Mycoplasmopsis bovirhinis strain NCTC10118 plasmid 2.
type: Entry
definition: Mycoplasmopsis bovirhinis strain NCTC10118 plasmid 2.
sequence version: NZ_LR214973.1
sequence date: 2022-12-13
sequence: sequence
division: CON
label: NZ_LR214973.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMEA4412696
keyword: RefSeq
source: Mycoplasmopsis bovirhinis (Mycoplasma bovirhinis)
organism: Mycoplasmopsis bovirhinis
taxonomy: Bacteria; Tenericutes; Mollicutes; Mycoplasmataceae; Mycoplasmopsis.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nLR214973.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/13/2022 06:03:13\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 787\nCDSs (total) :: 745\nGenes (coding) :: 742\nCDSs (with protein) :: 742\nGenes (RNA) :: 42\nrRNAs :: 2, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 3, 3 (5S, 16S, 23S)\ntRNAs :: 31\nncRNAs :: 3\nPseudo Genes (total) :: 3\nCDSs (without protein) :: 3\nPseudo Genes (ambiguous residues) :: 0 of 3\nPseudo Genes (frameshifted) :: 1 of 3\nPseudo Genes (incomplete) :: 3 of 3\nPseudo Genes (internal stop) :: 0 of 3\nPseudo Genes (multiple problems) :: 1 of 3\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000155
sequence length: 20071
topology: linear
so has quality: SO_0000987
location: 1..20071
location: region:1-20071:1
RO_0002162: 29553

NZ_LR214973
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMEA4412696
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
journal: Submitted (24-JAN-2019) WTSI, Pathogen Informatics, Wellcome Trust Sanger Institute, CB10 1SA, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition
type: FuzzyPosition

position:20071:1
position: 20071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-20071:1:source
so part of: sequence
organism: Mycoplasmopsis bovirhinis
mol type: genomic DNA
strain: NCTC10118
serovar: not available: to be reported later
isolation source: Respiratory Tract
host: Bovine
culture collection: NCTC:10118
type material: type strain of Mycoplasma bovirhinis
plasmid: 2
collection date: 1900/1967

29553
type: Taxonomy
SIO_000068: taxonomy

EXC44_RS03775
type: Gene
subclass of: SO_0000704
RO_0002162: 29553
gene: fusA
locus tag: EXC44_RS03775
pseudo: true
so part of: sequence
location: <1..851
location: region:1-851:1
so has part: feature:1-851:1:exon
subclass of: SO_0000010

position:851:1
position: 851
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-851:1:exon

EXC44_RS03775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29553
gene: fusA
locus tag: EXC44_RS03775
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011283211.1
note: EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; frameshifted; incomplete; too short partial abutting assembly gap; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 2
transl table: 4
product: elongation factor G
SIO_010081: EXC44_RS03775
subclass of: SO_0000673
so part of: EXC44_RS03775
location: <1..851
location: region:1-851:1
so has part: feature:1-851:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1-851:1:exon

EXC44_RS03940
type: Gene
subclass of: SO_0000704
RO_0002162: 29553
locus tag: EXC44_RS03940
old locus tag: NCTC10118_00761
so part of: sequence
location: 1005..1163
location: region:1005-1163:1
so has part: feature:1005-1163:1:exon
subclass of: SO_0000010

position:1005:1
position: 1005
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1163:1
position: 1163
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1005-1163:1:exon

EXC44_RS03940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29553
locus tag: EXC44_RS03940
old locus tag: NCTC10118_00761
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MKRSKFLLISTNLVAISSFAMISCASVEKPQKPDQPSPQPQPDPSEIAVNNF
SIO_010081: EXC44_RS03940
subclass of: SO_0000673
so part of: EXC44_RS03940
location: 1005..1163
location: region:1005-1163:1
so has part: feature:1005-1163:1:exon

WP_165001853.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1005-1163:1:exon

EXC44_RS03780
type: Gene
subclass of: SO_0000704
RO_0002162: 29553
locus tag: EXC44_RS03780
old locus tag: NCTC10118_00762
so part of: sequence
location: 1217..1477
location: region:1217-1477:1
so has part: feature:1217-1477:1:exon
subclass of: SO_0000010

position:1217:1
position: 1217
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1477:1
position: 1477
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1217-1477:1:exon

