Vibrio navarrensis strain 0053-83 plasmid unnamed1.
type: Entry
definition: Vibrio navarrensis strain 0053-83 plasmid unnamed1.
sequence version: NZ_CP051119.1
sequence date: 2023-03-10
sequence: sequence
division: CON
label: NZ_CP051119.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN12648276
keyword: RefSeq
source: Vibrio navarrensis
organism: Vibrio navarrensis
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP051119.1.\nAssemblies not circularized.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 105.07x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/09/2023 09:31:30\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,961\nCDSs (total) :: 3,807\nGenes (coding) :: 3,714\nCDSs (with protein) :: 3,714\nGenes (RNA) :: 154\nrRNAs :: 12, 11, 11 (5S, 16S, 23S)\ncomplete rRNAs :: 12, 11, 11 (5S, 16S, 23S)\ntRNAs :: 116\nncRNAs :: 4\nPseudo Genes (total) :: 93\nCDSs (without protein) :: 93\nPseudo Genes (ambiguous residues) :: 0 of 93\nPseudo Genes (frameshifted) :: 57 of 93\nPseudo Genes (incomplete) :: 41 of 93\nPseudo Genes (internal stop) :: 15 of 93\nPseudo Genes (multiple problems) :: 18 of 93\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000155
sequence length: 29930
topology: circular
so has quality: SO_0000988
location: 1..29930
location: region:1-29930:1
RO_0002162: 29495

NZ_CP051119
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN12648276
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
author: Rigney, Z.
author: Santovenia, M.
author: Griswold, T.
author: Batra, D.
journal: Submitted (10-DEC-2019) EDLB, CDC, 1600 Clifton Road, Atlanta, GA 30329, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29930:1
position: 29930
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-29930:1:source
so part of: sequence
organism: Vibrio navarrensis
mol type: genomic DNA
strain: 0053-83
isolation source: wound
plasmid: unnamed1
country: USA

29495
type: Taxonomy
SIO_000068: taxonomy

HF293_RS00005
type: Gene
subclass of: SO_0000704
RO_0002162: 29495
locus tag: HF293_RS00005
so part of: sequence
location: 52..1314
location: region:52-1314:1
so has part: feature:52-1314:1:exon
subclass of: SO_0000010

59227344
type: Gene
SIO_000068: ncbigene

position:52:1
position: 52
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1314:1
position: 1314
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:52-1314:1:exon

HF293_RS00005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29495
locus tag: HF293_RS00005
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKHYRDITSFHSIGKAISGHPESTKNIVDLLNFLSQVIFCDEIAVSVLGPKEITDGTIEVVEKLISLGIPKELIRRYSYPDGSERIHQRNRIADQLKFDWINHFPVLGKASRDSFPPGYYDMLSNTIDIFSDTLLTNTSVANYQREINESLNDDSISYMVGLMLSDRDLTDYIRYNFKKQGVTRDHLIHFIALSRNKYNLLLSEDLKLIFTPSASRAQANHTTAYSFMDTYRKKLNKDPHEEMQRLKLTGKQYELDIPSALHILLADKATSAEQLIVKALDAREKVAWYRDEVLNEYNELKFSGEIKDKIELSNRLDSAYNDIASVLNTNGAGYSKTLFGHFSVDLSDFSSAAGSMKAVGDFLKLTKNKWKFRKNQDCYLLTQELIHYMSKDQNEHKETVQRLYLALGGEYKNLYLSSCP
SIO_010081: HF293_RS00005
subclass of: SO_0000673
so part of: HF293_RS00005
location: 52..1314
location: region:52-1314:1
so has part: feature:52-1314:1:exon

WP_039461235.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:52-1314:1:exon

HF293_RS00010
type: Gene
subclass of: SO_0000704
RO_0002162: 29495
locus tag: HF293_RS00010
so part of: sequence
location: complement(1297..1860)
location: region:1297-1860:-1
so has part: feature:1297-1860:-1:exon
subclass of: SO_0000010

59227345
type: Gene
SIO_000068: ncbigene

position:1297:-1
position: 1297
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1860:-1
position: 1860
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1297-1860:-1:exon

HF293_RS00010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29495
locus tag: HF293_RS00010
inference: COORDINATES: protein motif:HMM:NF024811.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HAD hydrolase-like protein
translation: MAFDLTNIKLVIFDLDGTLVESNEQEIDYFFKALRLEVGTDIDTDISQYPDRTFSSVINSMNSTISYQDLYEKLELKMTDFVQRVTWISLPLGKKLLQQTIEQELDYFVVTGNFKQASIDKAALANIELPEERVYCTTLEFASKGKVIQTLISKHNYSPYEVLSIGDSQYDKDIADQLGLNFLWATA
SIO_010081: HF293_RS00010
subclass of: SO_0000673
so part of: HF293_RS00010
location: complement(1297..1860)
location: region:1297-1860:-1
so has part: feature:1297-1860:-1:exon

WP_039461237.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1297-1860:-1:exon

HF293_RS00015
type: Gene
subclass of: SO_0000704
RO_0002162: 29495
locus tag: HF293_RS00015
so part of: sequence
location: complement(2175..2693)
location: region:2175-2693:-1
so has part: feature:2175-2693:-1:exon
subclass of: SO_0000010

