Vibrio furnissii strain FDAARGOS_777 plasmid unnamed1, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.
FDA dAtabase for Regulatory Grade micrObial Sequences (FDA-ARGOS): Supporting development and validation of Infectious Disease Dx tests
Submitted (11-JUN-2019) Center for Devices and Radiological Health, US Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993-0002, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP040989.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: canu v. 1.4\nGenome Coverage :: 790.51x\nSequencing Technology :: Pacbio; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 00:49:34\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,660\nCDSs (total) :: 4,516\nGenes (coding) :: 4,476\nCDSs (with protein) :: 4,476\nGenes (RNA) :: 144\nrRNAs :: 11, 10, 10 (5S, 16S, 23S)\ncomplete rRNAs :: 11, 10, 10 (5S, 16S, 23S)\ntRNAs :: 109\nncRNAs :: 4\nPseudo Genes (total) :: 40\nCDSs (without protein) :: 40\nPseudo Genes (ambiguous residues) :: 0 of 40\nPseudo Genes (frameshifted) :: 12 of 40\nPseudo Genes (incomplete) :: 29 of 40\nPseudo Genes (internal stop) :: 6 of 40\nPseudo Genes (multiple problems) :: 6 of 40\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_032495017.1
GO:0004803 - transposase activity [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016151372.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_016151373.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_014610919.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011151599.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS5-like element ISVpa3 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_076612097.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011846847.1
COORDINATES: similar to AA sequence:RefSeq:WP_008502231.1
COORDINATES: similar to AA sequence:RefSeq:WP_000108588.1
COORDINATES: similar to AA sequence:RefSeq:WP_008502230.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015697013.1
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002431133.1
COORDINATES: similar to AA sequence:RefSeq:WP_000039982.1
COORDINATES: similar to AA sequence:RefSeq:WP_001194072.1
COORDINATES: similar to AA sequence:RefSeq:WP_016240531.1
COORDINATES: protein motif:HMM:NF012382.2
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_000090196.1
COORDINATES: similar to AA sequence:RefSeq:WP_000734115.1
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004729353.1
COORDINATES: protein motif:HMM:NF012422.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LuxR C-terminal-related transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_020433511.1
COORDINATES: similar to AA sequence:RefSeq:WP_004729371.1
COORDINATES: similar to AA sequence:RefSeq:WP_020433458.1
COORDINATES: similar to AA sequence:RefSeq:WP_004729373.1
COORDINATES: similar to AA sequence:RefSeq:WP_020977920.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006991191.1
GO:0016639 - oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012129654.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611745.1
COORDINATES: protein motif:HMM:NF014335.2
COORDINATES: similar to AA sequence:RefSeq:WP_011144714.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076612081.1
COORDINATES: similar to AA sequence:RefSeq:WP_005491666.1
COORDINATES: similar to AA sequence:RefSeq:WP_004729635.1
mechanosensitive ion channel family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004726102.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612150.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS1634-like element ISSpu7 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_004249394.1
COORDINATES: similar to AA sequence:RefSeq:WP_007106047.1
COORDINATES: similar to AA sequence:RefSeq:WP_004729586.1
PAS domain-containing methyl-accepting chemotaxis protein
COORDINATES: similar to AA sequence:RefSeq:WP_012368358.1
COORDINATES: protein motif:HMM:NF039622.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612151.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001907982.1
COORDINATES: similar to AA sequence:RefSeq:WP_000993000.1
IS21-like element ISVch3 family helper ATPase IstB
COORDINATES: similar to AA sequence:RefSeq:WP_001118343.1
COORDINATES: protein motif:HMM:NF022792.2
COORDINATES: similar to AA sequence:RefSeq:WP_020482869.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03033.1
COORDINATES: similar to AA sequence:RefSeq:WP_017085245.1
GO:0006259 - DNA metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001913678.1
COORDINATES: similar to AA sequence:RefSeq:WP_011998861.1
COORDINATES: similar to AA sequence:RefSeq:WP_016799688.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_017061973.1
COORDINATES: similar to AA sequence:RefSeq:WP_009843725.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005536335.1
COORDINATES: similar to AA sequence:RefSeq:WP_017061976.1
COORDINATES: similar to AA sequence:RefSeq:WP_011998869.1
COORDINATES: similar to AA sequence:RefSeq:WP_017097178.1
COORDINATES: similar to AA sequence:RefSeq:WP_017055770.1
COORDINATES: similar to AA sequence:RefSeq:WP_012068857.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004729608.1
COORDINATES: similar to AA sequence:RefSeq:WP_005502804.1
COORDINATES: similar to AA sequence:RefSeq:WP_017449269.1
COORDINATES: similar to AA sequence:RefSeq:WP_006958798.1