Natrinema caseinilyticum strain ZJ2 plasmid unnamed2, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.
Diverse halophilic archaea isolated from saline environments
Submitted (29-JUN-2022) School of Food and Biological Engineering, Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP100447.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SOAPdenovo v. May-2021\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 1986.0x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/09/2023 14:48:05\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,639\nCDSs (total) :: 4,582\nGenes (coding) :: 4,430\nCDSs (with protein) :: 4,430\nGenes (RNA) :: 57\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 2\nPseudo Genes (total) :: 152\nCDSs (without protein) :: 152\nPseudo Genes (ambiguous residues) :: 0 of 152\nPseudo Genes (frameshifted) :: 69 of 152\nPseudo Genes (incomplete) :: 96 of 152\nPseudo Genes (internal stop) :: 32 of 152\nPseudo Genes (multiple problems) :: 39 of 152\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_007538712.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014053216.1
COORDINATES: similar to AA sequence:RefSeq:WP_007190718.1
COORDINATES: similar to AA sequence:RefSeq:WP_008308298.1
BREX-5 system adenine-specific DNA-methyltransferase PglX
COORDINATES: similar to AA sequence:RefSeq:WP_014053210.1
COORDINATES: similar to AA sequence:RefSeq:WP_008387701.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053208.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053207.1
COORDINATES: similar to AA sequence:RefSeq:WP_010546872.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458668.1
COORDINATES: similar to AA sequence:RefSeq:WP_006826454.1
COORDINATES: similar to AA sequence:RefSeq:WP_007538655.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_007538653.1
COORDINATES: protein motif:HMM:NF021622.2
COORDINATES: protein motif:HMM:NF012234.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007538641.1
COORDINATES: similar to AA sequence:RefSeq:WP_007538808.1
COORDINATES: protein motif:HMM:NF014036.2
COORDINATES: similar to AA sequence:RefSeq:WP_008451803.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007538792.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0042578 - phosphoric ester hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007538790.1
COORDINATES: protein motif:HMM:NF005553.0
COORDINATES: similar to AA sequence:RefSeq:WP_008605512.1
COORDINATES: similar to AA sequence:RefSeq:WP_014040852.1
COORDINATES: protein motif:HMM:NF019876.2
COORDINATES: protein motif:HMM:NF012600.2
transcription initiation factor IIB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008524782.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488254.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043378.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007696197.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006649179.1
COORDINATES: similar to AA sequence:RefSeq:WP_007696895.1
COORDINATES: protein motif:HMM:NF002222.0
COORDINATES: protein motif:HMM:NF040013.1
COORDINATES: similar to AA sequence:RefSeq:WP_007737655.1
COORDINATES: similar to AA sequence:RefSeq:WP_007538741.1
COORDINATES: similar to AA sequence:RefSeq:WP_015299319.1
COORDINATES: protein motif:HMM:TIGR02391.1
COORDINATES: protein motif:HMM:NF013594.2
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012321.2
COORDINATES: similar to AA sequence:RefSeq:WP_006054143.1
COORDINATES: similar to AA sequence:RefSeq:WP_008443300.1
COORDINATES: similar to AA sequence:RefSeq:WP_007538724.1
COORDINATES: similar to AA sequence:RefSeq:WP_007538723.1
phage integrase SAM-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007538722.1
COORDINATES: similar to AA sequence:RefSeq:WP_008457963.1
COORDINATES: protein motif:HMM:NF016366.2