59227346
type: Gene
SIO_000068: ncbigene

position:2175:-1
position: 2175
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2693:-1
position: 2693
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2175-2693:-1:exon

HF293_RS00015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29495
locus tag: HF293_RS00015
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017097178.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: metal-dependent hydrolase
translation: MKWINHTLIAGAICAVISPPHVPICIAGATAPDWFEYILKLTRKHVKHRGVTHILTHWLMAALTFTFVWDYHGIGAAFAWGGFSHIITDGMTVSGVPFSPYSDRRFHLFGGRFRTGDPVEYAISAGVVIVCIALSHATGGSGFAPFFYDWSGMYERGLIDALEWKSNRFRLI
SIO_010081: HF293_RS00015
subclass of: SO_0000673
so part of: HF293_RS00015
location: complement(2175..2693)
location: region:2175-2693:-1
so has part: feature:2175-2693:-1:exon

WP_039461239.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2175-2693:-1:exon

HF293_RS00020
type: Gene
subclass of: SO_0000704
RO_0002162: 29495
locus tag: HF293_RS00020
so part of: sequence
location: complement(2690..3436)
location: region:2690-3436:-1
so has part: feature:2690-3436:-1:exon
subclass of: SO_0000010

59227347
type: Gene
SIO_000068: ncbigene

position:2690:-1
position: 2690
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3436:-1
position: 3436
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2690-3436:-1:exon

HF293_RS00020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29495
locus tag: HF293_RS00020
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011998869.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQIKWAIYAITLVTCSTLANDWGISTPWSEPEYKAPEIHPYQLPTLSGSAPHYNQPTPALSPAPKIDPDAIFHIILRCYPEKSTFNIDLNLVAGMKTNLDEYNSDDWPSISEHYIGIVGKMPLYSSTEQSRERQWEYQRRLDTAKAVATFTQALAERNYAYRLMGLYLSLEARSQIRVQQGVASINEQVELLEKVAGAHRDVLTHEAKIVEQRLALVSMCESTNVEMVNQYLEKIAYLPKQTGKESAP
SIO_010081: HF293_RS00020
subclass of: SO_0000673
so part of: HF293_RS00020
location: complement(2690..3436)
location: region:2690-3436:-1
so has part: feature:2690-3436:-1:exon

WP_039461242.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2690-3436:-1:exon

HF293_RS00025
type: Gene
subclass of: SO_0000704
RO_0002162: 29495
locus tag: HF293_RS00025
so part of: sequence
location: complement(3426..4148)
location: region:3426-4148:-1
so has part: feature:3426-4148:-1:exon
subclass of: SO_0000010

59227348
type: Gene
SIO_000068: ncbigene

position:3426:-1
position: 3426
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4148:-1
position: 4148
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3426-4148:-1:exon

HF293_RS00025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29495
locus tag: HF293_RS00025
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017061976.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRFLKLRTDHKRQRKDGSRYVTPLIVDAPRRFAPSQDRKETSLRRKECQLITGAHDSGKSRWLLRLRDNRLEIWGRKSQPVLLEGLMPLSSWIDVKGIDRWHHDKFAQDDGFIPWSRLNLQQKADLLADYLLDTEAMLFVDDAHKLTGRKAQIARKCLISCKLWIMTTSEEGRLPPSIRPIVERRNPQRTNLESEVSYDSTQALIWFLVALCVVAGAWEAGAVLGGLQMLGRGRRASRAD
SIO_010081: HF293_RS00025
subclass of: SO_0000673
so part of: HF293_RS00025
location: complement(3426..4148)
location: region:3426-4148:-1
so has part: feature:3426-4148:-1:exon

WP_039461244.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3426-4148:-1:exon

HF293_RS00030
type: Gene
subclass of: SO_0000704
RO_0002162: 29495
locus tag: HF293_RS00030
so part of: sequence
location: 5204..5812
location: region:5204-5812:1
so has part: feature:5204-5812:1:exon
subclass of: SO_0000010

59227349
type: Gene
SIO_000068: ncbigene

position:5204:1
position: 5204
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5812:1
position: 5812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5204-5812:1:exon

HF293_RS00030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29495
locus tag: HF293_RS00030
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005500641.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MANYAYLRVSTDSQDVANQKHGIYEYVNRVGISNLVFVEDIVTGKKKWQQRQLGTLIEGMGIGDKLVFAEVSRMARSTLQVLEILEACMAKGIDVYIAKQNMQLDGSMQAKITATVLGLAAEIEREFISERTKEALAARKQRGVTLGRPSGPAKKLKLDVKREQIEKYLAKGLSLRSVAKLIDEAPSTLSDYCSARGLTKAN
SIO_010081: HF293_RS00030
subclass of: SO_0000673
so part of: HF293_RS00030
location: 5204..5812
location: region:5204-5812:1
so has part: feature:5204-5812:1:exon

WP_039461246.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5204-5812:1:exon

HF293_RS00035
type: Gene
subclass of: SO_0000704
RO_0002162: 29495
locus tag: HF293_RS00035
so part of: sequence
location: 6043..6582
location: region:6043-6582:1
so has part: feature:6043-6582:1:exon
subclass of: SO_0000010

