Vibrio gigantis strain ACE001 plasmid unnamed, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.
A Vibrio gigantis strain with algicidal activity against Karenia mikimotoi
Submitted (16-FEB-2022) Fisheries College, Jimei University, Yindou Road, Xiamen 361021, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP092386.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: FALCON v. v0.3.0\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 330.3x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/14/2023 11:14:59\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,775\nCDSs (total) :: 4,591\nGenes (coding) :: 4,539\nCDSs (with protein) :: 4,539\nGenes (RNA) :: 184\nrRNAs :: 15, 14, 14 (5S, 16S, 23S)\ncomplete rRNAs :: 15, 14, 14 (5S, 16S, 23S)\ntRNAs :: 137\nncRNAs :: 4\nPseudo Genes (total) :: 52\nCDSs (without protein) :: 52\nPseudo Genes (ambiguous residues) :: 0 of 52\nPseudo Genes (frameshifted) :: 40 of 52\nPseudo Genes (incomplete) :: 9 of 52\nPseudo Genes (internal stop) :: 11 of 52\nPseudo Genes (multiple problems) :: 7 of 52\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_017055776.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017055775.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005201511.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012532945.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013579.2
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012533763.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014442.2
COORDINATES: similar to AA sequence:RefSeq:WP_016797447.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016797446.1
type IV toxin-antitoxin system AbiEi family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_017055769.1
COORDINATES: similar to AA sequence:RefSeq:WP_016767810.1
COORDINATES: protein motif:HMM:NF025639.2
COORDINATES: similar to AA sequence:RefSeq:WP_017055766.1
COORDINATES: similar to AA sequence:RefSeq:WP_017101741.1
COORDINATES: similar to AA sequence:RefSeq:WP_017097178.1
COORDINATES: similar to AA sequence:RefSeq:WP_017061977.1
COORDINATES: similar to AA sequence:RefSeq:WP_017061976.1
COORDINATES: similar to AA sequence:RefSeq:WP_017097181.1
COORDINATES: similar to AA sequence:RefSeq:WP_016768695.1
COORDINATES: similar to AA sequence:RefSeq:WP_017061974.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF024783.2
COORDINATES: similar to AA sequence:RefSeq:WP_005452142.1
COORDINATES: protein motif:HMM:NF021508.2