Micromonas commoda chromosome 7, complete sequence.
Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas.
Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas
Submitted (22-JUN-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (23-DEC-2008) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CP001328.\nURL -- http://www.jgi.doe.gov/MicromonasRCC299\nJGI Project ID: 4000189\nOrganism available from the Center for Culture of Marine\nPhytoplankton (CCMP) and the Roscoff Culture collection (RCC)\nContacts: Alexandra Z. Worden (azworden@mbari.org)\n Igor Grigoriev (IVGrigoriev@lbl.gov)\nAnnotation done by the Micromonas genome consortium as identified\nin the authorship as listed as reference 1 above.\nThis organism was isolated from South Pacific surface waters in\n1998 by S.Boulben. This strain was rendered clonal and axenic in\nthe Worden Lab through plating and a series of antibiotic\ntreatments. Subsequently, the axenic strain was deposited at the\nCCMP (CCMP2709) and RCC (RCC827). RCC299 is also referred to as\nstrain NOUM17.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. We welcome collaborative interaction on the project.\n(http://www.genome.gov/page.cfm?pageID=10506376).\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##
ACC.Carries out three functions: biotin carboxyl carrier protein, biotin carboxylase and carboxyltransferase. TargetP predicts a 97 AA mitochondrial TP.
SECIS-binding protein 2. Binds to the SECIS element in the 3'-UTR of some mRNAs encoding selenoproteins. Binding is stimulated by SELB. There is EST support for this protein.
TargeT predicts 22aa mTP and ChloroP predicts 15aa cTP
copper type II ascorbate-dependent monooxygenase
Encodes a calmodulin-binding transcription activator (CAMTA) with a C-terminal ankyrin domain.
Anaphase promoting complex (APC10). Probably incomplete and first exon is lacking.
Predicted DNA methyltransferase. ChromDB ID: DMT20106
Putative protein with hydroxyproline-rich glycoprotein (HRGP) motifs
RecA/Rad51 proteins are involved in homology searching and strand exchange in homologous recombination. This recA the homolog of the Ostreococcus recA homologs Ostta4:19698 and Ost9901_3:26240
glycine cleavage system T-protein, one of four subunits of the glycine cleavage system (aka glycine decarboxylase)
H+-or Na+-translocating f-type, v-type and A-type ATPase superfamily
Predicted member of the SWI/SNF family of proteins with similarity to human SMARCAL1. ChromDB ID: CHR20128; Snf2, Ris1, Rad26 superclasses
Encodes a GP3-related protein with hydroxyproline-rich glycoprotein (HRGP) motifs and FAS domain
dynein, 78 kDa intermediate chain, flagellar outer arm
response regulator receiver/WD40 domain fusion protein
glyceraldehyde-3-phosphate dehydrogenase a chloroplast precursor
GAPA; ChloroP and TargetP predict 29AA Chloroplast target peptide
glycine cleavage system P-protein, one of four subunits of the glycine cleavage system (aka glycine decarboxylase)
Multidrug/Oligosaccharidyl-lipid/Polysaccharide flippase
serine-pyruvate aminotransferase and/or alanine glyoxylate transaminase
Putative alanine glyoxylate aminotransferase domain; however, strong alignment with putative serine-pyruvate aminotransferase - i.e
chloroplast envelope protein translocase family
inner chloroplast membrane translocase (import) Tic55
bacterial-like fructose-1,6-bisphosphatase
mitochondrial protein translocase family
outer membrane translocase (import) Tom40
fructose-bisphosphate aldolase, class II
Fumarate hydratase class 2(c) fumarate hydratase is an enzyme involved in the Tricarboxylic Acid Cycle that catalyzes the hydration (addition of H2O across a double bond) of Fumarate to L-malate
outer dynein arm docking complex protein oda-dc
One of six ammonium transporters in NOUM17 genome
expressed; conserved uncharacterized protein
Predicted homolog of Saccharomyces cerevisiae SIR2 protein, an NADH dependent Histone Deacetylase. ChromDB ID: SRT20103
