Micromonas commoda chromosome 9, complete sequence.
Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas.
Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas
Submitted (22-JUN-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (23-DEC-2008) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CP001329.\nURL -- http://www.jgi.doe.gov/MicromonasRCC299\nJGI Project ID: 4000189\nOrganism available from the Center for Culture of Marine\nPhytoplankton (CCMP) and the Roscoff Culture collection (RCC)\nContacts: Alexandra Z. Worden (azworden@mbari.org)\n Igor Grigoriev (IVGrigoriev@lbl.gov)\nAnnotation done by the Micromonas genome consortium as identified\nin the authorship as listed as reference 1 above.\nThis organism was isolated from South Pacific surface waters in\n1998 by S.Boulben. This strain was rendered clonal and axenic in\nthe Worden Lab through plating and a series of antibiotic\ntreatments. Subsequently, the axenic strain was deposited at the\nCCMP (CCMP2709) and RCC (RCC827). RCC299 is also referred to as\nstrain NOUM17.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. We welcome collaborative interaction on the project.\n(http://www.genome.gov/page.cfm?pageID=10506376).\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##
Encodes a protein with hydroxyproline-rich glycoprotein (HRGP) motifs
Multidrug/Oligosaccharidyl-lipid/Polysaccharide flippase
expressed; conserved uncharacterized protein cup B006
conserved uncharacterized protein, cup B005
Predicted protein with similarity to RNA-dependent RNA polymerases. ChromDB ID: RHEL20101
Putative dual phosphatase cdc25. Control cell division cycle
Encodes a protein containing Myb domain with hydroxyproline-rich glycoprotein (HRGP) motifs
potassium ion channel shaker-related subfamily
Cyanobacterial chloroplast-targeted protein of unknown function
nuclear envelope protein okuribin distant
nuclear envelope protein okuribin distant homolog
Thioredoxin/glycogen binding domain family fusion protein
Contains ABC transporter domains and HEAT repeats. The HEAT repeat family is related to armadillo/beta-catenin-like repeats
expressed; weak similarity to antifreeze glycoprotein; hypothetical protein
flagellar outer dynein arm light chain 6
Partner of MSH5 (MutS homolog 5) (MicpuN2:112660). Promotes cross-over formation during meiotic recombination.
carotene biosynthesis related or early light induced-like protein
carotene biosynthesis related (CBR) or low molecular mass early light-induced protein; neither ChloroP or TargetP predict cTP
carotene biosynthesis related or early light induced-like protein, chloroplast percursor
contains both the catalytic and c-terminal domains expected. Also has a dual specificity phosphatase catalytic domain 5 prime to the mRNA capping domians.
This is a family of queuine tRNA-ribosyltransferases, also known as tRNA-guanine transglycosylase and guanine insertion enzyme
mannose-P-dolichol utilization defect 1 protein homolog
Acyl-protein thioesterase 1 (Lysophospholipase 1
LHCII-phosphorylating Serine/threonine-protein kinase, chloroplast precursor
U1-A/U2-B small nuclear ribonucleoprotein
peroxisomal fatty acyl CoA ABC transporter (P-FAT) family
signal recognition particle receptor alpha subunit (SR-alpha)
cupC3, conserved uncharacterized protein
integral membrane peroxisomal protein importer-2 family
peroxisomal protein import (Pex19); PPI2
Predicted SET domain containing protein. ChromDB ID: SDG20128
Hydroxy/Aromatic amino acid permease family
Predicted Class I RPD3 type histone deacetylase protein. ChromDB ID: HDA20103; Rpd3/HDA1 superfamily
XPA (DNA repair protein)-binding GTPase homolog
tetrapyrrole methylase/MazG family protein
transient receptor potential Ca2+ channel family
transient receptor potential calcium ion channel
sterile alpha motif domain-containing protein
Coatomer protein complex, subunit zeta 1
chloroplast envelope protein translocase family
outer chloroplast membrane translocase (import) IAP75
expressed; putative uncharacterized protein
H/ACA ribonucleoprotein complex subunit, nucleolar pseudouridine synthase
Hypoxanthine-guanine phosphoribosyltransferase
3-methyl-2-oxobutanoate hydroxymethyltransferase
Tubulin is the major constituent of microtubules. Gamma tubulin is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome, suggesting that it is involved in the minus-end nucleation of microtubule assembly.