EXC44_RS03780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29553
locus tag: EXC44_RS03780
old locus tag: NCTC10118_00762
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MKIVVNVALNAFSLLEDNVKQLLTAEKSLLDDLLAKIAEIKQSQTNETNLPGENLGSQKQPSNNDSEINDPDTDNDKNNQNNSGQT
SIO_010081: EXC44_RS03780
subclass of: SO_0000673
so part of: EXC44_RS03780
location: 1217..1477
location: region:1217-1477:1
so has part: feature:1217-1477:1:exon

WP_129621904.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1217-1477:1:exon

EXC44_RS03785
type: Gene
subclass of: SO_0000704
RO_0002162: 29553
locus tag: EXC44_RS03785
old locus tag: NCTC10118_00763
so part of: sequence
location: 1507..1710
location: region:1507-1710:1
so has part: feature:1507-1710:1:exon
subclass of: SO_0000010

position:1507:1
position: 1507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1710:1
position: 1710
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1507-1710:1:exon

EXC44_RS03785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29553
locus tag: EXC44_RS03785
old locus tag: NCTC10118_00763
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MIQEQPNQKSLEQEKVVINKFLPISEGERYFSSLNSQEKQKELNELNYILYEDLNKVEQKSYNGLSY
SIO_010081: EXC44_RS03785
subclass of: SO_0000673
so part of: EXC44_RS03785
location: 1507..1710
location: region:1507-1710:1
so has part: feature:1507-1710:1:exon

WP_129621905.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1507-1710:1:exon

EXC44_RS03790
type: Gene
subclass of: SO_0000704
RO_0002162: 29553
locus tag: EXC44_RS03790
old locus tag: NCTC10118_00764
so part of: sequence
location: 2044..2685
location: region:2044-2685:1
so has part: feature:2044-2685:1:exon
subclass of: SO_0000010

position:2044:1
position: 2044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2685:1
position: 2685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2044-2685:1:exon

EXC44_RS03790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29553
locus tag: EXC44_RS03790
old locus tag: NCTC10118_00764
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MTYAETWLIEGNKLNVTDQEAKGINQMKTTELYYNPAANFGHQGHSHGQRQFWNSYFVSNFYNLLSYDVPQKGYLSDEVLDKLNIKNKENLLYNNLSINDMWRLANELNTPEHLKNKSQSQTLSVSPSGVYTTSINRLKYTFSMTELVPREYTKYAYESYFSINDLNKSEQRHDARQSTVNWFGLRYYTQNQNNQWMVFFYPVIIPKIDHIHI
SIO_010081: EXC44_RS03790
subclass of: SO_0000673
so part of: EXC44_RS03790
location: 2044..2685
location: region:2044-2685:1
so has part: feature:2044-2685:1:exon

WP_129621906.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2044-2685:1:exon

EXC44_RS03795
type: Gene
subclass of: SO_0000704
RO_0002162: 29553
locus tag: EXC44_RS03795
old locus tag: NCTC10118_00765
so part of: sequence
location: 2628..3488
location: region:2628-3488:1
so has part: feature:2628-3488:1:exon
subclass of: SO_0000010

position:2628:1
position: 2628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3488:1
position: 3488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2628-3488:1:exon

EXC44_RS03795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29553
locus tag: EXC44_RS03795
old locus tag: NCTC10118_00765
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MNGVFLSSHNTEDWSHTYLNNFDSLTARYWFDKLGNGLDNPTKHNVAIMPNSVFEINEFRFKNEGSESEIGELAPEKTRSRSKEFYKLFLDTMGYGKTISQVFYRSDVTDGQPGYGAGVVGWPDRLKFSAFIDANHKVDGLVIKDANGEYKHSLLEYSNSFNFFGLQNFDQGANLYSEDDKGEKIVTEDRQKQISNRLYPNNIGYNNYLSYITKDFLEVKENSEVYLWTDLNKDGKVTENELNSSQITLPTQRPVTNQRNTNHNVSNFDKFIIKNIDGKTIVKKLY
SIO_010081: EXC44_RS03795
subclass of: SO_0000673
so part of: EXC44_RS03795
location: 2628..3488
location: region:2628-3488:1
so has part: feature:2628-3488:1:exon