59227350
type: Gene
SIO_000068: ncbigene

position:6043:1
position: 6043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6582:1
position: 6582
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6043-6582:1:exon

HF293_RS00035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29495
locus tag: HF293_RS00035
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011998861.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MKIGYARVSSDDQTLEVQVKQLEQIGCEKVFQETASGKSADREELNRLIDFAREGDVIHVTKVDRIARNTIDALQIADQLSSKGAGLVFHDLGNIDINSDVGRVIYTTISAFAEMERKRILQRCNEGRAHAKAQGRHLGRFPDKTLHKRIQELNEQGMNKRQISIELGCSRTTVYKVLE
SIO_010081: HF293_RS00035
subclass of: SO_0000673
so part of: HF293_RS00035
location: 6043..6582
location: region:6043-6582:1
so has part: feature:6043-6582:1:exon

WP_039461247.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6043-6582:1:exon

HF293_RS00040
type: Gene
subclass of: SO_0000704
RO_0002162: 29495
locus tag: HF293_RS00040
so part of: sequence
location: 6728..7672
location: region:6728-7672:1
so has part: feature:6728-7672:1:exon
subclass of: SO_0000010

59227351
type: Gene
SIO_000068: ncbigene

position:6728:1
position: 6728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7672:1
position: 7672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6728-7672:1:exon

HF293_RS00040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29495
locus tag: HF293_RS00040
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005306968.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA-binding protein
translation: MDTPISANQMQDKVNAICNDLYAKGQKVSVRVVLSMMPEVSSTSTVHKYYKQWKEELEANQKSLLEKMGFSPEFTRVFMAEITRHATEAERRYREIADDAKEQSAKAIEDLERVEERLHKQAAVLEQKDNLIKTLQADLAETKKTQEAVSAELRLQIDELTKTANEKAEVADRLRTELAKKELQLENNQQAAASITEENESLREQIKDKVEQMIEQAKAITRLESSLDAKTALLDELKQDKQALSQKNQDLDAELRDLQQSRYSQQTSLNEAQSREQNAQTRIDDLVKAIAEAKATIAQQSATITRYESLLDTK
SIO_010081: HF293_RS00040
subclass of: SO_0000673
so part of: HF293_RS00040
location: 6728..7672
location: region:6728-7672:1
so has part: feature:6728-7672:1:exon

WP_039461249.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6728-7672:1:exon

HF293_RS00045
type: Gene
subclass of: SO_0000704
RO_0002162: 29495
locus tag: HF293_RS00045
so part of: sequence
location: 8378..9352
location: region:8378-9352:1
so has part: feature:8378-9352:1:exon
subclass of: SO_0000010

59227352
type: Gene
SIO_000068: ncbigene

position:8378:1
position: 8378
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9352:1
position: 9352
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8378-9352:1:exon

HF293_RS00045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29495
locus tag: HF293_RS00045
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKAWKIIVPLSTLLLAGCANPPEVVKPVAYNFGQSEALNKANQTFLTKSYKYGFKTVKSPLKDFTQEEIAEAKTALTKPSGGGVPLLFGALSLATGNLTGVIDIAGGTAASIASSDHVAAYSHWIVALDASEFKNGIEARNHASEVIQTTAMTLLEEKGNTLKKVVLKEEGEAALTGAKLHQITAYTVNDDLRLFGFYSDDYYSDKGGLELGRTNLVPYEQQYVTVRESHVDGGIGGFKSFLDGVVIGYEGIEGYEQYLLDLTARLPKGYLLYLPSFPSANVVTVEKVEDWSCFTCRKTRGYFWRTHFVPAIYTEGKKLEFIQP
SIO_010081: HF293_RS00045
subclass of: SO_0000673
so part of: HF293_RS00045
location: 8378..9352
location: region:8378-9352:1
so has part: feature:8378-9352:1:exon

WP_039461250.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8378-9352:1:exon

HF293_RS00050
type: Gene
subclass of: SO_0000704
RO_0002162: 29495
locus tag: HF293_RS00050
so part of: sequence
location: 9594..10061
location: region:9594-10061:1
so has part: feature:9594-10061:1:exon
subclass of: SO_0000010

59227353
type: Gene
SIO_000068: ncbigene

position:9594:1
position: 9594
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10061:1
position: 10061
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9594-10061:1:exon

HF293_RS00050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29495
locus tag: HF293_RS00050
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQNCTRLFASKLSGAEQLQALWNIMLNSRHRTEQRALKKPAELARFFCLAQKDGQSRVRGRIKTQTTCFHAVPFLCSHYVSLSWCVFFCPSGQSIKGASCFMVPTTSPAHPCCAPFLCSLGAVFAVPLVVNLAIFGVILWRSGGRAVVVYIVTLN
SIO_010081: HF293_RS00050
subclass of: SO_0000673
so part of: HF293_RS00050
location: 9594..10061
location: region:9594-10061:1
so has part: feature:9594-10061:1:exon

WP_172548448.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9594-10061:1:exon