U3 snornp-associated-like WD40 repeat-containing protein
ribonuclease III/double strand RNA binding domain-containing protein
Has two domains: The first is for Ribonuclease III family proteins; The second is Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA
Bromodomain-containing protein with similarity to the human polybromo1 protein (PBRM1), chromatin-remodeling complex protein that functions in regulating eukaryotic gene transcription. ChromDB ID: BRD20101
Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform
Protein phosphatase 2A regulatory B subunit (B56 family). Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism
expressed; semi-conserved uncharacterized protein cupA34
candidate digalactosyldiacylglycerol synthase
ADP-glucose pyrophosphorylase small subunit ADP-glucose pyrophosphorylase
Intraflagellar Transport or IFT refers to the cellular process essential for the formation and maintenance of eukaryotic cilia and flagella
Has two domains - Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism
Histone H2B, core histone required for chromatin assembly and chromosome function. ChromDB ID: HTB20103
Histone H2A, core histone required for chromatin assembly and chromosome function. ChromDB ID: HTA20103
PF05216: UNC-50 family Gmh1p (GMH1_YEAST) from S. cerevisiae is located in the Golgi membrane and interacts with ARF exchange factors [1]
proteasome regulatory complex component protein
PF01851: Proteasome/cyclosome repeats. This family is a member of the Armadillo repeat superfamily clan
Encodes a small protein with hydroxyproline-rich glycoprotein (HRGP) motifs
Encodes a protein with hydroxyproline-rich glycoprotein (HRGP) motifs
flagellar associated protein FAP45, tentative
found in the flagellar proteome in Chlamy
ChloroP and TargeT predict 38aa cTP. GGPS6
glucose-6-phosphate:phosphate translocator
Histone acetyltransferase in the GNAT/MYST superfamily; predicted homolog of yeast HAT1. ChromDB ID: HAG20101
Has Dead and Helicase domains. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids
prasinophyte specific chlorophyll a/b-binding protein, chloroplast precuror
prasinophyte specific chlorophyll a/b-binding protein, chloroplast precursor
Likely belongs to major facilitator super family (MFS) and contains DUF791. MFS includes sugar transporters.
EST support. putative uncharacterized protein, ed
nascent polypeptide-associated complex subunit alpha-like protein
Predicted SET domain containing protein. ChromDB ID: SDG20108
TAP42-like family. The TOR signalling pathway activates a cell-growth program in response to nutrients. TIP41 (PFAM:PF04176) interacts with TAP42 and negatively regulates the TOR signaling pathway. expressed
candidate bifunctional trehalose-6-phosphate synthase/trehalose-6-phosphate phosphatase
Predicted AT-Rich (Arid domain) Interaction Domain Protein. ChromDB ID: ARID20101
candidate bifunctional family GT51 b-glycosyltransferase/PBP transpeptidase (candidate murein polymerase)
Calvin cycle enzyme. ChloroP positive, cTP length 27 aa
Encodes a protein with two LIM-type zinc finger domains.
phosphate:phosphoenolpyruvate translocator
sodium ion:calcium ion+potassium ion antiporter
Encodes a Squamosa-promoter-binding protein (SBP).
expressed; conserved uncharacterized protein cupA7
ChloroP predicts 21aa cTP whereas targeT predicts 23 sTP.
Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]; COG2896
regulator of chromosome condensation RCC1
The regulator of chromosome condensation (RCC1) is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS)
Predicted Class III RPD3 type histone deacetylase protein. ChromDB ID: HDA20104; Rpd3/HDA1 superfamily
Encodes a protein containing ZF_BBox and CCT domains
Amyloplast Brittle-1 (BT1) protein homolog
Nucleotide binding protein Maf. Maf has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea, but homologs in B.subtilis and S.cerevisiae are nonessential for cell division.