WP_129621907.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2628-3488:1:exon

EXC44_RS03800
type: Gene
subclass of: SO_0000704
RO_0002162: 29553
locus tag: EXC44_RS03800
old locus tag: NCTC10118_00766
so part of: sequence
location: 3599..4210
location: region:3599-4210:1
so has part: feature:3599-4210:1:exon
subclass of: SO_0000010

position:3599:1
position: 3599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4210:1
position: 4210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3599-4210:1:exon

EXC44_RS03800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29553
locus tag: EXC44_RS03800
old locus tag: NCTC10118_00766
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MKNLEKYICVFDKYRKENKYQHFKIEEDHNTILKMQGALETQRKLRTSQIDLEQLYNILQELSEGFSIQEVAKIFDRDIRSIKSKIEIITNRRPLSLDKHNRYVCPKCLKRVMSVKTLNFAKLYEHLLGYSFSRLFFLSDAIKEKWKAYRKYWYSELNTYNKNRNKKNLVQKEVKKSVTYLVNSFKKKYHLMNLLPHLVQFIK
SIO_010081: EXC44_RS03800
subclass of: SO_0000673
so part of: EXC44_RS03800
location: 3599..4210
location: region:3599-4210:1
so has part: feature:3599-4210:1:exon

WP_129621448.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3599-4210:1:exon

EXC44_RS03805
type: Gene
subclass of: SO_0000704
RO_0002162: 29553
locus tag: EXC44_RS03805
so part of: sequence
location: 4210..4785
location: region:4210-4785:1
so has part: feature:4210-4785:1:exon
subclass of: SO_0000010

position:4785:1
position: 4785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4210-4785:1:exon

EXC44_RS03805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29553
locus tag: EXC44_RS03805
inference: COORDINATES: protein motif:HMM:NF033563.0
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: IS30 family transposase
translation: MKKYPYFLEFDHIVKKSEGKYGTRKQKQTKPKTLKYATEISKRPDYINDRLEHGHFELDTVIGKINDTYCIVTIIERQTRMSYAMLSKRNSKAIKQTLLKLIKKHSLDIKTLTVDNGSENVLLHHVIPTERLFKCQPYSSWQKGSIENMHRLIRYYIPKGKSFDKYSQHGIDYMMDKINNYRQVVRQYKIT
SIO_010081: EXC44_RS03805
subclass of: SO_0000673
so part of: EXC44_RS03805
location: 4210..4785
location: region:4210-4785:1
so has part: feature:4210-4785:1:exon

WP_235666100.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4210-4785:1:exon

EXC44_RS03810
type: Gene
subclass of: SO_0000704
RO_0002162: 29553
locus tag: EXC44_RS03810
old locus tag: NCTC10118_00768
so part of: sequence
location: complement(5499..8609)
location: region:5499-8609:-1
so has part: feature:5499-8609:-1:exon
subclass of: SO_0000010

position:5499:-1
position: 5499
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8609:-1
position: 8609
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5499-8609:-1:exon