HF293_RS00055
type: Gene
subclass of: SO_0000704
RO_0002162: 29495
locus tag: HF293_RS00055
so part of: sequence
location: 10107..10949
location: region:10107-10949:1
so has part: feature:10107-10949:1:exon
subclass of: SO_0000010

59227354
type: Gene
SIO_000068: ncbigene

position:10107:1
position: 10107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10949:1
position: 10949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10107-10949:1:exon

HF293_RS00055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29495
locus tag: HF293_RS00055
EC number: 3.1.-.-
inference: COORDINATES: protein motif:HMM:NF024783.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HNH endonuclease signature motif containing protein
translation: MNFWIFKLSKQNLYPDVPGKQYVFDNTHSVKVASGDAFIFLDKTKDYSFTAVGTVSRLEEREPTEKEASRTKNVRTVYTAYLRDVYYFDAPLCIDPQKGKDNRKRLGIVDVNLLGWSHSMAKLCDDMFNRIIDLAYERNLFQPLLNIGNTKRGNGSFEIKDQWGLVKRRAYLYDFSRKVKSLCKGQCVVCGLNNPLFLDAAHIIPYAIDKKNRANPSNGICLCKHCHIAYDNSLIDIAHDGELAINDESFLLNHKVLLSKEMRSTLVFHASEFLTKKAMS
SIO_010081: HF293_RS00055
subclass of: SO_0000673
so part of: HF293_RS00055
location: 10107..10949
location: region:10107-10949:1
so has part: feature:10107-10949:1:exon

WP_052072626.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10107-10949:1:exon

HF293_RS00060
type: Gene
subclass of: SO_0000704
RO_0002162: 29495
gene: dcm
locus tag: HF293_RS00060
so part of: sequence
location: complement(10996..12666)
location: region:10996-12666:-1
so has part: feature:10996-12666:-1:exon
subclass of: SO_0000010

59227355
type: Gene
SIO_000068: ncbigene

position:10996:-1
position: 10996
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12666:-1
position: 12666
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10996-12666:-1:exon

HF293_RS00060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29495
gene: dcm
locus tag: HF293_RS00060
EC number: 2.1.1.37
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017111305.1
GO function: GO:0003886 - DNA (cytosine-5-)-methyltransferase activity [Evidence IEA]
GO process: GO:0006304 - DNA modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA (cytosine-5-)-methyltransferase
translation: MRYNEILKGDLEDEKRIEHNRIATNKLLKLLIEVYDQKNLAEKFKQLGGNYAELTREKLNRWKANPNISSIIFHEKALEDLRRQLLPARPIHWDNPDFTFIDLFAGIGGLRKGFEDAGGKCVFTSEWDAAARRTYLANHYVDDCELPYFLDNPSENPEKNTSYMDITQITQSGNQDKSEEEKQASILKHIPKHDLLLAGFPCQPFSLAGVSKKNSLGRAHGFECDTQGTLFFDVEQILITRQPKYFVLENVKNLKSHDKGNTFATIIRALDRAGYWIADISNAGENIEEAIKEVRKRKLEPTIIDGSLFTPQHRERIVLVGVRKDLIEKKPDLKQLSLKNIERPEKRYNISEILCDLNATEKAKFTLTPNLWNYLYHYALKHQSKGNGFGFGLVDPENPNAVTRTLSARYHKDGSEILINQDGLEPEYLINNKEHGIRKNLERAQASLHYAEQLKIKNPNLTDKEYKLAIKEGEKKYDEEYGRYAAEFNSLYKTPRRLTPRECARLMGFEKPEFDRDETDTDFRIVCADTAAYKQFGNSVVVPVFRAVAKLIKKYM
SIO_010081: HF293_RS00060
subclass of: SO_0000673
so part of: HF293_RS00060
location: complement(10996..12666)
location: region:10996-12666:-1
so has part: feature:10996-12666:-1:exon

WP_039461207.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10996-12666:-1:exon

HF293_RS00065
type: Gene
subclass of: SO_0000704
RO_0002162: 29495
locus tag: HF293_RS00065
so part of: sequence
location: complement(12785..14011)
location: region:12785-14011:-1
so has part: feature:12785-14011:-1:exon
subclass of: SO_0000010

59227356
type: Gene
SIO_000068: ncbigene

position:12785:-1
position: 12785
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14011:-1
position: 14011
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12785-14011:-1:exon

HF293_RS00065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29495
locus tag: HF293_RS00065
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014085482.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0009036 - type II site-specific deoxyribonuclease activity [Evidence IEA]
GO process: GO:0009307 - DNA restriction-modification system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II restriction endonuclease
translation: MFEQLNDVFSAAAFKYLSAVDADPGSSNQHEIGGLVAAGIGYQLGMANDGRPVHIPCTMVYLDDDEATTICEDHVTWYDARYTSPTRKPEWRLYYKSNSVSERFRPGDFFLIARTHEGTLLLVFCPANTELEAQIRTLFGVRNTTANLRGLTSVDFNSSIAVPIRLMFARYGIEIGSDGNNYLDTILERFGAEFPKTREFSTFSREIAPAICPIETPDKALIAWMETEESAFRQLEKHIVREKLVKGFGENGDDVDDFISFSLSVQNRRKSRSGHAFENHIETILVANNVQFERGARTEGYKKPDFIFPNAASYRDPLFPEERLLLLGAKTTCKDRWRQVLSEAERVPRKHLITMEPAISTTQTDEMRSQQLQLVVPEPLQSTYQPEQTSWLMTFEGFICLAKEMQNA
SIO_010081: HF293_RS00065
subclass of: SO_0000673
so part of: HF293_RS00065
location: complement(12785..14011)
location: region:12785-14011:-1
so has part: feature:12785-14011:-1:exon

