Micromonas commoda chromosome 10, complete sequence.
Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas.
Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas
Submitted (22-JUN-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (23-DEC-2008) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CP001576.\nURL -- http://www.jgi.doe.gov/MicromonasRCC299\nJGI Project ID: 4000189\nOrganism available from the Center for Culture of Marine\nPhytoplankton (CCMP) and the Roscoff Culture collection (RCC)\nContacts: Alexandra Z. Worden (azworden@mbari.org)\n Igor Grigoriev (IVGrigoriev@lbl.gov)\nAnnotation done by the Micromonas genome consortium as identified\nin the authorship as listed as reference 1 above.\nThis organism was isolated from South Pacific surface waters in\n1998 by S.Boulben. This strain was rendered clonal and axenic in\nthe Worden Lab through plating and a series of antibiotic\ntreatments. Subsequently, the axenic strain was deposited at the\nCCMP (CCMP2709) and RCC (RCC827). RCC299 is also referred to as\nstrain NOUM17.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. We welcome collaborative interaction on the project.\n(http://www.genome.gov/page.cfm?pageID=10506376).\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##
glutamate-1-semialdehyde 2,1-aminomutase
Fa1p is a 171 kDa protein essential for axonemal microtubule severing in Chlamydomonas
Putative cyclin D1 involved in the control of the cell division cycle
Phosphoglycolate phosphatase, chloroplast precursor. If the model is extended upstream in 5' direction, a chloroplast targeting peptide is detected. PGP cleaves the phosphate group from P-glycolate during photorespiration.
Cyclin B controling the cell division cycle
glyceraldehyde-3-phosphate dehydrogenase
Protein has transit peptide on N-terminus (27 aa). ChloroP positive.
Putative adenylate kinase; this model contains ADK and ADK_lid domains
This model contains a cytochrome b5-like Heme/Steroid binding domain. This family includes heme binding domains from a diverse range of proteins
Putative uncharacterized protein; this model may contain a dpy-30 motif
Putative cysteinyl-tRNA synthetase; this model contains a tRNA synthetases class I catalytic domain this family includes only cysteinyl tRNA synthetases synthetase
candidate glycosyltransferase; hypothetical protein
Predicted histone H3 lysine 4 methyltransferase. ChromDB ID: SDG20107
Possesses cyclic nucleotide-binding domains. Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues PUBMED:14638413, PUBMED:10550204, PUBMED:1710853
Putative Mitochondrial ClpX chaperone; this model contains an AAA domain and a nacht-ntpase domain profile
Putative protein; this model contains a zinc finger mynd-type signature and profile and a set domain profile
Putative protein; this model contains a nodulin-like domain
Putative protein; this model contains a BSD domain
Contains a Peptidase_S8 domain also known as a subtilase. Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases.
encodes a protein with hydroxyproline-rich glycoprotein motifs
transcription initiation factor IIE, alpha subunit
This model may contain a DeoR-type HTH domain signature and profile
resistance-nodulation-cell division superfamily
Dispatched segment polarity protein (cholesterol release)
This model contains a P-II family profile. P-II family proteins are regulators of nitrogen metabolism, with a length of 110 amino acid residues, found throughout the bacteria and most archaea
This model contains Trp-Asp (WD-40) repeats signature and profiles
Putative superoxide dismutase copper chaperone; this model contains a heavy-metal-associated domain and a Copper/zinc superoxide dismutase domain
Superoxide dismutases (SODs) catalyse the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one.
This model contains post-SET domains (SETPO). The SET domain is an 130- to 140-amino acid, evolutionary well conserved sequence motif
Encodes a protein with hydroxyproline-rich glycoprotein (HRGP) motifs
This model contains EFhand domains and a Globin family profile. EF-hands can be divided into two classes: signaling proteins and buffering/transport proteins
This model contains homoserine dehydrogenase and NAD binding domains. expressed
expressed; putative uncharacterized protein
This model contains a tetratrico peptide repeat (TPRs) - a degenerate 34-amino acid repeated motif that is widespread among all organisms
This model contains a cyclophilin-type peptidyl-prolyl cis-trans isomerase signature & profile
One of six ammonium transporters in NOUM17 genome
has 33 aa cTP based on ChloroP; expressed; putative uncharacterized protein
phosphate:phosphoenolpyruvate translocator
CUP B001; conserved uncharacterized protein cup B001, predicted
The Chlamydomonas PF6 locus encodes a large alanine/proline-rich polypeptide that is required for assembly of a central pair projection and regulates flagellar motility
cupC7, conserved uncharacterized protein
Putatiave homolog of Saccharomyces cerevisiae LEO1, a RNA polymerase II-associated Paf1p complex protein
LeuA.Catalyzes the first step in the biosynthesis of leucine, the condensation of acetyl-CoA and alpha-ketoisovalerate to form 2-isopropylmalate synthase. TargetP indicates a 32 AA chloroplast TP.
expressed; conserved uncharacterized protein
putative, cellular apoptosis susceptibility protein
g2-like myb-transcription factor with a n-terminal response regulator receiver domain
condensin complex component, barren domain-containing non-smc subunit
Predicted non-SMC subunit similar to the Drosophila Barren (barr) gene which is required for sister-chromatid segregation in mitosis. ChromDB ID: CPH20101
inward rectifier K+ channel family transporter
may be ER lumen version of HSP70; expressed
photosystem II PsbR protein, chloroplast precursor
targeT and chloroP predict 32aa cTP; expressed
Predicted bromodomain-containing protein. ChromDB ID: GTE20103
glucose-6-phosphate dehydrogenase (G6PDH) chloroplast precursor
Glucose-6-phosphate dehydrogenase. Model needs editing at 5'. Initiator Met is 26 aa of predicted init. Met. ChloroP predicts a cTP with 41 aa.