EXC44_RS03810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29553
locus tag: EXC44_RS03810
old locus tag: NCTC10118_00768
inference: COORDINATES: protein motif:HMM:TIGR00348.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: type I restriction endonuclease subunit R
translation: MLKEKDIEISIISLLEQKGYQWITIDNDHWIQTRNLDDFINESLLRDSLIKINKINDHNVIQEAINSIKNLDNPSLFERNYAFHKILVDGITIESKDFLVNPLIRFVDFTNPENNTFQVANQVKFQEGQKMRIPDVIIYINGIPLIVMELKSFNEDAQEATLEHAYAQLGSNSEHDGYRYDIPTLFNYNSFLVISDGIDTKVGTLTSKIDRYNEWKSVSGEKGYNDDYINKIDVFINGLFDKNRLIDIIKNNIFYIIDKNDKPIKIMAQYHQYFGVNKALNSIIKTVKPNGNGKAGIIWHTQGSGKSFSMVMLAHKLLIEKELNVPTIVLLTDRIDLDIQLYKTFFSAKDYLKCEPVIASSREDLVKKLSNIKQGGIILSTIAKFDKEHLPKNERNNIIVMADEAHRGHYGIYETVSYEKNAETEEMEAIFKYGVEKYIRDALPNATFIGFTGTPVSTKTKQTTDIFGEIIDAYDMTQSIIDGSTVKLYYESRLAKVWTNDEVLKEIDQYYKDLENTQQADTKSIERSKNEMSKIKQILEDHDMIKVFASDIIEHYENRKGIINGKAMIICQTRIAASKLYKEIISEYPAYKDSAILVVTESNKDPEELRKLFGNNALRKELGDEFKKDTSRYKIAIVCDMWLTGFDVPDLEVMYFIKRLKSYNLMQAIARVNRVYPGKSSGLIVDYIGLNSALEEALDQYTIRDKENNIQDIKNEIYNVIKEKLSILNEWFYKIPKDKFWANDSLTRFRAIQEGAQFILEDKTRREDPFMFDLSFSLKQAFVVCAGIVTKQERKEILYYLAIRSYILKLRNKPGIVSTKEMNEHVSQLLAEAIKGDEVRSLTAEQKSDFNAIELLSKEKIDQLRKSNPPHIFVEIVKKLLERAIAESRKHNYFKSQEYSKRLRRILEEYHGRGASFTPALTILQLTDFASEMVADEYEAQKLGVFGRERAFYDALARDKNAQELLGDDTLILIARELKEVVEEYALTDWAAKESTRSQMRIKIKECLKKYNYPPQYQILAIKDVIKQAEYIMLED
SIO_010081: EXC44_RS03810
subclass of: SO_0000673
so part of: EXC44_RS03810
location: complement(5499..8609)
location: region:5499-8609:-1
so has part: feature:5499-8609:-1:exon

WP_129621444.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5499-8609:-1:exon

EXC44_RS03815
type: Gene
subclass of: SO_0000704
RO_0002162: 29553
locus tag: EXC44_RS03815
old locus tag: NCTC10118_00769
so part of: sequence
location: 8778..9419
location: region:8778-9419:1
so has part: feature:8778-9419:1:exon
subclass of: SO_0000010

position:8778:1
position: 8778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9419:1
position: 9419
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8778-9419:1:exon

EXC44_RS03815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29553
locus tag: EXC44_RS03815
old locus tag: NCTC10118_00769
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MDDLIENYQGRIKIICKILSASLKQFREKTFIKYYDPQIIKSGIDKFDNTKIYIDTSKVDGINTISGGDLITYENKPSRANMKPIKNSVWFAKMKDSSKKIIVTSYDLDLVKNTIFSTGFLGISESTKLPISLLSAIIISDDFNTQRDLNSVGTTMAGINNETFLKILVPKLYENQIEEYDKKYKSFIYELSLLRQKINKLKQIKQQLLNKYF
SIO_010081: EXC44_RS03815
subclass of: SO_0000673
so part of: EXC44_RS03815
location: 8778..9419
location: region:8778-9419:1
so has part: feature:8778-9419:1:exon

WP_165001854.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8778-9419:1:exon

EXC44_RS03820
type: Gene
subclass of: SO_0000704
RO_0002162: 29553
locus tag: EXC44_RS03820
old locus tag: NCTC10118_00770
so part of: sequence
location: 9451..10251
location: region:9451-10251:1
so has part: feature:9451-10251:1:exon
subclass of: SO_0000010

position:9451:1
position: 9451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10251:1
position: 10251
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9451-10251:1:exon

EXC44_RS03820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29553
locus tag: EXC44_RS03820
old locus tag: NCTC10118_00770
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000651177.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: tyrosine-type recombinase/integrase
translation: MKDFKTFLLHQNLSKNTIDSYQFSLDLYFKYFDEITKQNLLAFKALLVDNYKGKTVNLRIQGINKYLEYINKEKLKLKFIKLQQTSYLENVISDADYEFLKNKLLKDQNYEWYFIVRFLGATGARVSELIQFKYEHLKRGYIDLYTKSGKIRRIFIPKKLRIKAIEYYDSVDRDTGYLFLNKTKKQITTRGLSHQLKVLAKKYKMNLNVVYPHSFRHRFAKNFLEKRKDISLLADLMGHESIETTRIYLRKTSEEQQAIVDKIVDW
SIO_010081: EXC44_RS03820
subclass of: SO_0000673
so part of: EXC44_RS03820
location: 9451..10251
location: region:9451-10251:1
so has part: feature:9451-10251:1:exon

