Micromonas commoda chromosome 5, complete sequence.
Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas.
Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas
Submitted (22-JUN-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (23-DEC-2008) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CP001326.\nURL -- http://www.jgi.doe.gov/MicromonasRCC299\nJGI Project ID: 4000189\nOrganism available from the Center for Culture of Marine\nPhytoplankton (CCMP) and the Roscoff Culture collection (RCC)\nContacts: Alexandra Z. Worden (azworden@mbari.org)\n Igor Grigoriev (IVGrigoriev@lbl.gov)\nAnnotation done by the Micromonas genome consortium as identified\nin the authorship as listed as reference 1 above.\nThis organism was isolated from South Pacific surface waters in\n1998 by S.Boulben. This strain was rendered clonal and axenic in\nthe Worden Lab through plating and a series of antibiotic\ntreatments. Subsequently, the axenic strain was deposited at the\nCCMP (CCMP2709) and RCC (RCC827). RCC299 is also referred to as\nstrain NOUM17.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. We welcome collaborative interaction on the project.\n(http://www.genome.gov/page.cfm?pageID=10506376).\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##
expressed; semi-conserved uncharacterized protein cupA31
mitochondrial iron transporter(ABCB/ATM1)
adenosylmethionine/pyridoxal dependant decarboxylase fusion protein
Fusion of two domains. At 5 prime have Adenosylmethionine decarboxylase. This is a family of S-adenosylmethionine decarboxylase (SAMDC) proenzymes
transcription elongation-nucleosome displacement protein
Predicted homolog Saccharomyces cerevisiae Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure/assembly. ChromDB ID: GTB20101; Spt6 homolog
type II DNA topoisomerase VI subunit A 1
Spo11/Topoisomerase 6A proteins initiate double strand break formation in meiotic recombination and are related to type II topoisomerase 6 subunit A of archaea
phosphate:phosphoenolpyruvate translocator
SWI/SNF and RSC chromatin remodeling complex protein
Predicted homolog of the Saccharomyces cerevisiae SWI3 and RSC8 proteins
Predicted protein arginine N-methyltransferase similar to human PRMT3. ChromDB ID: PRMT20104
Has RING, Phd and BAH, or Bromo Adjacent Homology domains, a plant-specific sub-family with unknown function
has FtsZ and COG4642; FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes
likely; has FPG_CAT, Fapy_DNA_glyco and H2TH domains; expressed
calcium-dependent cytoplasmic cysteine proteinase, papain-like protein
Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
distantly related to glycosyltransferases; unknown protein
Predicted bromodomain protein with an AAA ATPase domain. ChromDB ID: BRAT20101; containing AAA ATPase domain
wd-40 repeat family protein/notchless protein
NLE (NUC135) domain. This domain is located N terminal to WD40 repeats. It is found in the microtubule-associated yeast protein YTM1.
semiconserved uncharacterized protein cupA58
SNF2 family DNA-dependent ATPase similar to transcription-coupled repair nucleotide excision repair proteins like Saccharomyces cerevisiae RAD26 ChromDB ID: CHR20127; Snf2, Ris1, Rad26 superclasses
protein-s-isoprenylcysteine o-methyltransferase
belongs to the isoprenylcysteine carboxyl methyltransferase protein family; part of the steroid oxidoreductase superfamily
fad-dependent pyridine nucleotide-disulphide oxidoreductase
condensin complex component, non-smc subunit
Non-SMC condensin subunit predicted homolog of Schizosaccharomyces pombe Cnd1 protein. ChromDB ID: CPD20101; Cnd1 homolog
LHCII related chl a/b binding protein - however phylogenetic methods should be used to determine type.
CAB/ELIP/HLIP superfamily of proteins; ChloroP predicts 43 aa cTP but TargetP predicts 9 aa Mitochondrial, signalP gives 28 aa cTP; expressed; putatively chloroplast targeted
sodium ion:calcium ion+potassium ion antiporter
photosystem I reaction center subunit IV, chloroplast precursor
Also known as PSI E; Photosystem I reaction center subunit IV, chloroplast [Precursor] - ChloroP and TargetP predict 36 aa cTP
isocitrate dehydrogenase (NADP+), bacteria-like protein
oxalosuccinate decarboxylase; isocitrate dehydrogenase (NADP); oxalsuccinic decarboxylase; isocitrate + NADP+ = 2-oxoglutarate + CO2 + NADPH; SignalP predicts a 20aa peptide
Encodes a protein with hydroxyproline-rich glycoprotein (HRGP) motifs
expressed; putative uncharacterized protein
has domain Importin-beta N-terminal domain; expressed
cysteine synthetase/pyridoxal dependent decarboxylase
Has two domains. At N term has cysteine synthase A, At C term has Pyridoxal-dependent decarboxylase conserved domain
Nucleosome/chromatin assembly complex protein
Predicted homolog of human CAF1 subunit B or yeast CAC2, the p60 subunit s of human and yeast chromatin assembly factor I, respectively
small conductance mechanosensitive ion channel family
small-conductance mechanosensitive ion channel
H+-or Na+-translocating f-type, v-type and A-type ATPase superfamily
equilibrative nucleoside transporter family
Predicted SET domain containing protein. ChromDB ID: SDG20113
candidate oligosaccharyl transferase STT3 subunit
Autophagy protein Apg9. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. Autophagy is a bulk degradation process induced by starvation in eukaryotic cells
Similar to a protein kinase from Chlamy whose phosphorylation is regulated by genetic adhesion during Chlamydomonas fertilization.