WP_039461208.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12785-14011:-1:exon

HF293_RS00070
type: Gene
subclass of: SO_0000704
RO_0002162: 29495
locus tag: HF293_RS00070
so part of: sequence
location: 14524..15489
location: region:14524-15489:1
so has part: feature:14524-15489:1:exon
subclass of: SO_0000010

59227357
type: Gene
SIO_000068: ncbigene

position:14524:1
position: 14524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15489:1
position: 15489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14524-15489:1:exon

HF293_RS00070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29495
locus tag: HF293_RS00070
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017055769.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LPD25 domain-containing protein
translation: MSHLNSSTVHSTKAFTAGNVSPLHQSGSTTMKIAPVSVLVNWSESNRFESGLEMDFVAFEALALEAALQNPLGGYDKTDITVTFDNGHQHRCRVDLGCGGNETGFADHCFRILEHAQALEISEPNHWYFTHANGKELLALVRGYAFNRQHVAQARSQVLAATRLAKEQQEIEKQAQQAAKREKMEQERAKLACFREQLVIPEWAQAVIVASFTVYDEEQSDPYGDYYQYRTEKTIILAWSKHQRRLFPELRKACLNHPETEFLANVANSAEHRENYSMGAGTYLTDIDYIRCGWQVRKVRFWSTENKSQYVPLGELAANLG
SIO_010081: HF293_RS00070
subclass of: SO_0000673
so part of: HF293_RS00070
location: 14524..15489
location: region:14524-15489:1
so has part: feature:14524-15489:1:exon

WP_039461214.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14524-15489:1:exon

HF293_RS00075
type: Gene
subclass of: SO_0000704
RO_0002162: 29495
locus tag: HF293_RS00075
so part of: sequence
location: 15529..15723
location: region:15529-15723:1
so has part: feature:15529-15723:1:exon
subclass of: SO_0000010

59227358
type: Gene
SIO_000068: ncbigene

position:15529:1
position: 15529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15723:1
position: 15723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15529-15723:1:exon

HF293_RS00075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29495
locus tag: HF293_RS00075
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKNFLIDQKMVDLVERLRQIEKITVREIIGALNVALASRDVRIESKQDFDDFLQQVCEYQEQDE
SIO_010081: HF293_RS00075
subclass of: SO_0000673
so part of: HF293_RS00075
location: 15529..15723
location: region:15529-15723:1
so has part: feature:15529-15723:1:exon

WP_039461216.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15529-15723:1:exon

HF293_RS00080
type: Gene
subclass of: SO_0000704
RO_0002162: 29495
gene: umuD
locus tag: HF293_RS00080
so part of: sequence
location: 16068..16475
location: region:16068-16475:1
so has part: feature:16068-16475:1:exon
subclass of: SO_0000010

59227359
type: Gene
SIO_000068: ncbigene

position:16068:1
position: 16068
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16475:1
position: 16475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16068-16475:1:exon

HF293_RS00080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29495
gene: umuD
locus tag: HF293_RS00080
EC number: 2.7.7.7
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000864710.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: translesion error-prone DNA polymerase V autoproteolytic subunit
translation: MKVIPIYASAGITGFESPAAEYKKLAIDLDELLIEHPSATFLGQAKGDSMQGVGIFDGDLLIVDRHVQASDQDIIVANYNGEFVCKILDIRRRLLLSANEHLQPVPIHEFDSFSIEGVVIRSIRCHRPSPLLCGE
SIO_010081: HF293_RS00080
subclass of: SO_0000673
so part of: HF293_RS00080
location: 16068..16475
location: region:16068-16475:1
so has part: feature:16068-16475:1:exon

WP_039461217.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16068-16475:1:exon

HF293_RS00085
type: Gene
subclass of: SO_0000704
RO_0002162: 29495
locus tag: HF293_RS00085
so part of: sequence
location: 16475..17731
location: region:16475-17731:1
so has part: feature:16475-17731:1:exon
subclass of: SO_0000010

59227360
type: Gene
SIO_000068: ncbigene

position:17731:1
position: 17731
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16475-17731:1:exon