WP_129621434.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9451-10251:1:exon

EXC44_RS03825
type: Gene
subclass of: SO_0000704
RO_0002162: 29553
locus tag: EXC44_RS03825
old locus tag: NCTC10118_00771
so part of: sequence
location: complement(10343..10783)
location: region:10343-10783:-1
so has part: feature:10343-10783:-1:exon
subclass of: SO_0000010

position:10343:-1
position: 10343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10783:-1
position: 10783
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10343-10783:-1:exon

EXC44_RS03825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29553
locus tag: EXC44_RS03825
old locus tag: NCTC10118_00771
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MNEIKKLYPLTNIVQFQKGFEVGSSKYSETKNPGQINYIRVGDLKSLGNTFVDTLNNYTYADFEDILVTFDGAPGRNNIDLVGAYSSGIDKLICLNEDKGLVFFEINSKINKQIIDIHTYGTTIKHASKSINFLVYANVDHKENKY
SIO_010081: EXC44_RS03825
subclass of: SO_0000673
so part of: EXC44_RS03825
location: complement(10343..10783)
location: region:10343-10783:-1
so has part: feature:10343-10783:-1:exon

WP_129621436.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10343-10783:-1:exon

EXC44_RS03830
type: Gene
subclass of: SO_0000704
RO_0002162: 29553
locus tag: EXC44_RS03830
old locus tag: NCTC10118_00772
so part of: sequence
location: complement(10814..11383)
location: region:10814-11383:-1
so has part: feature:10814-11383:-1:exon
subclass of: SO_0000010

position:10814:-1
position: 10814
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11383:-1
position: 11383
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10814-11383:-1:exon

EXC44_RS03830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29553
locus tag: EXC44_RS03830
old locus tag: NCTC10118_00772
EC number: 3.1.21.-
inference: COORDINATES: protein motif:HMM:NF013579.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006304 - DNA modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: restriction endonuclease subunit S
translation: MIEFNNRIIDKLSIYSDLIYKDYLNRAHNNLSAKLGDYSEIKTGKINVNSAVENGKYPFFTCGSECLYIDDYAYNCKAIIISGNGVISCKYYDGKFNAYQRTYVLTPKKYFYLFQKACEFETNNLNINSSGSVIKFITKSMIEQISITLNDYSIITDDRIARIYNLISKYKQKNIVLQKIKQHLLNKYF
SIO_010081: EXC44_RS03830
subclass of: SO_0000673
so part of: EXC44_RS03830
location: complement(10814..11383)
location: region:10814-11383:-1
so has part: feature:10814-11383:-1:exon

WP_165001841.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10814-11383:-1:exon

EXC44_RS03835
type: Gene
subclass of: SO_0000704
RO_0002162: 29553
locus tag: EXC44_RS03835
old locus tag: NCTC10118_00773
so part of: sequence
location: complement(11414..12043)
location: region:11414-12043:-1
so has part: feature:11414-12043:-1:exon
subclass of: SO_0000010

position:11414:-1
position: 11414
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12043:-1
position: 12043
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11414-12043:-1:exon

EXC44_RS03835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29553
locus tag: EXC44_RS03835
old locus tag: NCTC10118_00773
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MDDLIEKKQEIILKIKEYRRIKFMKYASLSNLEEDILEHIELENGSQPPKEQHVYELMPGYVRFVQNRDYSSDVHLTYIPISKRNHLCSISDIMMDKYGDAGAIRYGIVGAFNVALFKIIPKNFYEIEYIRDFLSQKKIKDLLYLSSQASTRPSLNEKTFIGIKMPLLSKDILFKYQESMENILNIELKIKNEIEKLKQIKQHLLNKYF
SIO_010081: EXC44_RS03835
subclass of: SO_0000673
so part of: EXC44_RS03835
location: complement(11414..12043)
location: region:11414-12043:-1
so has part: feature:11414-12043:-1:exon

WP_129621440.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11414-12043:-1:exon

