Natrinema gelatinilyticum strain BND6 plasmid unnamed2, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.
Diverse halophilic archaea isolated from saline environments
Submitted (29-JUN-2022) School of Food and Biological Engineering, Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP100758.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SOAPdenovo v. March-2021\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 453.0x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/09/2023 15:04:13\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,331\nCDSs (total) :: 5,275\nGenes (coding) :: 4,943\nCDSs (with protein) :: 4,943\nGenes (RNA) :: 56\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 2\nPseudo Genes (total) :: 332\nCDSs (without protein) :: 332\nPseudo Genes (ambiguous residues) :: 0 of 332\nPseudo Genes (frameshifted) :: 150 of 332\nPseudo Genes (incomplete) :: 239 of 332\nPseudo Genes (internal stop) :: 100 of 332\nPseudo Genes (multiple problems) :: 122 of 332\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Natrinema gelatinilyticum
COORDINATES: similar to AA sequence:RefSeq:WP_006065891.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007143119.1
COORDINATES: similar to AA sequence:RefSeq:WP_006092954.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004516401.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035018.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008421725.1
COORDINATES: similar to AA sequence:RefSeq:WP_006186975.1
COORDINATES: similar to AA sequence:RefSeq:WP_014030823.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612197.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015298774.1
COORDINATES: similar to AA sequence:RefSeq:WP_015233380.1
COORDINATES: similar to AA sequence:RefSeq:WP_004516282.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_008015202.1
COORDINATES: similar to AA sequence:RefSeq:WP_004062100.1
COORDINATES: similar to AA sequence:RefSeq:WP_014865572.1
COORDINATES: similar to AA sequence:RefSeq:WP_008015212.1
COORDINATES: protein motif:HMM:NF022633.2
COORDINATES: similar to AA sequence:RefSeq:WP_008313922.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182381.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF013964.2
GO:0004519 - endonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015408669.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035120.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053535.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011323646.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014442.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011572478.1
COORDINATES: similar to AA sequence:RefSeq:WP_012289605.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009488151.1
transcription initiation factor IIB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006186971.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035672.1
COORDINATES: similar to AA sequence:RefSeq:WP_008006532.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053528.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053527.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094360.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035587.1
type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008015132.1
COORDINATES: similar to AA sequence:RefSeq:WP_008015233.1
COORDINATES: similar to AA sequence:RefSeq:WP_008015234.1
COORDINATES: similar to AA sequence:RefSeq:WP_005042091.1
COORDINATES: similar to AA sequence:RefSeq:WP_008415288.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043301.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009761870.1
GO:0006817 - phosphate ion transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008014762.1
COORDINATES: similar to AA sequence:RefSeq:WP_008015252.1
COORDINATES: similar to AA sequence:RefSeq:WP_006066862.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006182395.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182483.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015310276.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183536.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053352.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006186982.1
COORDINATES: similar to AA sequence:RefSeq:WP_008010094.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825667.1
COORDINATES: protein motif:HMM:NF036688.2
COORDINATES: similar to AA sequence:RefSeq:WP_004061517.1
COORDINATES: similar to AA sequence:RefSeq:WP_008014847.1
COORDINATES: similar to AA sequence:RefSeq:WP_008014615.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013875869.1
COORDINATES: similar to AA sequence:RefSeq:WP_007108991.1
COORDINATES: similar to AA sequence:RefSeq:WP_006181071.1
sugar-specific transcriptional regulator TrmB
COORDINATES: similar to AA sequence:RefSeq:WP_008015075.1
COORDINATES: similar to AA sequence:RefSeq:WP_006181070.1
COORDINATES: protein motif:HMM:NF013125.2
COORDINATES: similar to AA sequence:RefSeq:WP_006652324.1
GO:0030420 - establishment of competence for transformation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006181068.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035025.1
COORDINATES: similar to AA sequence:RefSeq:WP_011324502.1
COORDINATES: similar to AA sequence:RefSeq:WP_015310294.1
COORDINATES: similar to AA sequence:RefSeq:WP_015310295.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008014500.1
COORDINATES: similar to AA sequence:RefSeq:WP_006431784.1
COORDINATES: similar to AA sequence:RefSeq:WP_006181057.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182428.1
COORDINATES: similar to AA sequence:RefSeq:WP_006181055.1
COORDINATES: similar to AA sequence:RefSeq:WP_005533600.1
COORDINATES: similar to AA sequence:RefSeq:WP_005307445.1
GO:0008703 - 5-amino-6-(5-phosphoribosylamino)uracil reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007742714.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612288.1
COORDINATES: similar to AA sequence:RefSeq:WP_008164826.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035031.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024954.2
COORDINATES: protein motif:HMM:NF033545.0
COORDINATES: protein motif:HMM:TIGR00035.1
GO:0047689 - aspartate racemase activity [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007691995.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007691994.1
putative sulfate exporter family transporter
COORDINATES: protein motif:HMM:NF014085.2
COORDINATES: similar to AA sequence:RefSeq:WP_004594920.1
GO:0019239 - deaminase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013035688.1
COORDINATES: similar to AA sequence:RefSeq:WP_004217150.1
GO:0003824 - catalytic activity [Evidence IEA]
GO:0042823 - pyridoxal phosphate biosynthetic process [Evidence IEA]
pyridoxal 5'-phosphate synthase lyase subunit PdxS
COORDINATES: protein motif:HMM:NF013757.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF006050.0
COORDINATES: similar to AA sequence:RefSeq:WP_005041497.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611721.1
COORDINATES: similar to AA sequence:RefSeq:WP_012289081.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015233736.1
COORDINATES: similar to AA sequence:RefSeq:WP_008528742.1
COORDINATES: protein motif:HMM:NF015445.2
GO:0055085 - transmembrane transport [Evidence IEA]
TRAP transporter substrate-binding protein DctP
COORDINATES: protein motif:HMM:NF016200.2
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0015740 - C4-dicarboxylate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013875941.1
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF013584.2
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015233907.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: protein motif:HMM:NF024940.2
COORDINATES: similar to AA sequence:RefSeq:WP_012945410.1
COORDINATES: protein motif:HMM:NF014795.2
GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007690516.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667651.1
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: protein motif:HMM:NF024771.2
COORDINATES: similar to AA sequence:RefSeq:WP_007107553.1
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006106839.1
GO:0009436 - glyoxylate catabolic process [Evidence IEA]; GO:0071704 - organic substance metabolic process [Evidence IEA]
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008385396.1
COORDINATES: similar to AA sequence:RefSeq:WP_008317867.1
COORDINATES: similar to AA sequence:RefSeq:WP_004041059.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024808.2
COORDINATES: protein motif:HMM:NF012738.2
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF025092.2
carboxypeptidase-like regulatory domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004216286.1
GO:0047420 - N-acyl-D-amino-acid deacylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012945871.1
COORDINATES: similar to AA sequence:RefSeq:WP_008385428.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013706.2
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006667638.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011563745.1
GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: protein motif:HMM:NF019845.2
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008308127.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006087877.1
COORDINATES: protein motif:HMM:NF012596.2
enoyl-CoA hydratase/isomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006884056.1
COORDINATES: similar to AA sequence:RefSeq:WP_007979394.1
COORDINATES: similar to AA sequence:RefSeq:WP_011321988.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF014564.2
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012945131.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_014555843.1
COORDINATES: similar to AA sequence:RefSeq:WP_006666995.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890501.1
COORDINATES: similar to AA sequence:RefSeq:WP_015763500.1
COORDINATES: similar to AA sequence:RefSeq:WP_014030722.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008457963.1