisphosphatase, an enzyme that catalyzes the hydrolysis of fructose-1,6-biphosphate into fructose-6-phosphate and is critical in gluconeogenesis pathway
related to Dol-P-Man: a-mannosyltransferases
Predicted SET domain containing protein. ChromDB ID: SDG20127
photosystem II manganese-stabilizing polypeptide
33 KDa photosystem II polypeptide from the oxygen evolving complex (OEC). TargeT and ChloroP predict 20aa cTP
dynein-1-beta heavy chain, flagellar inner arm I1 complex
Member of the RUVB-like protein family; homologous to Saccharomyces cerevisiae RVB proteins which are involved in transcription regulation and are components of chromatin remodeling complexes. ChromDB ID: RUVBL20101
ZF_RING domaing containing (A number of eukaryotic and viral proteins contain a conserved cysteine-rich domain of 40 to 60 residues (called C3HC4 zinc-finger or 'RING' finger) [1] that binds two atoms of zinc)
ankryin repeat domain-containing protein
ankyrin repeat domain containing; expressed
Dynein heavy chain (putative flagellar inner arm dynein heavy chain)
Predicted homolog of HOMSA_SAE1, the SUMO1 activating enzyme subunit 1; sumolyation of histones antagonizes acetylation and ubiquitylation. ChromDB ID: SAET20101
Alfin-like domain containing protein without C-terminal PHD-finger.
Similar to a protein kinase from Chlamy whose phosphorylation is regulated by genetic adhesion during Chlamydomonas fertilization.
probably the flavoprotein subunit; the succinate dehydrogenase protein complex is a 4 subunits complex that catalyzes the reaction: succinate + ubiquinone = fumarate + ubiquinol