EXC44_RS03840
type: Gene
subclass of: SO_0000704
RO_0002162: 29553
locus tag: EXC44_RS03840
old locus tag: NCTC10118_00774
so part of: sequence
location: complement(12065..13096)
location: region:12065-13096:-1
so has part: feature:12065-13096:-1:exon
subclass of: SO_0000010

position:12065:-1
position: 12065
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13096:-1
position: 13096
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12065-13096:-1:exon

EXC44_RS03840
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29553
locus tag: EXC44_RS03840
old locus tag: NCTC10118_00774
EC number: 3.1.21.-
inference: COORDINATES: protein motif:HMM:NF013579.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006304 - DNA modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: restriction endonuclease subunit S
translation: MKLKEILEICYGKDQKNVEVDSSEIPILGSGGIIGYSSKYLYDKESVLIGRVGTIATPFYINKPFWTVNTLFYTKIDVTKVIPRYLYYWLLTKNLNVHREGSAVPRLTRKNLNELELVLPPINTQQHIVNTIGSVDDLIEKKQEIILKIKEYRRIKFMKYASLSNLEEDILEHIELENGSQPPKEQHVYELMPGYVRFVQNRDYSSDVHLTYIPISKRNHLCSISDIMMDKYGDAGAIRYGIVGAFNVALFKIIPKNFYEIEYIRDFLSQKKIKDLLYLSSQASTRPSLNEKTFIGIKMPLLSKDILFKYQESMENILNIELKIKNEIEKLKQIKQHLLNKYF
SIO_010081: EXC44_RS03840
subclass of: SO_0000673
so part of: EXC44_RS03840
location: complement(12065..13096)
location: region:12065-13096:-1
so has part: feature:12065-13096:-1:exon

WP_129621909.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12065-13096:-1:exon

EXC44_RS03845
type: Gene
subclass of: SO_0000704
RO_0002162: 29553
locus tag: EXC44_RS03845
old locus tag: NCTC10118_00775
so part of: sequence
location: 13100..13582
location: region:13100-13582:1
so has part: feature:13100-13582:1:exon
subclass of: SO_0000010

position:13100:1
position: 13100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13582:1
position: 13582
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13100-13582:1:exon

EXC44_RS03845
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29553
locus tag: EXC44_RS03845
old locus tag: NCTC10118_00775
EC number: 3.1.21.-
inference: COORDINATES: protein motif:HMM:NF013579.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006304 - DNA modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: restriction endonuclease subunit S
translation: MRTYKIKEIAQIINGSTPSTKNKAYWNGNIVWITPSDLSSFNGKYIYTSNKLITKEGYDSCSTTLVPKGTVLLSSKASIGYLAIAGVELCTSQGFKSLVCNPALINNEYMYYWLSTKIKFFNSISSGAVMKELTTDILENINIELPNFNTQQHIVNIRGI
SIO_010081: EXC44_RS03845
subclass of: SO_0000673
so part of: EXC44_RS03845
location: 13100..13582
location: region:13100-13582:1
so has part: feature:13100-13582:1:exon

WP_129621430.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13100-13582:1:exon

EXC44_RS03850
type: Gene
subclass of: SO_0000704
RO_0002162: 29553
locus tag: EXC44_RS03850
old locus tag: NCTC10118_00776
so part of: sequence
location: 13582..14064
location: region:13582-14064:1
so has part: feature:13582-14064:1:exon
subclass of: SO_0000010

position:14064:1
position: 14064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13582-14064:1:exon

EXC44_RS03850
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29553
locus tag: EXC44_RS03850
old locus tag: NCTC10118_00776
EC number: 3.1.21.-
inference: COORDINATES: protein motif:HMM:NF013579.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006304 - DNA modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: restriction endonuclease subunit S
translation: MIYQLKDLAIISRGSQPFPVSKYLSNTGYPWLKIADFKLGDRVVNNTHEFIKHEGINKTKLVPKGTLVVSSSGTLGIPIFTGSQMCLYSGFIYFEKLSDKIMPLYLFYYLLKLRQTLQTKGTGAAIKHLQIKTFENLKIDLPSIDNQIHIVNTILFNLFF
SIO_010081: EXC44_RS03850
subclass of: SO_0000673
so part of: EXC44_RS03850
location: 13582..14064
location: region:13582-14064:1
so has part: feature:13582-14064:1:exon

WP_129621428.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13582-14064:1:exon