HF293_RS00085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29495
locus tag: HF293_RS00085
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019830223.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Y-family DNA polymerase
translation: MFALVDANSFYCSAEQVFRPEWRGKPVIVLSNNDGCIVAANRQAKEAGIEKFKPYFQVRALCEQRGVIALSSNYELYADLSEKMMQVIGRFAPEQHVYSIDETFLSFERCLTAIGDFRQHGTLIRRAVWKECRLPVCVGMGPTLTLAKLANHAAKKIPGYSGVCVLDNEAERLKVLAKTPVSDVWGVGRKLSSHFKLMGINTALDLAKKPAPLMRKNFNVEVERTIRELNGQRCKDWDVARADKKQIFSTRSAGQRITDVESLRQALCLHAGIASRKARKQSSLCRVMLVFASNSPFDEKPVSFKAIHRFAYPTSDVTQITSAASRLANEVFHEGVRFYKFGVGLLDLQDGRHEQKDLFNPCPNDEKLMAVFDSLNQRYGDGAVFLAAQGIGSKWEMRREMLTPQYTTRWRDLPKVRC
SIO_010081: HF293_RS00085
subclass of: SO_0000673
so part of: HF293_RS00085
location: 16475..17731
location: region:16475-17731:1
so has part: feature:16475-17731:1:exon

WP_039461219.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16475-17731:1:exon

HF293_RS00090
type: Gene
subclass of: SO_0000704
RO_0002162: 29495
locus tag: HF293_RS00090
so part of: sequence
location: complement(17749..18414)
location: region:17749-18414:-1
so has part: feature:17749-18414:-1:exon
subclass of: SO_0000010

59227361
type: Gene
SIO_000068: ncbigene

position:17749:-1
position: 17749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18414:-1
position: 18414
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17749-18414:-1:exon

HF293_RS00090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29495
locus tag: HF293_RS00090
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSRILTLFLLACFSFSAAACFKISENNMYLLEGGVEYCLESEYQYAYVVNSEFSSNIIEISDINKTRFEISYPRDTTQVPDKFRITPFENIQITVKHGLIYIKDAPKFRKKRSLQQLGVAVGSSLAGSAGSALGGGSFDPVPTAMGTLIGTGIGLATGPFAPIVGPIASNAITQNIINNSNKPRPPLTIMPTNRPTGSGANSHAGYGGSNTGSVGCIRCHQ
SIO_010081: HF293_RS00090
subclass of: SO_0000673
so part of: HF293_RS00090
location: complement(17749..18414)
location: region:17749-18414:-1
so has part: feature:17749-18414:-1:exon

WP_039461221.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17749-18414:-1:exon

HF293_RS00095
type: Gene
subclass of: SO_0000704
RO_0002162: 29495
locus tag: HF293_RS00095
so part of: sequence
location: 18860..20056
location: region:18860-20056:1
so has part: feature:18860-20056:1:exon
subclass of: SO_0000010

59227362
type: Gene
SIO_000068: ncbigene

position:18860:1
position: 18860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20056:1
position: 20056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18860-20056:1:exon

HF293_RS00095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29495
locus tag: HF293_RS00095
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004393970.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MDTQQTTLTFQALKQGADGYIKRRNQRLLANHRKELRNFTRAEATAYLDIDAKTLDKYVANAGIDPRRHQDSQWSINIEEMYTVRDLLPDSLRKEAKFVRDSHQKTQIIVIQNQKGGVGKTVSAATIASGLATEFHQEYRVGLIDMDGQATLSMYYAPEAEQEGCLSVGDLMMRNFDLEEGETLAQVVSDSFLKTTIPNLRILPASQTDRAIEGWFHEQVFSHKLPSPYSILSEIIDSVRDEFDILLIDTPPSLGYATYNAYFAATSVVFPLSITENDIDATCSYFSYIPQVWALLANANHSGYDFMKILLTNHRDGSTTTELMNSLYDHFSPYLYSKEFKHSEAIRQASSLLSTVFDMSKSEYPKSKGTFQSAQQNGYEVTSQILRDIVNVWREEQK
SIO_010081: HF293_RS00095
subclass of: SO_0000673
so part of: HF293_RS00095
location: 18860..20056
location: region:18860-20056:1
so has part: feature:18860-20056:1:exon

WP_039461222.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18860-20056:1:exon

HF293_RS00100
type: Gene
subclass of: SO_0000704
RO_0002162: 29495
locus tag: HF293_RS00100
so part of: sequence
location: 20056..21135
location: region:20056-21135:1
so has part: feature:20056-21135:1:exon
subclass of: SO_0000010

59227363
type: Gene
SIO_000068: ncbigene

position:21135:1
position: 21135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20056-21135:1:exon

HF293_RS00100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29495
locus tag: HF293_RS00100
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017061984.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParB family protein
translation: MAKKRGGSPLGNAPGSQQAQVSAAKANIDSLTRQLSQELTNAGESVAHYLQQTFGIQSVGSSVVWQLESGTQATFNEVTLSYEQVRDNTYVTFEVNGRDQSLLTKDSLSDLASLEFQQFYPAVGRELDGKIDVLDGSRRRAWFLQNRGKVQTFRILVTQDQISYSDAKALAKQLQTAKEHNQREIGLQCKAIMASGDFTQEDVAKVMGMSRPAVSKALKAASIDDKLISLFSDVNLLSHTDYSLLDKVMKILGNSAEELDLFVERVQERTVNVQAEQPLDETKLDIIAAIKAELKITEAKQVKEQAEVTPLAQFNSKGVFARKRVKGRNFSYEFGRLSKDVQSELDQAIAAVLEKYQDR
SIO_010081: HF293_RS00100
subclass of: SO_0000673
so part of: HF293_RS00100
location: 20056..21135
location: region:20056-21135:1
so has part: feature:20056-21135:1:exon