phosphate:phosphoenolpyruvate translocator
SNF2 superfamily chromatin remodeling protein, predicted homolog of Saccharomyces cerevisiae SWR1 protein, a component of the SWR1 complex required for the incorporation of Htz1p into chromatin. ChromDB ID: CHR20109; Snf2, Ris1, Rad26 superclasses
Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain
COG1112 Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] and Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins
dna-directed RNA polymerase II polypeptide a
U3 snoRNA-associated protein 1 Pwp2, putative
snoRNA-binding nucleolar protein, putative
Conserved protein homolog to vertebrate Armadillo repeat-containing protein
Serine/threonine-protein phosphatase PP2A catalytic subunit
eukaryotic translation initiation factor 2 subunit alpha
JmjC domain-containing protein; predicted histone demethylase which can specifically demethylate H3K36 tri- and dimethyl modification states. ChromDB ID: JMJ20105
Ca2+-dependent lipid-binding protein, putative synaptotagmin
inner chloroplast membrane translocase (import) Tic55
photosystem I subunit XI, chloroplast precursor
Also known as PSI L- ChloroP and targeT predict 45aa cTP
Cys/His-containing conserved protein of unknown function
mRNA transcription-export coupling THO complex, subunit 2
dihydrolipoyllysine-residue succinyltransferase
Dihydrolipoyllysine-residue succinyltransferase which is a component of 2-oxoglutarate dehydrogenase complex
Predicted bromodomain-containing protein. ChromDB ID: GTE20105
Phosphatidate cytidylyltransferase related protein
Has AAA AAA_2 and ClpA domains; chloroP predicts 51 aa cTP
potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel
stromal heat shock protein 70 kDa, chloroplast precursor
Encode a protein with hydroxyproline-rich glycoprotein (HRGP) motifs; putative uncharacterized protein
carbohydrate-binding module family 43 protein
Hits the X8 domain that contains 6 conserved cysteine residues that presumably form three disulphide bridges
Dicarboxylate/Amino Acid:Cation symporter family
proton/sodium ion:neutral amino acid symporter; Na+ or H+
3-oxoacyl-[acyl-carrier-protein] synthase, plastid precursor
Cysteine-rich protein domains are also occuring in antifreeze proteins from insects
similarity to eugene model protein ID 53432 (CCMP1545)
homology to NOUM17 v2 EuGene.0000150106; conserved hypothetical protein
high homology to CCMP1545 v2 model EuGene.0000150104; conserved hypothetical protein
Mre11 pairs with Rad50 (MicpuN1:60167) to repair DNA double strand breaks
Predicted histone demethylases similar to AOF2/ LSD1 homologs. ChromDB ID: HDMA20101; AOF2/ LSD1 homolog
2OG-Fe(II) oxygenase superfamily. This family contains members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily
peptidyl-tRNA hydrolase, potentially chloroplast precursor
Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome
outer chloroplast membrane translocase (import) Toc(IAP)86
expressed putative uncharacterized protein
condensin complex component, non-smc subunit
Non-SMC condensin subunit ChromDB ID: CPG20101
Encodes a Squamosa-promoter-binding protein (SBP).
photosystem I subunit II, chloroplast precursor
sodium ion:calcium ion+potassium ion antiporter
phosphoglycolate phosphatase catalyzes the dephosphorylation of 2-phosphoglycolate
seems to be of bacterial origin, all the hits are to bacterial sequences. Has a weak hit to PF00155.11 Aminotransferase class I and II.
KO406-related Conserved protein of Unknown function
CUP B003, shows conservation to CCMP1545, Otauri and CCE9901; conserved uncharacterized protein cup B003, predicted
CUP B002, shows conservation to CCMP1545, Otauri and CCE9901; conserved uncharacterized protein cup B002, predicted
Predicted Class III RPD3 type histone deacetylase protein. ChromDB ID: HDA20101; Rpd3/HDA1 superfamily
resistance-nodulation-cell division superfamily
conserved uncharacterized protein (CUP A8)
has similarity to CCMP1545 model; expressed; uncharacterized protein
signal recognition particle protein (SRP54)
secretory signal peptide predicted by TargetP; SignalP and ChloroP do not indicate any transit peptide. putatively cytosolic
expressed; semi-conserved uncharacterized protein cupA33
conserved uncharacterized protein cupA32
8-amino-7-oxononanoate synthase-like protein
dihydrolipoamide s-acetyltransferase of the pyruvate dehydrogenase
putative dihydrolipoamide S-acetyltransferase. May be a subunit (E2) of the pyruvate dehydrogenase complexe (PDC), but no signal peptide predicted (SignalP, targetP, ChloroP)
In Chlamydomonas reinhardtii, glycogen synthase kinase 3 regulates flagellar assembly.
Predicted member of the Structural Maintenance of Chromosome (SMC) superfamily and a member of the condensin sub-family; predicted homolog of Saccharomyces cerevisiae SMC2. ChromDB ID: CPC20102; SMC protein group
XRCC3 is a member of the Rad51 subfamily of the recA family of DNA repair/combination proteins which repair double-strand breaks through homologous recombination
carbohydrate-binding module family 20 protein