EXC44_RS03855
type: Gene
subclass of: SO_0000704
RO_0002162: 29553
locus tag: EXC44_RS03855
old locus tag: NCTC10118_00777
so part of: sequence
location: complement(14044..15522)
location: region:14044-15522:-1
so has part: feature:14044-15522:-1:exon
subclass of: SO_0000010

position:14044:-1
position: 14044
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15522:-1
position: 15522
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14044-15522:-1:exon

EXC44_RS03855
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29553
locus tag: EXC44_RS03855
old locus tag: NCTC10118_00777
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012242537.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: class I SAM-dependent DNA methyltransferase
translation: MSQIINEDILWKAAEKLRDKVDPADYKNIVLGLVFLKYVSDKYTAKYNELIKYNDGREEDEDYYTAEHVFIVPKESLWTYVASHSKQDNLGQVIDNAFILLEKINNQLKGILPKTYSKSDLDKTALGELVDFFTNNLNMEDADGDFFGQVYEYYVGAFAKYIPTKGGEFFTPKSVVQLMVDILEPYKGRVYDPCCGSGGMFVQCSKFVKEHQGKIDNISIFGQESNPGTWKMAKMNLAIRGLEGNLGERNGDTFTDDLHKSLRADYIIANPPYNLKEFWKPSLQGDPRWVFGKPSEKNGNYAWLSLMYAKLSPKGKAAILMPNGATTSNTQDDYKIRKAMIESGKIDAILALPNKLFANVSISVQCWILNKDKTNKDILFVNADEMGKLISRKIRVLEDDDINKILKAYKDFKSNTLIDLPGFCKKATLDEIIAQDYSLNPGRYVGADESNKLSPEEIKEQLKVASAELLKLMKEGMELEEKVKEILEEEIK
SIO_010081: EXC44_RS03855
subclass of: SO_0000673
so part of: EXC44_RS03855
location: complement(14044..15522)
location: region:14044-15522:-1
so has part: feature:14044-15522:-1:exon

WP_129621426.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14044-15522:-1:exon

EXC44_RS04055
type: Gene
subclass of: SO_0000704
RO_0002162: 29553
locus tag: EXC44_RS04055
so part of: sequence
location: complement(16055..16186)
location: region:16055-16186:-1
so has part: feature:16055-16186:-1:exon
subclass of: SO_0000010

position:16055:-1
position: 16055
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16186:-1
position: 16186
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16055-16186:-1:exon

EXC44_RS04055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29553
locus tag: EXC44_RS04055
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MHRLIRYYIPKGKSFDKYSQHGIDYMMDKINNYRQVVRQYKIT
SIO_010081: EXC44_RS04055
subclass of: SO_0000673
so part of: EXC44_RS04055
location: complement(16055..16186)
location: region:16055-16186:-1
so has part: feature:16055-16186:-1:exon

WP_268811780.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16055-16186:-1:exon

EXC44_RS03860
type: Gene
subclass of: SO_0000704
RO_0002162: 29553
locus tag: EXC44_RS03860
old locus tag: NCTC10118_00778
so part of: sequence
location: complement(16331..16903)
location: region:16331-16903:-1
so has part: feature:16331-16903:-1:exon
subclass of: SO_0000010

position:16331:-1
position: 16331
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16903:-1
position: 16903
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16331-16903:-1:exon

EXC44_RS03860
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29553
locus tag: EXC44_RS03860
old locus tag: NCTC10118_00778
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MSVKTLNFAKLYEHLLGYSFSRLFFVSDAIKEKWKAYRKYWYSELNTYNKNRNKKNLVQKEVKKSVTYLVNSFKKISPDEFAASPSTIYKIIKKYPYFLEFDHIVKKSEGKYGTRKQKQTKPKTLKYATEISKRPDYINDRLEHGHFELDTVIGKINDTYCIVTIIERQTRMSYAMLSKRNSKAIKQTLL
SIO_010081: EXC44_RS03860
subclass of: SO_0000673
so part of: EXC44_RS03860
location: complement(16331..16903)
location: region:16331-16903:-1
so has part: feature:16331-16903:-1:exon

WP_129621425.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16331-16903:-1:exon