WP_039461224.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20056-21135:1:exon

HF293_RS00105
type: Gene
subclass of: SO_0000704
RO_0002162: 29495
locus tag: HF293_RS00105
so part of: sequence
location: complement(21377..22681)
location: region:21377-22681:-1
so has part: feature:21377-22681:-1:exon
subclass of: SO_0000010

59227364
type: Gene
SIO_000068: ncbigene

position:21377:-1
position: 21377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22681:-1
position: 22681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21377-22681:-1:exon

HF293_RS00105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29495
locus tag: HF293_RS00105
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTTYLTADVFGVRSKLIRSYIERDSVDEKFKKAIKDGNEVIVYGSSKQGKTSLILNHLSESDYIKVECSPQTKSVDIYKSILRQANISYVESESSEDAYEHGGKLSTGIKIKIPFFGDTSASADLSDKKSDKVTSHKTYVEYNLELAQDVSELLKKYNVNKYFVIENFHYLELSVQETLAYDLRVFQDHHLIFIILGIWREANRLVQFNGDLLDRVTEVPVEPWSSADFEKVIAKGQKLLNVDFSEVKDRLISDSFDSVGVVQEICKQCCLNAGVEETSPELVVITKKHLDDALETKAQEYGVRHIRNFEAFVDITKRTSSKSGKPSLAYPYYFIKLLLTQNFENIEKGLKRTVLLDEIRKIHHRPDDVRSSDLGKFLHNLTESQVSKKIQPPFVDYDRGGKVLKVIDSSLYFFLKHCDREEILDDISNPIEEN
SIO_010081: HF293_RS00105
subclass of: SO_0000673
so part of: HF293_RS00105
location: complement(21377..22681)
location: region:21377-22681:-1
so has part: feature:21377-22681:-1:exon

WP_039461227.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21377-22681:-1:exon

HF293_RS00110
type: Gene
subclass of: SO_0000704
RO_0002162: 29495
locus tag: HF293_RS00110
so part of: sequence
location: complement(23424..24098)
location: region:23424-24098:-1
so has part: feature:23424-24098:-1:exon
subclass of: SO_0000010

59227365
type: Gene
SIO_000068: ncbigene

position:23424:-1
position: 23424
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24098:-1
position: 24098
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23424-24098:-1:exon

HF293_RS00110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29495
locus tag: HF293_RS00110
inference: COORDINATES: protein motif:HMM:NF012534.2
GO function: GO:0003676 - nucleic acid binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cold shock domain-containing protein
translation: MKGQVVSFIVGKNYGFIKGDDGESYFFHLSSLKDKSSKSKVTKNTYVLFDPSPTPKGNAAKNITILDTFYRKRLVPFFVTKEASPKHGEIEQHHALSTPYYDDPNEAREYLKLMAMTVGCNAILNFHIRRETFSEGNYNYTMHAALGTLALISELVPCSSEAEVEEGEQEIREAIAQFDTNFSIVNERETKIRYNQEGWPVPRWFVPGLIIAAFILLSVIGIGN
SIO_010081: HF293_RS00110
subclass of: SO_0000673
so part of: HF293_RS00110
location: complement(23424..24098)
location: region:23424-24098:-1
so has part: feature:23424-24098:-1:exon

WP_039461254.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23424-24098:-1:exon

HF293_RS00115
type: Gene
subclass of: SO_0000704
RO_0002162: 29495
locus tag: HF293_RS00115
so part of: sequence
location: 24642..25655
location: region:24642-25655:1
so has part: feature:24642-25655:1:exon
subclass of: SO_0000010

59227366
type: Gene
SIO_000068: ncbigene

position:24642:1
position: 24642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25655:1
position: 25655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24642-25655:1:exon

HF293_RS00115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29495
locus tag: HF293_RS00115
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017097181.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFEETKDLSVIDEKDRANKFISSLLFSRATVFHPSARMTPSMSKRMAEVASMGGVSFDHPLEVVTVNSFGKNFRVELHNNYLLHAHRDVLETLLAYAKLIKLDDEAYKSGGKMTWRAVLGTLNDAQTLPNSSEQSLDEEIDSNAIVLSMSMYELATRMKIKPTRSNYRLIEDRIFQLNTSKLFICEMDSDGHISSRKPLSFVKEFMLCYDKSKNKNGKSDDVVANHIFVVPDQRLLEAIKSHGYYYRLEQHKITNYRSYAVRSFIKWLTTHNLDFLHTKKLSWAIEEYMNSVASNVGASFRYDLKRSLLEVRDQIETDFNLQIVSVDGREHQFFKVT
SIO_010081: HF293_RS00115
subclass of: SO_0000673
so part of: HF293_RS00115
location: 24642..25655
location: region:24642-25655:1
so has part: feature:24642-25655:1:exon

WP_052072628.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24642-25655:1:exon

HF293_RS00120
type: Gene
subclass of: SO_0000704
RO_0002162: 29495
locus tag: HF293_RS00120
so part of: sequence
location: 25658..26578
location: region:25658-26578:1
so has part: feature:25658-26578:1:exon
subclass of: SO_0000010