dihydrolipoamide s-acetyltransferase of the pyruvate dehydrogenase
putative dihydrolipoamide S-acetyltransferase. May be a subunit of the pyruvate dehydrogenase complexe (PDC), but no signal peptide predicted (SignalP, targetP, ChloroP)
small conductance mechanosensitive ion channel family
small-conductance mechanosensitive ion channel
similarities are partial to peri implantation stem cell 1 and weak association to RRM domain (RNA binding); expressed uncharacterized protein
Predicted protein arginine N-methyltransferase similar to human PRMT5. ChromDB ID: PRMT20103
Predicted SET domain containing protein. ChromDB ID: SDG20102
Predicted homolog of Saccharomyces cerevisiae SIR2 protein, an NADH dependent Histone Deacetylase. ChromDB ID: SRT20101
Predicted member of the Structural Maintenance of Chromosome (SMC) superfamily and a member of the cohesin complex protein sub-family; predicted homolog of Saccharomyces cerevisiae SMC1. ChromDB ID: CPC20104; SMC protein group
Predicted chromodomain protein with similarity to the Arabidopsis thaliana terminal flower 2 protein. ChromDB ID: CRD20101
Predicted chromatin remodeling protein similar to the RING finger domain-containing proteins in the SNF2 superfamily of ATP dependent helicases. ChromDB ID: CHR20104; Snf2, Ris1, Rad26 superclasses
E1 component of the pyruvate dehydrogenase complex
The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic componentsPredicted as a mitochodrial precursor however there are no transit peptides.
monovalent Cation:Proton antiporter-1 family
Predicted chromatin remodeling protein similar to the RING finger domain-containing proteins in the SNF2 superfamily of ATP dependent helicases. ChromDB ID: CHR20119; Snf2, Ris1, Rad26 superclasses
This model contains a Zinc finger SBP-type profile.SQUAMOSA promoter binding proteins (SBPs) form a major family of plant-specific transcription factors related to flower development
glutamate-gated ion channel neurotransmitter receptor family
Predicted HMB-box superfamily protein. ChromDB ID: HMGB20102
candidate polysaccharide-forming b-glycosyltransferase, related to mannan synthases
This model contains the major facilitator superfamily (MFS) profile (sugar_tr)
This model contains Trp-Asp (WD-40) repeats signature and profiles. putative protein
This model contains two 4Fe-4S binding domains. The superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases.
CAAX amino terminal protease family family members are probably proteases (after a prenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein, the AAX tripeptide is removed by one of the CAAX prenyl proteases)
LeuA.Catalyzes the first step in the biosynthesis of leucine, the condensation of acetyl-CoA and alpha-ketoisovalerate to form 2-isopropylmalate synthase. TargetP indicates a 45 AA chloroplast TP.
This model contains a Poly(ADP-ribose) polymerase zinc finger domain and a WD domain, G-beta repeat
Encodes a protein with a LIM-type zinc finger domain at C-terminus.
This model contains a clathrin adaptor complex small chain, which is a member of the SNARE-like superfamily clan. putative protein
photosystem I subunit X, chloroplast precursor
Also known as PSI K- ChloroP and TargeT predict 34aa cTP
This model contains a C3HC4 type zinc-finger (RING finger) domain. Many proteins containing a RING finger play a key role in the ubiquitination pathway. putative protein
Mycoplasma protein of unknown function, DUF285 domain; putative uncharacterized protein
This model contains a Trp-Asp (WD-40) repeat signature and profile. putative protein; Alternative splicing variant 1
Predicted Polycomb group protein similar to the Drosophila PcG protein ESC. ChromDB ID: PGE20101; Alternative splicing variant 2
Pedicted member of the JMJD4 Group in the JmjN_JmjC Protein Family. ChromDB ID: JMJ20106
RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms
ytidine and deoxycytidylated deaminase zinc-binding protein
contains pfam domain PF00383.13 Cytidine and deoxycytidylated deaminase zinc-binding region and shows conservation to CCMP1545; expressed
shows conservation to CCMP1545, Otauri and CCE9901; expressed; uncharacterized protein
This model contains a Dehydrogenase E1 component, a Transketolase, pyrimidine binding domain, and a Transketolase, C-terminal domain.
Encodes a TALE superclass homeobox protein, related to GSP1 in Chlamydomonas
This model contains a C3HC4 type zinc-finger (RING finger)and a PHD-finger. Many proteins containing a RING finger play a key role in the ubiquitination pathway
Encodes a PBF2-domain containing transcription factor.
CUP B004, shows conservation to CCMP1545; conserved uncharacterized protein cup B004, predicted
molybdopterin synthase, large subunit CNX6
This is an enzyme involved in molybdenum cofactor biosynthesis.
Triosephosphate isomerase [Carbohydrate transport and metabolism]; plastidic (ChloroP) cTP = 29aa.
uroporphyrinogen decarboxylase chloroplast precursor
transcription initiation factor IID, 31kD subunit
putative uncharacterized u-box containing protein