EXC44_RS03865
type: Gene
subclass of: SO_0000704
RO_0002162: 29553
locus tag: EXC44_RS03865
old locus tag: NCTC10118_00779
so part of: sequence
location: complement(16993..17319)
location: region:16993-17319:-1
so has part: feature:16993-17319:-1:exon
subclass of: SO_0000010

position:16993:-1
position: 16993
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17319:-1
position: 17319
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16993-17319:-1:exon

EXC44_RS03865
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29553
locus tag: EXC44_RS03865
old locus tag: NCTC10118_00779
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MWHCFCLPCNKIVVLINFKKWKETLKLYEKFRKYICVFDKYRKENKYQHFKIEENHNTILKMQGALETQRKLRTSQIDLEQLYNILQELSEGFSIQEVAKILIETFEA
SIO_010081: EXC44_RS03865
subclass of: SO_0000673
so part of: EXC44_RS03865
location: complement(16993..17319)
location: region:16993-17319:-1
so has part: feature:16993-17319:-1:exon

WP_129621423.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16993-17319:-1:exon

EXC44_RS03870
type: Gene
subclass of: SO_0000704
RO_0002162: 29553
locus tag: EXC44_RS03870
old locus tag: NCTC10118_00780
so part of: sequence
location: 17496..18959
location: region:17496-18959:1
so has part: feature:17496-18959:1:exon
subclass of: SO_0000010

position:17496:1
position: 17496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18959:1
position: 18959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17496-18959:1:exon

EXC44_RS03870
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29553
locus tag: EXC44_RS03870
old locus tag: NCTC10118_00780
inference: COORDINATES: protein motif:HMM:NF012311.2
GO function: GO:0008236 - serine-type peptidase activity [Evidence IEA]
GO process: GO:0006508 - proteolysis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 4
product: S8 family serine peptidase
translation: MVKYDEYTSVLSIAQHKEVDSKSLLTFTTDFLTKNNIEFNKIYDFNTNVYYEDFVKIRTLQNDKLSLEDLNIYDSRYYNSDWSRENVNEYLFASVGLDKETRSRHFNSFINNKLSVGVLEPGVVESHFPTFEWNRKYGNGIWWRNEWFFNEKHTRHSTQVSELIAGKKGIMPTLGIVSVQVAINWNGISGEMNYLLRHTNIVNNSWSLGFIKKLRKVDPQMLKYNWLSKYLDDLIYNNKELINIVAASNYYDYGLKTLFSNGLSRNSIIVGATANENLEKKSYYSQIGNDLNYVSVVTPGGNYWFSDRTQYYDEDGNLVTAGYNNNGTSFSAPVVTAIAGMLKQKYPHKFDLGSDSIIFKSALITGSRKPAGVNSIYTAETGYEIPQYNKIEEAMQSLIVIKNINKNNPPYLNSRRVYFNKGDKIRASLVFLHDRLGDKTDIDFKIKSQSWYQLAISNFGSRNVEVIEFTAPSDGYYTLEAYPYKME
SIO_010081: EXC44_RS03870
subclass of: SO_0000673
so part of: EXC44_RS03870
location: 17496..18959
location: region:17496-18959:1
so has part: feature:17496-18959:1:exon

WP_129621421.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17496-18959:1:exon

EXC44_RS03875
type: Gene
subclass of: SO_0000704
RO_0002162: 29553
locus tag: EXC44_RS03875
old locus tag: NCTC10118_00781
so part of: sequence
location: 19212..19481
location: region:19212-19481:1
so has part: feature:19212-19481:1:exon
subclass of: SO_0000010

position:19212:1
position: 19212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19481:1
position: 19481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19212-19481:1:exon

EXC44_RS03875
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29553
locus tag: EXC44_RS03875
old locus tag: NCTC10118_00781
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 4
product: hypothetical protein
translation: MIRKVILDEKKMCKKMNLIIFLVILHINIFNKSNYDHLNKLKWQTDNLKVTSYLIKNQDQFIHLLQKHNPKKYQNKEKIIKEHNELLEK
SIO_010081: EXC44_RS03875
subclass of: SO_0000673
so part of: EXC44_RS03875
location: 19212..19481
location: region:19212-19481:1
so has part: feature:19212-19481:1:exon

WP_129621910.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19212-19481:1:exon