59227367
type: Gene
SIO_000068: ncbigene

position:25658:1
position: 25658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26578:1
position: 26578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25658-26578:1:exon

HF293_RS00120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29495
locus tag: HF293_RS00120
inference: COORDINATES: protein motif:HMM:NF024872.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MIKNLNSLLNDQTISEVPFVLKGLVKASIGMLIAAPSAGKSHLALSLAIEHASSAVTLGLSCTETPRKVLIVSSEDSSAVLRERMVEKLRSFSPDIQNELLSNLLFLTEQTPLIAPPEANKDEHDAASLYVNNLVQSAVDNDVDLIIVDTVTEAVGSCDEVKHDKHIKAGFQAIAKRTGAAILLVHHVNKNEIRGEQEVTMASGAGLSSVMRLVKFLITIKAEKNERKVRFLKSNYLPQSEEREFDIEFVDGVLSRKGGLSFAPPKKQKAEKPRIAKAIQEEPEVLSITPKPKRINESENDLRDVL
SIO_010081: HF293_RS00120
subclass of: SO_0000673
so part of: HF293_RS00120
location: 25658..26578
location: region:25658-26578:1
so has part: feature:25658-26578:1:exon

WP_039461229.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25658-26578:1:exon

HF293_RS00125
type: Gene
subclass of: SO_0000704
RO_0002162: 29495
locus tag: HF293_RS00125
so part of: sequence
location: 26902..27936
location: region:26902-27936:1
so has part: feature:26902-27936:1:exon
subclass of: SO_0000010

59227368
type: Gene
SIO_000068: ncbigene

position:26902:1
position: 26902
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27936:1
position: 27936
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26902-27936:1:exon

HF293_RS00125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29495
locus tag: HF293_RS00125
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015296309.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: macro domain-containing protein
translation: MISYEKGDLFNDSAEALVNAVNTVGVMGKGLAYQFKEKYPENFNKYRAACKRGELSVGRIFLVELNQGERPRYILNFPTKAHWKGKSKIEYITEGVADLVRLVKELGISSVAVPALGSGLGGLPWSQVQKVLCAAFEQAPEVKWNVYAPNDAPPECTPMKLTVGRSILLLALDAYLKSSRKDKLSELEAQGLVYLLNVKGALAAIHYDTFINIPFSSVLHDSLKKMDGHCLYLSGINKGPEATYISLDKSYLVEAKELINKKSVSLSSIRDVKELISGYQSNEGMSIISTALWVAEQSLVQDGDMNRDKMIKLVFEHLFKQRGISEGLIKGAFERLTEELWLPR
SIO_010081: HF293_RS00125
subclass of: SO_0000673
so part of: HF293_RS00125
location: 26902..27936
location: region:26902-27936:1
so has part: feature:26902-27936:1:exon

WP_039461231.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26902-27936:1:exon

HF293_RS00130
type: Gene
subclass of: SO_0000704
RO_0002162: 29495
locus tag: HF293_RS00130
so part of: sequence
location: complement(27950..28543)
location: region:27950-28543:-1
so has part: feature:27950-28543:-1:exon
subclass of: SO_0000010

59227369
type: Gene
SIO_000068: ncbigene

position:27950:-1
position: 27950
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28543:-1
position: 28543
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27950-28543:-1:exon

HF293_RS00130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29495
locus tag: HF293_RS00130
inference: COORDINATES: protein motif:HMM:NF025840.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF4433 domain-containing protein
translation: MKKPEIQNGKELYHFTALDNLPSILSSKLLPRKQLTSFVDVADREILQGRDKFSLDEMVPFHFFPNNPFDGKVCQLNPEKKFAFIVVRRVTAKDREWKITPRHPLSGDCKLMSYDEGMKAIDWETMNEKDFKKPESKLICMAECLAPKAVEPSIFHAIYVATEEDKEKVQKAVTENNLQIFVEIKPFYFPSCYKFKK
SIO_010081: HF293_RS00130
subclass of: SO_0000673
so part of: HF293_RS00130
location: complement(27950..28543)
location: region:27950-28543:-1
so has part: feature:27950-28543:-1:exon

WP_039461233.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27950-28543:-1:exon

HF293_RS00135
type: Gene
subclass of: SO_0000704
RO_0002162: 29495
locus tag: HF293_RS00135
so part of: sequence
location: complement(29199..29399)
location: region:29199-29399:-1
so has part: feature:29199-29399:-1:exon
subclass of: SO_0000010

59227370
type: Gene
SIO_000068: ncbigene

position:29199:-1
position: 29199
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29399:-1
position: 29399
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29199-29399:-1:exon

HF293_RS00135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 29495
locus tag: HF293_RS00135
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: prepilin-type N-terminal cleavage/methylation domain-containing protein
translation: MKNGFTLLELLITVTVLGILLAFAVPNFGPMMSTSKMTNLSEELRNLVMMGRSEAVFRNAPFTSTF
SIO_010081: HF293_RS00135
subclass of: SO_0000673
so part of: HF293_RS00135
location: complement(29199..29399)
location: region:29199-29399:-1
so has part: feature:29199-29399:-1:exon

WP_172548449.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29199-29399:-1:exon