myristoyl-CoA:protein n-myristoyltransferase
WD40 PLAT repeat protein of unknown function
expressed; conserved uncharacterized protein cupA57
DEAD/DEAH box helicase, Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids
inosine-uridine preferring nucleoside hydrolase
Encodes a protein with hydroxyproline-rich glycoprotein (HRGP) motifs at N-terminus
Predicted protein similar to yeast SWC4 (a component of the Swr1p complex that incorporates Htz1p into chromatin and acomponent of the NuA4 histone acetyltransferase complex) and animal proteins in the DNA methyltransferase 1 associated protein 1 (DMAP1) protein group
Encodes a GATA-like transcription factor.
mitochondrial protein translocase family
inner membrane translocase (import) Tim22
expressed; conserved uncharacterized protein
Encodes a prasinophyte-specific RWP-RK family transcription factor.
expressed putative uncharacterized protein
Belongs to the short-chain dehydrogenases/reductases (SDR) family
bifunctional dihydrofolate reductase-thymidylate synthase
Includes: Dihydrofolate reductase; Thymidylate synthase ] [THY]
by similarity would suggest this is U1 small nuclear ribonucleoprotein 70 kDa; has RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Encode a protein containing RNP-1 domain with C-terminal hydroxyproline-rich glycoprotein (HRGP) motifs
Multidrug/Oligosaccharidyl-lipid/Polysaccharide flippase
DUF221 containing conserved uncharacterized protein
Predicted chromatin remodeling protein similar to Saccharomyces cerevisiae RDH54, a DNA-dependent ATPase which stimulates strand exchange by modifying the topology of double-stranded DNA. ChromDB ID: CHR20107; Snf2, Ris1, Rad26 superclasses
ubiquinol-cytochrome C reductase complex 14 kDa protein
ubiquinol:cytochrome c oxidoreductase 14 kDa subunit-containing protein
has COG2329 - uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides; also has UCR_14kD Ubiquinol-cytochrome C reductase complex 14kD subunit
Mpv17 / PMP22 family. The 22-kDa peroxisomal membrane protein (PMP22) is a major component of peroxisomal membranes
has ADK domain; ChloroP predicts 62 aa cTP
Predicted Class II RPD3 type histone deacetylase protein. ChromDB ID: HDA20102; Rpd3/HDA1 superfamily
related to peptidoglycan lytic transglycosylases
pfam00849: PseudoU_synth_2, RNA pseudouridylate synthase. Members of this family are involved in modifying bases in RNA molecules. They carry out the conversion of uracil bases to pseudouridine
pfam00023, Ank, Ankyrin repeat. There is no clear separation between noise and signal on the HMM search Ankyrin repeats generally consist of a beta, alpha, alpha, beta order of secondary structures
pfam 02450: Lecithin:cholesterol acyltransferase INTERPRO [IPR003386] Lecithin:cholesterol acyltransferase (LACT) also known as phosphatidylcholine-sterol acyltransferase (), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol
glyceraldehyde 3-phosphate dehydrogenase
Regulates flagellar length in Chlamydomonas
hyperpolarization activated cyclic nucleotide-gated potassium ion channel
chlorophyll a/b-binding protein, psi-associated, chloroplast precursor
Possesses an ANK repeat domain. Ankyrin repeats (ANK) are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes
Histone H3, core histone required for chromatin assembly and chromosome function. ChromDB ID: HTR20105
Predicted SET domain containing protein. ChromDB ID: SDG20112
Putative methytransferase. Possible Sec Codon in frame with SECIS element detected in 3'UTR using SECISearch with O filter removed. Sequence _GUGAC_GA_GCGAC_ and score of 12.73
related to Dol-P-Man: a-mannosyltransferases
glucose-6-phosphate:phosphate translocator
resistance-nodulation-cell division superfamily
Dispatched segment polarity protein (cholesterol release)
Has domain for tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]. COG7476
Has YXKO-related domain. B.subtilis YXKO protein of unknown function and related proteins
cupC2, conserved uncharacterized protein
now transferred to; acetyl-CoA + H2O + oxaloacetate = citrate + CoA
. Protein folding and unfolding provides thermotolerance to cell on exposure to heat stress.
Betaine/Carnitine/Choline transporter family
glycine betaine/carnitine/choline; Alternative splicing variant 1
Predicted histone H3 lysine 36 histone methyltransferase. ChromDB ID: SDG20122
deoxyuridine 5'-triphosphate nucleotidohydrolase
Synonyms: ODA15 ODA-LC7a Roadblock-like outer arm dynein light chain
potassium/sodium hyperpolarization-activated cyclic nucleotide-gated ion channel
Predicted chromatin remodeling protein in the Arabidopsis DDM1 subgroup of SNF2 superfamily chromatin remodeling proteins.involved in the maintenance of DNA methylation. ChromDB ID: CHR20106; Snf2, Ris1, Rad26 superclasses